BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= 537021.9.peg.817_1
(148 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
>gi|75674533|ref|YP_316954.1| DNA repair protein RadC [Nitrobacter winogradskyi Nb-255]
gi|74419403|gb|ABA03602.1| DNA repair protein RadC [Nitrobacter winogradskyi Nb-255]
Length = 236
Score = 153 bits (386), Expect = 8e-36, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Query: 3 DFRMSKAPSK-DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+ PS Y GH RLR+RF G +AL+ YE+LE++LFR +PR+D K +AK
Sbjct: 1 MPANADNPSGFAEAPHYHGHRERLRERFRDAGPDALSDYELLEMVLFRALPRRDVKPLAK 60
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
+L+ RF + V AP L+EI+ +G+ +E+KL++ + R+ K + L+
Sbjct: 61 SLIGRFGSFAEVVHAPDARLREISGLGEAAIIEIKLIAATASRVAKGQLKQRTVLSSWTA 120
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 121 VIDYCRTSMAFADKEQFRILFLD 143
>gi|146337832|ref|YP_001202880.1| DNA repair protein RadC [Bradyrhizobium sp. ORS278]
gi|146190638|emb|CAL74640.1| DNA repair protein RadC homolog [Bradyrhizobium sp. ORS278]
Length = 237
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 66/144 (45%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+ D + Y GH RLR+RF G +AL YE+LE+ LF +PR+D K +A
Sbjct: 1 MPDKALPPDDRPTETPHYHGHRQRLRERFHSAGPDALNDYELLEMALFPALPRRDVKPLA 60
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
KAL+K F + V AP L+E + IG +LKL++ A+ RI K K L Q
Sbjct: 61 KALIKTFGSFADVIHAPEQRLREFDGIGDASITQLKLIAAAAHRIAKGEVRQKHALASWQ 120
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 121 EVISYCRTSMAFADKEQFRLLFLD 144
>gi|92116052|ref|YP_575781.1| DNA repair protein RadC [Nitrobacter hamburgensis X14]
gi|91798946|gb|ABE61321.1| DNA repair protein RadC [Nitrobacter hamburgensis X14]
Length = 254
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 1/144 (0%)
Query: 2 EDFRMSKAPSK-DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+ P+ Y GH RLR+RF G +AL+ YE+LE++LFR +PR+D K +A
Sbjct: 18 PMPADADNPAGFAEAPHYHGHRERLRERFRDAGPDALSDYELLEMVLFRALPRRDVKPLA 77
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
K+L+ RF + V AP L+EI+ +G+ +E+KL++ + R+ K + L+
Sbjct: 78 KSLIGRFGSFAEVVHAPDARLREISGLGEAAIIEIKLIAATASRVAKGQLKPRTMLSSWT 137
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 138 AVIDYCRASMAFADKEQFRILFLD 161
>gi|115522133|ref|YP_779044.1| DNA repair protein RadC [Rhodopseudomonas palustris BisA53]
gi|115516080|gb|ABJ04064.1| DNA repair protein RadC [Rhodopseudomonas palustris BisA53]
Length = 238
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 63/137 (45%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
P Y GH RLR+RF G AL+ YE++EL+LFR +PR+D K +AKAL+ +F
Sbjct: 9 AKPGFAEAPHYHGHRERLRERFRAAGAEALSDYELMELVLFRALPRRDVKPLAKALIGKF 68
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
+ A L+E+ +G +E+KL + + R+ K + L+ +
Sbjct: 69 GSFAETVHASEARLREVGGLGDAAIIEIKLCAAIAARVAKGQLKPRAVLSSWSSVIDYCR 128
Query: 128 RHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 129 ASMAFADKEQFRILFLD 145
>gi|85713454|ref|ZP_01044444.1| DNA repair protein RadC [Nitrobacter sp. Nb-311A]
gi|85699358|gb|EAQ37225.1| DNA repair protein RadC [Nitrobacter sp. Nb-311A]
Length = 236
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 3 DFRMSKAPSK-DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+ P+ Y GH RLR+RF G +AL+ YE+LE++LFR +PR+D K +AK
Sbjct: 1 MPANADNPAGFAEAPHYHGHRERLRERFRDAGPDALSDYELLEMVLFRALPRRDVKPLAK 60
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
+L+ RF + V AP L+EI+ +G+ +E+KL++ ++ R+ K + L+
Sbjct: 61 SLIGRFGSFAEVVHAPDARLREISGLGEAAIIEIKLIAASASRVAKGQLKQRTMLSSWTA 120
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 121 VIDYCWTSMAFADKEQFRILFLD 143
>gi|209886704|ref|YP_002290561.1| DNA repair protein RadC [Oligotropha carboxidovorans OM5]
gi|209874900|gb|ACI94696.1| DNA repair protein RadC [Oligotropha carboxidovorans OM5]
Length = 205
Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 68/139 (48%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
S P Y GH RLRDRF + G +AL+ YE+LE++LFR +PR+D K +AKAL+
Sbjct: 8 PSDKPGFSEAPHYHGHRERLRDRFREAGPDALSDYELLEMVLFRALPRRDVKPLAKALIT 67
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF + AP L+E++ +G E+KL++ + R+ K + L+ +
Sbjct: 68 RFGSFAEAVHAPEARLKEVSGLGDAAITEMKLIAATASRVAKGQVKQRTMLSSWASVIDY 127
Query: 126 VERHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 128 CRATMAFSDKEQFRILFLD 146
>gi|330831605|ref|YP_004394557.1| DNA repair protein RadC [Aeromonas veronii B565]
gi|328806741|gb|AEB51940.1| DNA repair protein RadC [Aeromonas veronii B565]
Length = 224
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 50/129 (38%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L + L + +++ LL +F +L + GA
Sbjct: 4 KEWPEDERPREKLLRQGPAALSDAELLAIFLRTGVNGLSAVDLSRNLLNQFGSLRSLLGA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
E + +G +L+ V ++R L LT Q ++ +
Sbjct: 64 DQRAFCEAHGLGPAKYAQLQAVLEMARRHLAEQLQRGDVLTSPQLTRDYLQAQLRDRPRE 123
Query: 137 NFAYCFSIN 145
FA N
Sbjct: 124 VFALLLLDN 132
>gi|90422099|ref|YP_530469.1| DNA repair protein RadC [Rhodopseudomonas palustris BisB18]
gi|90104113|gb|ABD86150.1| DNA repair protein RadC [Rhodopseudomonas palustris BisB18]
Length = 242
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 64/132 (48%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
Y GH RLR+RF G AL+ YE++EL+LFR +PR+D K +AKAL+ +F +
Sbjct: 18 AEAPHYHGHRERLRERFRSAGAEALSDYELMELVLFRALPRRDVKPLAKALIGKFGSFAE 77
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
A L+EI +G+ E+KL++ A+ R+ K + L+ +
Sbjct: 78 TVHASEPRLREIAGLGEAAITEIKLIAAAASRVAKGELKQRAVLSSWSSVIDYCRTAMAF 137
Query: 133 KNANNFAYCFSI 144
+ F F
Sbjct: 138 ADKEQFRILFLD 149
>gi|254488973|ref|ZP_05102178.1| DNA repair protein RadC [Roseobacter sp. GAI101]
gi|214045842|gb|EEB86480.1| DNA repair protein RadC [Roseobacter sp. GAI101]
Length = 252
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 1 LEDFRMSKAPSKDSHLDYIG-HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSI 59
L D + P YI H RLR RF+Q G A+ YE+LEL+LFR IPR+D K +
Sbjct: 15 LHDEAVETVPVSGKQPSYIADHRQRLRARFMQGGAGAMPDYELLELVLFRAIPRRDVKPL 74
Query: 60 AKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPG 119
A AL+ RF V AP L+++ +G V +ELK++ A+ R+ ++ + ++
Sbjct: 75 AHALMDRFGDFNRVITAPEARLRDVTGVGDAVIVELKIIEAAAHRLARSKVMRQHVVSSW 134
Query: 120 QPCLISVERHYPMKNANNFAYCFSI--NII 147
L + F + N+I
Sbjct: 135 DALLDYCHTTMAHRETEQFRVLYLDRKNVI 164
>gi|299132649|ref|ZP_07025844.1| DNA repair protein RadC [Afipia sp. 1NLS2]
gi|298592786|gb|EFI52986.1| DNA repair protein RadC [Afipia sp. 1NLS2]
Length = 205
Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 65/139 (46%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
S Y GH RLRDRF G +AL+ YE+LE++LFR +PR+D K +AK L+
Sbjct: 8 PSDQSGFSEAPHYHGHRERLRDRFRDAGPDALSDYELLEMVLFRALPRRDVKPLAKTLIA 67
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF + V AP L+EIN +G E+KL++ + R+ K L+ +
Sbjct: 68 RFGSFAEVVHAPEARLREINGLGDAAVTEMKLIAATASRVAKGQVKQPTMLSSWSNVIDY 127
Query: 126 VERHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 128 CRTAMAFADKEQFRILFLD 146
>gi|119470592|ref|ZP_01613295.1| associated with replication fork DNA repair protein
[Alteromonadales bacterium TW-7]
gi|119446293|gb|EAW27570.1| associated with replication fork DNA repair protein
[Alteromonadales bacterium TW-7]
Length = 224
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ ++KG AL+ E+L + L +P + +A+ LL TL +F A +
Sbjct: 10 QRPREKLIEKGAKALSDAELLAIFLRTGLPGMNVIELAQHLLNENKTLHNLFNASMDEFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G ++L+ V SQR ++ + F +
Sbjct: 70 SQKGLGTAKYVQLQAVLELSQRYMQERCQRDAVFNSPSSVYDYLTIQMRGLQQEVFMVLY 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|148258571|ref|YP_001243156.1| DNA repair protein RadC [Bradyrhizobium sp. BTAi1]
gi|146410744|gb|ABQ39250.1| DNA repair protein RadC [Bradyrhizobium sp. BTAi1]
Length = 203
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 68/144 (47%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+ D + Y GH RLR+RF G +AL YE+LE++LF +PR+D K +A
Sbjct: 1 MADKSLPADAPPPETPHYHGHRQRLRERFHSAGPDALNDYELLEMVLFAALPRRDVKPLA 60
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
KALLK F + V AP L+EI+ IG+ +LKL++ A+ RI K K L+ Q
Sbjct: 61 KALLKMFGSFAEVIHAPEPRLREIDGIGEASITQLKLIAAAAHRIAKGEVKHKHALSSWQ 120
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
+ F
Sbjct: 121 EVITYCRTSMAFAEKEQLRLLFLD 144
>gi|83855405|ref|ZP_00948935.1| DNA repair protein RadC [Sulfitobacter sp. NAS-14.1]
gi|83843248|gb|EAP82415.1| DNA repair protein RadC [Sulfitobacter sp. NAS-14.1]
Length = 253
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 1 LEDFRMSKAPSKDSHLDYIG-HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSI 59
L D + P+ YI H RLR RF+Q G A+ YE+LEL+LFR IPR+D K +
Sbjct: 16 LGDEAVPAPPASGKQPSYIADHRQRLRARFMQGGAAAIPDYELLELVLFRAIPRRDVKPL 75
Query: 60 AKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPG 119
A+AL+ RF V AP L++I+ +G V +ELK++ A+ R+ ++ + L+
Sbjct: 76 ARALMDRFGDFNRVITAPEPRLRDISGVGDAVIVELKVIEAAAHRMARSRVMRQHVLSGW 135
Query: 120 QPCLISVERHYPMKNANNFAYCFSI--NII 147
L + F + N++
Sbjct: 136 DALLDYCHTTMAHRETEQFRVIYLDRKNVV 165
>gi|83941929|ref|ZP_00954391.1| DNA repair protein RadC [Sulfitobacter sp. EE-36]
gi|83847749|gb|EAP85624.1| DNA repair protein RadC [Sulfitobacter sp. EE-36]
Length = 253
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 1 LEDFRMSKAPSKDSHLDYIG-HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSI 59
L D + P+ YI H RLR RF+Q G A+ YE+LEL+LFR IPR+D K +
Sbjct: 16 LGDEAVPAPPASGKQPSYIADHRQRLRARFMQGGAAAIPDYELLELVLFRAIPRRDVKPL 75
Query: 60 AKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPG 119
A+AL+ RF V AP L++I+ +G V +ELK++ A+ R+ ++ + L+
Sbjct: 76 ARALMDRFGDFNRVITAPEPRLRDISGVGDAVIVELKVIEAAAHRMARSRVMRQHVLSGW 135
Query: 120 QPCLISVERHYPMKNANNFAYCFSI--NII 147
L + F + N++
Sbjct: 136 DALLDYCHTTMAHRETEQFRVIYLDRKNVV 165
>gi|77361558|ref|YP_341133.1| associated with replication fork DNA repair protein
[Pseudoalteromonas haloplanktis TAC125]
gi|123587696|sp|Q3IFE5|Y2643_PSEHT RecName: Full=UPF0758 protein PSHAa2643
gi|76876469|emb|CAI87691.1| associated with replication fork DNA repair protein
[Pseudoalteromonas haloplanktis TAC125]
Length = 224
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ ++KG AL+ E+L + L +P + +A+ LL TL +F A +
Sbjct: 10 QRPREKLIEKGAKALSDAELLAIFLRTGLPGMNVIELAQHLLNENKTLHNLFNASMEEFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G ++L+ V SQR ++ + F +
Sbjct: 70 AQKGLGTAKYVQLQAVLELSQRYMQERCQRDAIFNSPNAVYDYLTLQMRGLQQEVFMVLY 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|182679809|ref|YP_001833955.1| DNA repair protein RadC [Beijerinckia indica subsp. indica ATCC
9039]
gi|182635692|gb|ACB96466.1| DNA repair protein RadC [Beijerinckia indica subsp. indica ATCC
9039]
Length = 241
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 68/143 (47%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+ + Y GH RLR+RF + G +LA YE+LEL+LFR +PR+D K IAK
Sbjct: 6 DSTSAPTEDQSEPRPHYHGHRERLRERFRKSGGESLADYELLELLLFRAMPRRDVKPIAK 65
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
LL RF + V A L EI+ +G+ E K+V A++R+ K+ ++ L+
Sbjct: 66 NLLARFGSFAEVIAARPERLMEIDGLGEAAITEFKIVEAAARRLAKSTIESRQSLSSFSA 125
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 126 VIDYCRIAMGFLDREEFRILFLD 148
>gi|117619575|ref|YP_854693.1| DNA repair protein RadC [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|166218772|sp|A0KEM8|Y160_AERHH RecName: Full=UPF0758 protein AHA_0160
gi|117560982|gb|ABK37930.1| DNA repair protein RadC [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 224
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 48/129 (37%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G L+ E+L + L + +++ LL++F +L + GA
Sbjct: 4 KEWPEDERPREKLLRQGPGGLSDAELLAIFLRTGVSGLSAVDLSRHLLQQFGSLRALLGA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ +G +L+ V +R L LT Q ++ +
Sbjct: 64 EQRAFCAAHGLGPAKYAQLQAVLEMGKRHLAEQLQRGDPLTSPQLTRDYLQAQLRDRPRE 123
Query: 137 NFAYCFSIN 145
FA N
Sbjct: 124 VFALLLLDN 132
>gi|94499761|ref|ZP_01306297.1| DNA repair protein RadC [Oceanobacter sp. RED65]
gi|94427962|gb|EAT12936.1| DNA repair protein RadC [Oceanobacter sp. RED65]
Length = 223
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 54/129 (41%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ + R++ L G +L+ +E+L + L IP +A+ L++RF +L +FG
Sbjct: 4 KHWPQDQQPREKLLANGPTSLSDFELLAIFLRTGIPGLSAVELARDLIRRFGSLKNLFGT 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
PL ++ +G ++L+ V ++R L + + + +
Sbjct: 64 PLEEFCQVPGLGPAKYVQLQAVLEMAKRHLYESLEKGEGFSSPDSVERYLAHQLKHLPHE 123
Query: 137 NFAYCFSIN 145
FA + N
Sbjct: 124 VFACLYLDN 132
>gi|332036123|gb|EGI72599.1| DNA repair protein RadC [Pseudoalteromonas haloplanktis ANT/505]
Length = 224
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 43/121 (35%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ + KG AL E+L + L +P + +A+ LL +L +F A +
Sbjct: 11 RPREKLIAKGAKALTDAELLAIFLRTGLPGMNVIELAQHLLNENKSLHNLFNASIEEFCS 70
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+G ++L+ V SQR ++ + F +
Sbjct: 71 QKGLGTAKYVQLQAVLELSQRYMQERCQRDAVFNSPNSVYDYLTIQMRGLQQEVFMVLYL 130
Query: 144 I 144
Sbjct: 131 D 131
>gi|167045168|gb|ABZ09829.1| putative RadC, DNA repair protein [uncultured marine microorganism
HF4000_APKG8L7]
Length = 195
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 63/139 (45%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M+K P Y H RLR RF++ GE ALA YE+LEL+LF+ R D K +AK L++
Sbjct: 1 MAKDPDGTEKPHYHRHRMRLRTRFMEGGEEALADYELLELMLFQANARVDVKPLAKQLIE 60
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF GV A L+EI +G + LK V A+ R+ + + ++ L
Sbjct: 61 RFGGFTGVVSASPEALREIKGVGDAAIVVLKSVRAAAVRLAREETLEQPVISSWDRRLAY 120
Query: 126 VERHYPMKNANNFAYCFSI 144
F F
Sbjct: 121 CRVSMAHDRTERFLVLFLD 139
>gi|153870452|ref|ZP_01999852.1| DNA repair protein RadC [Beggiatoa sp. PS]
gi|152073088|gb|EDN70154.1| DNA repair protein RadC [Beggiatoa sp. PS]
Length = 242
Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 52/135 (38%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
K + + +R R++ LQ+G AL E+L + L I K+ +AK LL F L
Sbjct: 16 RKTQKITDMPLEDRPREKLLQRGAEALTNVELLAIFLRTGIRGKNALDLAKELLDDFGNL 75
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+ GA + +G ++LK S+R L+ LT +
Sbjct: 76 RTLLGADHKQFCKGKGLGDAKYVQLKACVEMSRRYLRECLERGNPLTNPDDTRNFLMSEL 135
Query: 131 PMKNANNFAYCFSIN 145
+ FA F N
Sbjct: 136 SGREYEVFACLFLDN 150
>gi|152994658|ref|YP_001339493.1| DNA repair protein RadC [Marinomonas sp. MWYL1]
gi|189029397|sp|A6VSX9|Y624_MARMS RecName: Full=UPF0758 protein Mmwyl1_0624
gi|150835582|gb|ABR69558.1| DNA repair protein RadC [Marinomonas sp. MWYL1]
Length = 224
Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 45/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ R R++ +Q+G AL+ E+L + L +A+ LL +F L + A
Sbjct: 4 KHWPEQERPREKLIQQGAGALSDSELLAIFLRTGTQGISAVELARQLLAQFGGLRSLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ +G +L+ V S+R L+ + + +
Sbjct: 64 SREEFCQGLGLGDAKYTQLQAVLEMSKRHLQEQLMRETVFASAEHVRTYLSSQLRHSPRE 123
Query: 137 NFAYCFSI 144
FA F
Sbjct: 124 VFAVLFLD 131
>gi|149912934|ref|ZP_01901468.1| DNA repair protein RadC [Roseobacter sp. AzwK-3b]
gi|149813340|gb|EDM73166.1| DNA repair protein RadC [Roseobacter sp. AzwK-3b]
Length = 254
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 66/141 (46%), Gaps = 3/141 (2%)
Query: 10 PSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA 68
P YI H RLRDRFL G A+ YE+LEL+LFR IPR+D K +A+ LL RF
Sbjct: 26 PPGGRLPSYIRDHRKRLRDRFLSGGAAAMPDYELLELVLFRAIPRRDVKPLARQLLDRFG 85
Query: 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
V A L E+ IG V ELK++ A+ R+ +A + ++ L
Sbjct: 86 DFNAVISASAAQLTEVPGIGDAVICELKIIEAAAHRLSRARVLQRPVISSWDALLDYCHT 145
Query: 129 HYPMKNANNFAYCFSI--NII 147
+ F + NI+
Sbjct: 146 TMAHRETEQFRVFYLDRKNIL 166
>gi|159046109|ref|YP_001534903.1| DNA repair protein RadC [Dinoroseobacter shibae DFL 12]
gi|157913869|gb|ABV95302.1| DNA repair protein RadC [Dinoroseobacter shibae DFL 12]
Length = 254
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 2/142 (1%)
Query: 6 MSKAPSKDSH-LDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
++ AP++ Y+ H RLR+RFL G A+ YE+LEL+LFR IPR+D K +A+ L
Sbjct: 21 VAPAPARQEKTPSYLKDHRKRLRERFLAGGAEAMPDYELLELVLFRAIPRQDVKPLARRL 80
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
++ F V APL L+ ++ +G+ VALELK+V A+ R+ + + ++ L
Sbjct: 81 IEEFGDFTHVLAAPLPRLRAVDGVGEAVALELKIVEAAAHRLARGKVLQRPVVSSWDALL 140
Query: 124 ISVERHYPMKNANNFAYCFSIN 145
+ + +F + N
Sbjct: 141 EYCQTAMAHLDTEHFRVLYLDN 162
>gi|315127738|ref|YP_004069741.1| replication fork DNA repair protein-associated protein
[Pseudoalteromonas sp. SM9913]
gi|315016252|gb|ADT69590.1| replication fork DNA repair protein-associated protein
[Pseudoalteromonas sp. SM9913]
Length = 224
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 47/121 (38%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ L+KG AL+ E+L + L +P + +A+ L+ TL +F A +
Sbjct: 11 RPREKLLEKGAKALSDAELLAIFLRTGLPGMNAIELAQHLINENKTLHNLFNASMDEFCA 70
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+G ++L+ V SQR ++ + Q + F +
Sbjct: 71 QKGLGMAKYVQLQAVLELSQRYMQEGFVRDAVFNSPQAVYDYLTLQMRGLQQEVFMVLYL 130
Query: 144 I 144
Sbjct: 131 D 131
>gi|110680841|ref|YP_683848.1| DNA repair protein RadC [Roseobacter denitrificans OCh 114]
gi|109456957|gb|ABG33162.1| DNA repair protein RadC [Roseobacter denitrificans OCh 114]
Length = 301
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 2/139 (1%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ + Y GH RLR RFL+ G + YEILEL+LF IPR D K +AK LL F L
Sbjct: 74 AGNKVPHYWGHRERLRQRFLKGGHAPMPEYEILELLLFNAIPRIDVKPLAKRLLSAFGDL 133
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
GV A H L ++ + +V +LKL +QR+ +A + L+ +
Sbjct: 134 NGVVAASEHRLMQVEGVEPKVYYQLKLAEAFAQRMGQAKILERCVLSSWDDLIEYCRTTM 193
Query: 131 PMKNANNFAYCFSI--NII 147
+ F F N+I
Sbjct: 194 AHRETEQFRVLFLDRKNVI 212
>gi|83592071|ref|YP_425823.1| DNA repair protein RadC [Rhodospirillum rubrum ATCC 11170]
gi|83574985|gb|ABC21536.1| DNA repair protein RadC [Rhodospirillum rubrum ATCC 11170]
Length = 243
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 9 APSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA 68
AP K Y GH RLRDRFL + L YE+LEL+LF+ PR D K +AKALL F
Sbjct: 16 APEKAPLPHYSGHRARLRDRFLAN-PDGLPDYELLELLLFQANPRGDVKPLAKALLATFG 74
Query: 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
+ V A L+ ++ +G LK ++ R+LK + L L
Sbjct: 75 SFARVISASPEALRRVDGVGDAAVAALKTAEASAHRLLKGEVMNQPVLGAWDRVLDYCHA 134
Query: 129 HYPMKNANNFAYCFSIN 145
+ F F N
Sbjct: 135 TMDHRPIEQFRVLFLDN 151
>gi|163733013|ref|ZP_02140457.1| DNA repair protein RadC [Roseobacter litoralis Och 149]
gi|161393548|gb|EDQ17873.1| DNA repair protein RadC [Roseobacter litoralis Och 149]
Length = 253
Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 68/144 (47%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
++ P + + H RLR RF++ G NA+ YE+LEL+LFR IPR+D K +A
Sbjct: 17 FDEAEPVAVPPGKTPSYMVDHRQRLRTRFMEGGANAMPDYELLELVLFRAIPRRDVKPLA 76
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
+ LL+RF V A L++I +G + ELK+V A+ R+ ++ + L+
Sbjct: 77 RTLLERFGDFNRVITASPQRLRDIKGVGDAIITELKIVEAAAHRMARSRVLQRHVLSGWD 136
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
L + F F
Sbjct: 137 ALLDYCHTTMAHRETEQFRVLFLD 160
>gi|294675779|ref|YP_003576394.1| DNA repair protein RadC [Rhodobacter capsulatus SB 1003]
gi|294474599|gb|ADE83987.1| DNA repair protein RadC [Rhodobacter capsulatus SB 1003]
Length = 254
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Query: 3 DFRMSKAPSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
D A S D YI H RLR+RFL G A+ YE+LELILFR +PR+D K +A+
Sbjct: 19 DEAQPVAVSSDRLPSYITDHRKRLRERFLTGGAEAMPDYELLELILFRALPRQDVKPLAR 78
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
LL F + G V AP L E+ +G+ V ELK+V A+QR+ ++ + L+ Q
Sbjct: 79 RLLDVFGSFGHVLAAPPARLTEVTGVGEAVVQELKIVEAAAQRLARSRVLQRPVLSSWQA 138
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
L + F F
Sbjct: 139 LLDYCHTAMAHRPTEQFRVLFLD 161
>gi|307825840|ref|ZP_07656056.1| DNA repair protein RadC [Methylobacter tundripaludum SV96]
gi|307733148|gb|EFO04009.1| DNA repair protein RadC [Methylobacter tundripaludum SV96]
Length = 224
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 50/123 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ L++G AL E+L + L P K +A+ LL F +L + GA
Sbjct: 10 DRPREKLLRRGSAALTDAELLAIFLRTGSPGKSAVDLARELLVDFGSLNALLGADQQRFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
E +G+ +L+ V ++R K LT + + + FA F
Sbjct: 70 EGKGLGEATYAQLQAVLEMARRHFKEALQRGNALTSPEITRSYLSAQLRGYSYEVFACLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|237806959|ref|YP_002891399.1| DNA repair protein RadC [Tolumonas auensis DSM 9187]
gi|259551912|sp|C4L814|Y183_TOLAT RecName: Full=UPF0758 protein Tola_0183
gi|237499220|gb|ACQ91813.1| DNA repair protein RadC [Tolumonas auensis DSM 9187]
Length = 224
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 52/127 (40%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R++ LQ+G +AL+ E+L + L + + +A+ LL+ F +L + GA
Sbjct: 6 WPEDERPREKLLQRGASALSDAELLAIFLRTGVAGCNAIELARNLLQEFGSLRALLGAEQ 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+ + +G ++L+ V S R L LT Q ++ + F
Sbjct: 66 AQFCQAHGLGPAKYVQLQAVLEMSNRYLSECLQRGDSLTSPQLVRRYLQAQLRDRPREVF 125
Query: 139 AYCFSIN 145
A N
Sbjct: 126 AMLLLDN 132
>gi|126724639|ref|ZP_01740482.1| DNA repair protein RadC [Rhodobacterales bacterium HTCC2150]
gi|126705803|gb|EBA04893.1| DNA repair protein RadC [Rhodobacterales bacterium HTCC2150]
Length = 253
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 3 DFRMSKAPSKDSHLDYIG-HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+ + + YI H RLR++FL+ G +AL YE+LEL+LFR IPR+D K +A+
Sbjct: 18 EPAVKAVNTGGKLPSYIADHRARLREQFLKGGADALPDYEMLELVLFRAIPRQDVKPLAR 77
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
LL F + V GAPL L + +G+ VA+E K+V+ A++R+ ++ ++ ++
Sbjct: 78 LLLDTFGSFSNVLGAPLPRLLAVKGVGQAVAVEFKIVADAARRLSRSQVKDQQLISSWDA 137
Query: 122 CLISVERHYPMKNANNFAYCFSI--NII 147
+ F F N++
Sbjct: 138 LVDYCRITMAQLETEEFRVLFLDRKNVL 165
>gi|308047854|ref|YP_003911420.1| DNA repair protein RadC [Ferrimonas balearica DSM 9799]
gi|307630044|gb|ADN74346.1| DNA repair protein RadC [Ferrimonas balearica DSM 9799]
Length = 227
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L++G AL+ E+L + L +P ++A+ LL F LG + A
Sbjct: 13 ERPRERLLKQGPEALSDAELLAIFLRTGVPGTSAVALARQLLDEFGDLGHLLNASKQQFC 72
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G+ ++L ++R L W + LT Q + F
Sbjct: 73 AIRGLGEAKYVQLHATLELARRYLAVQWQRGEPLTSPQAVRDYLRHRLQGLEEERFMLLL 132
Query: 143 SI 144
Sbjct: 133 LD 134
>gi|163734801|ref|ZP_02142239.1| DNA repair protein RadC [Roseobacter litoralis Och 149]
gi|161391906|gb|EDQ16237.1| DNA repair protein RadC [Roseobacter litoralis Och 149]
Length = 314
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
+ Y GH RLR RFL+ G + YEILEL+LF IPR D K +AK LL F L G
Sbjct: 89 NKVPHYWGHRERLRKRFLKGGHAPMPEYEILELLLFNAIPRIDVKPLAKRLLSAFGDLNG 148
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
V A H L ++ + +V +LKL +QR+ +A + L+ +
Sbjct: 149 VVAASEHRLMQVEGVEPKVYYQLKLAEAFAQRMGQAKILERCVLSSWDDLIEYCRTTMAH 208
Query: 133 KNANNFAYCFSI--NII 147
+ F F N+I
Sbjct: 209 RETEQFRVLFLDRKNVI 225
>gi|28867326|ref|NP_789945.1| DNA repair protein RadC [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213970685|ref|ZP_03398810.1| DNA repair protein RadC [Pseudomonas syringae pv. tomato T1]
gi|301382572|ref|ZP_07230990.1| DNA repair protein RadC [Pseudomonas syringae pv. tomato Max13]
gi|302063061|ref|ZP_07254602.1| DNA repair protein RadC [Pseudomonas syringae pv. tomato K40]
gi|302133591|ref|ZP_07259581.1| DNA repair protein RadC [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|37999601|sp|Q88BD1|Y086_PSESM RecName: Full=UPF0758 protein PSPTO_0086
gi|28850560|gb|AAO53640.1| DNA repair protein RadC [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213924519|gb|EEB58089.1| DNA repair protein RadC [Pseudomonas syringae pv. tomato T1]
gi|331018553|gb|EGH98609.1| hypothetical protein PLA106_21168 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 224
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 46/123 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LL +F L + A
Sbjct: 10 ERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRSLLDADQPAFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V ++R + + L ++ + FA F
Sbjct: 70 AQLGLGPAKFAQLQAVMEMARRHMAESLRRDSALENPAQVRNYLKAQLRHEPHEVFACLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|54307423|ref|YP_128443.1| DNA repair protein RadC [Photobacterium profundum SS9]
gi|54036225|sp|Q6LVN4|Y202_PHOPR RecName: Full=UPF0758 protein PBPRA0202
gi|46911843|emb|CAG18641.1| putative DNA repair protein RadC [Photobacterium profundum SS9]
Length = 224
Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 48/122 (39%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ L +G AL+ E+L + L I + +A LL F +L +F A L
Sbjct: 11 RPREKLLTRGAKALSDAELLAIFLRTGIKGMNAVELATHLLAEFGSLRALFAADQTLFCL 70
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+G +L+ + SQR L+ LT Q + + + F F
Sbjct: 71 HKGLGPAKYAQLQAIIEMSQRHLEETLKEGDVLTSPQHTRHYLSQLLRDRQREVFYVLFL 130
Query: 144 IN 145
N
Sbjct: 131 DN 132
>gi|90419162|ref|ZP_01227072.1| DNA repair protein [Aurantimonas manganoxydans SI85-9A1]
gi|90336099|gb|EAS49840.1| DNA repair protein [Aurantimonas manganoxydans SI85-9A1]
Length = 257
Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 73/137 (53%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
K+ ++GH +RLR RF + G +ALA YE+LEL+LFR IPR+D K IAKAL+ RF
Sbjct: 28 KSRDAAKSDHHLGHRDRLRARFAEAGADALADYELLELVLFRTIPRRDVKPIAKALIARF 87
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
+LG V AP L E+ + VA ++ +V +QR +++ ++ L+ L +
Sbjct: 88 GSLGEVLNAPPRRLTEVPGVKDSVARDIAIVVAINQRAMRSAVRQREVLSSWSAVLDYCK 147
Query: 128 RHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 148 AAMAYETREQFRILFLD 164
>gi|88858999|ref|ZP_01133640.1| associated with replication fork DNA repair protein
[Pseudoalteromonas tunicata D2]
gi|88819225|gb|EAR29039.1| associated with replication fork DNA repair protein
[Pseudoalteromonas tunicata D2]
Length = 245
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 47/122 (38%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ L+ G AL+ E+L + L IP + +A+ +L +L +F A L +
Sbjct: 32 RPREKLLKLGAEALSDAELLAIFLRTGIPGMNAIELAEHVLDTHHSLNQLFSASLLEFSQ 91
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G +L+ V S+R L + + + F F
Sbjct: 92 VKGLGAAKYAQLQAVLELSKRFLHESCQRDTVFNSPTHVRDYLALELKSRQQEVFMVLFL 151
Query: 144 IN 145
N
Sbjct: 152 DN 153
>gi|15965481|ref|NP_385834.1| DNA repair protein RadC [Sinorhizobium meliloti 1021]
gi|307302602|ref|ZP_07582358.1| DNA repair protein RadC [Sinorhizobium meliloti BL225C]
gi|307318449|ref|ZP_07597883.1| DNA repair protein RadC [Sinorhizobium meliloti AK83]
gi|25009036|sp|Q92PL6|Y1728_RHIME RecName: Full=UPF0758 protein R01728
gi|15074662|emb|CAC46307.1| Probable DNA repair protein [Sinorhizobium meliloti 1021]
gi|306895789|gb|EFN26541.1| DNA repair protein RadC [Sinorhizobium meliloti AK83]
gi|306902966|gb|EFN33557.1| DNA repair protein RadC [Sinorhizobium meliloti BL225C]
Length = 262
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 67/141 (47%), Positives = 87/141 (61%)
Query: 4 FRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
+ AP+ + Y GH +RLR R+ + G+ ALA YEILELILFRLIPR+DTK IAKAL
Sbjct: 29 NSPATAPAPATDTHYHGHRDRLRARYREHGDAALADYEILELILFRLIPRRDTKPIAKAL 88
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
L RF TL VFGAPLHLLQE+ +G+ VAL+LKLV+ AS R+L++ K+ L+ +
Sbjct: 89 LDRFGTLAAVFGAPLHLLQEVKGVGESVALDLKLVATASHRMLRSELRNKQVLSSWSAVI 148
Query: 124 ISVERHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 149 DYCHAAMAHETKEQFRILFLD 169
>gi|330505620|ref|YP_004382489.1| DNA repair protein RadC [Pseudomonas mendocina NK-01]
gi|328919906|gb|AEB60737.1| DNA repair protein RadC [Pseudomonas mendocina NK-01]
Length = 234
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 46/122 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L++G +L E+L + L + K +A+ LL F +L + A L
Sbjct: 20 ERPREKLLEQGAASLTDAELLAIFLRTGVTGKSAVDLARYLLSEFGSLRALLEADLTGFS 79
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G +L+ V S+R L L Q ++ + F F
Sbjct: 80 QHLGLGPAKYAQLQAVLEMSRRHLAERLRRDSALESPQAVRDYLKAQLRHEPHEVFGCLF 139
Query: 143 SI 144
Sbjct: 140 LD 141
>gi|254477756|ref|ZP_05091142.1| DNA repair protein RadC [Ruegeria sp. R11]
gi|214031999|gb|EEB72834.1| DNA repair protein RadC [Ruegeria sp. R11]
Length = 251
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Query: 7 SKAPSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
+KA + YI H RLR RF+ G A+ YE+LELILFR IPR+D K IA+ LL
Sbjct: 20 AKAAERGKQPSYIRDHRARLRQRFMDGGATAVPDYELLELILFRSIPRRDVKPIARMLLD 79
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF V AP L ++ IG+ V +LK++ A+ R+ +A + L+ L
Sbjct: 80 RFGDFNRVITAPPERLAQVPGIGEAVITDLKVLEAAAHRMARAKVMQRHVLSSWDALLDY 139
Query: 126 VERHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 140 CHTVMAHRETEQFRVLFLD 158
>gi|149908601|ref|ZP_01897263.1| DNA repair protein RadC [Moritella sp. PE36]
gi|149808435|gb|EDM68372.1| DNA repair protein RadC [Moritella sp. PE36]
Length = 224
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 50/131 (38%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
L + R++ ++ G +L+ E+L + L I + ++A +L F TL +
Sbjct: 2 KLKALPRDEMPREKLVKLGATSLSDAELLAIFLRTGIKGTNVVALASNILADFGTLRALL 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A H + +G ++L+ V S+R L LT Q + +
Sbjct: 62 AASEHEFCQTKGLGVAKYVQLQAVVEMSRRFLAEKLERSNVLTSPQESRDYIRAKLRDQP 121
Query: 135 ANNFAYCFSIN 145
FA F N
Sbjct: 122 HEVFAVLFLDN 132
>gi|237797777|ref|ZP_04586238.1| hypothetical protein POR16_02922 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331020627|gb|EGI00684.1| hypothetical protein POR16_02922 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 224
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LL +F L + A L
Sbjct: 10 ERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRSLLDADLTTFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V ++R + L ++ + FA F
Sbjct: 70 SQLGLGPAKFAQLQAVMEMARRHMAEALRRDSALENPAQVRNYLKAQLRHEPHEVFACLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|257454075|ref|ZP_05619349.1| DNA repair protein RadC [Enhydrobacter aerosaccus SK60]
gi|257448553|gb|EEV23522.1| DNA repair protein RadC [Enhydrobacter aerosaccus SK60]
Length = 225
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 48/124 (38%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ LQKG +L+ EIL + L + +A+ L+++F +L + AP +
Sbjct: 9 DERPREKLLQKGAESLSDSEILAIFLRTGTKDQSAIELARGLIEKFGSLAQLLAAPSEAV 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ IG ++ +R L + L Q + N FA
Sbjct: 69 MACHGIGMAKYAQILASLEMGKRYLASQVKQAPTLNASQLVKDYLTTQLRPLNREVFAVL 128
Query: 142 FSIN 145
F N
Sbjct: 129 FLTN 132
>gi|330876490|gb|EGH10639.1| hypothetical protein PSYMP_14329 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 224
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 46/123 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LL +F L + A
Sbjct: 10 ERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRSLLEADQPAFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V ++R + + L ++ + FA F
Sbjct: 70 AQLGLGPAKFAQLQAVMEMARRHMAESLRRDSALENPAQVRNYLKAQLRHEPHEVFACLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|30249435|ref|NP_841505.1| DNA repair protein RadC [Nitrosomonas europaea ATCC 19718]
gi|54036235|sp|Q82UL9|Y1464_NITEU RecName: Full=UPF0758 protein NE1464
gi|30138798|emb|CAD85375.1| DNA repair protein radC family [Nitrosomonas europaea ATCC 19718]
Length = 224
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 47/128 (36%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ ++KG AL+ E+L + L I +A+ LL F +L + A
Sbjct: 4 SDWPEAERPREKLIEKGAAALSDAELLAIFLRTGITGVSAVELARKLLTHFGSLTKLCAA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
LH E+ +G +L+ V ++R L + Q + K
Sbjct: 64 SLHEFSELPGMGPAKFAQLQAVMEMAKRALAEELKNGDIMDSPQSVRNYLCLSLKGKPYE 123
Query: 137 NFAYCFSI 144
F F
Sbjct: 124 VFVGIFLD 131
>gi|146309390|ref|YP_001189855.1| DNA repair protein RadC [Pseudomonas mendocina ymp]
gi|166218789|sp|A4Y0K7|Y4376_PSEMY RecName: Full=UPF0758 protein Pmen_4376
gi|145577591|gb|ABP87123.1| DNA replication and repair protein RadC [Pseudomonas mendocina ymp]
Length = 224
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 44/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G AL E+L + L + +A+ LL F +L + A L
Sbjct: 10 ERPREKLLAQGAAALTDAELLAIFLRTGVAGCSAVDLARRLLAEFGSLRALLEAELPDFS 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G +L+ V ++R L L Q ++ + F F
Sbjct: 70 QHLGLGPAKYAQLQAVLEMARRHLAERLRRDSALESPQAVRDYLKAQLRHEPHEVFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|257481766|ref|ZP_05635807.1| DNA repair protein RadC [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 219
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 47/123 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LL +F L + A L
Sbjct: 10 ERPRERLLELGAGSLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRSLLDADLSTFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V ++R + + L ++ + FA F
Sbjct: 70 SQLGLGPAKFAQLQAVMEMARRHMAESLRRDSALENPTQVRNYLKAQLRHEQHEVFACLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|110633807|ref|YP_674015.1| DNA repair protein RadC [Mesorhizobium sp. BNC1]
gi|110284791|gb|ABG62850.1| DNA repair protein RadC [Chelativorans sp. BNC1]
Length = 251
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 10 PSKDS---HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR 66
P K Y GH RLR+RF + G +ALA YE+LE++LFR +PR DTK AKALL R
Sbjct: 21 PGKTETRIKKHYEGHRERLRERFNEAGADALADYELLEMVLFRSVPRADTKCAAKALLNR 80
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
F ++G V GAP L+E+ IG+ A +LKL++ +QR+L++ K+ L+ L
Sbjct: 81 FGSIGEVLGAPEQRLREVEGIGEAAARDLKLIAALTQRMLRSEVRGKQVLSSWTQVLDYC 140
Query: 127 ERHYPMKNANNFAYCFSI 144
++ F F
Sbjct: 141 RAAMAYEDREQFRILFLD 158
>gi|260432018|ref|ZP_05785989.1| DNA repair protein RadC [Silicibacter lacuscaerulensis ITI-1157]
gi|260415846|gb|EEX09105.1| DNA repair protein RadC [Silicibacter lacuscaerulensis ITI-1157]
Length = 251
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 3/148 (2%)
Query: 3 DFRMSKAPSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
D YI H RLR+RF+ G A+ YE+LEL+LFR IPR+D K +A+
Sbjct: 16 DEAPVTPLPTGRLPSYIKDHRKRLRERFMTGGAGAMPDYELLELVLFRSIPRQDVKPLAR 75
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
LL F V AP+ L++I +G V +LK++ + R+ +A + ++
Sbjct: 76 RLLDAFGDFNRVLTAPVERLRQIKGVGDTVITDLKILEACAHRMARARVMQRHVISSWDA 135
Query: 122 CLISVERHYPMKNANNFAYCFSI--NII 147
L + F + N++
Sbjct: 136 LLDYCHTTMAHREIEQFRVFYLDRKNVL 163
>gi|330964261|gb|EGH64521.1| hypothetical protein PSYAC_06345 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 224
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 45/123 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LL +F L + A
Sbjct: 10 ERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRSLLEADQPAFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ ++R + + L ++ + FA F
Sbjct: 70 AQLGLGPAKFAQLQAAMEMARRHMAESLRRDSALENPAQVRNYLKAQLRHEPHEVFACLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|217978231|ref|YP_002362378.1| DNA repair protein RadC [Methylocella silvestris BL2]
gi|217503607|gb|ACK51016.1| DNA repair protein RadC [Methylocella silvestris BL2]
Length = 238
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 72/141 (51%)
Query: 4 FRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
++ Y+GH +RLR+RF + G ALA YE++ELILFR IPR+D K +AKAL
Sbjct: 5 KAGAQLAEGAPPPHYLGHRDRLRERFRKAGAEALADYELIELILFRAIPRRDVKPLAKAL 64
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
+ RF + V A L EI +G +EL+++ A++R+ +++ + + ++ +
Sbjct: 65 IARFGSFAEVVAARPERLAEIEGLGDAAIVELRIIEAAARRLARSSIAKRPSMSSLPAVI 124
Query: 124 ISVERHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 125 DYCRTAMAFLDREEFRILFLD 145
>gi|288942684|ref|YP_003444924.1| DNA repair protein RadC [Allochromatium vinosum DSM 180]
gi|288898056|gb|ADC63892.1| DNA repair protein RadC [Allochromatium vinosum DSM 180]
Length = 224
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 51/129 (39%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L + L IP K +A+ LL F L G+ A
Sbjct: 4 KDWPEGERPREKLLERGAGALSDAELLAIFLRTGIPGKSAVDLARELLTDFDGLTGLLAA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ +G +L+ V S+R L S + LT + ++
Sbjct: 64 DRRRFCDGKGLGTAKYAQLQAVLELSRRYLLTRLSGQDVLTSPEATRDYLKLRLYGSPHE 123
Query: 137 NFAYCFSIN 145
FA F N
Sbjct: 124 IFACLFLDN 132
>gi|126732884|ref|ZP_01748675.1| DNA repair protein RadC [Sagittula stellata E-37]
gi|126706660|gb|EBA05734.1| DNA repair protein RadC [Sagittula stellata E-37]
Length = 252
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 2/148 (1%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+ AP+ H RLR+RFL G +AL YE+LEL+LFR IPR+D K +A+
Sbjct: 17 HEEAPVTAPTAKLPSYIKDHRARLRERFLAGGPDALPDYEMLELVLFRAIPRRDVKPVAR 76
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
LL+ F GV AP L E++ +G+ V ELK+V A+ R+ ++ K+ L+
Sbjct: 77 QLLEVFGDFNGVLSAPATRLAEVSGVGEAVVCELKIVEAAAHRLARSRVMQKQVLSSWDA 136
Query: 122 CLISVERHYPMKNANNFAYCFSI--NII 147
L + F + N++
Sbjct: 137 LLAYCQTAMAHGEIEQFRVLYLDRKNVL 164
>gi|154253040|ref|YP_001413864.1| DNA repair protein RadC [Parvibaculum lavamentivorans DS-1]
gi|154156990|gb|ABS64207.1| DNA repair protein RadC [Parvibaculum lavamentivorans DS-1]
Length = 230
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ D+ Y GH RLR+RFL+ L YE+LEL+LFR +PR+D K +AK L+ RF
Sbjct: 5 AADAKPHYAGHRERLRERFLKS-PETLPDYELLELVLFRAVPRRDVKPLAKELIARFGGF 63
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
V A L+E + + E ++ R+ +A K+ L L
Sbjct: 64 SEVINAEPSRLRETKGVSDAIVTEFRIARETGLRLAQAKVMKKEVLGSWAALLDYCSASM 123
Query: 131 PMKNANNFAYCFSI--NII 147
F F N++
Sbjct: 124 AHNPTEQFRILFLDRKNVL 142
>gi|241663908|ref|YP_002982268.1| DNA repair protein RadC [Ralstonia pickettii 12D]
gi|240865935|gb|ACS63596.1| DNA repair protein RadC [Ralstonia pickettii 12D]
Length = 224
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 50/123 (40%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L G AL+ E+L + L +P K +A+ LL F +L + A
Sbjct: 9 HERPREKLLAHGPAALSDAELLAIFLRVGMPGKSAVDLARELLTHFGSLARLCHASQQEF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
IN +G +L + ++R LK +++ + Q + + FA
Sbjct: 69 SSINGMGPAKYAQLHALLEVARRALKEDFTHGQTFDSPQSVKNFLRLTLGHRPHEVFACF 128
Query: 142 FSI 144
F
Sbjct: 129 FLD 131
>gi|71734935|ref|YP_272515.1| DNA repair protein RadC [Pseudomonas syringae pv. phaseolicola
1448A]
gi|289625760|ref|ZP_06458714.1| DNA repair protein RadC [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289646363|ref|ZP_06477706.1| DNA repair protein RadC [Pseudomonas syringae pv. aesculi str.
2250]
gi|298484831|ref|ZP_07002931.1| DNA repair protein RadC [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|123638799|sp|Q48Q04|Y210_PSE14 RecName: Full=UPF0758 protein PSPPH_0210
gi|71555488|gb|AAZ34699.1| DNA repair protein RadC [Pseudomonas syringae pv. phaseolicola
1448A]
gi|298160685|gb|EFI01706.1| DNA repair protein RadC [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|320322246|gb|EFW78342.1| DNA repair protein RadC [Pseudomonas syringae pv. glycinea str.
B076]
gi|320331895|gb|EFW87833.1| DNA repair protein RadC [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330866535|gb|EGH01244.1| hypothetical protein PSYAE_04585 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330873142|gb|EGH07291.1| hypothetical protein Pgy4_03892 [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330890934|gb|EGH23595.1| hypothetical protein PSYMO_19883 [Pseudomonas syringae pv. mori
str. 301020]
gi|330986860|gb|EGH84963.1| hypothetical protein PLA107_17667 [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009400|gb|EGH89456.1| hypothetical protein PSYTB_06881 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 224
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 47/123 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LL +F L + A L
Sbjct: 10 ERPRERLLELGAGSLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRSLLDADLSTFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V ++R + + L ++ + FA F
Sbjct: 70 SQLGLGPAKFAQLQAVMEMARRHMAESLRRDSALENPTQVRNYLKAQLRHEQHEVFACLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|119385035|ref|YP_916091.1| DNA repair protein RadC [Paracoccus denitrificans PD1222]
gi|171704472|sp|A1B4F1|Y2304_PARDP RecName: Full=UPF0758 protein Pden_2304
gi|119374802|gb|ABL70395.1| DNA repair protein RadC [Paracoccus denitrificans PD1222]
Length = 263
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 12 KDSHLDYIG-HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
YI H RLR+RF+Q G A+ YE+LEL+LFR IPR+D K +A+ LL RF
Sbjct: 37 GTRPPSYIADHRARLRERFMQGGAAAMPDYELLELVLFRAIPRQDVKPLARRLLDRFGDF 96
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
V AP L E++ +G V ELK+V A+QR+ ++ + LT L
Sbjct: 97 NRVLSAPPARLAEVSGLGPAVLQELKIVEAAAQRLARSRVMHRPVLTSWDALLDYCHTAM 156
Query: 131 PMKNANNFAYCFSI 144
F +
Sbjct: 157 AHGEIEQFRVLYLD 170
>gi|261856735|ref|YP_003264018.1| DNA repair protein RadC [Halothiobacillus neapolitanus c2]
gi|261837204|gb|ACX96971.1| DNA repair protein RadC [Halothiobacillus neapolitanus c2]
Length = 223
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 45/126 (35%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R+R L++G AL+ E+ + L + + +A+ LL F + G+ A
Sbjct: 6 WPEDERPRERLLKQGAGALSDAELFAIFLRTGVAGRSAVDLARDLLTHFGGVRGLLNASR 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
E +G +L+ V ++R + + + ++ F
Sbjct: 66 RDFTEAKGLGDAKFAQLQAVLELARRHFAEELAEGAVIDSPEATRRYLQAQLRDAAQEVF 125
Query: 139 AYCFSI 144
A F
Sbjct: 126 AVLFLD 131
>gi|83643895|ref|YP_432330.1| DNA repair protein [Hahella chejuensis KCTC 2396]
gi|123534642|sp|Q2SN69|Y1020_HAHCH RecName: Full=UPF0758 protein HCH_01020
gi|83631938|gb|ABC27905.1| DNA repair protein [Hahella chejuensis KCTC 2396]
Length = 224
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 47/129 (36%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+R R++ + G + L+ E+L + + +A+ + F L + A
Sbjct: 4 SDWPKADRPREKLIAHGSSKLSETELLAIFFRTGTRGRSAVDLARDTINHFGGLRPLLDA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
++I +G+ +L+ + ++R L+ LT + + H
Sbjct: 64 SFEEFRQIPGLGEAKFTQLQAATELAKRYLQEKMQRSHNLTSPELTREYLSAHLRHYPYE 123
Query: 137 NFAYCFSIN 145
FA F N
Sbjct: 124 VFAALFLDN 132
>gi|298292919|ref|YP_003694858.1| DNA repair protein RadC [Starkeya novella DSM 506]
gi|296929430|gb|ADH90239.1| DNA repair protein RadC [Starkeya novella DSM 506]
Length = 217
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 67/133 (50%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
++ ++GH RLR+RF Q G AL YE+LEL+LFR + R D K +AKAL+ RF + G
Sbjct: 26 EEPAPHFLGHRERLRERFRQAGGEALPDYELLELVLFRAVTRADVKPLAKALIDRFGSFG 85
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
V AP L+E+ +G+ V ELKL+ A +R+ + + L+ +
Sbjct: 86 EVVAAPPGRLREVKGVGEAVITELKLIGAAVERVTRGKVRERPVLSSWSAVIAHCRAAMA 145
Query: 132 MKNANNFAYCFSI 144
F F
Sbjct: 146 FAEQEQFRILFLD 158
>gi|254237987|ref|ZP_04931310.1| DNA repair protein RadC [Pseudomonas aeruginosa C3719]
gi|126169918|gb|EAZ55429.1| DNA repair protein RadC [Pseudomonas aeruginosa C3719]
Length = 224
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 44/126 (34%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R++ L++G AL+ E+L + L + +++ LL F L + A L
Sbjct: 6 WPEAERPREKLLEQGAAALSDAELLAIFLRTGVAGCSAVELSRRLLSEFGGLRALLEADL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+G +L+ V +R L L Q ++ + F
Sbjct: 66 ASFCGHLGLGVAKYAQLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVF 125
Query: 139 AYCFSI 144
A F
Sbjct: 126 ACLFLD 131
>gi|77461760|ref|YP_351267.1| DNA repair protein RadC [Pseudomonas fluorescens Pf0-1]
gi|123602798|sp|Q3K4M8|Y5539_PSEPF RecName: Full=UPF0758 protein Pfl01_5539
gi|77385763|gb|ABA77276.1| DNA replication and repair protein RadC [Pseudomonas fluorescens
Pf0-1]
Length = 224
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L++G +L+ E+L + L +P K +A+ LL +F +L + A
Sbjct: 10 ERPRERLLEQGSASLSDAELLAIFLRTGVPGKSAVDLARHLLNQFGSLRLLLEADQEAFS 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G +L+ S+R L K L Q ++ + F F
Sbjct: 70 KQLGLGPAKFAQLQAAQEMSKRHLAERSRQKTALENPQVVRDYLKVMLRHEPHEVFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|15600512|ref|NP_254006.1| DNA repair protein RadC [Pseudomonas aeruginosa PAO1]
gi|13431808|sp|Q9HTN5|Y5319_PSEAE RecName: Full=UPF0758 protein PA5319
gi|9951636|gb|AAG08704.1|AE004944_8 DNA repair protein RadC [Pseudomonas aeruginosa PAO1]
Length = 224
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 44/126 (34%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R++ L++G AL+ E+L + L + +++ LL F L + A L
Sbjct: 6 WPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+G +L+ V +R L L Q ++ + F
Sbjct: 66 ASFCGHLGLGVAKYAQLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVF 125
Query: 139 AYCFSI 144
A F
Sbjct: 126 ACLFLD 131
>gi|300703309|ref|YP_003744911.1| DNA repair protein RadC fork [Ralstonia solanacearum CFBP2957]
gi|299070972|emb|CBJ42281.1| DNA repair protein radC homolog, associated with replication fork
[Ralstonia solanacearum CFBP2957]
Length = 224
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 51/123 (41%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L +G AL+ E+L + L +P K +A+ LL F +LG + A
Sbjct: 9 HERPREKLLTQGSAALSDAELLAIFLRVGVPGKSAVDLARELLAHFGSLGRLCHASQGDF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I+ +G +L + ++R LK + + L Q + + FA
Sbjct: 69 SAIHGMGPAKYAQLHALLEVARRALKEEIAHGQTLESPQSVKDFLRLTLGHRPQEVFACL 128
Query: 142 FSI 144
F
Sbjct: 129 FLD 131
>gi|107104421|ref|ZP_01368339.1| hypothetical protein PaerPA_01005498 [Pseudomonas aeruginosa PACS2]
gi|116053466|ref|YP_793793.1| DNA repair protein RadC [Pseudomonas aeruginosa UCBPP-PA14]
gi|218894422|ref|YP_002443292.1| DNA repair protein RadC [Pseudomonas aeruginosa LESB58]
gi|254243795|ref|ZP_04937117.1| DNA repair protein RadC [Pseudomonas aeruginosa 2192]
gi|296392178|ref|ZP_06881653.1| DNA repair protein RadC [Pseudomonas aeruginosa PAb1]
gi|313106745|ref|ZP_07792962.1| DNA repair protein RadC [Pseudomonas aeruginosa 39016]
gi|122256513|sp|Q02E43|Y7023_PSEAB RecName: Full=UPF0758 protein PA14_70230
gi|226736626|sp|B7V5L0|Y5714_PSEA8 RecName: Full=UPF0758 protein PLES_57141
gi|115588687|gb|ABJ14702.1| DNA repair protein RadC [Pseudomonas aeruginosa UCBPP-PA14]
gi|126197173|gb|EAZ61236.1| DNA repair protein RadC [Pseudomonas aeruginosa 2192]
gi|218774651|emb|CAW30468.1| DNA repair protein RadC [Pseudomonas aeruginosa LESB58]
gi|310879464|gb|EFQ38058.1| DNA repair protein RadC [Pseudomonas aeruginosa 39016]
Length = 224
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 44/126 (34%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R++ L++G AL+ E+L + L + +++ LL F L + A L
Sbjct: 6 WPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+G +L+ V +R L L Q ++ + F
Sbjct: 66 ASFCGHLGLGVAKYAQLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVF 125
Query: 139 AYCFSI 144
A F
Sbjct: 126 ACLFLD 131
>gi|300113050|ref|YP_003759625.1| DNA repair protein RadC [Nitrosococcus watsonii C-113]
gi|299538987|gb|ADJ27304.1| DNA repair protein RadC [Nitrosococcus watsonii C-113]
Length = 224
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 50/124 (40%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ LQ+G NAL+ E+L + L + K +A+ LL+ F +L + A L
Sbjct: 9 HERPREKLLQRGPNALSDAELLAIFLRTGVAGKTAVDLARELLESFGSLRALLEADLKQF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G +L+ +R L+A LT Q + F+
Sbjct: 69 CHAPGLGIAKYTQLQACLEMGRRHLEATLKRGDVLTDPQTTQRYLMARLRAYPFEVFSCL 128
Query: 142 FSIN 145
F N
Sbjct: 129 FLDN 132
>gi|49081838|gb|AAT50319.1| PA5319 [synthetic construct]
Length = 225
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 43/126 (34%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R++ L++G AL E+L + L + +++ LL F L + A L
Sbjct: 6 WPEAERPREKLLEQGAAALPDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+G +L+ V +R L L Q ++ + F
Sbjct: 66 ASFCGHLGLGVAKYAQLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVF 125
Query: 139 AYCFSI 144
A F
Sbjct: 126 ACLFLD 131
>gi|309781502|ref|ZP_07676238.1| DNA repair protein RadC [Ralstonia sp. 5_7_47FAA]
gi|308919915|gb|EFP65576.1| DNA repair protein RadC [Ralstonia sp. 5_7_47FAA]
Length = 224
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 50/123 (40%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L G AL+ E+L + L +P K +A+ LL F +L + A
Sbjct: 9 HERPREKLLAHGPAALSDAELLAIFLRVGMPGKSAVDLARELLTHFGSLARLCHASQQEF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
IN +G +L + ++R LK +++ + Q + + FA
Sbjct: 69 SSINGMGPAKYAQLHALLEVARRALKEDFTHGQTFDSPQSVKNFLRLTLGHRPHEVFACF 128
Query: 142 FSI 144
F
Sbjct: 129 FLD 131
>gi|197104531|ref|YP_002129908.1| DNA repair protein [Phenylobacterium zucineum HLK1]
gi|196477951|gb|ACG77479.1| DNA repair protein [Phenylobacterium zucineum HLK1]
Length = 243
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 71/144 (49%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+ED + + GH RLR R + G AL YE+LEL LFR IP+KD K +A
Sbjct: 7 IEDASGAPDLFAAPAPHFAGHRERLRRRAVAGGLAALPDYELLELFLFRSIPKKDVKPLA 66
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
K LL RF +LG V GA L+ + +G+ VAL+LKL+ A+ R K + ++
Sbjct: 67 KQLLARFGSLGAVLGATAAELRTVPGVGESVALDLKLLHEATLRTAKEQVGRRPVISSWS 126
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
L V+ ++ F F
Sbjct: 127 ALLAYVKTALAHESREQFRVLFLD 150
>gi|300690691|ref|YP_003751686.1| DNA repair protein radC homolog, associated with replication fork
[Ralstonia solanacearum PSI07]
gi|299077751|emb|CBJ50389.1| DNA repair protein radC homolog, associated with replication fork
[Ralstonia solanacearum PSI07]
Length = 224
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 51/123 (41%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L +G AL+ E+L + L +P K +A+ LL F +LG + A
Sbjct: 9 HERPREKLLTQGSAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGCLCHASQREF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I+ +G +L + ++R LK + + L Q + + FA
Sbjct: 69 SAIHGMGPAKYAQLHALLEVARRALKEEITHGQPLESPQSVKDFLRLTLGHRPQEVFACL 128
Query: 142 FSI 144
F
Sbjct: 129 FLD 131
>gi|226942456|ref|YP_002797529.1| DNA repair protein RadC [Azotobacter vinelandii DJ]
gi|259551855|sp|C1DI57|Y294_AZOVD RecName: Full=UPF0758 protein Avin_02940
gi|226717383|gb|ACO76554.1| P-pantothenate cysteine ligase / P-pantothenoylcysteine
decarboxylase [Azotobacter vinelandii DJ]
Length = 224
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L++G +AL+ E+L + L + + +A+ LL F L + A
Sbjct: 10 ERPREKLLEQGASALSDAELLAIFLRTGVAGQTAVDLARHLLNDFGGLRALLEADRAAFS 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V S+R L L Q ++ + F F
Sbjct: 70 RRLGLGPAKFAQLQAVLEMSRRHLAERLRRDPALESPQAVRDYLKARLRHEPHEVFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|254466524|ref|ZP_05079935.1| DNA repair protein RadC [Rhodobacterales bacterium Y4I]
gi|206687432|gb|EDZ47914.1| DNA repair protein RadC [Rhodobacterales bacterium Y4I]
Length = 254
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 12 KDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
YI H RLR+RF+Q G A+ YE+LEL+LFR IPR+D K +A+ LL+ F
Sbjct: 28 SSRLPSYIKDHRARLRERFMQGGAAAMPDYELLELLLFRSIPRRDVKPLARQLLETFGDF 87
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
V A L + IG V + K++ A+ R+ +A ++ ++ L
Sbjct: 88 NRVVTASPERLASVKGIGDAVITDFKVLEAAAHRMARARVMQRQVISSWDALLDYCHTTM 147
Query: 131 PMKNANNFAYCFSI--NII 147
+ F F N++
Sbjct: 148 AHRETEQFRILFLDRKNVL 166
>gi|327479136|gb|AEA82446.1| DNA repair protein RadC [Pseudomonas stutzeri DSM 4166]
Length = 224
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 44/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G AL+ E+L + L + K +A+ LL F +L + A L
Sbjct: 10 ERPREKLLDQGAAALSDAELLAIFLRTGVAGKSAVDLARYLLAEFGSLRALLEADLDQFS 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V +R L L Q ++ + F F
Sbjct: 70 AHLGLGPAKFAQLQAVLEMGRRHLAERLRRHSALESPQAVRDYLKARLRHEPHELFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|146280868|ref|YP_001171021.1| DNA repair protein RadC [Pseudomonas stutzeri A1501]
gi|166218790|sp|A4VGS8|Y473_PSEU5 RecName: Full=UPF0758 protein PST_0473
gi|145569073|gb|ABP78179.1| DNA repair protein RadC [Pseudomonas stutzeri A1501]
Length = 224
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 44/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G AL+ E+L + L + K +A+ LL F +L + A L
Sbjct: 10 ERPREKLLDQGAAALSDAELLAIFLRTGVAGKSAVDLARYLLAEFGSLRALLEADLDQFS 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V +R L L Q ++ + F F
Sbjct: 70 AHLGLGPAKFAQLQAVLEMGRRHLAERLRRDSALESPQAVRDYLKARLRHEPHELFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|89094938|ref|ZP_01167869.1| DNA repair protein RadC [Oceanospirillum sp. MED92]
gi|89080804|gb|EAR60045.1| DNA repair protein RadC [Oceanospirillum sp. MED92]
Length = 224
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 45/123 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G L+ E+L + L + K +A+ LL F +L + +
Sbjct: 10 ERPREKLLLQGAATLSDAELLAIFLRTGVKGKSAVDLARDLLLEFGSLSALLQSDQKCFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
N +G +L+ V +R L + L Q + N FA F
Sbjct: 70 SANGLGVAKYAQLQAVLEMGRRYLTSVLEKGSALESPQQVKALLASQLRHYNREVFACLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|326793822|ref|YP_004311642.1| DNA repair protein RadC [Marinomonas mediterranea MMB-1]
gi|326544586|gb|ADZ89806.1| DNA repair protein RadC [Marinomonas mediterranea MMB-1]
Length = 224
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 41/128 (32%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ R R++ +Q G AL+ E+L + L +A+++L F L + A
Sbjct: 4 KHWPEQERPREKLIQNGAGALSDAELLAIFLRTGTQGISAVELARSVLSHFGGLRQLLAA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ +G +L+ V S+R L + +
Sbjct: 64 TREEFCQGFGLGDAKYTQLQAVMEMSRRYLHEQLVKETVFHNADHVKSYLSSQLRHSPRE 123
Query: 137 NFAYCFSI 144
F F
Sbjct: 124 KFVALFLD 131
>gi|187929782|ref|YP_001900269.1| DNA repair protein RadC [Ralstonia pickettii 12J]
gi|238691809|sp|B2UAP0|Y2712_RALPJ RecName: Full=UPF0758 protein Rpic_2712
gi|187726672|gb|ACD27837.1| DNA repair protein RadC [Ralstonia pickettii 12J]
Length = 224
Score = 137 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 50/123 (40%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L G AL+ E+L + L +P K +A+ LL F +L + A
Sbjct: 9 HERPREKLLAHGPAALSDAELLAIFLRVGVPGKSAVDLARELLAHFGSLARLCHASQQEF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
IN +G +L + ++R LK +++ + Q + + FA
Sbjct: 69 SSINGMGPAKYAQLHALLEVARRALKEDFTQGQTFESAQSVKDFLRLTLGHRPHEVFACF 128
Query: 142 FSI 144
F
Sbjct: 129 FLD 131
>gi|114330795|ref|YP_747017.1| DNA repair protein RadC [Nitrosomonas eutropha C91]
gi|122314267|sp|Q0AHY0|Y782_NITEC RecName: Full=UPF0758 protein Neut_0782
gi|114307809|gb|ABI59052.1| DNA replication and repair protein RadC [Nitrosomonas eutropha C91]
Length = 224
Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 47/128 (36%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ +QKG L+ E+L + L I K +A+ LL F +L + A
Sbjct: 4 SDWPEAERPREKLIQKGATVLSDAELLAIFLRTGITGKSAVELARNLLTHFGSLTKLCAA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
LH ++ +G +L+ V ++R L + Q + K
Sbjct: 64 NLHEFSKLPGMGPAKFAQLQAVMEMARRALAEELKSGDIMDSPQSVRSYLRLSLGGKPHE 123
Query: 137 NFAYCFSI 144
F F
Sbjct: 124 VFVGIFLD 131
>gi|66043492|ref|YP_233333.1| DNA repair protein RadC [Pseudomonas syringae pv. syringae B728a]
gi|75503901|sp|Q4ZZX7|Y222_PSEU2 RecName: Full=UPF0758 protein Psyr_0222
gi|63254199|gb|AAY35295.1| DNA repair protein RadC [Pseudomonas syringae pv. syringae B728a]
gi|330972197|gb|EGH72263.1| hypothetical protein PSYAR_17040 [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 224
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 47/123 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LL +F L + A L
Sbjct: 10 ERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRPLLDADLSAFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V ++R + + + L ++ + F F
Sbjct: 70 SQLGLGPAKFAQLQAVMEMARRHMAESLRRESALENPTQVRSYLKALLRHEPHEVFGCLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|154246981|ref|YP_001417939.1| DNA repair protein RadC [Xanthobacter autotrophicus Py2]
gi|154161066|gb|ABS68282.1| DNA repair protein RadC [Xanthobacter autotrophicus Py2]
Length = 209
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 2/141 (1%)
Query: 6 MSKAPSK--DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
M++AP + + GH +RLR RF + G ALA YE+LEL+LFR +PR+D K +AKAL
Sbjct: 1 MAEAPEDGLNEAPHFHGHRDRLRARFREAGAQALADYELLELVLFRAVPRRDVKPLAKAL 60
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
+ RF + V AP LL E+ + + ELK+V A+QR+ K + L+ +
Sbjct: 61 VDRFGSFAEVVAAPPGLLAEVAGVKDAIITELKVVEAAAQRLAKGQVKRRPVLSSWSAVI 120
Query: 124 ISVERHYPMKNANNFAYCFSI 144
+ F
Sbjct: 121 DYCRTAMAYADREQVRVLFLD 141
>gi|116251828|ref|YP_767666.1| DNA repair protein RadC [Rhizobium leguminosarum bv. viciae 3841]
gi|226736628|sp|Q1MHK3|Y2068_RHIL3 RecName: Full=UPF0758 protein RL2068
gi|115256476|emb|CAK07560.1| putative DNA repair protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 275
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 87/148 (58%), Gaps = 2/148 (1%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+ R + S Y GH RLRDRF ++G+ ALA YEILEL+LFRLIPR+DTK IAK
Sbjct: 40 PNARAALPASLAGQEHYHGHRERLRDRFREQGDAALADYEILELLLFRLIPRRDTKPIAK 99
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
AL++RF +L GVFGAP LL E+ +G+ VAL+LKL+S + R LK+ K+ L+
Sbjct: 100 ALIERFGSLAGVFGAPQALLMEVKGVGEAVALDLKLISTVAHRTLKSELRTKQVLSSWSS 159
Query: 122 CLISVERHYPMKNANNFAYCFSI--NII 147
+ + F F N++
Sbjct: 160 VIQYCHAAMAHETREQFRILFLDKRNVL 187
>gi|253995755|ref|YP_003047819.1| DNA repair protein RadC [Methylotenera mobilis JLW8]
gi|253982434|gb|ACT47292.1| DNA repair protein RadC [Methylotenera mobilis JLW8]
Length = 224
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 50/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ ++ G AL+ E+L + L + K +A+ LL +F +L G+F A L
Sbjct: 10 ERPREKLIELGAEALSDAELLAIFLRVGVVGKSAVDLARDLLSQFGSLNGIFAASEDALS 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+++ IG ++L+ + S+R L + Q + F F
Sbjct: 70 QVHGIGSSKYVQLQAIFEMSRRALNEQLQQRDVFQSPQQVRDYLVLKLGALPREVFMVLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|302184918|ref|ZP_07261591.1| DNA repair protein RadC [Pseudomonas syringae pv. syringae 642]
Length = 224
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 48/123 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LL +F L + A L +
Sbjct: 10 ERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRPLLDADLTVFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V ++R + + + L ++ + F F
Sbjct: 70 SQLGLGPAKFAQLQAVMEMARRHMAESLRRESALENPTQVRSYLKALLRHEPHEVFGCLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|152984586|ref|YP_001351411.1| DNA repair protein RadC [Pseudomonas aeruginosa PA7]
gi|166218788|sp|A6VEC6|Y6095_PSEA7 RecName: Full=UPF0758 protein PSPA7_6095
gi|150959744|gb|ABR81769.1| DNA repair protein RadC [Pseudomonas aeruginosa PA7]
Length = 224
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 44/126 (34%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R++ L++G L+ E+L + L + +A+ LL F +L + + L
Sbjct: 6 WPEAERPREKLLEQGAATLSDAELLAIFLRTGVTGCSAVELARRLLGEFGSLRALLESDL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+G +L+ V +R L L Q ++ + F
Sbjct: 66 AAFCGHLGLGVAKYAQLQAVLEMGRRHLAERLRRDSVLESPQAVRDYLKARLRHEQHEVF 125
Query: 139 AYCFSI 144
A F
Sbjct: 126 ACLFLD 131
>gi|163745060|ref|ZP_02152420.1| DNA repair protein RadC [Oceanibulbus indolifex HEL-45]
gi|161381878|gb|EDQ06287.1| DNA repair protein RadC [Oceanibulbus indolifex HEL-45]
Length = 237
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 2/149 (1%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+++ R + + H RLR RF+ G A+ YE+LEL+LFR IPR+D K +A
Sbjct: 1 MDEARKPPSNTGKQPSYIADHRQRLRSRFIDGGAAAMPDYEMLELVLFRAIPRRDVKPLA 60
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
+ LL RF V AP L+++ IG+ V +ELK+V A+QR+ +A + +
Sbjct: 61 RELLDRFGDFNRVITAPAARLRDVKGIGEAVIVELKIVEAAAQRLARAKVLKRHVVASWD 120
Query: 121 PCLISVERHYPMKNANNFAYCFSI--NII 147
L F + NI+
Sbjct: 121 ALLDYCHTTMAHLETEQFRVLYLDRKNIL 149
>gi|241204438|ref|YP_002975534.1| DNA repair protein RadC [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858328|gb|ACS55995.1| DNA repair protein RadC [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 275
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 86/148 (58%), Gaps = 2/148 (1%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+ R + S Y GH RLRDRF + G+ ALA YEILEL+LFRLIPR+DTK IAK
Sbjct: 40 PNSRTALPASLAGQEHYHGHRERLRDRFRELGDTALADYEILELLLFRLIPRRDTKPIAK 99
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
AL++RF +L GVFGAP LL E+ +G+ VAL+LKL+S + R LK+ K+ L+
Sbjct: 100 ALIERFGSLSGVFGAPPTLLTEVKGVGEAVALDLKLISTVAHRTLKSELRSKQVLSSWSS 159
Query: 122 CLISVERHYPMKNANNFAYCFSI--NII 147
+ + F F N++
Sbjct: 160 VIQYCHAAMAHETREQFRILFLDKRNVL 187
>gi|114321811|ref|YP_743494.1| DNA repair protein RadC [Alkalilimnicola ehrlichii MLHE-1]
gi|122310756|sp|Q0A583|Y2664_ALHEH RecName: Full=UPF0758 protein Mlg_2664
gi|114228205|gb|ABI58004.1| DNA replication and repair protein RadC [Alkalilimnicola ehrlichii
MLHE-1]
Length = 224
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 50/123 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L++G AL+ E+L + L +A+ LL+ F L + A L
Sbjct: 10 ERPREKLLERGAGALSDAELLAIFLRTGRQGLSAVDLARELLEAFGGLRPLLEADLDRFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G +L+ V ++R L A + LT + + ++ FA F
Sbjct: 70 DHLGLGPAKFTQLQAVLEMARRHLHAGLERGEALTSPEQVARYLTARLRHQSREIFACLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|256823436|ref|YP_003147399.1| DNA repair protein RadC [Kangiella koreensis DSM 16069]
gi|256796975|gb|ACV27631.1| DNA repair protein RadC [Kangiella koreensis DSM 16069]
Length = 224
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 47/127 (37%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R+R L++G +L+ E+L + L + +A+ LL F +L + A L
Sbjct: 6 WPQDERPRERLLRQGPQSLSDAELLAIFLRTGTQGLNAVDLARHLLGEFGSLRALLEADL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+G +L+ S+R L+ N + + + ++ F
Sbjct: 66 KSFTSHLGLGSAKYCQLQACLELSKRYLQENLQHSQSFSNPNDVKLYLKSLLSHHKREQF 125
Query: 139 AYCFSIN 145
F N
Sbjct: 126 VALFLNN 132
>gi|229593348|ref|YP_002875467.1| DNA repair protein RadC [Pseudomonas fluorescens SBW25]
gi|259551894|sp|C3K471|Y5982_PSEFS RecName: Full=UPF0758 protein PFLU_5982
gi|229365214|emb|CAY53505.1| DNA repair protein [Pseudomonas fluorescens SBW25]
Length = 224
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 46/122 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L+ G +L+ E+L + L + + +A+ LL +F L + A L
Sbjct: 10 ERPREKLLEWGAASLSDAELLAIFLRTGVSGRSAVDLARHLLAQFGGLRPLLEASQALFN 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G +L+ V ++R + L + ++ + F F
Sbjct: 70 QQLGLGPAKFAQLQAVLEMAKRHMAERLRHDSVLESPKAVRDYLKAMLRHEPHEIFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|330952116|gb|EGH52376.1| hypothetical protein PSYCIT7_12239 [Pseudomonas syringae Cit 7]
Length = 224
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 47/123 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LL +F L + A L
Sbjct: 10 ERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRPLLDADLSAFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V ++R + + + L ++ + F F
Sbjct: 70 SQLGLGPAKFAQLQAVMEMARRHMAESLRRESALENPTQVRSYLKALLRHEPHEVFGCLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|163743881|ref|ZP_02151252.1| DNA repair protein RadC [Phaeobacter gallaeciensis 2.10]
gi|161382822|gb|EDQ07220.1| DNA repair protein RadC [Phaeobacter gallaeciensis 2.10]
Length = 254
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Query: 6 MSKAPSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
+++A S YI H RLRDRF+ G A+ YE+LEL+LFR IPR+D K +A+ LL
Sbjct: 22 IARARKPPSPPSYIKDHRARLRDRFMTGGAAAMPDYELLELVLFRSIPRRDVKPLARQLL 81
Query: 65 KRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
+ F V AP L I +G V +LK++ A+ R+ +A + L+ L
Sbjct: 82 ENFGDFNRVITAPPERLARIAGVGDAVITDLKVLEAAAHRMARAKVLQRHILSSWDALLD 141
Query: 125 SVERHYPMKNANNFAYCFSI 144
+ F +
Sbjct: 142 YCHTVMAHRETEQFRVLYLD 161
>gi|17547163|ref|NP_520565.1| DNA repair protein RadC [Ralstonia solanacearum GMI1000]
gi|25009031|sp|Q8XWN0|Y2444_RALSO RecName: Full=UPF0758 protein RSc2444
gi|17429465|emb|CAD16151.1| probable dna repair protein radc homolog [Ralstonia solanacearum
GMI1000]
Length = 224
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 51/123 (41%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L +G AL+ E+L + L +P K +A+ LL F +LG + A
Sbjct: 9 HERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRLCHASRREF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I+ +G +L + ++R LK + + L Q + + FA
Sbjct: 69 SAIHGMGPAKYAQLHALLEVARRALKEEIAYGQTLESPQSVKDFLRLTLGHRPQEVFACL 128
Query: 142 FSI 144
F
Sbjct: 129 FLD 131
>gi|158425828|ref|YP_001527120.1| DNA repair protein RadC [Azorhizobium caulinodans ORS 571]
gi|158332717|dbj|BAF90202.1| DNA repair protein [Azorhizobium caulinodans ORS 571]
Length = 234
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 50/141 (35%), Positives = 68/141 (48%), Gaps = 2/141 (1%)
Query: 6 MSKAPSK--DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
M+ P + + GH +RLR RF G ALA YE++ELILFR IPR+D K +AKAL
Sbjct: 1 MAGEPDDGVEDAPHFHGHRDRLRARFRDAGAQALADYELIELILFRAIPRRDVKPLAKAL 60
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
++RF + V AP LL EI + + ELKLV A+ R+ K + L+ L
Sbjct: 61 VERFGSFAEVIAAPPRLLAEIPGVKDAIITELKLVEAAAHRLAKGQVKRRPVLSSWSAVL 120
Query: 124 ISVERHYPMKNANNFAYCFSI 144
+ F
Sbjct: 121 DYCRSAMAFADKEQVRVLFLD 141
>gi|145301064|ref|YP_001143905.1| DNA repair protein RadC [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142853836|gb|ABO92157.1| DNA repair protein RadC [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 327
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 4/129 (3%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G L+ E+L + L + +++ LL++F +L + GA
Sbjct: 111 KEWPEDERPREKLLRQGPATLSDAELLAIFLRTGVNGLSAVDLSRQLLQQFGSLRALLGA 170
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ +G +L+ V +R L LT Q ++
Sbjct: 171 DQGAFCHAHGLGPAKYAQLQAVLEMGKRHLAEQLQRGDALTSPQLTRDYLQAQL----RE 226
Query: 137 NFAYCFSIN 145
FA N
Sbjct: 227 VFALLLLDN 235
>gi|299065959|emb|CBJ37140.1| DNA repair protein radC homolog, associated with replication fork
[Ralstonia solanacearum CMR15]
Length = 224
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 51/123 (41%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L +G AL+ E+L + L +P K +A+ LL F +LG + A
Sbjct: 9 HERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRLCHASRREF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I+ +G +L + ++R LK + + L Q + + FA
Sbjct: 69 SAIHGMGPAKYAQLHALLEVARRALKEEIAHGQTLESPQSVKDFLRLTLGHRPQEVFACL 128
Query: 142 FSI 144
F
Sbjct: 129 FLD 131
>gi|163737937|ref|ZP_02145353.1| DNA repair protein RadC [Phaeobacter gallaeciensis BS107]
gi|161388553|gb|EDQ12906.1| DNA repair protein RadC [Phaeobacter gallaeciensis BS107]
Length = 254
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Query: 6 MSKAPSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
++ A S YI H RLRDRF+ G A+ YE+LEL+LFR IPR+D K +A+ LL
Sbjct: 22 IAPARKPPSPPSYIKDHRARLRDRFMTGGAAAMPDYELLELVLFRSIPRRDVKPLARQLL 81
Query: 65 KRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
F V AP L I +G V +LK++ A+ R+ +A + L+ L
Sbjct: 82 DNFGDFNRVITAPPERLARIAGVGDAVITDLKVLEAAAHRMARAKVLQRHILSSWDVLLD 141
Query: 125 SVERHYPMKNANNFAYCFSI 144
+ F +
Sbjct: 142 YCHTVMAHRETEQFRVLYLD 161
>gi|222148674|ref|YP_002549631.1| DNA repair protein RadC [Agrobacterium vitis S4]
gi|221735660|gb|ACM36623.1| DNA repair protein [Agrobacterium vitis S4]
Length = 278
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 67/143 (46%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 4 FRMSKAPSKDSH--LDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
M KAP + Y GH RLR RF +KG+ ALA YE+LEL+LFRLIPR+DTK IAK
Sbjct: 43 KAMKKAPDTSAKQSEHYHGHRERLRLRFKEKGDEALADYEVLELLLFRLIPRRDTKPIAK 102
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
ALL RF +L GVFGA LLQE+ +G+ VAL+LKL+S A+QR+LK+ K+ L+
Sbjct: 103 ALLDRFGSLAGVFGAKHTLLQEVKGVGEAVALDLKLISSAAQRMLKSELKGKQILSSWSS 162
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 163 VIDYCHAAMAYETTEQFRILFLD 185
>gi|77464752|ref|YP_354256.1| DNA repair protein RadC [Rhodobacter sphaeroides 2.4.1]
gi|77389170|gb|ABA80355.1| DNA repair protein [Rhodobacter sphaeroides 2.4.1]
Length = 254
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 2 EDFRMSKAPSKDSHLDYIG-HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
ED +++ P YI H RLR RF + G A+ YE+LEL+LFR IPR+D K +A
Sbjct: 19 EDEALAE-PLGARLPSYIADHRKRLRARFQEGGAAAMPDYELLELLLFRSIPRQDVKPLA 77
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
+ L+ RF L V A + L ++ +G+ VA +LK++ +QR+ +A + LT
Sbjct: 78 RRLIDRFGDLNRVVTADMARLLDVEGVGEAVAQDLKILEAVAQRMARARVMNQPVLTSWA 137
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
L + F +
Sbjct: 138 ALLDYCHTTMAHRATEQFRVLYLD 161
>gi|126738441|ref|ZP_01754146.1| DNA repair protein RadC [Roseobacter sp. SK209-2-6]
gi|126720240|gb|EBA16946.1| DNA repair protein RadC [Roseobacter sp. SK209-2-6]
Length = 258
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Query: 2 EDFRMSKAPSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
D S S YI H RLR RF G +A+ YE+LEL+LFR IPR+D K +A
Sbjct: 22 PDEAPSTPLSGPRLPSYIKDHRTRLRQRFRDGGADAMPDYELLELVLFRSIPRQDVKPLA 81
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
+ LL F +G V A L ++ +G+ V +LK++ A+ R+ +A + ++ +
Sbjct: 82 RRLLDCFGDIGRVVAAQPERLAQVRGVGEAVITDLKILEAAAHRMARAKVMQRHVISSWE 141
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
L + F F
Sbjct: 142 ALLDYCHTSMAHRQTEQFRILFLD 165
>gi|207721439|ref|YP_002251880.1| DNA repair protein RadC [Ralstonia solanacearum MolK2]
gi|207742580|ref|YP_002258972.1| dna repair protein radc homolog [Ralstonia solanacearum IPO1609]
gi|206586599|emb|CAQ17186.1| dna repair protein radc homolog [Ralstonia solanacearum MolK2]
gi|206593974|emb|CAQ60901.1| dna repair protein radc homolog [Ralstonia solanacearum IPO1609]
Length = 224
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 50/123 (40%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L +G L+ E+L + L +P K +A+ LL F +LG + A
Sbjct: 9 HERPREKLLAQGSAVLSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRLCHASQGEF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I+ +G +L + ++R LK + + L Q + + FA
Sbjct: 69 SAIHGMGPAKYAQLHALLEVARRALKEEIAHGQTLESPQSVKDFLRLTLGHRPQEVFACL 128
Query: 142 FSI 144
F
Sbjct: 129 FLD 131
>gi|289674414|ref|ZP_06495304.1| DNA repair protein RadC [Pseudomonas syringae pv. syringae FF5]
gi|330977334|gb|EGH77287.1| hypothetical protein PSYAP_11500 [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 224
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 49/123 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LLK+F L + A L +
Sbjct: 10 ERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLKQFDGLRPLLDADLSVFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V ++R + + + L ++ + F F
Sbjct: 70 SQLGLGPAKFAQLQAVMEMARRHMAESLRRESALENPTQVRGYLKALLRHEPHEVFGCLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|152979886|ref|YP_001354241.1| DNA repair protein RadC [Janthinobacterium sp. Marseille]
gi|166218783|sp|A6T144|Y2551_JANMA RecName: Full=UPF0758 protein mma_2551
gi|151279963|gb|ABR88373.1| DNA repair protein [Janthinobacterium sp. Marseille]
Length = 224
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 50/128 (39%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+R R+R ++ G L E+L + L + K +A+ +L F +L +F A
Sbjct: 4 SDWPEQDRPRERLIKHGAAILTDAELLAIFLRLGVAGKSAVDLARDMLNHFGSLHALFSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L ++N +G +L+ V ++R L I L Q ++ K
Sbjct: 64 SLDDFSQLNGLGPAKYAQLQAVLELTRRSLSEELQIGISLNSPQAVKKYLQLLLGGKPYE 123
Query: 137 NFAYCFSI 144
FA F
Sbjct: 124 AFAVLFLD 131
>gi|289209451|ref|YP_003461517.1| DNA repair protein RadC [Thioalkalivibrio sp. K90mix]
gi|288945082|gb|ADC72781.1| DNA repair protein RadC [Thioalkalivibrio sp. K90mix]
Length = 242
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 12/145 (8%)
Query: 13 DSHLDYIGHHN------------RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+ + H R R++ +++G AL+ E+L + L + K +A
Sbjct: 7 NEKTKRLNHREVGMAITDWPAAERPREKLIERGAAALSDAELLAIFLRTGVAGKSAVDVA 66
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
+ LL RF L + + +G +L+ V +R L A+ LT
Sbjct: 67 RDLLSRFGGLRPLLQSDQAGFCAAPGLGDAKYAQLQAVLEMGRRHLAADLERGDALTSPT 126
Query: 121 PCLISVERHYPMKNANNFAYCFSIN 145
+ FA F N
Sbjct: 127 ATRQFLAARLRDYPFEVFAVLFLDN 151
>gi|218682712|ref|ZP_03530313.1| DNA repair protein RadC [Rhizobium etli CIAT 894]
Length = 278
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/133 (46%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
Y GH RLRDRF + G+ ALA YEILEL+LFRLIPR+DTK IAKAL++RF +L GVFGA
Sbjct: 58 HYHGHRERLRDRFRELGDTALADYEILELLLFRLIPRRDTKPIAKALIERFGSLSGVFGA 117
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
P LL E+ +G+ VAL+LKL+S + R LK+ K+ L+ + +
Sbjct: 118 PPALLTEVKGVGEAVALDLKLISTVAHRTLKSELRSKQVLSSWSSVIQYCHAAMAHETRE 177
Query: 137 NFAYCFSI--NII 147
F F N++
Sbjct: 178 QFRILFLDKRNVL 190
>gi|56694982|ref|YP_165328.1| DNA repair protein RadC [Ruegeria pomeroyi DSS-3]
gi|73913740|sp|Q5LWK3|Y054_SILPO RecName: Full=UPF0758 protein SPO0054
gi|56676719|gb|AAV93385.1| DNA repair protein RadC [Ruegeria pomeroyi DSS-3]
Length = 224
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 15 HLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
YI H RLR+RF+ G AL YE+LEL+LFR IPR+D K +A+ LL F V
Sbjct: 1 MPSYIRDHRKRLRERFMTGGAAALPDYELLELVLFRSIPRQDVKPLARLLLDTFGDFNRV 60
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
AP+ L E+ +G+ V +LK++ ++ R+ +A ++ ++ L +
Sbjct: 61 LTAPVERLAEVKGVGEAVITDLKILEASAHRMARARVMQRQVISSWDALLDYCHTTMAHR 120
Query: 134 NANNFAYCFSI 144
F +
Sbjct: 121 ETEQFRVFYLD 131
>gi|84684609|ref|ZP_01012510.1| DNA repair protein RadC [Maritimibacter alkaliphilus HTCC2654]
gi|84667588|gb|EAQ14057.1| DNA repair protein RadC [Rhodobacterales bacterium HTCC2654]
Length = 257
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 11 SKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT 69
+K YI H RLR+RF+ G AL YE+LEL+LFR IPR+D K +A+ LL RF
Sbjct: 29 TKARLPSYISDHRARLRERFMSGGAAALPDYEMLELVLFRAIPRQDVKPLARRLLDRFGD 88
Query: 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
GV A L+E++ +G V ELK+V A+ R+ +A ++ ++ +
Sbjct: 89 FNGVLSASPSRLKEMHGVGDAVVQELKIVEAAAHRLSRARVMGRRVVSSWDQLIDYCHTT 148
Query: 130 YPMKNANNFAYCFSI 144
+ F +
Sbjct: 149 MSHRETEQFRVLYLD 163
>gi|227821958|ref|YP_002825929.1| DNA repair protein RadC [Sinorhizobium fredii NGR234]
gi|254789656|sp|C3MBW4|Y1397_RHISN RecName: Full=UPF0758 protein NGR_c13970
gi|227340958|gb|ACP25176.1| DNA repair protein RadC [Sinorhizobium fredii NGR234]
Length = 263
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 63/133 (47%), Positives = 82/133 (61%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
Y GH +RLR R+ ++G+ ALA Y+ILELILFRLIPR+DTK IAK LL RF TL
Sbjct: 38 GTGEAHYHGHRDRLRARYREQGDAALADYDILELILFRLIPRRDTKPIAKELLARFGTLS 97
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
GVFGAP HLLQE+ +G+ VAL+LKL++ A+QR LK+ K+ L+ +
Sbjct: 98 GVFGAPQHLLQEVKGVGEAVALDLKLIATAAQRTLKSELRNKQVLSSWSAVIDYCHAAMA 157
Query: 132 MKNANNFAYCFSI 144
+ F F
Sbjct: 158 HETKEQFRILFLD 170
>gi|331005601|ref|ZP_08328971.1| DNA repair protein RadC [gamma proteobacterium IMCC1989]
gi|330420574|gb|EGG94870.1| DNA repair protein RadC [gamma proteobacterium IMCC1989]
Length = 224
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 42/122 (34%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G N L+ E+L + L K +A+ LL F L + A
Sbjct: 10 ERPREKLLAQGANTLSDAELLAIFLRTGCAGKSAVDLARELLTHFGGLRAILEANQSSFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G +L+ V ++R L + T + FA F
Sbjct: 70 QGKGLGNASYAQLQAVLEMTKRHLAERLKKEDIFTNPAHVKRFLAIQLRHLQQEVFAVLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|297537568|ref|YP_003673337.1| DNA repair protein RadC [Methylotenera sp. 301]
gi|297256915|gb|ADI28760.1| DNA repair protein RadC [Methylotenera sp. 301]
Length = 224
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 53/122 (43%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L+ G AL+ E+L + L + K +A+ LL +F +L G+F A L L
Sbjct: 10 ERPREKLLELGVEALSDAELLAIFLRVGVTGKSAVDLARDLLTQFGSLNGIFAAQLSELT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+++ +G ++L+ + S+R L K L+ + + F F
Sbjct: 70 QVHGVGSSKYVQLQAIFEMSRRALNEQMQAKDILSSPKQVRDYLCLKLGNLTREVFFVLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|126734464|ref|ZP_01750211.1| DNA repair protein RadC [Roseobacter sp. CCS2]
gi|126717330|gb|EBA14194.1| DNA repair protein RadC [Roseobacter sp. CCS2]
Length = 255
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Query: 12 KDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
K Y+ H RLR+RFL G A+ YE+LEL+LFR IPR+D K +A+AL+ F
Sbjct: 25 KGKVPSYMRDHRKRLRERFLSGGAGAMPDYEMLELVLFRAIPRQDVKPLARALIDIFGDF 84
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
V A L ++ +G V LELK+V A+ R+ +A + L+ L
Sbjct: 85 NRVLSASAGQLLAVSGVGDAVLLELKIVEAAAHRLSRAKIMQRHVLSSWDALLDYCHTTM 144
Query: 131 PMKNANNFAYCFSI 144
+ F F
Sbjct: 145 AHRATEQFRILFLD 158
>gi|254454766|ref|ZP_05068203.1| DNA repair protein RadC [Octadecabacter antarcticus 238]
gi|198269172|gb|EDY93442.1| DNA repair protein RadC [Octadecabacter antarcticus 238]
Length = 265
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 2/146 (1%)
Query: 4 FRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
+ + S HH RLR RFL G A+ YEILEL LFR IPR+D K +A+ L
Sbjct: 32 PALPTSKSGKQPSYLADHHKRLRHRFLTGGAAAMPDYEILELTLFRAIPRQDVKPLARLL 91
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
++ F L GV AP+ L+ ++ +G VALELK++ + R+ +A + ++ L
Sbjct: 92 IETFGDLNGVLSAPIARLERVHGVGTAVALELKVMETVTHRMARAKVMQRHVISSWDAVL 151
Query: 124 ISVERHYPMKNANNFAYCFSI--NII 147
++ F F N++
Sbjct: 152 DYCHTVMAHRDTEQFRVLFLDRKNVL 177
>gi|218515385|ref|ZP_03512225.1| DNA repair protein RadC [Rhizobium etli 8C-3]
Length = 274
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 64/147 (43%), Positives = 86/147 (58%), Gaps = 3/147 (2%)
Query: 4 FRMSKAPSKDSHL-DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
+ P+ S Y GH RLRDRF ++G+ ALA YEILEL+LFRLIPR+DTK IAKA
Sbjct: 40 NARAALPASLSGPEHYHGHRERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIAKA 99
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
L+ RF +L GVFGAP LL E+ +G+ VAL+LKL+S + R LK+ K+ L+
Sbjct: 100 LIDRFGSLSGVFGAPAGLLTEVKGVGENVALDLKLISTVAHRTLKSEIRSKQVLSSWSSV 159
Query: 123 LISVERHYPMKNANNFAYCFSI--NII 147
+ + F F N++
Sbjct: 160 IQYCHAAMAHETREQFRILFLDKRNVL 186
>gi|330957298|gb|EGH57558.1| hypothetical protein PMA4326_01827 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 224
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 44/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G L+ E+L + L + K +A+ LL +F L + A L
Sbjct: 10 ERPRERLLELGAEGLSDAELLAIFLRTGVAGKSAVDLARHLLNQFGGLRPLLEADLSAFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V ++R + + L ++ + F F
Sbjct: 70 SQLGLGPAKFAQLQAVMEMARRHMAESLRRDSALENPAQVRSYLKALLRHEPHEVFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|254719330|ref|ZP_05181141.1| DNA repair protein RadC [Brucella sp. 83/13]
gi|265984331|ref|ZP_06097066.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306839105|ref|ZP_07471922.1| DNA repair protein RadC [Brucella sp. NF 2653]
gi|264662923|gb|EEZ33184.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306405652|gb|EFM61914.1| DNA repair protein RadC [Brucella sp. NF 2653]
Length = 249
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K Y GH +RL+ RF +ALA YE+LEL+LFR I R DTK IAKALL RF ++
Sbjct: 25 KLEKPHYAGHRDRLKQRFRDA-PDALADYELLELLLFRAIRRADTKPIAKALLNRFGSIA 83
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
V AP +L+ EI G VALELKLV ++R ++ ++ L+ +
Sbjct: 84 EVLAAPENLIAEIPGAGPTVALELKLVEAIAKRSARSTVMEREVLSSWDKVINYCTAAMA 143
Query: 132 MKNANNFAYCFSI 144
+ F F
Sbjct: 144 FETREQFRILFLD 156
>gi|260429142|ref|ZP_05783119.1| DNA repair protein RadC [Citreicella sp. SE45]
gi|260419765|gb|EEX13018.1| DNA repair protein RadC [Citreicella sp. SE45]
Length = 254
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 7 SKAPSKDSH--LDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
+ P++ YI H RLR+RFL G +AL YE+LEL+LFR IPR+D K +A+AL
Sbjct: 21 PELPARGERQLPSYIRDHRARLRERFLIGGPDALPDYELLELVLFRAIPRRDVKPLARAL 80
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
L+RF GV AP L EI +G V ELK+V A+ R+ ++ K+ +T L
Sbjct: 81 LERFGDFNGVLSAPATRLHEIAGVGDAVVTELKIVEAAAHRLARSRVLQKQVVTSWDALL 140
Query: 124 ISVERHYPMKNANNFAYCFSI 144
+ ++ F
Sbjct: 141 EYCQTAMAHRDTEQLRVLFLD 161
>gi|253998052|ref|YP_003050115.1| DNA repair protein RadC [Methylovorus sp. SIP3-4]
gi|253984731|gb|ACT49588.1| DNA repair protein RadC [Methylovorus sp. SIP3-4]
Length = 224
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 51/122 (41%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G +AL+ E+L + L + K +A+ LL+ F +L G+F A L +
Sbjct: 10 ERPREKLLTQGSSALSDAELLAIFLRVGVTGKSAVDLARELLQVFGSLNGIFAASLEQIS 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G ++L+ + S+R L + + Q + F F
Sbjct: 70 RIKGMGSSKYVQLQAIFEMSRRALTEEMQARDVMNSPQQVRDFLSLKLGGLPREVFLVIF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|148560082|ref|YP_001259197.1| DNA repair protein RadC [Brucella ovis ATCC 25840]
gi|254706546|ref|ZP_05168374.1| DNA repair protein RadC [Brucella pinnipedialis M163/99/10]
gi|256160029|ref|ZP_05457727.1| DNA repair protein RadC [Brucella ceti M490/95/1]
gi|256255238|ref|ZP_05460774.1| DNA repair protein RadC [Brucella ceti B1/94]
gi|261222434|ref|ZP_05936715.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261314006|ref|ZP_05953203.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|265998402|ref|ZP_06110959.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|148371339|gb|ABQ61318.1| DNA repair protein RadC [Brucella ovis ATCC 25840]
gi|260921018|gb|EEX87671.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261303032|gb|EEY06529.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|262553009|gb|EEZ08860.1| conserved hypothetical protein [Brucella ceti M490/95/1]
Length = 246
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K Y GH +RL+ RF +ALA YE+LEL+LFR I R DTK IAKALL RF ++
Sbjct: 25 KLEKPHYAGHRDRLKQRFRDA-PDALADYELLELLLFRAIRRADTKPIAKALLNRFGSIA 83
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
V AP +L+ EI G VALELKLV ++R ++ ++ L +
Sbjct: 84 EVLAAPENLIAEIPGAGPTVALELKLVEAIAKRSARSTVMEREVLGSWDKVINYCTAAMA 143
Query: 132 MKNANNFAYCFSI 144
+ F F
Sbjct: 144 FETREQFRILFLD 156
>gi|325982099|ref|YP_004294501.1| DNA repair protein RadC [Nitrosomonas sp. AL212]
gi|325531618|gb|ADZ26339.1| DNA repair protein RadC [Nitrosomonas sp. AL212]
Length = 224
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ LQKG + L+ E+L + L I K +A+ LL F +L VF A
Sbjct: 10 ERPREKLLQKGASTLSDTELLAIFLRTGISGKSAVDLARELLLHFGSLTNVFAASQSNFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ +G +L+ + ++R L + + + K F F
Sbjct: 70 QLPGMGMAKYAQLQAILEMARRALGEELKCGNAMNSPRLVRDFLRLSLANKQHEVFIGIF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|308070402|ref|YP_003872007.1| DNA repair protein radC [Paenibacillus polymyxa E681]
gi|305859681|gb|ADM71469.1| DNA repair protein radC [Paenibacillus polymyxa E681]
Length = 230
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 51/126 (40%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+ H R R+R + G +AL+ E+L ++L + + +A+ +L++ L + +
Sbjct: 12 LPHEERPRERMMTYGADALSNAELLAILLRTGTQNESSVHLAQRILQQAGNLRQLVDMSM 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L +I IG A++LK +R+ + ++ + + +F
Sbjct: 72 SELTQIKGIGDAKAIQLKASIELGRRLALSRHLETPVISCPRDVADLLFEQLRYLQKEHF 131
Query: 139 AYCFSI 144
F
Sbjct: 132 VCLFLN 137
>gi|313200117|ref|YP_004038775.1| DNA repair protein radc [Methylovorus sp. MP688]
gi|312439433|gb|ADQ83539.1| DNA repair protein RadC [Methylovorus sp. MP688]
Length = 224
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 51/122 (41%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G +AL+ E+L + L + K +A+ LL+ F +L G+F A L +
Sbjct: 10 ERPREKLLTQGSSALSDAELLAIFLRVGVTGKSAVDLARELLQVFGSLNGIFAASLEQIS 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G ++L+ + S+R L + + Q + F F
Sbjct: 70 RIKGMGSSKYVQLQAIFEMSRRALTEEMQARDVMNSPQQVRDFLSLKLGGLPREVFLVIF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|225852775|ref|YP_002733008.1| DNA repair protein RadC [Brucella melitensis ATCC 23457]
gi|256263739|ref|ZP_05466271.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|254764429|sp|C0RJP6|Y1330_BRUMB RecName: Full=UPF0758 protein BMEA_A1330
gi|225641140|gb|ACO01054.1| DNA repair protein RadC [Brucella melitensis ATCC 23457]
gi|263093798|gb|EEZ17803.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|326409305|gb|ADZ66370.1| DNA repair protein RadC [Brucella melitensis M28]
gi|326539014|gb|ADZ87229.1| DNA repair protein RadC [Brucella melitensis M5-90]
Length = 249
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K Y GH +RL+ RF +ALA YE+LEL+LFR I R DTK IAKALL RF ++
Sbjct: 25 KLEKPHYAGHRDRLKQRFRDA-PDALADYELLELLLFRAIRRADTKPIAKALLNRFGSIA 83
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
V AP +L+ EI G VALELKLV ++R ++ ++ L +
Sbjct: 84 EVLTAPENLIAEIPGAGPTVALELKLVEAIAKRSARSTVMEREVLGSWDKVINYCTAAMA 143
Query: 132 MKNANNFAYCFSI 144
+ F F
Sbjct: 144 FETREQFRILFLD 156
>gi|221640666|ref|YP_002526928.1| DNA repair protein RadC [Rhodobacter sphaeroides KD131]
gi|221161447|gb|ACM02427.1| DNA repair protein [Rhodobacter sphaeroides KD131]
Length = 254
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
Query: 2 EDFRMSKAPSKDSHLDYIG-HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
ED ++ P YI H RLR RF + G A+ YE+LEL+LFR IPR+D K +A
Sbjct: 19 EDEALA-VPLGARLPSYIADHRKRLRARFQEGGAAAMPDYELLELLLFRSIPRQDVKPLA 77
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
+ L+ RF L V A + L ++ +G+ VA +LK++ +QR+ +A + LT
Sbjct: 78 RRLIDRFGDLNRVVTADMARLLDVEGVGEAVAQDLKILEAVAQRMARARVMNQPVLTSWA 137
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
L + F +
Sbjct: 138 ALLDYCHTTMAHRATEQFRVLYLD 161
>gi|83950724|ref|ZP_00959457.1| DNA repair protein RadC [Roseovarius nubinhibens ISM]
gi|83838623|gb|EAP77919.1| DNA repair protein RadC [Roseovarius nubinhibens ISM]
Length = 250
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 10 PSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA 68
P YI H RLR+RF+Q G AL YE+LEL+LFR IPR+D K +A+ALL F
Sbjct: 22 PGDGRLPSYIRDHRQRLRERFMQGGAAALPDYELLELLLFRAIPRRDVKPLARALLDMFG 81
Query: 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
GV AP L + +G V ELKLV A+ R+ +A + ++ L
Sbjct: 82 DFNGVISAPPERLGALPGVGPAVICELKLVEAAAHRLARARVLHRPVMSGWDALLDYCRT 141
Query: 129 HYPMKNANNFAYCFSI 144
++ F F
Sbjct: 142 SMAHRDTEQFRIFFLD 157
>gi|254439250|ref|ZP_05052744.1| DNA repair protein RadC [Octadecabacter antarcticus 307]
gi|198254696|gb|EDY79010.1| DNA repair protein RadC [Octadecabacter antarcticus 307]
Length = 266
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 7/149 (4%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
L ++ K PS H RLR RFL G A+ YEILEL LFR IPR+D K +A
Sbjct: 35 LPSSKLGKQPS-----YLADHRKRLRHRFLTGGAAAMPDYEILELTLFRAIPRQDVKPLA 89
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
+ L++ F L GV AP+ L+ ++ +G VALELK++ + R+ +A + ++
Sbjct: 90 RLLIETFGDLNGVLSAPIARLERVHGVGPAVALELKVMETVTHRMARAKVMQRHVISSWD 149
Query: 121 PCLISVERHYPMKNANNFAYCFSI--NII 147
L ++ F F N++
Sbjct: 150 AMLDYCHTVMAHRDTEQFRVLFLDRKNVL 178
>gi|269103917|ref|ZP_06156614.1| DNA repair protein RadC [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268163815|gb|EEZ42311.1| DNA repair protein RadC [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 224
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 46/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G AL E+L + L I + +A LLK F +L + A +
Sbjct: 12 PREKLLARGAQALTDAELLAIFLRTGIAGMNAIELADFLLKEFGSLRALLSADQKTFCQH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ V ++R L+ L+ Q + ++ F F
Sbjct: 72 KGLGPAKYAQLQAVIAMNERHLEETLKRFDVLSSPQQTRNYLSHKLRDQHREVFFVLFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|121602861|ref|YP_989118.1| RadC family DNA repair protein [Bartonella bacilliformis KC583]
gi|120615038|gb|ABM45639.1| DNA repair protein, RadC family [Bartonella bacilliformis KC583]
Length = 265
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 71/137 (51%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
K + ++ Y GH RLR RFL NA+ YE LEL+LFR IPR DTK IAK L++RF
Sbjct: 36 KKKTSLTNNHYQGHRERLRKRFLDTKGNAIEDYEYLELLLFRTIPRADTKPIAKKLIERF 95
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
+L V GA +H LQEI G A++LK++S + R +A S + + L +
Sbjct: 96 GSLADVLGADIHRLQEIEGCGPASAIDLKIISAVAGRFARAQLSKRDIFSSWDKVLAYCK 155
Query: 128 RHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 156 AVMAHETREQFRILFLD 172
>gi|190891537|ref|YP_001978079.1| DNA repair protein [Rhizobium etli CIAT 652]
gi|226736627|sp|B3PXW5|Y1935_RHIE6 RecName: Full=UPF0758 protein RHECIAT_CH0001935
gi|190696816|gb|ACE90901.1| DNA repair protein [Rhizobium etli CIAT 652]
Length = 274
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 64/147 (43%), Positives = 86/147 (58%), Gaps = 3/147 (2%)
Query: 4 FRMSKAPSKDSHL-DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
+ P+ S Y GH RLRDRF ++G+ ALA YEILEL+LFRLIPR+DTK IAKA
Sbjct: 40 NARAALPASLSGPEHYHGHRERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIAKA 99
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
L+ RF +L GVFGAP LL E+ +G+ VAL+LKL+S + R LK+ K+ L+
Sbjct: 100 LIDRFGSLSGVFGAPAGLLTEVKGVGENVALDLKLISTVAHRTLKSEIRSKQVLSSWSSV 159
Query: 123 LISVERHYPMKNANNFAYCFSI--NII 147
+ + F F N++
Sbjct: 160 IQYCHAAMAHETREQFRILFLDKRNVL 186
>gi|172044490|sp|A4STD5|Y4229_AERS4 RecName: Full=UPF0758 protein ASA_4229
Length = 220
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 4/129 (3%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G L+ E+L + L + +++ LL++F +L + GA
Sbjct: 4 KEWPEDERPREKLLRQGPATLSDAELLAIFLRTGVNGLSAVDLSRQLLQQFGSLRALLGA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ +G +L+ V +R L LT Q ++
Sbjct: 64 DQGAFCHAHGLGPAKYAQLQAVLEMGKRHLAEQLQRGDALTSPQLTRDYLQAQL----RE 119
Query: 137 NFAYCFSIN 145
FA N
Sbjct: 120 VFALLLLDN 128
>gi|257094371|ref|YP_003168012.1| DNA repair protein RadC [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
gi|257046895|gb|ACV36083.1| DNA repair protein RadC [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
Length = 225
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 42/126 (33%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R+R L +G +L+ E+L + L K +A+ LL RF L +F A
Sbjct: 6 WPEDERPRERLLAQGAASLSDGELLAIFLRVGSRGKSAVDLARELLGRFGGLTRLFAASQ 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+ +G +L+ V ++R L + H F
Sbjct: 66 LDFSAVPGMGPAKYAQLQAVVELARRALAEEMKHGIAFASPGAVRDYLRLHLAGLQHEVF 125
Query: 139 AYCFSI 144
+
Sbjct: 126 FALWLD 131
>gi|240850644|ref|YP_002972044.1| DNA repair protein RadC [Bartonella grahamii as4aup]
gi|240267767|gb|ACS51355.1| DNA repair protein RadC [Bartonella grahamii as4aup]
Length = 264
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 3 DFRMSKAPSKDSHLD--YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
R S+AP K++ L Y GH RLR R+L+ NA+ YE LEL+LFR IPR +TK IA
Sbjct: 28 SERKSEAPQKNAQLHKHYQGHRERLRKRYLKSKGNAIEDYEYLELLLFRTIPRANTKPIA 87
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
K L+ RF +L V GA +H LQEI G A++LK++S + R+ +A + +
Sbjct: 88 KNLIARFGSLADVLGADIHRLQEIPGCGPATAIDLKIISDVAGRLARAQLFKRDIFSSWD 147
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
L + + F F
Sbjct: 148 KVLAYCKAVMAHETREQFRILFLD 171
>gi|126463593|ref|YP_001044707.1| DNA repair protein RadC [Rhodobacter sphaeroides ATCC 17029]
gi|126105257|gb|ABN77935.1| DNA repair protein RadC [Rhodobacter sphaeroides ATCC 17029]
Length = 223
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 2 EDFRMSKAPSKDSHLDYIG-HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
ED ++ P YI H RLR RF + G A+ YE+LEL+LFR IPR+D K +A
Sbjct: 19 EDEALA-VPLGARLPSYIADHRKRLRARFQEGGAAAMPDYELLELLLFRSIPRQDVKPLA 77
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
+ L+ RF L V A + L +++ +G+ VA +LK++ +QR+ +A + LT
Sbjct: 78 RRLIDRFGDLNRVVTADMARLLDVDGVGEAVAQDLKILEAVAQRMARARVMNQPVLTSWA 137
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
L + F +
Sbjct: 138 ALLDYCHTTMAHRATEQFRVLYLD 161
>gi|163843546|ref|YP_001627950.1| DNA repair protein RadC [Brucella suis ATCC 23445]
gi|163674269|gb|ABY38380.1| DNA repair protein RadC [Brucella suis ATCC 23445]
Length = 249
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K Y GH +RL+ RF +ALA YE+LEL+LFR I R DTK IAKALL RF ++
Sbjct: 25 KLEKPHYAGHRDRLKQRFRDA-PDALADYELLELLLFRAIRRADTKPIAKALLNRFGSIA 83
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
V AP +L+ EI G VALELKLV ++R ++ ++ L +
Sbjct: 84 EVLAAPENLIAEIPGAGPTVALELKLVEAIAKRSARSTVMEREVLGSWDKVINYCTAAMA 143
Query: 132 MKNANNFAYCFSI 144
+ F F
Sbjct: 144 FETREQFRILFLD 156
>gi|17987001|ref|NP_539635.1| DNA repair protein RadC [Brucella melitensis bv. 1 str. 16M]
gi|23502159|ref|NP_698286.1| DNA repair protein RadC [Brucella suis 1330]
gi|62290189|ref|YP_221982.1| DNA repair protein RadC [Brucella abortus bv. 1 str. 9-941]
gi|82700110|ref|YP_414684.1| DNA repair protein RadC [Brucella melitensis biovar Abortus 2308]
gi|161619234|ref|YP_001593121.1| DNA repair protein RadC [Brucella canis ATCC 23365]
gi|189024423|ref|YP_001935191.1| DNA repair protein RadC [Brucella abortus S19]
gi|225627749|ref|ZP_03785786.1| DNA repair protein RadC [Brucella ceti str. Cudo]
gi|237815696|ref|ZP_04594693.1| DNA repair protein RadC [Brucella abortus str. 2308 A]
gi|254689493|ref|ZP_05152747.1| DNA repair protein RadC [Brucella abortus bv. 6 str. 870]
gi|254693980|ref|ZP_05155808.1| DNA repair protein RadC [Brucella abortus bv. 3 str. Tulya]
gi|254697631|ref|ZP_05159459.1| DNA repair protein RadC [Brucella abortus bv. 2 str. 86/8/59]
gi|254702017|ref|ZP_05163845.1| DNA repair protein RadC [Brucella suis bv. 5 str. 513]
gi|254704558|ref|ZP_05166386.1| DNA repair protein RadC [Brucella suis bv. 3 str. 686]
gi|254710344|ref|ZP_05172155.1| DNA repair protein RadC [Brucella pinnipedialis B2/94]
gi|254714340|ref|ZP_05176151.1| DNA repair protein RadC [Brucella ceti M644/93/1]
gi|254717239|ref|ZP_05179050.1| DNA repair protein RadC [Brucella ceti M13/05/1]
gi|254730521|ref|ZP_05189099.1| DNA repair protein RadC [Brucella abortus bv. 4 str. 292]
gi|256031838|ref|ZP_05445452.1| DNA repair protein RadC [Brucella pinnipedialis M292/94/1]
gi|256044923|ref|ZP_05447826.1| DNA repair protein RadC [Brucella melitensis bv. 1 str. Rev.1]
gi|256061358|ref|ZP_05451502.1| DNA repair protein RadC [Brucella neotomae 5K33]
gi|256113838|ref|ZP_05454631.1| DNA repair protein RadC [Brucella melitensis bv. 3 str. Ether]
gi|256257741|ref|ZP_05463277.1| DNA repair protein RadC [Brucella abortus bv. 9 str. C68]
gi|256369702|ref|YP_003107212.1| DNA repair protein RadC [Brucella microti CCM 4915]
gi|260168972|ref|ZP_05755783.1| DNA repair protein RadC [Brucella sp. F5/99]
gi|260546732|ref|ZP_05822471.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260565477|ref|ZP_05835961.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|260566199|ref|ZP_05836669.1| DNA repair protein RadC [Brucella suis bv. 4 str. 40]
gi|260755015|ref|ZP_05867363.1| DNA repair protein RadC [Brucella abortus bv. 6 str. 870]
gi|260758231|ref|ZP_05870579.1| DNA repair protein RadC [Brucella abortus bv. 4 str. 292]
gi|260762058|ref|ZP_05874401.1| DNA repair protein RadC [Brucella abortus bv. 2 str. 86/8/59]
gi|260884026|ref|ZP_05895640.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261214271|ref|ZP_05928552.1| DNA repair protein RadC [Brucella abortus bv. 3 str. Tulya]
gi|261219056|ref|ZP_05933337.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261317907|ref|ZP_05957104.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261322116|ref|ZP_05961313.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261325359|ref|ZP_05964556.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261752583|ref|ZP_05996292.1| DNA repair protein RadC [Brucella suis bv. 5 str. 513]
gi|261755242|ref|ZP_05998951.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261758465|ref|ZP_06002174.1| DNA repair protein RadC [Brucella sp. F5/99]
gi|265988936|ref|ZP_06101493.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265991349|ref|ZP_06103906.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265995186|ref|ZP_06107743.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|294852618|ref|ZP_06793291.1| DNA repair protein radC [Brucella sp. NVSL 07-0026]
gi|297248579|ref|ZP_06932297.1| DNA repair protein radC [Brucella abortus bv. 5 str. B3196]
gi|306840253|ref|ZP_07473027.1| DNA repair protein RadC [Brucella sp. BO2]
gi|306844186|ref|ZP_07476779.1| DNA repair protein RadC [Brucella sp. BO1]
gi|54039000|sp|P65956|Y1283_BRUSU RecName: Full=UPF0758 protein BR1283
gi|54041782|sp|P65955|Y718_BRUME RecName: Full=UPF0758 protein BMEI0718
gi|73913733|sp|Q57CL3|Y1284_BRUAB RecName: Full=UPF0758 protein BruAb1_1284
gi|123547434|sp|Q2YRF9|Y1301_BRUA2 RecName: Full=UPF0758 protein BAB1_1301
gi|238687216|sp|A9M5U5|Y1306_BRUC2 RecName: Full=UPF0758 protein BCAN_A1306
gi|238689385|sp|B2S6C0|Y1214_BRUA1 RecName: Full=UPF0758 protein BAbS19_I12140
gi|17982652|gb|AAL51899.1| DNA repair protein radc homolog [Brucella melitensis bv. 1 str.
16M]
gi|23348123|gb|AAN30201.1| DNA repair protein RadC [Brucella suis 1330]
gi|62196321|gb|AAX74621.1| RadC, DNA repair protein RadC [Brucella abortus bv. 1 str. 9-941]
gi|82616211|emb|CAJ11257.1| DNA repair protein RadC [Brucella melitensis biovar Abortus 2308]
gi|161336045|gb|ABX62350.1| DNA repair protein RadC [Brucella canis ATCC 23365]
gi|189019995|gb|ACD72717.1| DNA repair protein RadC [Brucella abortus S19]
gi|225617754|gb|EEH14799.1| DNA repair protein RadC [Brucella ceti str. Cudo]
gi|237788994|gb|EEP63205.1| DNA repair protein RadC [Brucella abortus str. 2308 A]
gi|255999864|gb|ACU48263.1| DNA repair protein RadC [Brucella microti CCM 4915]
gi|260095782|gb|EEW79659.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260151545|gb|EEW86639.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|260155717|gb|EEW90797.1| DNA repair protein RadC [Brucella suis bv. 4 str. 40]
gi|260668549|gb|EEX55489.1| DNA repair protein RadC [Brucella abortus bv. 4 str. 292]
gi|260672490|gb|EEX59311.1| DNA repair protein RadC [Brucella abortus bv. 2 str. 86/8/59]
gi|260675123|gb|EEX61944.1| DNA repair protein RadC [Brucella abortus bv. 6 str. 870]
gi|260873554|gb|EEX80623.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260915878|gb|EEX82739.1| DNA repair protein RadC [Brucella abortus bv. 3 str. Tulya]
gi|260924145|gb|EEX90713.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261294806|gb|EEX98302.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261297130|gb|EEY00627.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261301339|gb|EEY04836.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261738449|gb|EEY26445.1| DNA repair protein RadC [Brucella sp. F5/99]
gi|261742336|gb|EEY30262.1| DNA repair protein RadC [Brucella suis bv. 5 str. 513]
gi|261744995|gb|EEY32921.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262766299|gb|EEZ12088.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263002133|gb|EEZ14708.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|264661133|gb|EEZ31394.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|294821207|gb|EFG38206.1| DNA repair protein radC [Brucella sp. NVSL 07-0026]
gi|297175748|gb|EFH35095.1| DNA repair protein radC [Brucella abortus bv. 5 str. B3196]
gi|306275461|gb|EFM57198.1| DNA repair protein RadC [Brucella sp. BO1]
gi|306289780|gb|EFM60962.1| DNA repair protein RadC [Brucella sp. BO2]
Length = 249
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K Y GH +RL+ RF +ALA YE+LEL+LFR I R DTK IAKALL RF ++
Sbjct: 25 KLEKPHYAGHRDRLKQRFRDA-PDALADYELLELLLFRAIRRADTKPIAKALLNRFGSIA 83
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
V AP +L+ EI G VALELKLV ++R ++ ++ L +
Sbjct: 84 EVLAAPENLIAEIPGAGPTVALELKLVEAIAKRSARSTVMEREVLGSWDKVINYCTAAMA 143
Query: 132 MKNANNFAYCFSI 144
+ F F
Sbjct: 144 FETREQFRILFLD 156
>gi|209966646|ref|YP_002299561.1| DNA repair protein RadC, putative [Rhodospirillum centenum SW]
gi|209960112|gb|ACJ00749.1| DNA repair protein RadC, putative [Rhodospirillum centenum SW]
Length = 259
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ + Y GH RLR RFL++G AL YE+LEL+LF+ IPR+D K +AKALLK +L
Sbjct: 34 AGEDAPHYHGHRERLRARFLEQGAEALQDYELLELLLFQ-IPRRDVKPLAKALLKAHGSL 92
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
GV AP L+ + + LK+ R+ + K L+ Q L
Sbjct: 93 WGVVSAPADALRRQREMTEGAVAALKVAGAIGLRMARQEVLGKPVLSSWQKLLDYCAGAM 152
Query: 131 PMKNANNFAYCFSI 144
+ F F
Sbjct: 153 ANEPVEQFRILFLD 166
>gi|87120857|ref|ZP_01076749.1| DNA repair protein RadC [Marinomonas sp. MED121]
gi|86163695|gb|EAQ64968.1| DNA repair protein RadC [Marinomonas sp. MED121]
Length = 224
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ +++G AL+ E+L + L D +A+ ++ F +L + A
Sbjct: 10 QRPREKLIKQGAQALSDAELLAIFLRTGTQGVDAVELARRVVVHFGSLQALINASKAEFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G+ +L+ V S+R L + T ++ + + FA F
Sbjct: 70 ACLGLGEAKFAQLQAVVEMSKRYLGETLEKEDVFTCVDSVQHFLKAKLRLSSREVFAVMF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|254470509|ref|ZP_05083913.1| DNA repair protein RadC [Pseudovibrio sp. JE062]
gi|211960820|gb|EEA96016.1| DNA repair protein RadC [Pseudovibrio sp. JE062]
Length = 275
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 5 RMSKAPSKDSHL---DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+ + SK S Y GH RLR+RF + G N L YEILE++LF I + DTK +AK
Sbjct: 40 KPAARQSKTSKPVAKHYHGHRARLRERFEENGLNGLQSYEILEMLLFSSIKQGDTKPLAK 99
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
+LL +F + V AP L+E+ G R A +K + A+ KA + L+
Sbjct: 100 SLLAQFGSFAQVLAAPKQRLEEVPGCGPRTASFIKEIQAAAILYAKAQVVERDPLSSWSK 159
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
L V + F F
Sbjct: 160 VLEYVRAAMAHNDKEEFRILFLD 182
>gi|254784439|ref|YP_003071867.1| DNA repair protein RadC [Teredinibacter turnerae T7901]
gi|259551909|sp|C5BLG5|Y184_TERTT RecName: Full=UPF0758 protein TERTU_0184
gi|237685002|gb|ACR12266.1| DNA repair protein RadC [Teredinibacter turnerae T7901]
Length = 224
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L++G +AL+ E+L + L + +A+ LL F L + A
Sbjct: 10 ERPREKLLERGPDALSDAELLAIFLRTGCKGRSAVDLARELLSTFGGLRALLAADCKAFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G+ ++L+ V S+R L + Q + + + FA F
Sbjct: 70 QGLGLGEAKYVQLQAVLEMSKRHLGETLQRQTQFANSQSVKDFLNSQLRHRRSEVFAALF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|218458578|ref|ZP_03498669.1| DNA repair protein RadC [Rhizobium etli Kim 5]
Length = 261
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 64/149 (42%), Positives = 89/149 (59%), Gaps = 2/149 (1%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+ + R + S + Y GH RLRDRF ++G+ ALA YEILEL+LFRLIPR+DTK IA
Sbjct: 59 VPNARTALPASLSAPEHYHGHRERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIA 118
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
KAL++RF +L GVFGAP LL E+ +G+ VAL+LKL+S + R LK+ K+ L+
Sbjct: 119 KALIERFGSLSGVFGAPAALLTEVKGVGENVALDLKLISTVAHRTLKSEIRSKQVLSSWS 178
Query: 121 PCLISVERHYPMKNANNFAYCFSI--NII 147
+ + F F N++
Sbjct: 179 SVIQYCHAAMAHETREQFRILFLDKRNVL 207
>gi|254436013|ref|ZP_05049520.1| DNA repair protein RadC [Nitrosococcus oceani AFC27]
gi|207089124|gb|EDZ66396.1| DNA repair protein RadC [Nitrosococcus oceani AFC27]
Length = 230
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 49/124 (39%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ LQ+G NAL+ E+L + L + K +A+ LL+ F +L + A L
Sbjct: 15 HERPREKLLQRGPNALSDAELLAIFLRTGVAGKTAVDLARELLESFGSLRALLEADLKQF 74
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G +L+ +R L+ LT Q + F+
Sbjct: 75 CHAPGLGIAKYTQLQACLEMGRRHLEDTLKRGDVLTDPQTTQRYLVARLRAYPFEVFSCL 134
Query: 142 FSIN 145
F N
Sbjct: 135 FLDN 138
>gi|290477301|ref|YP_003470222.1| putative associated with replication fork, DNA repair protein
[Xenorhabdus bovienii SS-2004]
gi|289176655|emb|CBJ83464.1| putative associated with replication fork, DNA repair protein
[Xenorhabdus bovienii SS-2004]
Length = 230
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 46/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L E+L + L +A+ LLK F +L + A
Sbjct: 18 PREKLLAYGAVSLTDAELLAIFLRTGTRGIPVVQMAEHLLKSFGSLYHLLSADYADFCSH 77
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ VS ++R + + + ++ ++ ++ F F
Sbjct: 78 KGMGLCKYVQLQAVSELAKRFFSSQFIHEDVMSSPVATQNYLQDLLSWQDREVFVVLFLT 137
Query: 145 N 145
N
Sbjct: 138 N 138
>gi|99079849|ref|YP_612003.1| DNA repair protein RadC [Ruegeria sp. TM1040]
gi|99036129|gb|ABF62741.1| DNA repair protein RadC [Ruegeria sp. TM1040]
Length = 258
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 12 KDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ YI H RLR+RF+ G L YE+LELILFR IPRKD K +A LL F L
Sbjct: 32 QGRIPSYIRDHRARLRERFMSAGAIGLPDYELLELILFRSIPRKDVKPLAHQLLASFGDL 91
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
V A L E+ IG+ V +LK+ A+QR+ ++ ++ + L
Sbjct: 92 NRVVTASPERLAEVQGIGQAVICDLKIFEAAAQRMARSRVLQRQVIASWDALLDYCHTAM 151
Query: 131 PMKNANNFAYCFSI--NII 147
+ F + NI+
Sbjct: 152 AHRETEQFRVLYLDRKNIL 170
>gi|237745564|ref|ZP_04576044.1| DNA repair protein radC [Oxalobacter formigenes HOxBLS]
gi|229376915|gb|EEO27006.1| DNA repair protein radC [Oxalobacter formigenes HOxBLS]
Length = 224
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 55/126 (43%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
H R R+R ++ G L+ E+L + L K + + ++ F +L G+F A L
Sbjct: 6 WPSHERPRERLIKGGPEQLSDAELLAIFLRTGTSGKSAVDLGREIMMHFGSLSGLFAARL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
++N +G +L+ + ++R+L + LT + + ++ ++ + +F
Sbjct: 66 KDFSDLNGVGPAKYAQLQAILELARRLLAEDLQSGIALTSSEKVMNYLQLYFSRQAHESF 125
Query: 139 AYCFSI 144
F
Sbjct: 126 IVLFLD 131
>gi|91204972|ref|YP_537327.1| DNA repair protein RadC [Rickettsia bellii RML369-C]
gi|91068516|gb|ABE04238.1| DNA repair protein RadC [Rickettsia bellii RML369-C]
Length = 249
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+ D + + P YIGH R+++RF+ G + YE+LEL+LF IPRKD K +A
Sbjct: 17 VPDIAIKEEPD----PHYIGHRKRVKERFVTSGAANFSDYELLELMLFSSIPRKDVKPLA 72
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
K LL+ F ++ + L I+ + + + +V R LK K +
Sbjct: 73 KKLLENFNSITDLINIDKERLLSISGTNENLYINFAIVRELINRALKQKIINKNIIASWG 132
Query: 121 PCLISVERHYPMKNANNFAYCFSI--NII 147
+ ++ + F F NI+
Sbjct: 133 SLIDYLKVNMGNMRLEQFRVLFLNKKNIL 161
>gi|89052777|ref|YP_508228.1| DNA repair protein RadC [Jannaschia sp. CCS1]
gi|88862326|gb|ABD53203.1| DNA repair protein RadC [Jannaschia sp. CCS1]
Length = 257
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 2/146 (1%)
Query: 4 FRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
R + PSK + H +RLR RF G +A+ YE+LE++L+ I R DTK +AK L
Sbjct: 24 PRKAGGPSKGAEAHRHKHRDRLRQRFTDGGADAVPDYELLEMVLYGAILRGDTKPLAKRL 83
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
+ RF L V AP+ L+E+ +G +V +LKL+ R+ +A K L+ L
Sbjct: 84 IDRFGDLNRVLAAPVARLKEVEGVGDKVVFQLKLIEATGHRMARAKVMQKPILSSWDALL 143
Query: 124 ISVERHYPMKNANNFAYCFSI--NII 147
+ ++ F + N++
Sbjct: 144 AYCQTAMAHRDLEQFRVLYLDRKNVL 169
>gi|218672510|ref|ZP_03522179.1| DNA repair protein RadC [Rhizobium etli GR56]
Length = 274
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 64/147 (43%), Positives = 87/147 (59%), Gaps = 3/147 (2%)
Query: 4 FRMSKAPSKDSHL-DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
+ P+ S Y GH RLRDRF ++G+ ALA YEILEL+LFRLIPR+DTK IAKA
Sbjct: 40 NARAALPASLSGPEHYHGHRERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIAKA 99
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
L++RF +L GVFGAP LL E+ +G+ VAL+LKL+S + R LK+ K+ L+
Sbjct: 100 LIERFGSLSGVFGAPAALLTEVKGVGENVALDLKLISTVAHRTLKSEIRSKQVLSSWSSV 159
Query: 123 LISVERHYPMKNANNFAYCFSI--NII 147
+ + F F N++
Sbjct: 160 IQYCHAAMAHETREQFRILFLDKRNVL 186
>gi|77163771|ref|YP_342296.1| DNA repair protein RadC [Nitrosococcus oceani ATCC 19707]
gi|123595151|sp|Q3JEI0|Y236_NITOC RecName: Full=UPF0758 protein Noc_0236
gi|76882085|gb|ABA56766.1| DNA replication and repair protein RadC [Nitrosococcus oceani ATCC
19707]
Length = 224
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 49/124 (39%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ LQ+G NAL+ E+L + L + K +A+ LL+ F +L + A L
Sbjct: 9 HERPREKLLQRGPNALSDAELLAIFLRTGVAGKTAVDLARELLESFGSLRALLEADLKQF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G +L+ +R L+ LT Q + F+
Sbjct: 69 CHAPGLGIAKYTQLQACLEMGRRHLEDTLKRGDVLTDPQTTQRYLVARLRAYPFEVFSCL 128
Query: 142 FSIN 145
F N
Sbjct: 129 FLDN 132
>gi|163868311|ref|YP_001609520.1| DNA repair protein RadC [Bartonella tribocorum CIP 105476]
gi|161017967|emb|CAK01525.1| DNA repair protein RadC [Bartonella tribocorum CIP 105476]
Length = 270
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 3 DFRMSKAPSKDSHL--DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
R S+ P K++ L Y GH RLR R+L+ NA+ YE LEL+LFR IPR +TK IA
Sbjct: 34 SERKSEEPKKNTQLDKHYQGHRERLRKRYLKSKGNAIEDYEYLELLLFRTIPRANTKPIA 93
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
K L+ F +L V GA +H LQE+ G A++LK++S + R+ +A + +
Sbjct: 94 KNLIAHFGSLADVLGADIHRLQEVQGCGPATAIDLKIISDVAGRLARAELFKRDIFSSWD 153
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
L + + F F
Sbjct: 154 KVLAYCKAVMAHETREQFRILFLD 177
>gi|82703257|ref|YP_412823.1| DNA repair protein RadC [Nitrosospira multiformis ATCC 25196]
gi|123544109|sp|Q2Y740|Y2138_NITMU RecName: Full=UPF0758 protein Nmul_A2138
gi|82411322|gb|ABB75431.1| DNA replication and repair protein RadC [Nitrosospira multiformis
ATCC 25196]
Length = 224
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 48/128 (37%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L+ G L+ E+L + L I K +A+ LLKRF L G+F A
Sbjct: 4 SDWPEAERPREKLLKNGPAYLSDAELLAIFLRTGIAGKSAVDLARELLKRFRGLTGLFAA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
++ +G +L+ V ++R L+ + P + K
Sbjct: 64 DQGAFCQVPGMGPAKFAQLQAVLEMARRALEEELKSSDAMDSPGPVRAFLRLSLEGKEHE 123
Query: 137 NFAYCFSI 144
F F
Sbjct: 124 VFVSIFLD 131
>gi|254511714|ref|ZP_05123781.1| DNA repair protein RadC [Rhodobacteraceae bacterium KLH11]
gi|221535425|gb|EEE38413.1| DNA repair protein RadC [Rhodobacteraceae bacterium KLH11]
Length = 251
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 1/143 (0%)
Query: 3 DFRMSKAPSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
D ++ YI H RLR+RF+ G A+ YE+LEL LFR IPR+D K +A+
Sbjct: 16 DEAPAQPLPTGRLPSYIKDHRKRLRERFMSGGATAMPDYELLELALFRSIPRQDVKPLAR 75
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
AL+ F V AP L++I +G V +LK++ + R+ +A + L+
Sbjct: 76 ALMDTFGDFNRVLTAPEERLRQIKGVGDTVITDLKILEACAHRMARARVMQRHVLSGWDA 135
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
L + F +
Sbjct: 136 LLDYCHTTMAHREIEQFRVFYLD 158
>gi|157827698|ref|YP_001496762.1| DNA repair protein RadC [Rickettsia bellii OSU 85-389]
gi|157803002|gb|ABV79725.1| DNA repair protein RadC [Rickettsia bellii OSU 85-389]
Length = 249
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+ D + + P YIGH R+++RF+ G + YE+LEL+LF IPRKD K +A
Sbjct: 17 VPDIAIKEEPD----PHYIGHRKRVKERFVTSGAANFSDYELLELMLFSSIPRKDVKPLA 72
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
K LL+ F ++ + L I+ + + + +V R LK K +
Sbjct: 73 KKLLENFNSITDLINIDKERLLSISGTNENLYINFAIVRELINRALKQKIINKNIIASWG 132
Query: 121 PCLISVERHYPMKNANNFAYCFSI--NII 147
+ ++ + F F NI+
Sbjct: 133 SLIDYLKVNMGNMRLEQFRVLFLNKKNIL 161
>gi|218510678|ref|ZP_03508556.1| DNA repair protein RadC [Rhizobium etli Brasil 5]
Length = 274
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 87/148 (58%), Gaps = 2/148 (1%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+ R + S Y GH RLRDRF ++G+ ALA YEILEL+LFRLIPR+DTK IAK
Sbjct: 39 PNARTALPASLSGPEHYHGHRERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIAK 98
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
AL++RF +L GVFGAP LL E+ +G+ VAL+LKL+S + R LK+ K+ L+
Sbjct: 99 ALIERFGSLSGVFGAPAALLTEVKGVGENVALDLKLISTVAHRTLKSEIRSKQVLSSWSS 158
Query: 122 CLISVERHYPMKNANNFAYCFSI--NII 147
+ + F F N++
Sbjct: 159 VIQYCHAAMAHETREQFRILFLDKRNVL 186
>gi|170747019|ref|YP_001753279.1| DNA repair protein RadC [Methylobacterium radiotolerans JCM 2831]
gi|170653541|gb|ACB22596.1| DNA repair protein RadC [Methylobacterium radiotolerans JCM 2831]
Length = 248
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 67/138 (48%)
Query: 7 SKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR 66
+ +P + Y GH +RLR++F G +AL YE+LEL+LFR IPR+D K +AKAL+ R
Sbjct: 18 APSPVEKEAPHYHGHRDRLREKFATAGADALPDYELLELVLFRAIPRRDVKPLAKALVAR 77
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
F + V A L E+ + VA +LK++ A++R+ + + L +
Sbjct: 78 FGSFAEVVSAEPARLMEVEGVSAGVASDLKVIEAAARRLARGAIRERALLGSWSALHEYL 137
Query: 127 ERHYPMKNANNFAYCFSI 144
F F
Sbjct: 138 RATMAFAPREEFRVLFLD 155
>gi|327192095|gb|EGE59073.1| DNA repair protein RadC [Rhizobium etli CNPAF512]
Length = 274
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 64/147 (43%), Positives = 87/147 (59%), Gaps = 3/147 (2%)
Query: 4 FRMSKAPSKDSHL-DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
+ P+ S Y GH RLRDRF ++G+ ALA YEILEL+LFRLIPR+DTK IAKA
Sbjct: 40 NARAALPASLSGPEHYHGHRERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIAKA 99
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
L++RF +L GVFGAP LL E+ +G+ VAL+LKL+S + R LK+ K+ L+
Sbjct: 100 LIERFGSLSGVFGAPAALLTEVKGVGENVALDLKLISTVAHRTLKSEIRSKQVLSSWSSV 159
Query: 123 LISVERHYPMKNANNFAYCFSI--NII 147
+ + F F N++
Sbjct: 160 IQYCHAAMAHETREQFRILFLDKRNVL 186
>gi|237747755|ref|ZP_04578235.1| DNA repair protein radC [Oxalobacter formigenes OXCC13]
gi|229379117|gb|EEO29208.1| DNA repair protein radC [Oxalobacter formigenes OXCC13]
Length = 224
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 52/123 (42%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H+R R+R ++ G L+ E+L + L K + + ++ F +L +F A L
Sbjct: 9 HDRPRERLIKGGPQYLSDAELLAIFLRTGTSGKSAVDLGREIMMHFGSLSRLFSAQLKDF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
++N IG +L+ + ++R+L + L+ + ++ ++ +F
Sbjct: 69 SDLNGIGPAKFAQLQAIVELARRLLAEDLQNGVTLSSSDKVMNYLQLYFSRLTHESFVVL 128
Query: 142 FSI 144
Sbjct: 129 HLD 131
>gi|293390968|ref|ZP_06635302.1| DNA repair protein RadC [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290951502|gb|EFE01621.1| DNA repair protein RadC [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 219
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G AL E+L + L I ++K +L+ F +L + A +
Sbjct: 7 PREKLLKYGAAALTDDELLAIFLRTGIKDCPVMQLSKNVLQHFGSLRELISANQKQFCAV 66
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG ++L+ + ++R L A T + ++ F F
Sbjct: 67 KGIGITQFIQLQACTEMTRRYLFAELKETHCFTSPDIVKMYLQTELANTEREIFMVLFLD 126
Query: 145 N 145
N
Sbjct: 127 N 127
>gi|138896185|ref|YP_001126638.1| DNA repair protein RadC [Geobacillus thermodenitrificans NG80-2]
gi|196250140|ref|ZP_03148834.1| DNA repair protein RadC [Geobacillus sp. G11MC16]
gi|166218780|sp|A4IRD9|Y2548_GEOTN RecName: Full=UPF0758 protein GTNG_2548
gi|134267698|gb|ABO67893.1| DNA repair protein [Geobacillus thermodenitrificans NG80-2]
gi|196210324|gb|EDY05089.1| DNA repair protein RadC [Geobacillus sp. G11MC16]
Length = 226
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 51/121 (42%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R L G +L+ +E+L ++L + +A+ +L+ F L + A + +
Sbjct: 13 RPRERLLASGPESLSDHELLAILLRTGTKDESVVQLAQRVLQHFEGLRLLKDATVEEMTS 72
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I IG A+++ +RI ++ ++ + + + V + +F +
Sbjct: 73 IKGIGPTKAVQILAALELGRRIHQSGYNDRYVIRCPEDGAKYVMEDMRFLSQEHFVAIYL 132
Query: 144 I 144
Sbjct: 133 N 133
>gi|71066389|ref|YP_265116.1| DNA repair protein RadC [Psychrobacter arcticus 273-4]
gi|123748093|sp|Q4FQM6|Y1834_PSYA2 RecName: Full=UPF0758 protein Psyc_1834
gi|71039374|gb|AAZ19682.1| probable DNA repair protein RadC [Psychrobacter arcticus 273-4]
Length = 227
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 49/131 (37%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+R R++ L+ G L+ EIL + L + +A+ L+++F +L + A
Sbjct: 4 KDWHEDDRPREKLLKFGAAHLSDAEILAIFLRTGTQSQSAIDLARHLIEQFGSLAELLAA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
P + + IG ++ +R L + + L Q + H +
Sbjct: 64 PQETVLACHGIGPAKYAQILASLEIGRRYLDSQLKTGQGLGRSQMVKDYISTHLRGEPRE 123
Query: 137 NFAYCFSINII 147
FA N +
Sbjct: 124 VFAVLCLDNAL 134
>gi|295688455|ref|YP_003592148.1| DNA repair protein RadC [Caulobacter segnis ATCC 21756]
gi|295430358|gb|ADG09530.1| DNA repair protein RadC [Caulobacter segnis ATCC 21756]
Length = 256
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 70/142 (49%)
Query: 3 DFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
+ +K K +H + GH +RLR R G AL YE+LEL LFR PR D K +AKA
Sbjct: 22 EAAPAKPARKSAHAHHAGHRDRLRQRAKTGGFVALPDYELLELYLFRTYPRGDVKPLAKA 81
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
LL RF + GGV GA + L + +G+ A++LKL+ A+ R + + ++
Sbjct: 82 LLNRFGSFGGVLGATIEELATVPGVGETAAMDLKLLHEATLRAGRDKIVKRPVISSWSAL 141
Query: 123 LISVERHYPMKNANNFAYCFSI 144
L V ++ F F
Sbjct: 142 LGYVRVALANESREQFRVLFLD 163
>gi|119475390|ref|ZP_01615743.1| DNA repair protein RadC [marine gamma proteobacterium HTCC2143]
gi|119451593|gb|EAW32826.1| DNA repair protein RadC [marine gamma proteobacterium HTCC2143]
Length = 224
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 44/126 (34%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R + L++G +L+ E+L + L P +A+ LL+ F L + A
Sbjct: 6 WPEAERPRGKLLKQGAASLSDAELLAIFLRTGTPGMTAVDLARQLLQNFGGLRALLSASA 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+ +G +L+ V S R L LT Q + K F
Sbjct: 66 EQFCQGRGLGLAKYTQLQAVMEMSHRNLYETLERSDCLTSSQLTRRYLLSCLRDKQHEQF 125
Query: 139 AYCFSI 144
A F
Sbjct: 126 ACLFLD 131
>gi|134095642|ref|YP_001100717.1| DNA repair protein RadC [Herminiimonas arsenicoxydans]
gi|166218782|sp|A4G7V9|Y2468_HERAR RecName: Full=UPF0758 protein HEAR2468
gi|133739545|emb|CAL62596.1| DNA repair protein RadC homolog [Herminiimonas arsenicoxydans]
Length = 224
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 50/126 (39%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R+R ++ G L+ E+L + L + K + + ++ F +L G+F A L
Sbjct: 6 WPEEQRPRERLIRHGAAILSDAELLAVFLRVGVTGKSAVDLGRDMVAHFGSLNGLFSATL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+ +IN +G +L+ V ++R L L Q ++ + +F
Sbjct: 66 NDFSKINGLGPAKYAQLQAVLELARRSLCEELQAGVALNSPQAVKQYLQLLLSGRAYESF 125
Query: 139 AYCFSI 144
F
Sbjct: 126 VILFLD 131
>gi|119897428|ref|YP_932641.1| DNA repair protein RadC [Azoarcus sp. BH72]
gi|166218773|sp|A1K4J9|Y1137_AZOSB RecName: Full=UPF0758 protein azo1137
gi|119669841|emb|CAL93754.1| DNA repair protein radC homolog [Azoarcus sp. BH72]
Length = 225
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 44/126 (34%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R++ L +G NAL+ E+L L L I + +A+ L+ RF TL + A
Sbjct: 6 WPEDERPREKLLSRGANALSDAELLALFLRVGIRGRTAVDLARDLIARFGTLTRLCSATS 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
I +G +L+ V ++R L + + + F
Sbjct: 66 SEFAAIPGMGLAKYAQLQAVMELARRALSETLCARDLFDSPEAVRDWLRLRLGHLPHETF 125
Query: 139 AYCFSI 144
Sbjct: 126 CVLLLD 131
>gi|56421153|ref|YP_148471.1| DNA repair protein RadC [Geobacillus kaustophilus HTA426]
gi|73913735|sp|Q5KWN3|Y2618_GEOKA RecName: Full=UPF0758 protein GK2618
gi|56380995|dbj|BAD76903.1| DNA repair protein [Geobacillus kaustophilus HTA426]
Length = 226
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 50/121 (41%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R L G +L+ +E++ ++L + +A+ LL+ F L + A + +
Sbjct: 13 RPRERLLSSGPESLSDHELIAILLRTGTKEESVVQLAQRLLRHFEGLRPLKDATVEEMTN 72
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I IG A+++ +RI ++ + + + + V + +F +
Sbjct: 73 IKGIGPTKAVQILAALELGRRIHQSGCADRYVIRCPEDGAKYVMEDMRFLSQEHFVAIYL 132
Query: 144 I 144
Sbjct: 133 N 133
>gi|221235698|ref|YP_002518135.1| DNA repair protein RadC [Caulobacter crescentus NA1000]
gi|220964871|gb|ACL96227.1| DNA repair protein radC [Caulobacter crescentus NA1000]
Length = 221
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 70/137 (51%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
K K H ++GH RLR+R + G AL YE++EL LFR PR D K +AKALL RF
Sbjct: 28 KPARKSVHAHHLGHRERLRERAAKGGFVALPDYELIELFLFRTFPRGDVKPLAKALLTRF 87
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
+L GV GA + L+ + +G+ A++LKL+ + R + + + ++ L V
Sbjct: 88 GSLDGVLGATVEELRTVQGVGEAAAMDLKLLHEVALRAGRDKIAKRPVISSWSALLAYVR 147
Query: 128 RHYPMKNANNFAYCFSI 144
++ F F
Sbjct: 148 VALANESREQFRVLFLD 164
>gi|93006943|ref|YP_581380.1| DNA repair protein RadC [Psychrobacter cryohalolentis K5]
gi|123386568|sp|Q1Q8V7|Y2119_PSYCK RecName: Full=UPF0758 protein Pcryo_2119
gi|92394621|gb|ABE75896.1| DNA repair protein RadC [Psychrobacter cryohalolentis K5]
Length = 227
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 48/131 (36%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+R R++ L+ G L+ EIL + L + +A+ L+++F +L + A
Sbjct: 4 KDWHEDDRPREKLLKFGAAHLSDAEILAIFLRTGTQSQSAIELARHLIEQFGSLAELLAA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
P + + IG ++ +R L + + L Q + +
Sbjct: 64 PQETVLACHGIGPAKYAQILASLEMGRRYLDSQLKTGQGLGRSQMVKDYISTQLRGEPRE 123
Query: 137 NFAYCFSINII 147
FA N +
Sbjct: 124 VFAVLCLDNAL 134
>gi|89067385|ref|ZP_01154898.1| DNA repair protein RadC [Oceanicola granulosus HTCC2516]
gi|89046954|gb|EAR53008.1| DNA repair protein RadC [Oceanicola granulosus HTCC2516]
Length = 255
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 7 SKAPSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
P+ Y+ H RLR RF+ G A+ YE+LEL+LFR IPR+D K +A+A+L+
Sbjct: 24 PAGPAGGRLPSYLKDHRKRLRARFMAGGAAAVPDYELLELVLFRAIPRRDVKPLARAMLE 83
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
V AP L I+ + V ELK+V A+ R+ ++ +K ++ Q L
Sbjct: 84 ELGDFNAVLSAPPARLARIDGVKDAVICELKIVEAAAHRLARSRVIDRKVVSSWQALLDY 143
Query: 126 VERHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 144 CHTTMAHRETEQFRILFLD 162
>gi|88813088|ref|ZP_01128330.1| DNA repair protein RadC [Nitrococcus mobilis Nb-231]
gi|88789721|gb|EAR20846.1| DNA repair protein RadC [Nitrococcus mobilis Nb-231]
Length = 224
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G AL+ E+L + L P + +A+ LL F L + A L
Sbjct: 10 ERPREKLLLRGAEALSDAELLAIFLRTGRPGQTAVDLARELLTDFGGLRALLEADLSRFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V +R L + ++ F+ F
Sbjct: 70 ARGGLGPAKFAQLQAVLEMGRRHLGERLQRGDAFASPEDTRRFLQTRLRGYPCEVFSCLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|70733334|ref|YP_263109.1| DNA repair protein RadC [Pseudomonas fluorescens Pf-5]
gi|123652038|sp|Q4K3S4|Y6051_PSEF5 RecName: Full=UPF0758 protein PFL_6051
gi|68347633|gb|AAY95239.1| DNA repair protein RadC [Pseudomonas fluorescens Pf-5]
Length = 224
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 46/122 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L++G +L+ E+L + L + K +A+ LL+RF +L + A
Sbjct: 10 ERPRERLLEQGAISLSDAELLAIFLRTGVAGKSAVDLARHLLRRFGSLRRLLEADQLTFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G L+ V ++R L + L ++ + F F
Sbjct: 70 RQLGLGPAKYALLQAVLEMARRHLAEKLHRQSALENPLVVRDYLKSMLRHEPHEVFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|109896377|ref|YP_659632.1| DNA repair protein RadC [Pseudoalteromonas atlantica T6c]
gi|123361460|sp|Q15ZW0|Y046_PSEA6 RecName: Full=UPF0758 protein Patl_0046
gi|109698658|gb|ABG38578.1| DNA repair protein RadC [Pseudoalteromonas atlantica T6c]
Length = 224
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 45/130 (34%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ H R R++ L +G +AL+ E+L + L I +A+ LL F +L G+
Sbjct: 2 KITQWPAHERPREKLLTQGPDALSDAELLAIFLRTGIKGLSAVDLARNLLNTFGSLRGLI 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A +G+ ++L+ SQR + Q + +
Sbjct: 62 SASQQDFCLAKGLGEAKFVQLQASIELSQRFFAEQLQRETVFNSAQQTKHFLIAQLRDEP 121
Query: 135 ANNFAYCFSI 144
F
Sbjct: 122 NEVFGMLLLD 131
>gi|261418366|ref|YP_003252048.1| DNA repair protein RadC [Geobacillus sp. Y412MC61]
gi|319767675|ref|YP_004133176.1| DNA repair protein RadC [Geobacillus sp. Y412MC52]
gi|261374823|gb|ACX77566.1| DNA repair protein RadC [Geobacillus sp. Y412MC61]
gi|317112541|gb|ADU95033.1| DNA repair protein RadC [Geobacillus sp. Y412MC52]
Length = 226
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 50/121 (41%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R L G +L+ +E++ ++L + +A+ LL+ F L + A + +
Sbjct: 13 RPRERLLSSGPESLSDHELIAILLRTGTKEESVVQLAQRLLRHFEGLRSLKDATVEEMTN 72
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I IG A+++ +RI ++ + + + + V + +F +
Sbjct: 73 IKGIGPTKAVQILAALELGRRIHQSGCADRYVIRCPEDGAKYVMEDMRFLSQEHFVAIYL 132
Query: 144 I 144
Sbjct: 133 N 133
>gi|239832168|ref|ZP_04680497.1| DNA repair protein RadC [Ochrobactrum intermedium LMG 3301]
gi|239824435|gb|EEQ96003.1| DNA repair protein RadC [Ochrobactrum intermedium LMG 3301]
Length = 249
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K Y GH +RL+ RF + +ALA YE+LE++LFR I R DTK +AKALL RF ++
Sbjct: 25 KIEKPHYAGHRDRLKQRFRET-PDALADYELLEMLLFRAIRRADTKPLAKALLTRFGSIA 83
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
V AP L+ E+ G VA ELKLV ++R ++ ++ L +
Sbjct: 84 EVLAAPEKLIAEVPGAGPTVAHELKLVEAVAKRSARSTVMEREVLGSWNQVIEYCTTAMA 143
Query: 132 MKNANNFAYCFSI 144
+ F F
Sbjct: 144 YETREQFRILFLD 156
>gi|160871642|ref|ZP_02061774.1| DNA repair protein RadC [Rickettsiella grylli]
gi|159120441|gb|EDP45779.1| DNA repair protein RadC [Rickettsiella grylli]
Length = 224
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 48/124 (38%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ L +G +AL+ E+L L + + K I++ LL +F +L + A L
Sbjct: 9 RERPREKLLSQGASALSDAELLALFIRTGVRGKTALDISRELLSQFGSLRHIVAASLEQF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +G +E++ + R L+ N + + F+
Sbjct: 69 TKSLGLGLAKYVEIQAAKELATRCLQENLEEHNTFENPRDVHAYLSHKLRCYPYEVFSCL 128
Query: 142 FSIN 145
F N
Sbjct: 129 FLDN 132
>gi|297529218|ref|YP_003670493.1| DNA repair protein RadC [Geobacillus sp. C56-T3]
gi|297252470|gb|ADI25916.1| DNA repair protein RadC [Geobacillus sp. C56-T3]
Length = 226
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 50/121 (41%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R L G +L+ +E++ ++L + +A+ LL+ F L + A + +
Sbjct: 13 RPRERLLSSGPESLSDHELIAILLRTGTKEESVVQLAQRLLRHFEGLRSLKDATVEEMTN 72
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I IG A+++ +RI ++ + + + + V + +F +
Sbjct: 73 IKGIGPTKAVQILAALELGRRIHQSGCADRYVIRCPEDGAKYVMEDMRFLSQEHFVAIYL 132
Query: 144 I 144
Sbjct: 133 N 133
>gi|114762078|ref|ZP_01441546.1| DNA repair protein RadC [Pelagibaca bermudensis HTCC2601]
gi|114545102|gb|EAU48105.1| DNA repair protein RadC [Roseovarius sp. HTCC2601]
Length = 253
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 7 SKAPSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
+ P Y+ H RLR RF + G +AL YE+LEL+LFR IPR+D K +A+ALL
Sbjct: 22 APVPRDAPAPSYLRDHRARLRQRFREGGADALPDYEMLELLLFRAIPRRDVKPLARALLD 81
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
F V AP L + +G+ V ELKLV A+ R+ ++ + ++ L
Sbjct: 82 TFGDFNAVVSAPERRLAAVAGVGESVITELKLVEAAAHRLARSRVLQRPVVSSWDALLSY 141
Query: 126 VERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 142 CQTAMAHRETEQFRILFLD 160
>gi|312113065|ref|YP_004010661.1| DNA repair protein RadC [Rhodomicrobium vannielii ATCC 17100]
gi|311218194|gb|ADP69562.1| DNA repair protein RadC [Rhodomicrobium vannielii ATCC 17100]
Length = 253
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 62/128 (48%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
Y GH +RLR RFL+ G + L YE+LEL+LFR I R+D K +AK LL RF + G V A
Sbjct: 33 HYWGHRDRLRKRFLEGGADPLPDYELLELVLFRAIARRDVKPLAKDLLARFGSFGEVMNA 92
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
P L E+ + + V E ++V A+ R + + L + ++
Sbjct: 93 PRDRLLEVEGVTEAVVTEFRVVQAAALRTAQGEVKKRPIFAAMSTVLDYLRSAMAFEDRE 152
Query: 137 NFAYCFSI 144
F F
Sbjct: 153 QFRILFLD 160
>gi|33151902|ref|NP_873255.1| DNA repair protein RadC [Haemophilus ducreyi 35000HP]
gi|38372438|sp|Q7VN51|Y732_HAEDU RecName: Full=UPF0758 protein HD_0732
gi|33148123|gb|AAP95644.1| DNA repair protein [Haemophilus ducreyi 35000HP]
Length = 223
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G NAL E+L + L I +A +L F +L + A L+ +I
Sbjct: 8 PREKLLTYGANALTDQELLAIFLRTGIKGLPVMQLANQVLTTFGSLRALLTADLNAFCQI 67
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ ++R L + + + ++ + + F F
Sbjct: 68 KGLGQTQFIQLQASKEMTKRYLAQQMQMCETINTPHLAIMYFQTELEFEEREVFMVLFLD 127
Query: 145 N 145
N
Sbjct: 128 N 128
>gi|328543235|ref|YP_004303344.1| DNA repair protein RadC [Polymorphum gilvum SL003B-26A1]
gi|326412981|gb|ADZ70044.1| DNA repair protein RadC [Polymorphum gilvum SL003B-26A1]
Length = 236
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/128 (38%), Positives = 63/128 (49%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
Y GH RLR+RF G + LA YE+LEL+LFR IPRKDTK IAK LL RF + V A
Sbjct: 16 HYHGHRERLRERFRTLGADGLADYELLELLLFRSIPRKDTKPIAKDLLTRFGSFAQVLAA 75
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
P L E+ IG +VA +LKL ++R + + L+ +
Sbjct: 76 PRARLAEVKGIGDQVADDLKLAQACAERFARNQVPQRVELSSWSKLNDYIHAAMAYSERE 135
Query: 137 NFAYCFSI 144
F F
Sbjct: 136 EFRILFLD 143
>gi|310643582|ref|YP_003948340.1| DNA repair protein radc [Paenibacillus polymyxa SC2]
gi|309248532|gb|ADO58099.1| DNA repair protein RadC [Paenibacillus polymyxa SC2]
Length = 230
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 51/126 (40%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+ H R R+R + G +AL+ E+L ++L + + +A+ +L++ L + L
Sbjct: 12 LPHEERPRERMMTYGADALSNAELLAILLRTGTQSESSLHLAQRILQQAGNLRQLVDMSL 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L +I IG A++LK +R+ + ++ + + +F
Sbjct: 72 SELTQIKGIGNAKAIQLKAGIELGRRLALSRHLETPVISCPRDVADLLFEQLRYLQKEHF 131
Query: 139 AYCFSI 144
F
Sbjct: 132 VCLFLN 137
>gi|260774468|ref|ZP_05883382.1| DNA repair protein RadC [Vibrio metschnikovii CIP 69.14]
gi|260610595|gb|EEX35800.1| DNA repair protein RadC [Vibrio metschnikovii CIP 69.14]
Length = 224
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G AL+ E+L + L P + +A LL++ +L +F A
Sbjct: 12 PREKLLARGPQALSDAELLAIFLRTGTPGMNVLELADCLLRQAGSLRALFSASKDQFCTH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT Q + + + F F
Sbjct: 72 KGLGEAKFVQLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLTSVLRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|86136816|ref|ZP_01055394.1| DNA repair protein RadC [Roseobacter sp. MED193]
gi|85826140|gb|EAQ46337.1| DNA repair protein RadC [Roseobacter sp. MED193]
Length = 258
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 1/140 (0%)
Query: 6 MSKAPSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
S A YI H RLR RF + G A+ YE+LEL+LFR +PR+D K +A LL
Sbjct: 26 PSAALRPARLPSYIKDHRLRLRQRFREGGAAAMPDYELLELVLFRSLPRQDVKPLAHQLL 85
Query: 65 KRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
++F V A L +I +G+ + +LK++ A+QR+ +A ++ ++ L
Sbjct: 86 QQFGDFARVVSARPERLAQIKGVGEALITDLKVLEAAAQRMARAKVMQRQVISSWDALLD 145
Query: 125 SVERHYPMKNANNFAYCFSI 144
++ +F F
Sbjct: 146 YCHTVMAHRSLEHFRVLFLD 165
>gi|330812589|ref|YP_004357051.1| putative DNA repair protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380697|gb|AEA72047.1| putative DNA repair protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 224
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 43/122 (35%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L G +L+ E+L + L + K +A+ LL +F +L + A
Sbjct: 10 ERPRERLLALGAGSLSDAELLAIFLRTGVSGKSAVDLARQLLIQFGSLRALLEADQITFS 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ S+R L K L ++ + F F
Sbjct: 70 NHMGLGPAKFAQLQAAQEMSRRHLAEQAREKTSLESPFAVREYLKSMLRHEPHEVFGCLF 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|292493862|ref|YP_003529301.1| DNA repair protein RadC [Nitrosococcus halophilus Nc4]
gi|291582457|gb|ADE16914.1| DNA repair protein RadC [Nitrosococcus halophilus Nc4]
Length = 224
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 50/128 (39%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ H R R++ LQ+G AL+ E+L + L + K +A+ LL+ F +L + A
Sbjct: 5 HWPAHERPREKLLQRGPGALSDAELLAIFLRTGVTGKTAVDLARELLEDFGSLRALLEAD 64
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L+ +G +L+ +R L+A LT +
Sbjct: 65 LNQFCRAPGLGLAKYAQLQACLEMGRRHLEATLKRGDALTDPITTQRYLVARLRAYPFEV 124
Query: 138 FAYCFSIN 145
F+ F N
Sbjct: 125 FSCLFLDN 132
>gi|253991844|ref|YP_003043200.1| DNA repair protein RadC [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253783294|emb|CAQ86459.1| dna repair protein radc [Photorhabdus asymbiotica]
Length = 230
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L E+L + L +A+ LLK F +L + A
Sbjct: 18 PREKLLAYGSVSLTDAELLAIFLRTGTRGVPVLRMAEFLLKEFGSLYHLLSADYDTFCSH 77
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ ++ ++R + + + ++ ++ ++ F F
Sbjct: 78 KGMGLAKYAQLQAIAELAKRFFSSQFIHEDIMSSPSVTREYLQNLLSGRDREIFVVLFLN 137
Query: 145 N 145
N
Sbjct: 138 N 138
>gi|192360376|ref|YP_001983975.1| DNA repair protein RadC [Cellvibrio japonicus Ueda107]
gi|238692434|sp|B3PG68|Y3522_CELJU RecName: Full=UPF0758 protein CJA_3522
gi|190686541|gb|ACE84219.1| DNA repair protein RadC [Cellvibrio japonicus Ueda107]
Length = 224
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 47/123 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L G AL+ E+L + L K +A+ LL++F L + A
Sbjct: 10 ERPREKLLSMGAPALSDAELLAIFLRIGCVGKSAVDVARELLQQFGGLRPLLEASQKEFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G ++L+ V ++R + A+ + L+ + FA F
Sbjct: 70 RGRGLGMVKYVQLQAVLEMARRHIHADMKVGDLLSSPHLVRDYLRAQLRHHAREVFAVLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|260912778|ref|ZP_05919264.1| DNA repair protein RadC [Pasteurella dagmatis ATCC 43325]
gi|260633156|gb|EEX51321.1| DNA repair protein RadC [Pasteurella dagmatis ATCC 43325]
Length = 214
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 44/121 (36%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G N L E+L + L I ++ +L F +L G+ A ++
Sbjct: 2 PREKLLTFGANTLTDSELLAIFLRTGIKDCPVMQLSTKVLDHFGSLRGLLSANQQSFCQV 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG ++L+ ++R L+ + + ++ K F F
Sbjct: 62 KGIGITQFIQLQACIEMTKRYLQEELHQMQVFDNPNSVRLYLQASLQHKEREVFLVLFLD 121
Query: 145 N 145
N
Sbjct: 122 N 122
>gi|291613221|ref|YP_003523378.1| DNA repair protein RadC [Sideroxydans lithotrophicus ES-1]
gi|291583333|gb|ADE10991.1| DNA repair protein RadC [Sideroxydans lithotrophicus ES-1]
Length = 224
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 52/122 (42%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ LQ+G AL+ E+L + L + +A+ LL RF +L +F A
Sbjct: 10 ERPREKLLQRGAAALSDAELLAIFLRTGVVGMSAVDLARDLLVRFGSLTRMFAASEKDFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I+ +G+ ++L+ V S+R L+ L + ++ + F F
Sbjct: 70 DIHGMGRAKFVQLQAVVEMSRRALREEMQSGDVLNSPRAVREYLQLLLRSRQQEVFVAIF 129
Query: 143 SI 144
Sbjct: 130 VD 131
>gi|217969675|ref|YP_002354909.1| DNA repair protein RadC [Thauera sp. MZ1T]
gi|217507002|gb|ACK54013.1| DNA repair protein RadC [Thauera sp. MZ1T]
Length = 225
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ L +G AL+ E+L + L I + +A+ALL RF TL + GA +
Sbjct: 9 DERPREKLLARGAAALSDAELLAIFLRVGIRGQSAVDLARALLSRFGTLTRMCGADANEF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +G +L+ V S+R L + Q + F
Sbjct: 69 AAVPGMGLAKYAQLQAVMELSRRALAETLVARPLFDSPQVVRDWLRLRLGHLPHETFCVL 128
Query: 142 FSI 144
Sbjct: 129 LLD 131
>gi|220933291|ref|YP_002512190.1| DNA repair protein RadC [Thioalkalivibrio sp. HL-EbGR7]
gi|254789667|sp|B8GTE3|Y100_THISH RecName: Full=UPF0758 protein Tgr7_0100
gi|219994601|gb|ACL71203.1| DNA repair protein RadC [Thioalkalivibrio sp. HL-EbGR7]
Length = 223
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 46/124 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ L +G AL+ E+L + L + K +A+ LL RF L + A L
Sbjct: 9 DERPREKLLSRGAAALSDAELLAIFLRTGVAGKTAVDLARELLSRFGGLRPLLQADLVSF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G +L+ V +R L + + LT + FA
Sbjct: 69 SSARGLGSAKYAQLQAVLEMGRRHLSESLARGDALTSPDDTRRFLAARLRDYPFEVFACL 128
Query: 142 FSIN 145
F N
Sbjct: 129 FLDN 132
>gi|332171766|gb|AEE21020.1| DNA repair protein RadC [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 224
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 45/130 (34%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ H R R++ L +G NAL+ E+L + L I +A+ LL F +L G+
Sbjct: 2 KITQWPAHERPREKLLTQGPNALSDAELLAIFLRTGIKGLSAVDLARNLLNTFGSLRGLI 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A +G+ ++L+ SQR + Q + +
Sbjct: 62 SASQQDFCLAKGLGEAKFVQLQASIELSQRFFAEQLQRETVFNSAQQTKHFLISQLRDEP 121
Query: 135 ANNFAYCFSI 144
F
Sbjct: 122 NEVFGMLLLD 131
>gi|90415484|ref|ZP_01223418.1| DNA repair protein RadC [marine gamma proteobacterium HTCC2207]
gi|90332807|gb|EAS47977.1| DNA repair protein RadC [marine gamma proteobacterium HTCC2207]
Length = 217
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 46/122 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ + +G +AL+ E+L + L +P +A+ L+K F LG + +
Sbjct: 3 ERPREKLILRGASALSDAELLAIFLRTGLPGITAIDLARDLIKEFGGLGALISSDHTTFC 62
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G ++LK ++R L+ + T + + F
Sbjct: 63 KAKGVGTAKFVQLKASVELTRRYLQEQLEGQPVFTSPEKVGDYLSVQMRDYKREVFVMLL 122
Query: 143 SI 144
Sbjct: 123 LD 124
>gi|209549111|ref|YP_002281028.1| DNA repair protein RadC [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|226736629|sp|B5ZMI0|Y1511_RHILW RecName: Full=UPF0758 protein Rleg2_1511
gi|209534867|gb|ACI54802.1| DNA repair protein RadC [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 275
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/133 (46%), Positives = 83/133 (62%), Gaps = 2/133 (1%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
Y GH RLRDRF ++G+ ALA YEILEL+LFRLIPR+DTK IAKAL++RF +L GVFGA
Sbjct: 55 HYHGHRERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIAKALIERFGSLAGVFGA 114
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
P LL E+ +G+ VAL+LKL+S + R LK+ K+ L+ + +
Sbjct: 115 PAALLTEVKGVGEAVALDLKLISTVAHRTLKSELRSKQVLSSWSSVIQYCHAAMAHETRE 174
Query: 137 NFAYCFSI--NII 147
F F N++
Sbjct: 175 QFRILFLDKRNVL 187
>gi|90580921|ref|ZP_01236723.1| DNA repair protein RadC [Vibrio angustum S14]
gi|90437992|gb|EAS63181.1| DNA repair protein RadC [Vibrio angustum S14]
Length = 224
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 47/122 (38%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ L G +AL E+L + L + +A LL F +L + GA + +
Sbjct: 11 RPREKLLSHGSDALTDAELLAIFLRTGTQGMNALELATYLLDEFGSLRALLGAEKQIFCQ 70
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+G +L+ V ++R L+ LT Q + R K F F
Sbjct: 71 FKGLGPAKFAQLQAVLALNERYLEETLKKDDVLTSPQNTRRYLARKLRDKQREAFYILFL 130
Query: 144 IN 145
N
Sbjct: 131 DN 132
>gi|261867145|ref|YP_003255067.1| DNA repair protein RadC [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|261412477|gb|ACX81848.1| DNA repair protein RadC [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 219
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G AL E+L + L I ++K +L+ F +L + A +
Sbjct: 7 PREKLLKYGAAALTDDELLAIFLRTGIKDCPVMQLSKNVLQHFGSLRELIRADQKQFCAV 66
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG ++L+ + ++R L A T + ++ F F
Sbjct: 67 KGIGVTQFIQLQACTEMTRRYLFAELKETHCFTSTDIVKMYLQTELANIEREIFMVLFLD 126
Query: 145 N 145
N
Sbjct: 127 N 127
>gi|153009239|ref|YP_001370454.1| DNA repair protein RadC [Ochrobactrum anthropi ATCC 49188]
gi|229470322|sp|A6X071|Y1909_OCHA4 RecName: Full=UPF0758 protein Oant_1909
gi|151561127|gb|ABS14625.1| DNA repair protein RadC [Ochrobactrum anthropi ATCC 49188]
Length = 249
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K Y GH +RL+ RF +ALA YE+LE++LFR I R DTK +AKALL RF ++
Sbjct: 25 KIDKPHYAGHRDRLKQRFRDT-PDALADYELLEMLLFRAIRRADTKPLAKALLMRFGSIA 83
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
V AP L+ E+ G VA ELKLV ++R ++ ++ L +
Sbjct: 84 EVLAAPEKLIAEVPGAGPTVAHELKLVEAVAKRSARSTVMEREVLGSWNKVIEYCTAAMA 143
Query: 132 MKNANNFAYCFSI 144
+ F F
Sbjct: 144 YETREQFRILFLD 156
>gi|312963850|ref|ZP_07778321.1| hypothetical protein PFWH6_5769 [Pseudomonas fluorescens WH6]
gi|311281885|gb|EFQ60495.1| hypothetical protein PFWH6_5769 [Pseudomonas fluorescens WH6]
Length = 224
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LL +F L + A +
Sbjct: 10 ERPRERLLEWGAASLSDAELLAIFLRTGVCGKSAVDLARHLLTQFGGLRPLLEASQAVFN 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G +L+ V S+R + L ++ + F F
Sbjct: 70 QQLGLGPAKFAQLQAVLEMSRRHMAERLRSDSVLESPLAVREYLKALLRHEPNEIFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|293376482|ref|ZP_06622711.1| DNA repair protein RadC [Turicibacter sanguinis PC909]
gi|325842026|ref|ZP_08167563.1| DNA repair protein RadC [Turicibacter sp. HGF1]
gi|292644904|gb|EFF62985.1| DNA repair protein RadC [Turicibacter sanguinis PC909]
gi|325489748|gb|EGC92104.1| DNA repair protein RadC [Turicibacter sp. HGF1]
Length = 223
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 48/123 (39%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R+R L +G L+ E+L ++L + +A+ +LK+ L + + L
Sbjct: 8 DERPRERLLTEGAEFLSNAELLAILLRTGTKNQSALQMAQLILKQTQGLKFLNEMTIEEL 67
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +GK A++L +RI KA + + C+ + +F
Sbjct: 68 MNVKGVGKSKAIQLLASIELGKRISKAKYQKVDAILSPSDCVDYLAVEMKHLTQEHFVVL 127
Query: 142 FSI 144
F
Sbjct: 128 FLD 130
>gi|59710733|ref|YP_203509.1| DNA repair protein RadC [Vibrio fischeri ES114]
gi|71648820|sp|Q5E8M5|Y126_VIBF1 RecName: Full=UPF0758 protein VF_0126
gi|59478834|gb|AAW84621.1| protein associated with replication fork, possible DNA repair
protein [Vibrio fischeri ES114]
Length = 224
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 46/122 (37%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ L G +L E+L + L + +A LLK F +L + + +
Sbjct: 11 RPREKLLALGPKSLTDAELLAIFLRTGTQGMNAIELADKLLKEFGSLRKLLSSDENEFCS 70
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+G +L+ V ++R L + LT + + R ++ F F
Sbjct: 71 HKGLGTAKFAQLQAVVEMTERYLFEKIEKEDALTSPEHTKRYLTRMLRDRHREAFYVLFL 130
Query: 144 IN 145
N
Sbjct: 131 DN 132
>gi|163803269|ref|ZP_02197148.1| DNA repair protein RadC [Vibrio sp. AND4]
gi|159172906|gb|EDP57744.1| DNA repair protein RadC [Vibrio sp. AND4]
Length = 224
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 50/121 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G AL+ E+L + L + ++ L++ F +L +F A + +
Sbjct: 12 PREKLLQRGPQALSDAELLAIFLRTGTQGMNVIELSDFLIQDFGSLRQLFSASENEFCQH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT + + + + F F
Sbjct: 72 KGLGQAKYVQLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSVLRDRQREVFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|269468964|gb|EEZ80545.1| DNA repair protein RadC [uncultured SUP05 cluster bacterium]
Length = 226
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ L+ GE +L+ E+L + L + K +A+ LL +F ++ + A
Sbjct: 10 DRPREKLLKFGEASLSDAELLAIFLRTGVKGKSAVELAQDLLDQFGSIHNLLNASEAEFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G+ + L+ V ++R ++ S T + + N F
Sbjct: 70 QGKGLGQAKYVHLRGVLEMAKRHFESGLSKGDAFTKPDQIAQYLHLNIGNLNRETFVVLL 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|37528674|ref|NP_932019.1| DNA repair protein RadC [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|54036232|sp|Q7MY28|Y4865_PHOLL RecName: Full=UPF0758 protein plu4865
gi|36788113|emb|CAE17237.1| DNA repair protein [Photorhabdus luminescens subsp. laumondii TTO1]
Length = 230
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L E+L + L +A+ LLK F +L + A
Sbjct: 18 PREKLLAYGSVSLTDAELLAIFLRTGTRGLPVLRMAEFLLKEFGSLYHLLSADYDTFCSH 77
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ ++ ++R + + + ++ ++ ++ F F
Sbjct: 78 KGMGLAKYAQLQAIAELAKRFFSSQFMHEDIMSSPSVTQEYLQNLLSGRDREIFVVLFLN 137
Query: 145 N 145
N
Sbjct: 138 N 138
>gi|311031478|ref|ZP_07709568.1| DNA repair protein RadC [Bacillus sp. m3-13]
Length = 232
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 52/139 (37%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M + + R R+R +Q G +L+ +E+L ++L + +A LL
Sbjct: 1 MESTKTTALMIKDYPEDQRPRERMIQDGPKSLSNHELLAILLRTGSKEESVLQLANKLLV 60
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
F L + A + + + IGK A++L +RI + + + + +
Sbjct: 61 NFEGLRLLKDASIEEITDTKGIGKVKAVQLMAAVELGRRIHRLQYEDRYVIRSPEDAANF 120
Query: 126 VERHYPMKNANNFAYCFSI 144
V + +F +
Sbjct: 121 VMEDMRFLSQEHFVCLYLN 139
>gi|220927247|ref|YP_002502549.1| DNA repair protein RadC [Methylobacterium nodulans ORS 2060]
gi|219951854|gb|ACL62246.1| DNA repair protein RadC [Methylobacterium nodulans ORS 2060]
Length = 242
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
D + A + Y GH RLR RF Q + L YE LEL+LFR IPR+D K IAK
Sbjct: 9 PDRTGALAEAAGETPHYHGHRERLRARFAQG--DTLPDYEFLELVLFRSIPRRDVKPIAK 66
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
AL++RF + V AP LL E + IG V +LK++ A +R+ + + + L+
Sbjct: 67 ALIQRFGSFAEVITAPAELLMETDGIGPAVVADLKILEAAGRRLARGAVAERPLLSSWSA 126
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 127 VIDYCRAAMAFAPREEFRILFLD 149
>gi|299535631|ref|ZP_07048952.1| DNA repair protein radC-like protein [Lysinibacillus fusiformis
ZC1]
gi|298728831|gb|EFI69385.1| DNA repair protein radC-like protein [Lysinibacillus fusiformis
ZC1]
Length = 224
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 50/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R+R L++G +L+ E+L ++L + +A +L F L + A + +
Sbjct: 10 DRPRERLLRQGAESLSNQELLAILLRTGTKEESVLVLANRVLNVFERLHHLKHATIEEMM 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I IG+ A++L +R+ + + K + Q + N +F F
Sbjct: 70 AIKGIGEVKAIQLMAAIELGRRLAQKHNDEKFTIRSPQDAATYLMPDMTSLNQEHFVVLF 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|255019864|ref|ZP_05291939.1| DNA repair protein RadC [Acidithiobacillus caldus ATCC 51756]
gi|254970644|gb|EET28131.1| DNA repair protein RadC [Acidithiobacillus caldus ATCC 51756]
Length = 224
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 50/123 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+KG +L+ E+L + L + + +A+ LL+RF L G+ A
Sbjct: 10 ERPRERLLEKGAASLSDAELLAIFLRVGVQGQSAVEMARGLLQRFGGLRGLLTASAAEFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ V +R + NW + L + + ++ F F
Sbjct: 70 AERGLGMAKYAQLQAVLEMGRRHMAENWHRGEALDSPRRVAEYLRLILRDRSREVFLVLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|145632338|ref|ZP_01788073.1| DNA repair protein RadC [Haemophilus influenzae 3655]
gi|145634128|ref|ZP_01789839.1| DNA repair protein RadC [Haemophilus influenzae PittAA]
gi|145637257|ref|ZP_01792918.1| DNA repair protein RadC [Haemophilus influenzae PittHH]
gi|229843987|ref|ZP_04464128.1| DNA repair protein RadC [Haemophilus influenzae 6P18H1]
gi|144987245|gb|EDJ93775.1| DNA repair protein RadC [Haemophilus influenzae 3655]
gi|145268572|gb|EDK08565.1| DNA repair protein RadC [Haemophilus influenzae PittAA]
gi|145269509|gb|EDK09451.1| DNA repair protein RadC [Haemophilus influenzae PittHH]
gi|229812981|gb|EEP48669.1| DNA repair protein RadC [Haemophilus influenzae 6P18H1]
Length = 214
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + A +
Sbjct: 2 PREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSV 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + + F F
Sbjct: 62 KGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLD 121
Query: 145 N 145
N
Sbjct: 122 N 122
>gi|114704379|ref|ZP_01437287.1| DNA repair protein RadC [Fulvimarina pelagi HTCC2506]
gi|114539164|gb|EAU42284.1| DNA repair protein RadC [Fulvimarina pelagi HTCC2506]
Length = 252
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 73/143 (51%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
E Y GH RL+ RF ++G ++LA YE+LEL+LFR IPRKD K IAK
Sbjct: 17 EHPERKARTEASGTKHYDGHRERLKGRFAEQGPDSLADYELLELVLFRSIPRKDVKPIAK 76
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
ALL RF +LG V AP LL EI + VAL+L +V+ +QR +++ ++ L+
Sbjct: 77 ALLARFGSLGEVLNAPRRLLTEIEGVKDAVALDLSIVAAVNQRAMRSAVKKREVLSSWSA 136
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 137 VIDYCTAAMAHEPREQFRILFLD 159
>gi|315645752|ref|ZP_07898876.1| DNA repair protein RadC [Paenibacillus vortex V453]
gi|315279230|gb|EFU42540.1| DNA repair protein RadC [Paenibacillus vortex V453]
Length = 229
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 49/126 (38%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
I H R R+R +Q G +AL++ E+L ++L ++ IA+ LL + + +
Sbjct: 11 IPHDERPRERMMQYGASALSHAELLAILLRTGTRQESAVHIAQRLLGEAGGIRQLVDLSI 70
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+ +I IG A++LK +R+ + + + +F
Sbjct: 71 EEITQIKGIGTAKAVQLKAGIELGRRLAASRHVEPVIIRSPHDAAELLSEQMRYLQKEHF 130
Query: 139 AYCFSI 144
F
Sbjct: 131 VCVFLN 136
>gi|255319392|ref|ZP_05360608.1| DNA repair protein RadC [Acinetobacter radioresistens SK82]
gi|262380856|ref|ZP_06074007.1| DNA repair protein radC [Acinetobacter radioresistens SH164]
gi|255303528|gb|EET82729.1| DNA repair protein RadC [Acinetobacter radioresistens SK82]
gi|262297491|gb|EEY85409.1| DNA repair protein radC [Acinetobacter radioresistens SH164]
Length = 241
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 1/130 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ R R+R LQ+G +L+ E+L + L + +A+ +++ F L VF A
Sbjct: 6 KHWPEQERPRERLLQQGAQSLSDAELLAIFLRSGSRQHSAVELARQMIQHFGGLSPVFDA 65
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNA 135
L L + + +G +L V +R L+ + + L L + +
Sbjct: 66 ELSDLSQFHGMGPSKYSQLMAVKELGRRYLQQYFHQPQLELNSSAQVLDYLRYELLGERQ 125
Query: 136 NNFAYCFSIN 145
FA N
Sbjct: 126 EVFAVLCLDN 135
>gi|89098968|ref|ZP_01171848.1| DNA repair protein RadC [Bacillus sp. NRRL B-14911]
gi|89086372|gb|EAR65493.1| DNA repair protein RadC [Bacillus sp. NRRL B-14911]
Length = 223
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R+RF+Q G +L+ +E+L L+L + ++ LL F L + A L +
Sbjct: 8 DERPRERFIQNGPESLSNHELLALMLRTGTKEESVLQLSNRLLTHFEGLRLLKDATLDEM 67
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG A+++ +RI ++ + + + V + +F
Sbjct: 68 TSIKGIGMAKAIQVLAAVEIGRRISSLSYDDRFVIRSPEDGAKYVMNDMRFLSQEHFVCL 127
Query: 142 FSI 144
+
Sbjct: 128 YLN 130
>gi|261405382|ref|YP_003241623.1| DNA repair protein RadC [Paenibacillus sp. Y412MC10]
gi|329928472|ref|ZP_08282340.1| DNA repair protein RadC [Paenibacillus sp. HGF5]
gi|261281845|gb|ACX63816.1| DNA repair protein RadC [Paenibacillus sp. Y412MC10]
gi|328937731|gb|EGG34139.1| DNA repair protein RadC [Paenibacillus sp. HGF5]
Length = 229
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 49/126 (38%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
I H R R+R +Q G +AL++ E+L ++L ++ IA+ LL + + +
Sbjct: 11 IPHDERPRERMMQYGASALSHAELLAILLRTGTRQESAVHIAQRLLGEAGGIRQLVDLSI 70
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+ +I IG A++LK +R+ + + + +F
Sbjct: 71 EEITQIKGIGTAKAVQLKAGIELGRRLAASRHVEPVIIRSPHDAAELLSEQMRYLQKEHF 130
Query: 139 AYCFSI 144
F
Sbjct: 131 VCVFLN 136
>gi|145638225|ref|ZP_01793835.1| DNA repair protein RadC [Haemophilus influenzae PittII]
gi|145272554|gb|EDK12461.1| DNA repair protein RadC [Haemophilus influenzae PittII]
Length = 214
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + A +
Sbjct: 2 PREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSV 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + + F F
Sbjct: 62 KGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLD 121
Query: 145 N 145
N
Sbjct: 122 N 122
>gi|259417142|ref|ZP_05741061.1| DNA repair protein RadC [Silicibacter sp. TrichCH4B]
gi|259346048|gb|EEW57862.1| DNA repair protein RadC [Silicibacter sp. TrichCH4B]
Length = 271
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 1 LEDFRMSKAPSKDSHLDYIG--------HHNRLRDRFLQKGENALAYYEILELILFRLIP 52
L F S AP + G H +RLR RF+ G A+ YE+LELILFR IP
Sbjct: 27 LPLFEGSDAPPATTVPQGQGRLPSYIKDHRSRLRTRFMAGGAAAIPDYELLELILFRSIP 86
Query: 53 RKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSI 112
R+D K +A+ LL F L V A L ++ IG+ V +LK++ A+QR+ +A
Sbjct: 87 RQDVKPLARLLLDHFGDLNRVITASPERLGDVQGIGQAVICDLKILEAAAQRMARARVMQ 146
Query: 113 KKFLTPGQPCLISVERHYPMKNANNFAYCFSI--NII 147
++ + L + F + N++
Sbjct: 147 RQVIASWDALLDYCHTAMAHRETEQFRVLYLDRKNVL 183
>gi|86357475|ref|YP_469367.1| DNA repair protein RadC [Rhizobium etli CFN 42]
gi|123512146|sp|Q2K946|Y1848_RHIEC RecName: Full=UPF0758 protein RHE_CH01848
gi|86281577|gb|ABC90640.1| DNA repair protein [Rhizobium etli CFN 42]
Length = 274
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
Query: 3 DFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
+ R + S + Y GH RLRDRF + G+ ALA YEILEL+LFRLIPR+DTK IAKA
Sbjct: 40 NLRPALTASLAAPEHYHGHRERLRDRFRELGDTALADYEILELLLFRLIPRRDTKPIAKA 99
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
L++RF +L GVFGAP LL E+ +G+ VAL+LKL++ + R LK+ K+ L+
Sbjct: 100 LIERFGSLAGVFGAPAALLTEVKGVGENVALDLKLIATVAHRTLKSEIRSKQVLSSWSSV 159
Query: 123 LISVERHYPMKNANNFAYCFSI--NII 147
+ + F F N++
Sbjct: 160 IQYCHAAMAHETREQFRILFLDKRNVL 186
>gi|57233728|ref|YP_182165.1| RadC family DNA repair protein [Dehalococcoides ethenogenes 195]
gi|57224176|gb|AAW39233.1| DNA repair protein, RadC family [Dehalococcoides ethenogenes 195]
Length = 271
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 59/143 (41%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+ PS + GH RLR+RFL+ G + L YE+++L+L PR+D K AK
Sbjct: 3 PPKKTEDTPSVSTANPNAGHRQRLRERFLKAGLDGLNDYEVVDLLLTLGTPRRDCKQAAK 62
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
+K F +L V A L I IG+ ++ L L+ S+R LK K Q
Sbjct: 63 EAIKHFGSLRAVLEASPAELSSIKGIGEVNSMALTLIREVSRRYLKDGIMEKPVCNTAQQ 122
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ F +
Sbjct: 123 VFDYLYCAMRGLKKEVFKVIYLD 145
>gi|145640620|ref|ZP_01796203.1| DNA repair protein RadC [Haemophilus influenzae R3021]
gi|145274546|gb|EDK14409.1| DNA repair protein RadC [Haemophilus influenzae 22.4-21]
Length = 221
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + A +
Sbjct: 9 PREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + F F
Sbjct: 69 KGLGITQFIQLQAITEMTKRYLKQEMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|319775112|ref|YP_004137600.1| DNA repair protein RadC-like protein [Haemophilus influenzae F3047]
gi|309973545|gb|ADO96746.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
gi|317449703|emb|CBY85910.1| DNA repair protein RadC homolog [Haemophilus influenzae F3047]
Length = 221
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + A +
Sbjct: 9 PREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + + F F
Sbjct: 69 KGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|260580042|ref|ZP_05847872.1| DNA repair protein [Haemophilus influenzae RdAW]
gi|329122974|ref|ZP_08251545.1| DNA repair protein RadC [Haemophilus aegyptius ATCC 11116]
gi|260093326|gb|EEW77259.1| DNA repair protein [Haemophilus influenzae RdAW]
gi|327471905|gb|EGF17345.1| DNA repair protein RadC [Haemophilus aegyptius ATCC 11116]
Length = 234
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + A +
Sbjct: 22 PREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSV 81
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + + F F
Sbjct: 82 KGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLD 141
Query: 145 N 145
N
Sbjct: 142 N 142
>gi|218530437|ref|YP_002421253.1| DNA repair protein RadC [Methylobacterium chloromethanicum CM4]
gi|218522740|gb|ACK83325.1| DNA repair protein RadC [Methylobacterium chloromethanicum CM4]
Length = 248
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 48/132 (36%), Positives = 64/132 (48%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
D Y GH RLR RF Q G ALA YE+LEL LFR IPR+D K +AKAL+ RF +
Sbjct: 24 DETPHYHGHRERLRARFAQAGAEALADYELLELTLFRSIPRRDVKPLAKALIHRFGSFAE 83
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
V A L E+ + VA +LKLV A +R+ + + + L+ + +
Sbjct: 84 VVSAEPARLMEVEGVSAGVAADLKLVEAAGRRLARGAIAARPLLSSWSALIEYLRATMAF 143
Query: 133 KNANNFAYCFSI 144
F F
Sbjct: 144 SGREEFRVLFLD 155
>gi|188581415|ref|YP_001924860.1| DNA repair protein RadC [Methylobacterium populi BJ001]
gi|179344913|gb|ACB80325.1| DNA repair protein RadC [Methylobacterium populi BJ001]
Length = 246
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Query: 4 FRMSKAPSKDSH-LDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
+++AP+ Y GH RLR RF + G +ALA YE+LEL LFR IPR+D K +AKA
Sbjct: 12 PGLAEAPAAADETPHYHGHRERLRTRFAEAGADALADYELLELALFRSIPRRDVKPLAKA 71
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
L++RF + V A L E+ + VA +LKL+ A +R+ + + + L+
Sbjct: 72 LIRRFGSFAEVVSAEPARLAEVEGVSAGVAADLKLIEAAGRRLARGAIAARPLLSSWSAL 131
Query: 123 LISVERHYPMKNANNFAYCFSI 144
L + F F
Sbjct: 132 LEYLRATMAFSGREEFRVLFLD 153
>gi|301169677|emb|CBW29278.1| protein associated with replication fork, possible DNA repair
protein [Haemophilus influenzae 10810]
Length = 234
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + A +
Sbjct: 22 PREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSV 81
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + + F F
Sbjct: 82 KGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLD 141
Query: 145 N 145
N
Sbjct: 142 N 142
>gi|260576196|ref|ZP_05844189.1| DNA repair protein RadC [Rhodobacter sp. SW2]
gi|259021676|gb|EEW24979.1| DNA repair protein RadC [Rhodobacter sp. SW2]
Length = 256
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 12 KDSHLDYIG-HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
YI H RLR RF++ G A+ YE+LEL+LFR IPR+D K +A+ALL F
Sbjct: 30 PARLPSYIADHRKRLRSRFIEGGATAMPDYELLELLLFRAIPRQDVKPLARALLDTFGDF 89
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
V AP+ L +N +G+ V ELK+V A+QR+++A + L+ L
Sbjct: 90 NRVISAPMARLLAVNGVGQAVVQELKIVEAAAQRLMRARVLHRPVLSSWDALLDYCRTAM 149
Query: 131 PMKNANNFAYCFSI--NII 147
+ F F N++
Sbjct: 150 AHLDLEQFRILFLDRKNVL 168
>gi|198282668|ref|YP_002218989.1| DNA repair protein RadC [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667466|ref|YP_002424861.1| DNA repair protein RadC [Acidithiobacillus ferrooxidans ATCC 23270]
gi|226736615|sp|B7J4A8|Y358_ACIF2 RecName: Full=UPF0758 protein AFE_0358
gi|238689967|sp|B5EMA3|Y528_ACIF5 RecName: Full=UPF0758 protein Lferr_0528
gi|198247189|gb|ACH82782.1| DNA repair protein RadC [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519679|gb|ACK80265.1| DNA repair protein RadC [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 224
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 44/124 (35%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R+R LQKG L+ E+L + L + K +A+ +L F +L + A H
Sbjct: 9 DERPRERLLQKGAATLSDAELLAIFLRVGVVGKSAVDLAREMLLNFGSLRALLTASHHDF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G L+ V +R L W L + + FA
Sbjct: 69 CVHKGLGDAKYALLQAVLEMGRRHLAEEWQRGDGLDSPLRVRQYLSATLRDRCREVFAVI 128
Query: 142 FSIN 145
F N
Sbjct: 129 FLDN 132
>gi|309751380|gb|ADO81364.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
Length = 221
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + A +
Sbjct: 9 PREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + + F F
Sbjct: 69 KGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|251798399|ref|YP_003013130.1| DNA repair protein RadC [Paenibacillus sp. JDR-2]
gi|247546025|gb|ACT03044.1| DNA repair protein RadC [Paenibacillus sp. JDR-2]
Length = 228
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 51/126 (40%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+ H R R+R +Q G AL++ E+L ++L ++ +A +LK +L + +
Sbjct: 10 VPHEERPRERMMQYGAEALSHTELLAILLRTGTKQESAVHLAGKILKECGSLRNLLDMSM 69
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L I IG A++L+ +RI+++ + Q V +F
Sbjct: 70 SELTAIKGIGPVKAVQLRAGIELGRRIVRSGQGELVTVRKPQDAANYVMEEMRYLKKEHF 129
Query: 139 AYCFSI 144
F
Sbjct: 130 VCLFLN 135
>gi|148826397|ref|YP_001291150.1| DNA repair protein RadC [Haemophilus influenzae PittEE]
gi|148716557|gb|ABQ98767.1| DNA repair protein RadC [Haemophilus influenzae PittEE]
Length = 214
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + + +
Sbjct: 2 PREKLLASGAKALSDYELLAIFLRTGIKGCPVISLSKNVLTHFGSLHALLSSDKKAFCSV 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + F F
Sbjct: 62 KGLGITQFIQLQAITEMTKRYLKQEMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLD 121
Query: 145 N 145
N
Sbjct: 122 N 122
>gi|170744786|ref|YP_001773441.1| DNA repair protein RadC [Methylobacterium sp. 4-46]
gi|168199060|gb|ACA21007.1| DNA repair protein RadC [Methylobacterium sp. 4-46]
Length = 247
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
+++AP Y GH RLR RF Q + L YE LEL+LFR IPR+D K IAKAL+
Sbjct: 20 LAEAPG--EAPHYHGHRERLRARFAQG--DTLPDYEFLELVLFRSIPRRDVKPIAKALIA 75
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF + V AP L EI+ IG V +LK++ A +R+ + + + L+ L
Sbjct: 76 RFGSFAEVITAPAERLAEIDGIGPAVVADLKILEAAGRRLARGAVADRPLLSSWSAVLDY 135
Query: 126 VERHYPMKNANNFAYCFSI 144
F F
Sbjct: 136 CRAAMAFAPREEFRILFLD 154
>gi|254503230|ref|ZP_05115381.1| DNA repair protein RadC [Labrenzia alexandrii DFL-11]
gi|222439301|gb|EEE45980.1| DNA repair protein RadC [Labrenzia alexandrii DFL-11]
Length = 237
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
D S+ PS D+ GH RLR+RF + GEN+LA YE+LE +LF +PR+DTK IAK
Sbjct: 4 PDAGFSEKPSADTGTK--GHRQRLRERFRKTGENSLADYELLEFLLFSALPRQDTKPIAK 61
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
ALLKRF + AP L+EI + L + A R A ++ L
Sbjct: 62 ALLKRFGSFSAALSAPRPRLKEIKGLSDNSIDTLHAIHAAIARFHTAELRERELLDSWSK 121
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ ++ M F F
Sbjct: 122 VMDYLQARMAMSEVEQFRVLFLD 144
>gi|197334055|ref|YP_002154894.1| DNA repair protein RadC [Vibrio fischeri MJ11]
gi|238690291|sp|B5FFF6|Y123_VIBFM RecName: Full=UPF0758 protein VFMJ11_0123
gi|197315545|gb|ACH64992.1| DNA repair protein RadC [Vibrio fischeri MJ11]
Length = 224
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 47/122 (38%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ L G +L E+L + L I + +A LLK F +L + + +
Sbjct: 11 RPREKLLALGPKSLTDAELLAIFLRTGIQGMNAIELADKLLKEFGSLRKLLSSDENEFCS 70
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+G +L+ V ++R L + LT + + R ++ F F
Sbjct: 71 HKGLGAAKFAQLQAVVEMTERYLFEKIEKEDALTSPEHTKRYLTRMLRDRHREAFYVLFL 130
Query: 144 IN 145
N
Sbjct: 131 DN 132
>gi|254490370|ref|ZP_05103559.1| DNA repair protein RadC [Methylophaga thiooxidans DMS010]
gi|224464503|gb|EEF80763.1| DNA repair protein RadC [Methylophaga thiooxydans DMS010]
Length = 224
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 51/129 (39%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+R R++ L+ G AL+ E+L + L + +A+ LL F +L + A
Sbjct: 4 KDWPADDRPREKLLRAGAKALSDAELLAIFLRTGVKGLSAVDLARQLLSEFGSLRRLLEA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ +G+ ++L+ V S+R L++ + L +++
Sbjct: 64 DEPSFCNGHGLGQAKFVQLQAVLEMSRRHLESTMIRGEALKDCDLTKNYLKQRLRAYPHE 123
Query: 137 NFAYCFSIN 145
FA F N
Sbjct: 124 VFACLFLDN 132
>gi|37678469|ref|NP_933078.1| DNA repair protein RadC [Vibrio vulnificus YJ016]
gi|320157667|ref|YP_004190046.1| DNA repair protein RadC [Vibrio vulnificus MO6-24/O]
gi|326423775|ref|NP_759802.2| DNA repair protein RadC [Vibrio vulnificus CMCP6]
gi|32129962|sp|Q8DDY0|Y825_VIBVU RecName: Full=UPF0758 protein VV1_0825
gi|54036231|sp|Q7MPS7|Y285_VIBVY RecName: Full=UPF0758 protein VV0285
gi|37197209|dbj|BAC93049.1| DNA repair protein [Vibrio vulnificus YJ016]
gi|319932979|gb|ADV87843.1| DNA repair protein RadC [Vibrio vulnificus MO6-24/O]
gi|319999137|gb|AAO09329.2| DNA repair protein RadC [Vibrio vulnificus CMCP6]
Length = 224
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G +L+ E+L + L + +A LL+ F +L +F A
Sbjct: 12 PREKLLQRGPQSLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT Q + + ++ F F
Sbjct: 72 KGLGQAKYVQLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|295399379|ref|ZP_06809361.1| DNA repair protein RadC [Geobacillus thermoglucosidasius C56-YS93]
gi|312110061|ref|YP_003988377.1| DNA repair protein RadC [Geobacillus sp. Y4.1MC1]
gi|294978845|gb|EFG54441.1| DNA repair protein RadC [Geobacillus thermoglucosidasius C56-YS93]
gi|311215162|gb|ADP73766.1| DNA repair protein RadC [Geobacillus sp. Y4.1MC1]
Length = 226
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 50/126 (39%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+ +R R+R L G +LA +E+L ++L + +A LL+ F L + A +
Sbjct: 8 VPKDDRPRERLLSAGPESLADHELLAILLRTGTKEESVLQLAHRLLQHFEGLRLLKDASI 67
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+ I IG A+++ +RI + + + + + V + +F
Sbjct: 68 EEITSIKGIGTTKAVQILAAIELGRRIHRLVNNDRYVIRSPEDGAKYVMEDMRFLSQEHF 127
Query: 139 AYCFSI 144
+
Sbjct: 128 VAIYLN 133
>gi|172048112|sp|A5UDB6|Y7200_HAEIE RecName: Full=UPF0758 protein CGSHiEE_07200
Length = 221
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + + +
Sbjct: 9 PREKLLASGAKALSDYELLAIFLRTGIKGCPVISLSKNVLTHFGSLHALLSSDKKAFCSV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + F F
Sbjct: 69 KGLGITQFIQLQAITEMTKRYLKQEMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|49474229|ref|YP_032271.1| DNA repair protein radC [Bartonella quintana str. Toulouse]
gi|49239733|emb|CAF26115.1| DNA repair protein radC [Bartonella quintana str. Toulouse]
Length = 264
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 69/128 (53%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
Y GH RLR R+L+ NA+ YE LEL+LFR IPR +TK IAK+L+ F +L V GA
Sbjct: 44 HYQGHRERLRRRYLKSKGNAIEDYEYLELLLFRTIPRANTKPIAKSLIAHFGSLADVLGA 103
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+H LQE++ G A++LK++S + R+++A + + L + +
Sbjct: 104 DIHRLQEVHGCGPATAIDLKIISDVAGRLVRAQLFKRDIFSSWDKVLAYCKAVMAHETRE 163
Query: 137 NFAYCFSI 144
F F
Sbjct: 164 QFRVLFLD 171
>gi|251793907|ref|YP_003008639.1| DNA repair protein RadC [Aggregatibacter aphrophilus NJ8700]
gi|247535306|gb|ACS98552.1| DNA repair protein RadC [Aggregatibacter aphrophilus NJ8700]
Length = 219
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ G AL+ E+L + L I ++ +L+ F +L G+ A +
Sbjct: 7 PREKLLQYGAAALSDEELLAIFLRTGIKDCPVMQLSHNVLQHFGSLRGLITASQKQFCAV 66
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG ++L+ + ++R L A + T + ++ F F
Sbjct: 67 KGIGVTQFIQLQACTEMTRRYLLAELKEEHCFTSSDAVKMYLQTELEGLEREVFLVLFLD 126
>gi|150396672|ref|YP_001327139.1| DNA repair protein RadC [Sinorhizobium medicae WSM419]
gi|226736631|sp|A6U9H4|Y1459_SINMW RecName: Full=UPF0758 protein Smed_1459
gi|150028187|gb|ABR60304.1| DNA repair protein RadC [Sinorhizobium medicae WSM419]
Length = 260
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 65/131 (49%), Positives = 81/131 (61%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
Y GH +RLR R+ + G+ ALA YEILELILFRLIPR+DTK IAKALL RF TL GV
Sbjct: 37 EDAHYHGHRDRLRARYREYGDAALADYEILELILFRLIPRRDTKPIAKALLARFGTLAGV 96
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
FGAPLHLL E+ + + VAL+LKLV+ AS R+LK+ K+ L+ + +
Sbjct: 97 FGAPLHLLHEVKGVKESVALDLKLVATASHRMLKSELRNKQVLSSWSAVIDYCHAAMAHE 156
Query: 134 NANNFAYCFSI 144
F F
Sbjct: 157 TKEQFRILFLD 167
>gi|147669902|ref|YP_001214720.1| DNA repair protein RadC [Dehalococcoides sp. BAV1]
gi|146270850|gb|ABQ17842.1| DNA repair protein RadC [Dehalococcoides sp. BAV1]
Length = 272
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 60/142 (42%), Gaps = 3/142 (2%)
Query: 3 DFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
D S P + + GH RLR+RFL+ G + L YE++EL+L PR+D K AK
Sbjct: 8 DETPSSNPPANPN---EGHRQRLRERFLKAGLDGLNDYEVVELLLTLGTPRRDCKQAAKE 64
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
+K F +L V A L I IG ++ +KL+ SQR LK K Q
Sbjct: 65 AIKNFGSLRAVLEASPEELSGIKGIGAVNSVAIKLIKEVSQRYLKDGIIEKPVCNTAQQV 124
Query: 123 LISVERHYPMKNANNFAYCFSI 144
+ F +
Sbjct: 125 FDYLYCAMRGLKKEVFKVIYLD 146
>gi|73749140|ref|YP_308379.1| RadC family DNA repair protein [Dehalococcoides sp. CBDB1]
gi|289433114|ref|YP_003462987.1| DNA repair protein RadC [Dehalococcoides sp. GT]
gi|73660856|emb|CAI83463.1| DNA repair protein, RadC family [Dehalococcoides sp. CBDB1]
gi|288946834|gb|ADC74531.1| DNA repair protein RadC [Dehalococcoides sp. GT]
Length = 272
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 60/142 (42%), Gaps = 3/142 (2%)
Query: 3 DFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
D S P + + GH RLR+RFL+ G + L YE++EL+L PR+D K AK
Sbjct: 8 DETPSSNPPANPN---EGHRQRLRERFLKAGLDGLNDYEVVELLLTLGTPRRDCKQAAKE 64
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
+K F +L V A L I IG ++ +KL+ SQR LK K Q
Sbjct: 65 AIKNFGSLRAVLEASPEELSGIKGIGAVNSVAIKLIKEVSQRYLKDGIIEKPVCNTAQQV 124
Query: 123 LISVERHYPMKNANNFAYCFSI 144
+ F +
Sbjct: 125 FDYLYCAMRGLKKEVFKVIYLD 146
>gi|315122683|ref|YP_004063172.1| DNA repair protein RadC [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496085|gb|ADR52684.1| DNA repair protein RadC [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 237
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 88/144 (61%), Positives = 101/144 (70%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
++ F MSK +KD +D IGH NRLRDRFLQ G++ALA YEILELILF+LIPR+DTKSIA
Sbjct: 1 MKVFLMSKRSAKDFDIDCIGHRNRLRDRFLQGGDSALADYEILELILFKLIPRRDTKSIA 60
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
KALLKRF TLGGVFGAPLHLLQEI IGK ALELKL+SVASQRILK+ +K L
Sbjct: 61 KALLKRFITLGGVFGAPLHLLQEIEGIGKTAALELKLISVASQRILKSKLINQKILNSWS 120
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
L + + F F
Sbjct: 121 TLLDYCKITLAHEEREQFRILFLN 144
>gi|316931615|ref|YP_004106597.1| DNA repair protein RadC [Rhodopseudomonas palustris DX-1]
gi|315599329|gb|ADU41864.1| DNA repair protein RadC [Rhodopseudomonas palustris DX-1]
Length = 237
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 74/144 (51%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
++D S P Y GH RLR+RF + G +AL+ YE+LEL+LFR +PR+D K +A
Sbjct: 1 MDDAERSPQPGFAEAPHYHGHRERLRERFREAGADALSDYELLELVLFRALPRRDVKPLA 60
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
KAL+ RF + AP L+E++ +G+ +E+KL++ A+ R+ K + L+
Sbjct: 61 KALIARFGSFAEAVHAPAERLREVSGLGEAAIIEVKLIAAAAARVTKGQVKQRTVLSSWS 120
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 121 AVIDYCRTTMAFADKEQFRILFLD 144
>gi|118593437|ref|ZP_01550817.1| DNA repair protein RadC [Stappia aggregata IAM 12614]
gi|118433916|gb|EAV40574.1| DNA repair protein RadC [Stappia aggregata IAM 12614]
Length = 237
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 69/144 (47%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+++ + + D+ GH RLR+RF + GE LA YE+LE +LF +PR+DTK IA
Sbjct: 1 MKETTTASETPATAGGDHKGHRQRLRERFRKTGEQGLADYELLEFLLFSALPRQDTKPIA 60
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
KALL+RF + AP L+EI + L+ V + R KA ++ L Q
Sbjct: 61 KALLQRFGSFPAALAAPRERLKEIPGLSDISIDALQAVHASVIRFHKAGLEKRQVLDSWQ 120
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
+ ++ + F F
Sbjct: 121 KVMDYLQVSMGLAPVEQFRILFLD 144
>gi|74318606|ref|YP_316346.1| DNA repair protein RadC [Thiobacillus denitrificans ATCC 25259]
gi|123611212|sp|Q3SFR5|Y2588_THIDA RecName: Full=UPF0758 protein Tbd_2588
gi|74058101|gb|AAZ98541.1| DNA repair protein RadC [Thiobacillus denitrificans ATCC 25259]
Length = 224
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 45/126 (35%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R++ L++G AL E++ + L + K + + L++RF LG + A
Sbjct: 6 WPEDARPREKLLKQGAAALTDAELVAVFLRTGVAGKSAVDLGRDLIERFGGLGALCRADR 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+G+ L+ V ++R L + L+ + K F
Sbjct: 66 VAACRAPGVGEAKYALLQAVMEMARRTLAEDMQAGDALSSPAAVRDYLRLILRDKEYEVF 125
Query: 139 AYCFSI 144
F
Sbjct: 126 CCVFLN 131
>gi|262392595|ref|YP_003284449.1| DNA repair protein RadC [Vibrio sp. Ex25]
gi|262336189|gb|ACY49984.1| DNA repair protein RadC [Vibrio sp. Ex25]
Length = 224
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 46/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G AL E+L + L + +A L++ F +L +F A
Sbjct: 12 PREKLLQRGPQALTDAELLAIFLRTGTRGMNVIELADFLIQDFGSLRQLFSASEQEFCRH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT + + + F F
Sbjct: 72 KGLGQAKYVQLQAVLEMTQRYLAETLKRGDALTSPDQTKLYLSSILRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|30995411|ref|NP_439113.2| DNA repair protein RadC [Haemophilus influenzae Rd KW20]
gi|38372879|sp|P44952|Y952_HAEIN RecName: Full=UPF0758 protein HI_0952
Length = 221
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F L + A +
Sbjct: 9 PREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGPLHALLSADKKAFCSV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + + F F
Sbjct: 69 KGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|239827887|ref|YP_002950511.1| DNA repair protein RadC [Geobacillus sp. WCH70]
gi|259551864|sp|C5D5H7|Y2550_GEOSW RecName: Full=UPF0758 protein GWCH70_2550
gi|239808180|gb|ACS25245.1| DNA repair protein RadC [Geobacillus sp. WCH70]
Length = 226
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 51/126 (40%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+ R R+R L G +LA +E+L ++L + +A LLK F L + A +
Sbjct: 8 VPKDARPRERLLSSGPESLADHELLAILLRTGTKEESVLQLAHRLLKHFEGLRLLKDATI 67
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+ I IG A+++ +RI + +++ + + + V + +F
Sbjct: 68 EEITSIKGIGTTKAVQILAAIELGRRISRLSYNGRYVIRSPEDGAKYVMEDMRFLSQEHF 127
Query: 139 AYCFSI 144
+
Sbjct: 128 VAIYLN 133
>gi|1573977|gb|AAC22613.1| DNA repair protein (radC) [Haemophilus influenzae Rd KW20]
Length = 234
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F L + A +
Sbjct: 22 PREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGPLHALLSADKKAFCSV 81
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + + F F
Sbjct: 82 KGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLD 141
Query: 145 N 145
N
Sbjct: 142 N 142
>gi|310817115|ref|YP_003965079.1| DNA repair protein RadC [Ketogulonicigenium vulgare Y25]
gi|308755850|gb|ADO43779.1| DNA repair protein RadC [Ketogulonicigenium vulgare Y25]
Length = 252
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 16 LDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
YI H RLR RF+ G +AL YE+LEL+LFR IPR+D K +A+ LL+RF V
Sbjct: 30 PSYIRDHRTRLRSRFMAGGADALPDYELLELVLFRAIPRQDVKPLARRLLERFGDFNAVL 89
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
AP L++I +G V ELK++ A+ R+ +A + L+ L +
Sbjct: 90 SAPPQRLEQIEGVGPSVVTELKIIEAAAHRLARARVMQRPVLSGWDALLDYCHTVMAHRE 149
Query: 135 ANNFAYCFSI--NII 147
F F NI+
Sbjct: 150 IEQFRILFLDRKNIL 164
>gi|91774671|ref|YP_544427.1| DNA repair protein RadC [Methylobacillus flagellatus KT]
gi|122985645|sp|Q1H4K1|Y315_METFK RecName: Full=UPF0758 protein Mfla_0315
gi|91708658|gb|ABE48586.1| DNA replication and repair protein RadC [Methylobacillus
flagellatus KT]
Length = 224
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 52/122 (42%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ G AL+ E+L + L + K +A+ LLKRF++L G+F A +
Sbjct: 10 ERPREKLRAAGAMALSDAELLAIFLRTGVAGKSAVDLARELLKRFSSLNGIFAASAEEIC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+++ +G ++L+ + S+R L + LT Q + F F
Sbjct: 70 QVHGMGLSKFVQLQAIFEMSRRALLEQMQGRDVLTSPQAVRQYLSLRIGALPREVFIGIF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|323497063|ref|ZP_08102086.1| hypothetical protein VISI1226_16688 [Vibrio sinaloensis DSM 21326]
gi|323317907|gb|EGA70895.1| hypothetical protein VISI1226_16688 [Vibrio sinaloensis DSM 21326]
Length = 214
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 46/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ + G AL E+L + L + ++ LLK F +L +FGA +
Sbjct: 2 PREKLISHGPQALTDAELLAIFLRTGTRGMNVLELSDFLLKEFGSLRRLFGASQINFCQY 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ V +QR L LT Q + + K F +
Sbjct: 62 KGLGVAKYVQLQAVLELTQRYLSETLQRGDALTSPQQTKLYLSGVLRDKQREEFYVLYLD 121
Query: 145 N 145
N
Sbjct: 122 N 122
>gi|269959366|ref|ZP_06173749.1| DNA repair protein RadC [Vibrio harveyi 1DA3]
gi|269835803|gb|EEZ89879.1| DNA repair protein RadC [Vibrio harveyi 1DA3]
Length = 224
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L++G AL+ E+L + L + +A L++ F +L +F A +
Sbjct: 12 PREKLLKRGPQALSDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEREFCQH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT + + + + F F
Sbjct: 72 KGLGQAKYVQLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|240138796|ref|YP_002963269.1| DNA repair protein RadC [Methylobacterium extorquens AM1]
gi|240008766|gb|ACS39992.1| DNA repair protein RadC [Methylobacterium extorquens AM1]
Length = 248
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 48/132 (36%), Positives = 64/132 (48%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
D Y GH RLR RF Q G ALA YE+LEL LFR IPR+D K +AKAL+ RF +
Sbjct: 24 DETPHYHGHRERLRARFAQAGAEALADYELLELTLFRSIPRRDVKPLAKALIHRFGSFAE 83
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
V A L E+ + VA +LKLV A +R+ + + + L+ + +
Sbjct: 84 VVSAEPARLMEVEGVSAGVAADLKLVEAAGRRLARGAIAARPLLSSWSALIEYLRATMAF 143
Query: 133 KNANNFAYCFSI 144
F F
Sbjct: 144 SGREEFRVLFLD 155
>gi|84514871|ref|ZP_01002234.1| DNA repair protein RadC [Loktanella vestfoldensis SKA53]
gi|84511030|gb|EAQ07484.1| DNA repair protein RadC [Loktanella vestfoldensis SKA53]
Length = 220
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
H RLRDRFL G A+ YE+LEL+LFR IPR+D K +A+AL+ F V A +
Sbjct: 3 DHRKRLRDRFLAGGPAAVPDYELLELVLFRAIPRQDVKPLARALIDHFGDFNRVLSASVT 62
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
+ ++ G VALELK+V A+ R+ +A + ++ L ++ F
Sbjct: 63 QIGQVPGAGPAVALELKIVEAAAHRLARARVMQRHVVSSWDALLTYCHTVMAHRDTEQFR 122
Query: 140 YCFSI--NII 147
F N++
Sbjct: 123 ILFLDTKNVL 132
>gi|28896958|ref|NP_796563.1| DNA repair protein RadC [Vibrio parahaemolyticus RIMD 2210633]
gi|260877858|ref|ZP_05890213.1| DNA repair protein RadC [Vibrio parahaemolyticus AN-5034]
gi|260898016|ref|ZP_05906512.1| DNA repair protein RadC [Vibrio parahaemolyticus Peru-466]
gi|31076907|sp|Q87T86|Y184_VIBPA RecName: Full=UPF0758 protein VP0184
gi|28805166|dbj|BAC58447.1| DNA repair protein RadC [Vibrio parahaemolyticus RIMD 2210633]
gi|308089340|gb|EFO39035.1| DNA repair protein RadC [Vibrio parahaemolyticus Peru-466]
gi|308089972|gb|EFO39667.1| DNA repair protein RadC [Vibrio parahaemolyticus AN-5034]
gi|328471754|gb|EGF42631.1| hypothetical protein VP10329_01325 [Vibrio parahaemolyticus 10329]
Length = 224
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G AL E+L + L + +A L++ F +L +F A +
Sbjct: 12 PREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT + + + + F F
Sbjct: 72 KGLGQAKYVQLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|319651725|ref|ZP_08005851.1| DNA repair protein RadC [Bacillus sp. 2_A_57_CT2]
gi|317396544|gb|EFV77256.1| DNA repair protein RadC [Bacillus sp. 2_A_57_CT2]
Length = 229
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 47/123 (38%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R+RF+ G +L+ +E++ ++L + +A L+ F L + A L +
Sbjct: 14 DERPRERFVLNGPQSLSNHELIAILLRTGTKDESVLQLANRLITHFEGLRLLKDASLDEI 73
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG A++L +RI + + + + V + +F
Sbjct: 74 TAIKGIGSAKAIQLLAAVEIGRRISTLTYDDRYTIRSPEDGANYVMHDMRFLSQEHFVCL 133
Query: 142 FSI 144
+
Sbjct: 134 YLN 136
>gi|149376403|ref|ZP_01894165.1| DNA repair protein RadC [Marinobacter algicola DG893]
gi|149359244|gb|EDM47706.1| DNA repair protein RadC [Marinobacter algicola DG893]
Length = 224
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 44/129 (34%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R+R L G +L+ E+L + L ++A+ L + F L G+ A
Sbjct: 4 SDWPTDERPRERLLAHGAASLSDAELLAIFLRTGTTGMPVMALARHLTEAFGGLRGLMTA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
++ +G +++ ++R++ L + +
Sbjct: 64 SRRQFCDVKGLGTAKYAQVQAAMEMARRVMDEPLRQGDPLRSPEDTRRFLCSRLGTYPHE 123
Query: 137 NFAYCFSIN 145
F+ F N
Sbjct: 124 VFSGLFLDN 132
>gi|156972975|ref|YP_001443882.1| DNA repair protein RadC [Vibrio harveyi ATCC BAA-1116]
gi|166218799|sp|A7MSP7|Y653_VIBHB RecName: Full=UPF0758 protein VIBHAR_00653
gi|156524569|gb|ABU69655.1| hypothetical protein VIBHAR_00653 [Vibrio harveyi ATCC BAA-1116]
Length = 224
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G AL+ E+L + L + ++ L++ F +L +F A +
Sbjct: 12 PREKLLQRGPQALSDAELLAIFLRTGTQGMNVIELSDFLIQDFGSLRQLFSASEKEFCQH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT + + + + F F
Sbjct: 72 KGLGQAKYVQLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|89053211|ref|YP_508662.1| DNA repair protein RadC [Jannaschia sp. CCS1]
gi|88862760|gb|ABD53637.1| DNA repair protein RadC [Jannaschia sp. CCS1]
Length = 273
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
+ Y GH +RLR RFL G + YE+LEL+LF I R D K +AK LL
Sbjct: 42 LVTDNDGAKRPHYWGHRDRLRTRFLAGGHGPMPEYELLELMLFNAISRIDVKPLAKRLLA 101
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
F L GV A H L ++ +V L+L+ + R+ +A + ++ +
Sbjct: 102 AFGDLNGVIAASEHRLLQVEGATPKVYYHLRLMEAFAHRMGQAKVLQRDVVSSWDDLVAY 161
Query: 126 VERHYPMKNANNFAYCFSI--NII 147
+ F + N++
Sbjct: 162 CRTVMAHRETEQFRILYLNRRNVL 185
>gi|296444788|ref|ZP_06886751.1| DNA repair protein RadC [Methylosinus trichosporium OB3b]
gi|296257736|gb|EFH04800.1| DNA repair protein RadC [Methylosinus trichosporium OB3b]
Length = 241
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 67/133 (50%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
++ + GH RLR+RFL+ G+ ALA YE+LEL+LFR I R+D K +AKAL+ RF +
Sbjct: 16 REEAPHFHGHRQRLRERFLEAGDAALADYELLELVLFRAIARRDVKPLAKALIARFGSYS 75
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
A L+EI +G+ E+KL+ A++R+ + + L+ L
Sbjct: 76 EAVAARPERLREIEGLGEAAICEIKLIEAAARRLARGALQKRPALSSFMDVLDYCRTAMA 135
Query: 132 MKNANNFAYCFSI 144
F F
Sbjct: 136 YAEREEFRILFLD 148
>gi|283787728|ref|YP_003367593.1| DNA repair protein [Citrobacter rodentium ICC168]
gi|282951182|emb|CBG90875.1| DNA repair protein [Citrobacter rodentium ICC168]
Length = 221
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L++G L E+L L L P KD ++AK +L+ F +L + A +
Sbjct: 9 PREKLLEQGIETLTDAELLALFLRTGTPGKDVFTLAKEILEHFGSLYSLLTADYSQFVSV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +LK ++ ++R +A L + ++ + + F F
Sbjct: 69 TGIGVAKYAQLKGIAELARRFYEAKIKEANPLLSPELTQNFLQSQFAGEEREIFMVIFLD 128
>gi|84500637|ref|ZP_00998886.1| DNA repair protein [Oceanicola batsensis HTCC2597]
gi|84391590|gb|EAQ03922.1| DNA repair protein [Oceanicola batsensis HTCC2597]
Length = 251
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Query: 11 SKDSHLDYIG-HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT 69
YI H RLRDRFL G +A+ YE+LE++LFR R+D K + +ALL RF +
Sbjct: 24 KPAKRPSYIADHRARLRDRFLDGGADAMPDYELLEMVLFRANARRDMKPVGRALLDRFGS 83
Query: 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
V AP L I+ +G+ + ELKL+ A+QR+++ + L+ Q L +
Sbjct: 84 FNRVISAPPADLMRIDGVGRSLVAELKLIEAAAQRLMRDRVINRPVLSSWQALLDYCQTA 143
Query: 130 YPMKNANNFAYCFSI--NII 147
++ F F N++
Sbjct: 144 MAHRDTEQFRILFLDRKNVL 163
>gi|58617393|ref|YP_196592.1| DNA repair protein radC-like protein [Ehrlichia ruminantium str.
Gardel]
gi|58417005|emb|CAI28118.1| DNA repair protein radC homolog [Ehrlichia ruminantium str. Gardel]
Length = 230
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 62/134 (46%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ Y+GH R+R + L G L YEILE+IL+ PRKD K +AK L+K F T
Sbjct: 4 ENEQKTQYLGHRKRVRKKLLSGGSKGLLDYEILEVILYSSYPRKDVKPLAKRLIKHFGTF 63
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
VF A + L+E+ IG+ A + V A RIL+ + + Q + +
Sbjct: 64 AKVFFADFNQLKEVPGIGEASASAIFCVREALGRILREDIKSGIIINEWQKLIEYLRIKI 123
Query: 131 PMKNANNFAYCFSI 144
N NF +
Sbjct: 124 GNGNIENFHILYLN 137
>gi|57239372|ref|YP_180508.1| DNA repair protein radC-like protein [Ehrlichia ruminantium str.
Welgevonden]
gi|58579339|ref|YP_197551.1| DNA repair protein radC-like protein [Ehrlichia ruminantium str.
Welgevonden]
gi|57161451|emb|CAH58376.1| DNA repair protein RadC [Ehrlichia ruminantium str. Welgevonden]
gi|58417965|emb|CAI27169.1| DNA repair protein radC homolog [Ehrlichia ruminantium str.
Welgevonden]
Length = 230
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 62/134 (46%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ Y+GH R+R + L G L YEILE+IL+ PRKD K +AK L+K F T
Sbjct: 4 ENEQKTQYLGHRKRVRKKLLSGGSKGLLDYEILEVILYSSYPRKDVKPLAKRLIKHFGTF 63
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
VF A + L+E+ IG+ A + V A RIL+ + + Q + +
Sbjct: 64 AKVFFADFNQLKEVPGIGEASASAIFCVREALGRILREDIKSGIIINEWQKLIEYLRIKI 123
Query: 131 PMKNANNFAYCFSI 144
N NF +
Sbjct: 124 GNGNIENFHILYLN 137
>gi|34498534|ref|NP_902749.1| DNA repair protein RadC [Chromobacterium violaceum ATCC 12472]
gi|81654991|sp|Q7NTH5|Y3079_CHRVO RecName: Full=UPF0758 protein CV_3079
gi|34104390|gb|AAQ60748.1| DNA repair protein RadC [Chromobacterium violaceum ATCC 12472]
Length = 224
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 47/125 (37%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R++ L +G L E+L + L I + +A+ LL+ F +L + APL
Sbjct: 6 WPESERPREKLLSQGAATLNDSELLAIFLRTGIKGVNAVELARRLLQEFGSLSALLAAPL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+ +G+ +L + ++R L + L+ Q + + F
Sbjct: 66 PAFKAKPGLGEAKYAQLMACTELARRALSEQMRLGDALSSPQQVRDYLRLSIGRREVETF 125
Query: 139 AYCFS 143
F
Sbjct: 126 VVIFL 130
>gi|270308617|ref|YP_003330675.1| DNA repair protein [Dehalococcoides sp. VS]
gi|270154509|gb|ACZ62347.1| DNA repair protein [Dehalococcoides sp. VS]
Length = 275
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 55/125 (44%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR+RFL+ G + L YE++EL+L PR+D K AK +K F +L V A
Sbjct: 25 GHRQRLRERFLKAGLDGLNDYEVVELLLTLGTPRRDCKQAAKEAIKHFGSLRAVLEASPA 84
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L I IG+ ++ L L+ S+R LK K Q + F
Sbjct: 85 ELLSIKGIGEVNSMALTLIREVSRRYLKDGIMEKPVCNTAQQVFDYLYCAMRGLKKEVFK 144
Query: 140 YCFSI 144
+
Sbjct: 145 VIYLD 149
>gi|311696212|gb|ADP99085.1| DNA repair protein RadC-like protein [marine bacterium HP15]
Length = 224
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 45/124 (36%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R+R L G L+ E+L L L ++A+ L++ F+ L G+ A
Sbjct: 9 DERPRERLLAHGPQTLSDAELLALFLRTGTTGMPVMALARHLIEEFSGLRGLLTASRRQF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
++ +G +++ ++R++ L + + FA
Sbjct: 69 CDVKGLGTAKYAQVQAAMEMARRVMDEPLRQGDPLRSPEDTRRFLTSRLGTYPHEVFAGL 128
Query: 142 FSIN 145
F N
Sbjct: 129 FLDN 132
>gi|149184792|ref|ZP_01863110.1| hypothetical protein ED21_28778 [Erythrobacter sp. SD-21]
gi|148832112|gb|EDL50545.1| hypothetical protein ED21_28778 [Erythrobacter sp. SD-21]
Length = 232
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 62/139 (44%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M A S GH RLR R L G ALA YE+LE +LF I + DTK +AK L+
Sbjct: 1 MPGADKNASSHAGAGHRERLRQRLLTGGAEALADYELLEFLLFSAIRQGDTKPLAKRLIA 60
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
+F + V AP L ++ +G+ A L VS++++R+ + + + L Q L
Sbjct: 61 QFGSFSSVMNAPPGALAQVKGMGEASAAALHAVSLSARRMARGSIQQQPVLGSWQALLDY 120
Query: 126 VERHYPMKNANNFAYCFSI 144
+ +
Sbjct: 121 LAIDMGELKHERVRVLYLD 139
>gi|209693807|ref|YP_002261735.1| DNA repair protein RadC [Aliivibrio salmonicida LFI1238]
gi|238058401|sp|B6EPP3|Y192_ALISL RecName: Full=UPF0758 protein VSAL_I0192
gi|208007758|emb|CAQ77877.1| DNA repair protein RadC [Aliivibrio salmonicida LFI1238]
Length = 224
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 48/122 (39%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ L G +L E+L + L I + +A LLK F +L + G+ +
Sbjct: 11 RPREKLLALGPKSLTDAELLAIFLRTGIKGMNAIELADKLLKEFGSLRKLLGSNENEFCS 70
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+G +L+ V ++R L + LT + + R ++ F F
Sbjct: 71 HKGLGTAKFAQLQAVVEMTERYLFEKIEKEDALTSPEHTKRYLTRILRDRHREAFYVLFL 130
Query: 144 IN 145
N
Sbjct: 131 DN 132
>gi|269965912|ref|ZP_06180005.1| DNA repair protein RadC [Vibrio alginolyticus 40B]
gi|269829465|gb|EEZ83706.1| DNA repair protein RadC [Vibrio alginolyticus 40B]
Length = 214
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 46/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G AL E+L + L + +A L++ F +L +F A
Sbjct: 2 PREKLLQRGPQALTDAELLAIFLRTGTRGMNVIELADFLIQDFGSLRQLFSASEEEFCRH 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT + + + F F
Sbjct: 62 KGLGQAKYVQLQAVLEMTQRYLAETLKRGDALTSPDQTKLYLSSILRDRQREAFYILFLD 121
Query: 145 N 145
N
Sbjct: 122 N 122
>gi|126653704|ref|ZP_01725623.1| DNA repair protein RadC [Bacillus sp. B14905]
gi|126589741|gb|EAZ83876.1| DNA repair protein RadC [Bacillus sp. B14905]
Length = 223
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R+R +++G +L+ E+L ++L + +A +L F L + A + +
Sbjct: 9 DRPRERLIRQGAESLSNQELLAILLRTGTKEESVLVLANRVLTVFERLHHLKHATIEEMV 68
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I IG+ A+++ +R+ + K + Q + N +F F
Sbjct: 69 AIKGIGEVKAIQILAAIELGRRLAQKQNDEKFTIRSPQDAAAYLMPDMTSLNQEHFVVLF 128
Query: 143 SI 144
Sbjct: 129 LN 130
>gi|327439515|dbj|BAK15880.1| DNA repair protein [Solibacillus silvestris StLB046]
Length = 232
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 57/139 (41%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M+ P + + + +R R+R +++G +L+ E++ ++L R+ ++A +L
Sbjct: 1 MTVQPLLNMKIHDVHESDRPRERLIRQGAKSLSNQELIAILLGTGTKRESVLTVANRVLI 60
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
F L + A L + EI IG+ A+ L +R+ + + + +
Sbjct: 61 NFEKLHNLKHATLEEITEIKGIGEAKAVLLLAAIELGRRLASRDLEERFTIRSPEDAATF 120
Query: 126 VERHYPMKNANNFAYCFSI 144
+ + +F F
Sbjct: 121 LMQDMTSLQQEHFVCLFLN 139
>gi|330447140|ref|ZP_08310790.1| DNA repair RadC family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491331|dbj|GAA05287.1| DNA repair RadC family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 224
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 47/122 (38%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ L G +AL E+L + L + +A LL F +L + GA + +
Sbjct: 11 RPREKLLSHGSDALTDAELLAIFLRTGTQGMNALELATHLLDEFGSLRSLLGAEKQIFCQ 70
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G L+ V +R L+ LT Q + + K+ F F
Sbjct: 71 MKGLGPAKFALLQAVLALGERYLEETLKKDDVLTSPQNTRRYLAKKLRDKHREAFYILFL 130
Query: 144 IN 145
N
Sbjct: 131 DN 132
>gi|163851630|ref|YP_001639673.1| DNA repair protein RadC [Methylobacterium extorquens PA1]
gi|163663235|gb|ABY30602.1| DNA repair protein RadC [Methylobacterium extorquens PA1]
Length = 248
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 63/129 (48%)
Query: 16 LDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFG 75
Y GH RLR RF Q G ALA YE+LEL LFR IPR+D K +AKAL+ RF + V
Sbjct: 27 PHYHGHRERLRARFAQAGAEALADYELLELTLFRSIPRRDVKPLAKALIHRFGSFAEVVS 86
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
A L E+ + VA +LKLV A +R+ + + + L+ + +
Sbjct: 87 AEPARLMEVEGVSAGVAADLKLVEAAGRRLARGAIAARPLLSSWGALIEYLRATMAFSGR 146
Query: 136 NNFAYCFSI 144
F F
Sbjct: 147 EEFRVLFLD 155
>gi|323495229|ref|ZP_08100311.1| hypothetical protein VIBR0546_16286 [Vibrio brasiliensis LMG 20546]
gi|323310489|gb|EGA63671.1| hypothetical protein VIBR0546_16286 [Vibrio brasiliensis LMG 20546]
Length = 222
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL E+L + L + +++ L+ F +L +F A L
Sbjct: 10 PREKLLSHGPQALTDAELLAIFLRTGTHGMNVLALSDHLISEFGSLRSLFSANLEQFCRY 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ V +QR L + + LT Q + + K F F
Sbjct: 70 KGLGVAKYVQLQAVLEMTQRYLAESLQRGEALTSPQQTKLYLSGLLRDKQREEFYVLFLD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|261250535|ref|ZP_05943110.1| DNA repair protein RadC [Vibrio orientalis CIP 102891]
gi|260939104|gb|EEX95091.1| DNA repair protein RadC [Vibrio orientalis CIP 102891]
Length = 222
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G ++L E+L + L + +++ L+K F +L +F A L
Sbjct: 10 PREKLLSHGPHSLTDAELLAIFLRTGTQGMNVLTLSDHLIKEFGSLRALFSADLDEFCHH 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ +QR L + LT + + + K F F
Sbjct: 70 KGLGVAKFVQLQATLEMTQRYLAETLKRGEALTSPEQTKLYLSGLLRDKQREEFYVLFLD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|260779661|ref|ZP_05888551.1| DNA repair protein RadC [Vibrio coralliilyticus ATCC BAA-450]
gi|260604470|gb|EEX30774.1| DNA repair protein RadC [Vibrio coralliilyticus ATCC BAA-450]
Length = 220
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G +L E+L + L + ++ LLK +L +F A +
Sbjct: 8 PREKLLSRGPQSLTDAELLAIFLRTGTQGMNVLQLSDKLLKDLGSLRSLFAASKEEFCQH 67
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L + LT Q + + + F F
Sbjct: 68 KGLGEAKYVQLQAVLEMTQRYLSETLQRGEALTSPQQTKLYLSSMLRDRQREAFYILFLD 127
Query: 145 N 145
N
Sbjct: 128 N 128
>gi|304310173|ref|YP_003809771.1| DNA repair protein [gamma proteobacterium HdN1]
gi|301795906|emb|CBL44107.1| DNA repair protein [gamma proteobacterium HdN1]
Length = 224
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 48/123 (39%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ L+KG +AL+ E+L + I + + + +L+ F L + A
Sbjct: 9 DERPREKMLEKGASALSDAELLAIFFRTGIVGMNAIELGREVLRHFGGLRPMLDASAEEF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+I IG ++L+ +R L+ + + T + ++ FA
Sbjct: 69 TDIKGIGAAKFVQLQAALELGKRYLEQSLIRDEAFTSPERVGRYLQAQLRSHQREVFAAL 128
Query: 142 FSI 144
F
Sbjct: 129 FLD 131
>gi|92115088|ref|YP_575016.1| DNA repair protein RadC [Chromohalobacter salexigens DSM 3043]
gi|122419198|sp|Q1QT91|Y2972_CHRSD RecName: Full=UPF0758 protein Csal_2972
gi|91798178|gb|ABE60317.1| DNA replication and repair protein RadC [Chromohalobacter
salexigens DSM 3043]
Length = 224
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 46/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L G +AL+ E+L + L + + +A+ LL F L + A
Sbjct: 4 HEWPEGERPREKLLALGASALSDAELLAIFLRVGVKGRSAVDLARDLLLAFGGLRPLLEA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L + +G+ ++L+ S+R L + LT +
Sbjct: 64 DLARFCAEHGLGEAKYVQLQASLELSRRHLGSLLERGAALTSPTLVRRFLTSQLRHLPHE 123
Query: 137 NFAYCFSI 144
FA F
Sbjct: 124 AFAALFLD 131
>gi|229543680|ref|ZP_04432740.1| DNA repair protein RadC [Bacillus coagulans 36D1]
gi|229328100|gb|EEN93775.1| DNA repair protein RadC [Bacillus coagulans 36D1]
Length = 227
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R+R ++ G +L+ E+L ++L + +A L++ F L + A L +
Sbjct: 13 DRPRERLIRTGAESLSNQELLAILLRTGTKEESVLELANRLIRHFEGLRFLKDASLEEMT 72
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I IG A+++ +RI + + Q V + +F +
Sbjct: 73 SIKGIGTAKAVQILAAIELGRRIANLQHDTRYVIRTPQDGANYVMNDMRFLSQEHFVCLY 132
Query: 143 SI 144
Sbjct: 133 LN 134
>gi|229846012|ref|ZP_04466124.1| DNA repair protein RadC [Haemophilus influenzae 7P49H1]
gi|229811016|gb|EEP46733.1| DNA repair protein RadC [Haemophilus influenzae 7P49H1]
Length = 214
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + A +
Sbjct: 2 PREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSV 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + + F F
Sbjct: 62 KGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQCEEREVFMVLFLD 121
Query: 145 N 145
N
Sbjct: 122 N 122
>gi|167647755|ref|YP_001685418.1| DNA repair protein RadC [Caulobacter sp. K31]
gi|167350185|gb|ABZ72920.1| DNA repair protein RadC [Caulobacter sp. K31]
Length = 196
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M++ P +GH RLR+R G AL YE+LEL LFR R D K +AKALL
Sbjct: 1 MAERP--TRAAHQLGHRERLRERAKAGGLVALPDYELLELYLFRTFARGDVKPMAKALLA 58
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF + G A + L+ + +G+ A+++KL+ A+ R + + + ++ L
Sbjct: 59 RFGSFGATISASIEDLKTVQGVGETAAIDIKLLHEAALRAGRDKIAKRPVISSWTALLGY 118
Query: 126 VERHYPMKNANNFAYCFSIN 145
V + F F N
Sbjct: 119 VRVALANEPREQFRVLFLDN 138
>gi|85708932|ref|ZP_01039998.1| DNA repair protein RadC [Erythrobacter sp. NAP1]
gi|85690466|gb|EAQ30469.1| DNA repair protein RadC [Erythrobacter sp. NAP1]
Length = 272
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 65/125 (52%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR+R L+ G ALA YE+LE +LF I + DTK +AKAL++RF +L GV A
Sbjct: 55 GHRERLRERLLKGGAEALADYEVLEYLLFAAIKQGDTKPVAKALIERFGSLAGVLNADPA 114
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
+Q + +G+ A LK V++AS+R+ ++ K L Q + +
Sbjct: 115 AMQRVKGVGRTSAAALKSVALASRRMARSEIVQKPLLGSWQALIDYLTTDMAHLTVERVR 174
Query: 140 YCFSI 144
+
Sbjct: 175 VLYLD 179
>gi|323136973|ref|ZP_08072053.1| DNA repair protein RadC [Methylocystis sp. ATCC 49242]
gi|322397734|gb|EFY00256.1| DNA repair protein RadC [Methylocystis sp. ATCC 49242]
Length = 244
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 4 FRMSKAPS--KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
R PS ++ + Y GH RLRDRF+ GENALA YE++EL+LFR I R+D K +AK
Sbjct: 9 KRNGPTPSGLREESIHYHGHRQRLRDRFMAAGENALADYELMELLLFRAILRRDVKPLAK 68
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
AL+ RF + A L+EI+ +G+ +ELKLV A++R+ + + L+
Sbjct: 69 ALIDRFGSFAEAVAARPERLREIDGLGEAAIVELKLVEAAARRLARGKLEKRTVLSSFMD 128
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 129 VMDYCRTAMAYAEREEFRILFLD 151
>gi|56475876|ref|YP_157465.1| DNA repair protein, radC [Aromatoleum aromaticum EbN1]
gi|81677578|sp|Q5P7Z7|Y442_AZOSE RecName: Full=UPF0758 protein AZOSEA04420
gi|56311919|emb|CAI06564.1| DNA repair protein, radC [Aromatoleum aromaticum EbN1]
Length = 225
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 44/126 (34%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+ R R++ L +G AL+ E+L L L + K +A+ LL++F +L + A
Sbjct: 6 WPENERPREKLLTRGTAALSDAELLALFLRVGMRGKSAVDLARDLLQQFGSLTRLCAASA 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
I +G +L+ V ++R L + + F
Sbjct: 66 AEFSAIPGMGLAKYAQLQAVMELARRALAEQMNDADVFESPLAVRNWLRLRIGSLPHEVF 125
Query: 139 AYCFSI 144
Sbjct: 126 HVLLLD 131
>gi|298368845|ref|ZP_06980163.1| DNA repair protein RadC [Neisseria sp. oral taxon 014 str. F0314]
gi|298282848|gb|EFI24335.1| DNA repair protein RadC [Neisseria sp. oral taxon 014 str. F0314]
Length = 225
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 45/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ R R++ L++G AL+ E+L ++L +A+ LL F +LG + A
Sbjct: 4 KHWPEGERPREKLLERGAGALSDAELLAILLRVGTRGMSAVDLARYLLNGFGSLGKLMNA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +G + ++ +RIL + Q + + +
Sbjct: 64 DIKSLSSYKGMGTASFTQFAVIREIGRRILSEELRENIIFSNPQTVADYLRLNLGHERVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSYALLLN 131
>gi|253575692|ref|ZP_04853028.1| DNA repair protein RadC [Paenibacillus sp. oral taxon 786 str. D14]
gi|251845030|gb|EES73042.1| DNA repair protein RadC [Paenibacillus sp. oral taxon 786 str. D14]
Length = 231
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R ++ G AL++ E+L ++L ++ +A+ LL L G+ L +
Sbjct: 17 ERPRERMIKYGAGALSHAELLAILLRTGTRQESAVHMAQRLLAELGGLRGLVDVSLEEMT 76
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ IG A++LK QR+ K+ + + + +F F
Sbjct: 77 NLKGIGPAKAVQLKAGIELGQRLAKSRLPDQAVIRSPHDAAELLMEQMRYLQKEHFVCLF 136
Query: 143 SI 144
Sbjct: 137 LN 138
>gi|90023318|ref|YP_529145.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
gi|122995779|sp|Q21EE6|Y3678_SACD2 RecName: Full=UPF0758 protein Sde_3678
gi|89952918|gb|ABD82933.1| DNA repair protein RadC [Saccharophagus degradans 2-40]
Length = 224
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G +AL+ E+L + L + K +A+ LL F L + A
Sbjct: 10 ERPREKLLNRGAHALSDAELLAIFLRTGVKGKSAVDLARELLAYFGGLRPLLEASQQDFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G +L+ V S+R L A K LT V + + FA
Sbjct: 70 QAQGLGNAKFSQLQAVLEMSRRHLAAALEQKTSLTSTTAVKQFVSAQLRHRQSEVFALIL 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|120556469|ref|YP_960820.1| DNA repair protein RadC [Marinobacter aquaeolei VT8]
gi|166218785|sp|A1U6L4|Y3564_MARAV RecName: Full=UPF0758 protein Maqu_3564
gi|120326318|gb|ABM20633.1| DNA replication and repair protein RadC [Marinobacter aquaeolei
VT8]
Length = 224
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 44/124 (35%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R+R L G +L+ E+L + L ++A+ L+ F+ L G+ A
Sbjct: 9 DERPRERLLAHGAQSLSDAELLAIFLRTGTTGMPVMALARHLIDEFSGLRGLMTASRRQF 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
++ +G +++ ++R++ L + FA
Sbjct: 69 LQVKGLGTAKYAQVQAAMEMARRVMDEPLRQGDPLRSPADTRRFLTSRLGTYPHEVFAGL 128
Query: 142 FSIN 145
F N
Sbjct: 129 FLDN 132
>gi|148652303|ref|YP_001279396.1| DNA repair protein RadC [Psychrobacter sp. PRwf-1]
gi|172048495|sp|A5WCQ5|Y491_PSYWF RecName: Full=UPF0758 protein PsycPRwf_0491
gi|148571387|gb|ABQ93446.1| DNA repair protein RadC [Psychrobacter sp. PRwf-1]
Length = 226
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 44/129 (34%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+R R++ L G L EIL + L ++ +A++L+ F + + A
Sbjct: 4 KDWHEEDRPREKLLNLGAEYLTDAEILAIFLRTGSKQQSAIELARSLIDHFGGIAELLAA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
P + + IG +L +R L + L Q + ++
Sbjct: 64 PKEAVLACHGIGTAKYAQLLASLEMGKRYLNSELKSGNSLNRSQVVKDYITTQIRRESKE 123
Query: 137 NFAYCFSIN 145
FA N
Sbjct: 124 VFAVLCLDN 132
>gi|319408552|emb|CBI82205.1| DNA repair protein RadC [Bartonella schoenbuchensis R1]
Length = 264
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 69/128 (53%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
Y GH RLR R+L+ NA+ YE LEL+LFR +PR +TK IAK L++RF +L V A
Sbjct: 44 HYEGHRERLRKRYLKTKGNAIEDYEYLELLLFRTLPRVNTKIIAKNLIERFGSLTDVLNA 103
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
++LLQE+ G A++LK++S + R+ +A S + + L + +
Sbjct: 104 DINLLQEVPGCGPATAIDLKIISGVAGRLARAQLSKRDIFSTWDKVLAYCKAVMAHETRE 163
Query: 137 NFAYCFSI 144
F F
Sbjct: 164 QFRVLFLD 171
>gi|260459829|ref|ZP_05808083.1| DNA repair protein RadC [Mesorhizobium opportunistum WSM2075]
gi|259034631|gb|EEW35888.1| DNA repair protein RadC [Mesorhizobium opportunistum WSM2075]
Length = 253
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 58/132 (43%), Positives = 78/132 (59%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
+ Y+GH +RLR+RF G +AL YE+LEL+LFRLIPR DTK AKALL RF TL
Sbjct: 29 EEKPHYLGHRDRLRERFASAGPDALPDYELLELLLFRLIPRADTKPAAKALLARFGTLAE 88
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
V GAP+ LLQE+ IG VAL+LK+V+ +QR+ ++ ++ L+ Q L
Sbjct: 89 VLGAPVGLLQEVKGIGPTVALDLKIVAATAQRMARSEIHGREILSSWQQLLDYCRSAMAF 148
Query: 133 KNANNFAYCFSI 144
+ F F
Sbjct: 149 EAREQFRILFLD 160
>gi|218708245|ref|YP_002415866.1| DNA repair protein RadC [Vibrio splendidus LGP32]
gi|254789669|sp|B7VHK2|Y182_VIBSL RecName: Full=UPF0758 protein VS_0182
gi|218321264|emb|CAV17214.1| DNA repair protein radC homolog [Vibrio splendidus LGP32]
Length = 224
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G ++L+ E+L + L + ++ L+K F +L +F A
Sbjct: 12 PREKLLSRGPDSLSDAELLAIFLRTGTQGMNVLELSDKLIKDFGSLRHLFSATEAEFCAH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L S LT + + + F F
Sbjct: 72 KGMGQAKYVQLQAVLEMTQRYLAETLSRGDALTSPSHTKLYLSSILRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|27383284|ref|NP_774813.1| DNA repair protein [Bradyrhizobium japonicum USDA 110]
gi|27356458|dbj|BAC53438.1| radC [Bradyrhizobium japonicum USDA 110]
Length = 206
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ Y GH RLR+RF G +AL+ YE+LE+ LF +PR+DTK +AK L+K F +
Sbjct: 11 KPEDAPHYHGHRERLRERFYSAGADALSDYELLEMALFPALPRRDTKPLAKTLIKIFGSF 70
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
V AP+ L+EI+ IG+ +LKL++ A+ R+ K + + L+ +
Sbjct: 71 AEVVHAPVARLREIDGIGESAIHQLKLIAAAAHRVAKGEVNSRNALSSWNEVIDYCRTSI 130
Query: 131 ---PMKNANNFAYCFSI 144
+ F F
Sbjct: 131 MVVAFADKEQFRLLFLD 147
>gi|319898913|ref|YP_004159006.1| DNA repair protein RadC [Bartonella clarridgeiae 73]
gi|319402877|emb|CBI76428.1| DNA repair protein RadC [Bartonella clarridgeiae 73]
Length = 261
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 65/137 (47%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
K + + Y GH RLR R+L+ NA+ YE LEL+L R I R D K IAK LL F
Sbjct: 32 KKKNSKINKHYQGHRERLRKRYLKTKGNAIEDYEYLELLLSRTILRADIKPIAKNLLASF 91
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
+L V A +H LQEI G A++LK++S + R+ +A + + L +
Sbjct: 92 GSLADVLKADIHRLQEIEGCGPATAIDLKIISDVAGRLARAQLYKRDIFSSWDKVLAYCK 151
Query: 128 RHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 152 AVMAHETREQFRVLFLD 168
>gi|260770727|ref|ZP_05879657.1| DNA repair protein RadC [Vibrio furnissii CIP 102972]
gi|260614308|gb|EEX39497.1| DNA repair protein RadC [Vibrio furnissii CIP 102972]
gi|315178477|gb|ADT85391.1| DNA repair protein RadC [Vibrio furnissii NCTC 11218]
Length = 224
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 51/121 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G AL+ E+L + L P + +++ LL+ F +L +F AP
Sbjct: 12 PREKLLSRGPQALSDAELLAIFLRTGTPGMNVLALSDFLLREFGSLRALFSAPKDQFCAH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L + LT Q + + + F F
Sbjct: 72 KGLGEAKFVQLQAVLEMTQRYLAETLKRGEALTSPQQTKLYLSSVLRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|260363782|ref|ZP_05776542.1| DNA repair protein RadC [Vibrio parahaemolyticus K5030]
gi|308113336|gb|EFO50876.1| DNA repair protein RadC [Vibrio parahaemolyticus K5030]
Length = 203
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G AL E+L + L + +A L++ F +L +F A +
Sbjct: 12 PREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT + + + + F F
Sbjct: 72 KGLGQAKYVQLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|126662279|ref|ZP_01733278.1| DNA repair protein [Flavobacteria bacterium BAL38]
gi|126625658|gb|EAZ96347.1| DNA repair protein [Flavobacteria bacterium BAL38]
Length = 227
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 1/128 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL-KRFATLGGVFGAP 77
+R R++FL KG++ L+ E+L +++ + + + +L L +
Sbjct: 8 WAEDDRPREKFLLKGKSTLSDSELLAILIGSGSRNESAVQLCQRILASSENNLNTLGKMS 67
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L + IG+ A+ + +R + K +T + ++
Sbjct: 68 ISQLMQFKGIGEAKAISIAAALELGRRRRAEDAIELKKITSSKAVFDIMQPIIGELPHEE 127
Query: 138 FAYCFSIN 145
F + N
Sbjct: 128 FWVLYLNN 135
>gi|260581787|ref|ZP_05849584.1| DNA repair protein RadC [Haemophilus influenzae NT127]
gi|260095380|gb|EEW79271.1| DNA repair protein RadC [Haemophilus influenzae NT127]
Length = 234
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F + + + +
Sbjct: 22 PREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSFHALLSSDKKAFCSV 81
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + F F
Sbjct: 82 KGLGITQFIQLQAITEMTKRYLKQEMLSTPIINDPETVKLFLLTELQNEEREVFMVLFLD 141
Query: 145 N 145
N
Sbjct: 142 N 142
>gi|325577760|ref|ZP_08148035.1| DNA repair protein RadC [Haemophilus parainfluenzae ATCC 33392]
gi|325160505|gb|EGC72631.1| DNA repair protein RadC [Haemophilus parainfluenzae ATCC 33392]
Length = 221
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 50/121 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G AL +E+L + L I ++ ++L+ F +L + A ++
Sbjct: 9 PREKLLKYGVEALEDHELLAIFLRTGIKGCPVMELSHSVLQHFGSLRALLSADKEAFCKV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ + ++R LK I+ + + ++ + F F
Sbjct: 69 KGLGITQFIQLQATTEMTKRYLKQELLIEHVFSDTSTVKLYLQAELHHEEREIFMVLFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|308188656|ref|YP_003932787.1| DNA repair protein radC [Pantoea vagans C9-1]
gi|308059166|gb|ADO11338.1| DNA repair protein radC [Pantoea vagans C9-1]
Length = 218
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 50/121 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ + G ++L+ E+L + L P ++ +A +L+ F +L + + + +I
Sbjct: 6 PREKLQKLGAHSLSDTELLAIFLRTGSPGQNVLELAGQMLEGFGSLYQLMTSDKAAICKI 65
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L ++ ++R + + + + Q ++ + F F
Sbjct: 66 KGVGDAKLAQLHAIAELAKRFFASKLARESVMENPQITRQYLQSLLAHQEREIFMALFLD 125
Query: 145 N 145
N
Sbjct: 126 N 126
>gi|260902399|ref|ZP_05910794.1| DNA repair protein RadC [Vibrio parahaemolyticus AQ4037]
gi|308110861|gb|EFO48401.1| DNA repair protein RadC [Vibrio parahaemolyticus AQ4037]
Length = 224
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G AL E+L + L + +A L++ F +L +F A +
Sbjct: 12 PREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT + + + + F F
Sbjct: 72 KGLGQAKYVQLQAVLEMTQRYLAETRKRGDALTSPEQTKLYLSSILRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|121999079|ref|YP_001003866.1| DNA repair protein RadC [Halorhodospira halophila SL1]
gi|166218781|sp|A1WZF2|Y2301_HALHL RecName: Full=UPF0758 protein Hhal_2301
gi|121590484|gb|ABM63064.1| DNA replication and repair protein RadC [Halorhodospira halophila
SL1]
Length = 224
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 44/127 (34%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R+R +Q+G AL+ E+L + L + +A+ LL F+ L G+ A
Sbjct: 6 WPREERPRERLIQRGPQALSDAELLAIFLRTGRRGQSAVELARELLAAFSGLRGLLEADR 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+G +++ ++R L L+ + + F
Sbjct: 66 ETFAARPGLGDAKYAQMQAALEIARRHLGEQLQRGPTLSSPAQTRTYLAALLRDHPSEVF 125
Query: 139 AYCFSIN 145
F N
Sbjct: 126 GGLFLDN 132
>gi|332139456|ref|YP_004425194.1| DNA repair protein RadC [Alteromonas macleodii str. 'Deep ecotype']
gi|238693291|sp|B4S2B7|Y049_ALTMD RecName: Full=UPF0758 protein MADE_00049
gi|327549478|gb|AEA96196.1| DNA repair protein RadC [Alteromonas macleodii str. 'Deep ecotype']
Length = 225
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 43/126 (34%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R++ LQ G L+ E++ ++L + + K+ S+A LL L GV A
Sbjct: 6 WPKSERPREKLLQYGAENLSDAELIAVLLGKGVKGKNAVSVAHELLNELGCLRGVVTATK 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
++ IG + + +R L+ + ++ F
Sbjct: 66 DEFAKVTGIGPCKYAQFQAGFEIFKRNLEIKLQREDVFNNVDDTKRYLQAKLRDCQREKF 125
Query: 139 AYCFSI 144
A
Sbjct: 126 ALLMLD 131
>gi|300721251|ref|YP_003710521.1| hypothetical protein XNC1_0176 [Xenorhabdus nematophila ATCC 19061]
gi|297627738|emb|CBJ88264.1| putative associated with replication fork, DNA repair protein
[Xenorhabdus nematophila ATCC 19061]
Length = 230
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 46/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L E+L + L +A+ LLK F +L + A
Sbjct: 18 PREKLLAYGAVSLTDAELLAIFLRTGTRGIPVVQMAEYLLKSFGSLYHLLSADYADFCSH 77
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ VS ++R + + + ++ ++ ++ F
Sbjct: 78 KGMGQCKYVQLQAVSELAKRFFSSQFIHEDIMSSPTMTQSYLQDLLSWQDREVFVVLCLT 137
Query: 145 N 145
N
Sbjct: 138 N 138
>gi|319407236|emb|CBI80875.1| DNA repair protein RadC [Bartonella sp. 1-1C]
Length = 264
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 62/128 (48%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
Y GH RLR R+L+ NA+ YE LEL+L R I R D K IAK LL F +L V A
Sbjct: 44 HYQGHRERLRKRYLKTKGNAIEDYEYLELLLSRTILRADIKPIAKNLLASFGSLADVLKA 103
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+H LQEI G A++LK++S + R+ +A + + L + +
Sbjct: 104 DIHRLQEIEGCGPATAIDLKIISDVAGRLARAQLYKRDIFSSWDKVLAYCKAVMAHETRE 163
Query: 137 NFAYCFSI 144
F F
Sbjct: 164 QFRVLFLD 171
>gi|254495321|ref|ZP_05108245.1| DNA repair protein RadC [Polaribacter sp. MED152]
gi|85819675|gb|EAQ40832.1| DNA repair protein RadC [Polaribacter sp. MED152]
Length = 228
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 49/125 (39%), Gaps = 1/125 (0%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGVFGAPLHL 80
+R R++ L KG++AL+ E++ +++ ++ ++++ +LK + + +
Sbjct: 12 DDRPREKLLAKGKSALSDAELIAILIGSGNRQESAVALSQRILKSVEGNINQLAKLTVEK 71
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L IG+ A+ + +R K +T + ++ F
Sbjct: 72 LSTFKGIGEAKAIAIITALELGKRRQLETALEKPKITSSKAVFNLMQPIIGDLEHEEFWV 131
Query: 141 CFSIN 145
F N
Sbjct: 132 LFLNN 136
>gi|114569594|ref|YP_756274.1| DNA repair protein RadC [Maricaulis maris MCS10]
gi|114340056|gb|ABI65336.1| DNA repair protein RadC [Maricaulis maris MCS10]
Length = 226
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 65/132 (49%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
+ + GH +RLR++ G AL YE+LEL LFR IPR+D K IAK L+ RF LGG
Sbjct: 2 TASATHTGHRDRLREKLTSAGGLALHDYELLELYLFRCIPRRDVKPIAKDLIARFGDLGG 61
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
V A + L + + ++ A+ELKL+ S+R+ + ++ +T +
Sbjct: 62 VASASVGQLSSVRGVSEKTAVELKLIKALSERLAREQVIGRRVITSWSALVAYCRTAMQH 121
Query: 133 KNANNFAYCFSI 144
F F
Sbjct: 122 ATTEQFRVLFLD 133
>gi|329851338|ref|ZP_08266095.1| DNA repair protein RadC family protein [Asticcacaulis biprosthecum
C19]
gi|328840184|gb|EGF89756.1| DNA repair protein RadC family protein [Asticcacaulis biprosthecum
C19]
Length = 243
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 9/148 (6%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
+ S+ D+ GH RLR+R L+ G +AL YE+LEL LFR IP++D K +AKALL
Sbjct: 3 PADTSSEPLKPDHKGHRERLRERALKTGASALPDYELLELYLFRSIPQRDVKPLAKALLT 62
Query: 66 RFATLGGVFGAPLHLLQEINRIGKR---------VALELKLVSVASQRILKANWSIKKFL 116
RF +L V APL + ++ + + +AL+L+L+ A++R++ + +
Sbjct: 63 RFGSLPAVLSAPLEDMMTVSALDTKGRALRVTTDIALDLQLMFEATRRVVAEPLTRTTVI 122
Query: 117 TPGQPCLISVERHYPMKNANNFAYCFSI 144
+ V+ + F F
Sbjct: 123 ASWSALMAYVQVTLAHEPREQFRVLFLD 150
>gi|158929981|gb|ABW82962.1| DNA repair protein [uncultured bacterium pEAF66]
Length = 224
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 51/128 (39%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R+R + +G +AL+ E+L L L I + + + L+++F ++ G+F A
Sbjct: 4 KDWPVQQRPRERLISEGASALSDPELLALFLRVGIKGRSAVELGRDLIEQFGSIQGLFAA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L + +G EL+ V +QR + + L + + +
Sbjct: 64 SLAQFSAVRGMGPAKFAELQAVMELAQRAICEQMQAGEALGSPELVRQYLRMTLGRQQHE 123
Query: 137 NFAYCFSI 144
+F F
Sbjct: 124 SFVVLFLD 131
>gi|315633557|ref|ZP_07888847.1| DNA repair protein RadC [Aggregatibacter segnis ATCC 33393]
gi|315477599|gb|EFU68341.1| DNA repair protein RadC [Aggregatibacter segnis ATCC 33393]
Length = 232
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 46/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L E+L + L I ++K +L+ F +L G+ A +
Sbjct: 20 PREKLLKYGVATLTDAELLAIFLRTGIKDCPVMQLSKNVLQHFGSLRGLISANQKQFCAV 79
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG ++L+ + ++R L A + + + ++ F F
Sbjct: 80 KGIGITQFIQLQACTEMTRRYLLAELKEGYCFSSSETVKMYLQTELENTEREIFLVLFLD 139
Query: 145 N 145
N
Sbjct: 140 N 140
>gi|169829398|ref|YP_001699556.1| DNA repair protein radC-like protein [Lysinibacillus sphaericus
C3-41]
gi|168993886|gb|ACA41426.1| DNA repair protein radC-like protein [Lysinibacillus sphaericus
C3-41]
Length = 223
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R+R +++G +L+ E++ ++L + +A +L F L + A + +
Sbjct: 9 DRPRERLMRQGAESLSNQELIAILLRTGTKEESVLVLANRVLTVFERLHYLKHATIEEMV 68
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I IG+ A++L +R+ + K + Q + N +F F
Sbjct: 69 AIKGIGEVKAIQLLAAIELGRRLAQKQNDEKFTIRSPQDAAAYLMPDMTSLNQEHFVVLF 128
Query: 143 SI 144
Sbjct: 129 LN 130
>gi|119773468|ref|YP_926208.1| DNA repair protein RadC [Shewanella amazonensis SB2B]
gi|166218792|sp|A1S2D2|Y327_SHEAM RecName: Full=UPF0758 protein Sama_0327
gi|119765968|gb|ABL98538.1| DNA repair protein RadC [Shewanella amazonensis SB2B]
Length = 225
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 47/120 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G L+ E+L ++L + ++ +A+ L+ F L +F A + +
Sbjct: 12 PREKLLQRGAAHLSDAELLAVLLRNGVSGQNAVDLARELIGEFGGLRPLFSATKQQVCRL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ + ++R+ + LT + + FA
Sbjct: 72 QGLGPVKYAQLQASAELARRLAGESLQRGAVLTSPDLTRDYLRFQLADRAYEVFAVLLLD 131
>gi|23010157|ref|ZP_00050945.1| COG2003: DNA repair proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 208
Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Query: 2 EDFRMSKAP---SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKS 58
E ++ AP + + Y GH RLR RF ++G LA YE+LEL LFR IPR+D K
Sbjct: 7 ELPGLADAPVPAAAEEVPHYHGHRERLRARFAEQGAEGLADYELLELALFRAIPRRDVKP 66
Query: 59 IAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTP 118
+AKAL+ RF + V A L E+ + V +LKL+ A +R+ + + + L+
Sbjct: 67 LAKALINRFGSFAEVVSAEPARLAEVEGVSAGVVNDLKLIEAAGRRLARGAIAARPLLSS 126
Query: 119 GQPCLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 127 WSALIEYLRTTMAFAAREEFRVLFLD 152
>gi|261378701|ref|ZP_05983274.1| DNA repair protein RadC [Neisseria cinerea ATCC 14685]
gi|269144853|gb|EEZ71271.1| DNA repair protein RadC [Neisseria cinerea ATCC 14685]
Length = 225
Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 45/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L ++L +A+ LL+ F +LG + A
Sbjct: 4 KQWPEGERPREKLLERGATALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGKLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +G + +V +RIL L+ + H +
Sbjct: 64 DIGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIVLSDPDTVADYLRLHLGHEKIE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|114564978|ref|YP_752492.1| DNA repair protein RadC [Shewanella frigidimarina NCIMB 400]
gi|122298392|sp|Q07WG1|Y3828_SHEFN RecName: Full=UPF0758 protein Sfri_3828
gi|114336271|gb|ABI73653.1| DNA repair protein RadC [Shewanella frigidimarina NCIMB 400]
Length = 225
Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L KG L+ E+L +IL + ++ +A+ ++ +F L + A + ++
Sbjct: 12 PREKLLLKGAGHLSDAELLAVILRNGLAGQNAVDLARNMINQFGGLRSLLSASKSQVCKL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ S+RI N + LT + R ++ FA
Sbjct: 72 AGVGPVKYAQLQAAVEISKRIAHENLQRGQILTNPDLTRDYLMRQLADRSYEVFALLLLD 131
>gi|149202958|ref|ZP_01879929.1| DNA repair protein RadC [Roseovarius sp. TM1035]
gi|149143504|gb|EDM31540.1| DNA repair protein RadC [Roseovarius sp. TM1035]
Length = 251
Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 6 MSKAPSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
+++ S YI H RLR RFL+ G A+ YE+LEL+LFR IPR+D K +A ALL
Sbjct: 19 VAEGQRSASQPSYIRDHRTRLRSRFLEGGAAAIPDYELLELVLFRAIPRRDVKPLAHALL 78
Query: 65 KRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
+F GV APL L + +G+ VA ELK+V A+ R+ +A ++ ++ L
Sbjct: 79 AQFGDFNGVISAPLDRLIALPGVGEAVATELKIVEAAAHRLARARVLRRQVISSWDALLD 138
Query: 125 SVERHYPMKNANNFAYCFSI--NII 147
F + NI+
Sbjct: 139 YCHTTMAHAEIEQFRVFYLDRKNIL 163
>gi|301154718|emb|CBW14181.1| protein associated with replication fork, possible DNA repair
protein [Haemophilus parainfluenzae T3T1]
Length = 221
Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 51/121 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G AL +E+L + L I +++ ++L+ F +L + A ++
Sbjct: 9 PREKLLKYGVEALEDHELLAIFLRTGIKGCPVMALSHSVLQHFGSLRALLSADKEAFCKV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ + ++R LK I+ + + ++ + F F
Sbjct: 69 KGLGITQFIQLQATTEMTKRYLKQELLIEHVFSDTSTVKLYLQAELHHEEREIFMVLFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|284800095|ref|ZP_05985708.2| DNA repair protein RadC [Neisseria subflava NJ9703]
gi|284795938|gb|EFC51285.1| DNA repair protein RadC [Neisseria subflava NJ9703]
Length = 230
Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 44/128 (34%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L G AL+ E+L ++L +A+ LL F +LG + A
Sbjct: 10 KEWPEGERPREKLLAHGAAALSDAELLAILLRVGTRGMSAVDLARYLLSEFGSLGKLMSA 69
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L +G + +V +RIL + + L+ + + H +
Sbjct: 70 DAKTLAAYKGMGLASYTQFAVVKEIGRRILGEDLQEQMVLSNPKSVADYLRLHLGHEKIE 129
Query: 137 NFAYCFSI 144
Sbjct: 130 VSVALLLN 137
>gi|186475352|ref|YP_001856822.1| DNA repair protein RadC [Burkholderia phymatum STM815]
gi|184191811|gb|ACC69776.1| DNA repair protein RadC [Burkholderia phymatum STM815]
Length = 242
Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 52/137 (37%), Gaps = 1/137 (0%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
++P + + + + R+R L G AL+ E++ L+L +P + +A++LL+R
Sbjct: 14 RSPIRRATPAWPT-RDMPRERLLDAGPAALSDTELVALVLGSGLPGHNVFDVARSLLQRS 72
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
+L + + +G +L + ++R L + + + +
Sbjct: 73 GSLRAMLDGTPEDFDGVRGVGPAKRAQLLAIMEMARRALAEKMRERPLIDSPEAVEDYLR 132
Query: 128 RHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 133 LLIGSRPYEVFICLFLD 149
>gi|194017399|ref|ZP_03056011.1| DNA repair protein RadC [Bacillus pumilus ATCC 7061]
gi|194011267|gb|EDW20837.1| DNA repair protein RadC [Bacillus pumilus ATCC 7061]
Length = 232
Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 52/128 (40%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
++ H + R+RF++ G ++L+ +E++ ++L ++ I+ LL+ F L V A
Sbjct: 12 KHLPHDEKPRERFIKYGPSSLSNHELVAILLRTGTKKESVLQISARLLQTFGGLRSVKEA 71
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ + +I +GK A+ L R+ + + + V
Sbjct: 72 SIEEMSKIRGVGKAKAISLLAALELGTRLHHQTTDNRYVIRTPEDGANFVMEDMRFLTQE 131
Query: 137 NFAYCFSI 144
NF +
Sbjct: 132 NFVCLYLN 139
>gi|239996967|ref|ZP_04717491.1| DNA repair protein RadC [Alteromonas macleodii ATCC 27126]
Length = 225
Score = 127 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 44/126 (34%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+ R R++ LQ G +L+ E++ ++L + + K S+A LL L GV A
Sbjct: 6 WPKNERPREKLLQHGAESLSDAELIAVLLGKGVKGKSAVSVAHELLNELGCLRGVVTATK 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+I +G + + +R L+ + ++ F
Sbjct: 66 ERFAKITGVGPCKYAQFQAGFEIFKRNLEIKLKRQDVFNNVDDTKRYLQAKLRDCEREKF 125
Query: 139 AYCFSI 144
A
Sbjct: 126 ALLMLD 131
>gi|268325704|emb|CBH39292.1| probable DNA repair protein radC homolog [uncultured archaeon]
Length = 330
Score = 127 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 48/134 (35%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
L + R R++ L G + L E+L + L IP K IA LL +F +
Sbjct: 85 RSTHQLKRLRKEERPREKLLTYGSSKLTTSELLAIFLRSGIPGKSAIVIANDLLTQFGGV 144
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
G+F A L +I +G ++K V ++ LK + + + +
Sbjct: 145 KGIFEADKAKLMDIEGVGAAKVAQIKAVQALAEEYLKESMKSVSKVRNSKEVFDYLYLTM 204
Query: 131 PMKNANNFAYCFSI 144
F F
Sbjct: 205 RDLKIEIFKVIFLD 218
>gi|319404226|emb|CBI77819.1| DNA repair protein RadC [Bartonella rochalimae ATCC BAA-1498]
Length = 264
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 62/128 (48%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
Y GH RLR R+L+ NA+ YE LEL+L R I R D K IAK LL F +L V A
Sbjct: 44 HYQGHRERLRKRYLKTKGNAIEDYEYLELLLSRTILRADIKPIAKNLLASFGSLADVLKA 103
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+H LQEI G A++LK++S + R+ +A + + L + +
Sbjct: 104 DIHRLQEIEGCGPATAVDLKIISDVAGRLARAQLYKRDIFSSWDKVLAYCKAVMAHETRE 163
Query: 137 NFAYCFSI 144
F F
Sbjct: 164 QFRVLFLD 171
>gi|224827125|ref|ZP_03700221.1| DNA repair protein RadC [Lutiella nitroferrum 2002]
gi|224600634|gb|EEG06821.1| DNA repair protein RadC [Lutiella nitroferrum 2002]
Length = 224
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 44/121 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G L+ E+L + L I +A+ L+ F +L + A L +
Sbjct: 10 ERPREKLLAQGAGRLSDAELLAIFLRTGIKGLSAVDMARRLMTEFGSLSRLLSANLAEFE 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L +R L + L+ Q + +++ F F
Sbjct: 70 RQPGLGVAKYTQLMATKELVRRALAEEMKLADALSSPQAVRDFLRLSIGLRDVEVFVVIF 129
Query: 143 S 143
Sbjct: 130 L 130
>gi|319637952|ref|ZP_07992718.1| DNA repair protein radC [Neisseria mucosa C102]
gi|317401107|gb|EFV81762.1| DNA repair protein radC [Neisseria mucosa C102]
Length = 224
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 46/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L ++L +A+ LL F +LG + A
Sbjct: 4 KEWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLSEFGSLGKLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L +G + +V +RIL + + L+ + + H +
Sbjct: 64 DAKTLSACKGMGLASYTQFAVVKEIGRRILGEDLQEQMVLSNPKSVADYLRLHLGHEKIE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|119943849|ref|YP_941529.1| DNA repair protein RadC [Psychromonas ingrahamii 37]
gi|171704612|sp|A1SR15|Y056_PSYIN RecName: Full=UPF0758 protein Ping_0056
gi|119862453|gb|ABM01930.1| DNA repair protein RadC [Psychromonas ingrahamii 37]
Length = 225
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 52/131 (39%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
+ L + R R++ LQKG AL+ E+L + L D +++K LL +F +L +
Sbjct: 2 TKLKDWPNQERPREKLLQKGTAALSDAELLAIFLRTGCRGVDVVTLSKQLLSQFGSLHAL 61
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
F A E +G+ ++L+ V S R L+ S LT +
Sbjct: 62 FAASESDFCEKKGLGQAKYVQLQAVLEMSSRYLQEPLSKGNALTSAAQTKAFLIAKMHNL 121
Query: 134 NANNFAYCFSI 144
FA
Sbjct: 122 PYEVFAAILLD 132
>gi|88797504|ref|ZP_01113093.1| DNA repair protein RadC [Reinekea sp. MED297]
gi|88779676|gb|EAR10862.1| DNA repair protein RadC [Reinekea sp. MED297]
Length = 224
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 51/127 (40%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L G +L+ E+L + L IP D +A+++L RF L +F A
Sbjct: 4 KEWPQAQRPREKLLHSGAASLSDAELLAIFLRTGIPGLDAVGLAQSILNRFGNLTSLFAA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
E +G ++L+ V ++R LKA+ + + LT +
Sbjct: 64 DQARFCEGPGLGPAKYVQLQAVLEMARRYLKADLTQRASLTSPGDTRQFLLAQMSHLQNE 123
Query: 137 NFAYCFS 143
F +
Sbjct: 124 QFCCIWL 130
>gi|49475599|ref|YP_033640.1| DNA repair protein radC [Bartonella henselae str. Houston-1]
gi|49238406|emb|CAF27633.1| DNA repair protein radC [Bartonella henselae str. Houston-1]
Length = 264
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 67/128 (52%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
Y GH RLR R+L+ NA+ YE LEL+LFR IPR +TK IAK+L+ F +L V GA
Sbjct: 44 YYQGHRERLRRRYLKSKGNAIEDYEYLELLLFRTIPRANTKPIAKSLIAHFGSLADVLGA 103
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+H LQE+ G AL+LK++S + R+ +A + + L + +
Sbjct: 104 DIHRLQEVQGCGPATALDLKIISDVAGRLARAQLFKRDIFSSWDQVLAYCKAVMAHETRE 163
Query: 137 NFAYCFSI 144
F F
Sbjct: 164 QFRVLFLD 171
>gi|225075521|ref|ZP_03718720.1| hypothetical protein NEIFLAOT_00534 [Neisseria flavescens
NRL30031/H210]
gi|224953156|gb|EEG34365.1| hypothetical protein NEIFLAOT_00534 [Neisseria flavescens
NRL30031/H210]
Length = 230
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 44/128 (34%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L G AL+ E+L ++L +A+ LL F +LG + A
Sbjct: 10 KEWPEGERPREKLLAHGAAALSDAELLAILLRVGTRGMSAVDLARYLLGEFGSLGKLMSA 69
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L +G + +V +RIL + + L+ + + H +
Sbjct: 70 DAKTLAAYKGMGLASYTQFAVVKEIGRRILGEDLQEQIVLSNPKSVADYLRLHLGHEKIE 129
Query: 137 NFAYCFSI 144
Sbjct: 130 VSVALLLN 137
>gi|3024521|sp|P72255|Y2304_RHOCA RecName: Full=UPF0758 protein
gi|1658114|gb|AAB18255.1| RadC [Rhodobacter capsulatus]
Length = 214
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 63/120 (52%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
LR+RFL G A+ YE+LELILFR +PR+D K +A+ LL F + G V AP L E+
Sbjct: 2 LRERFLTGGAEAMPDYELLELILFRALPRQDVKPLARRLLDVFGSFGHVLAAPPARLTEV 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ V ELK+V A+QR+ ++ + L+ Q L + F F
Sbjct: 62 TGVGEAVVQELKIVEAAAQRLARSRVLQRPVLSSWQALLDYCHTAMAHRPTEQFRVLFLD 121
>gi|194290593|ref|YP_002006500.1| DNA repair protein radc [Cupriavidus taiwanensis LMG 19424]
gi|238692771|sp|B3R6F7|Y2508_CUPTR RecName: Full=UPF0758 protein RALTA_A2508
gi|193224428|emb|CAQ70439.1| DNA repair protein radC homolog, associated with replication fork
[Cupriavidus taiwanensis LMG 19424]
Length = 228
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 46/122 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L+ G AL+ E+L ++L K +A+ LL RF +L +F A L
Sbjct: 10 ERPREKLLESGAAALSDAELLAVLLRVGAAGKSAVDLARELLHRFGSLTALFAAQGQALA 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G +++ + ++R L + + + F F
Sbjct: 70 GVRGMGAAKFAQVQAIPELARRALAESLRLPSGFDSPDSVRSYLRLTLAPLQHEVFMCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|149181794|ref|ZP_01860285.1| DNA repair protein RadC [Bacillus sp. SG-1]
gi|148850535|gb|EDL64694.1| DNA repair protein RadC [Bacillus sp. SG-1]
Length = 229
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R+R +Q G +L+ E+L +IL + +A +L F L + A L +
Sbjct: 14 DERPRERMVQSGAASLSNQELLAIILRTGTKSESVLQLANRVLTTFEGLRLLKEASLEEI 73
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG A+++ +RI + + + + V + +F
Sbjct: 74 MNIKGIGLAKAVQIMAALEIGRRIGNLAYDDRYSIRSPEDGANYVMNDMRFLSQEHFVCL 133
Query: 142 FSI 144
+
Sbjct: 134 YLN 136
>gi|241759982|ref|ZP_04758080.1| DNA repair protein RadC [Neisseria flavescens SK114]
gi|241319436|gb|EER55866.1| DNA repair protein RadC [Neisseria flavescens SK114]
Length = 224
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 44/128 (34%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L G AL+ E+L ++L +A+ LL F +LG + A
Sbjct: 4 KEWPEGERPREKLLAHGAAALSDAELLAILLRVGTRGMSAVDLARYLLSEFGSLGKLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L +G + +V +RIL + + L+ + + H +
Sbjct: 64 DAKTLAAYKGMGLASYTQFAVVKEIGRRILGEDLQEQIILSNPKSVADYLRLHLGHEKIE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|319783917|ref|YP_004143393.1| DNA repair protein RadC [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169805|gb|ADV13343.1| DNA repair protein RadC [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 253
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/132 (43%), Positives = 77/132 (58%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
D Y+GH +RLR+RF G +AL YE+LEL+LFRLIPR DTK AKALL RF TL
Sbjct: 29 DEKPHYLGHRDRLRERFALAGPDALPDYELLELLLFRLIPRADTKPAAKALLARFGTLAE 88
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
V GAP+ LLQE+ IG VAL+LK+++ +QR+ + ++ L+ Q L
Sbjct: 89 VLGAPVGLLQEVKGIGPAVALDLKILAATAQRMARGEVHGREILSSWQQLLDYCRSAMAF 148
Query: 133 KNANNFAYCFSI 144
+ F F
Sbjct: 149 EAREQFRILFLD 160
>gi|15603017|ref|NP_246089.1| DNA repair protein RadC [Pasteurella multocida subsp. multocida
str. Pm70]
gi|13431801|sp|P57913|Y1152_PASMU RecName: Full=UPF0758 protein PM1152
gi|12721500|gb|AAK03236.1| RadC [Pasteurella multocida subsp. multocida str. Pm70]
Length = 224
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G AL E+L + L I +++ +L+ F +L G+ A ++
Sbjct: 12 PREKLLRFGAPALTDEELLAIFLRTGIKGCSVMQLSRHVLQHFHSLRGLMSATQTEFCQL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ + S+R L+ + + + ++ K F F
Sbjct: 72 KGLGITQFIQLQACTEMSKRYLQEELKLTQAFKNSENVRFYLQATLENKEREIFQVLFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|319405664|emb|CBI79287.1| DNA repair protein RadC [Bartonella sp. AR 15-3]
Length = 264
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 62/128 (48%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
Y GH RLR R+L+ NA+ YE LEL+L R I R D K IAK LL F +L V A
Sbjct: 44 HYQGHRERLRKRYLKTKGNAIEDYEYLELLLSRTILRADIKPIAKNLLANFGSLADVLTA 103
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+H LQEI G A++LK++S + R+ +A + + L + +
Sbjct: 104 DIHRLQEIEGCGPATAIDLKIISDVAGRLARAQLYKRDIFSSWDKVLAYCKAVMAHETRE 163
Query: 137 NFAYCFSI 144
F F
Sbjct: 164 QFRVLFLD 171
>gi|254561399|ref|YP_003068494.1| DNA repair protein RadC [Methylobacterium extorquens DM4]
gi|254268677|emb|CAX24636.1| DNA repair protein RadC [Methylobacterium extorquens DM4]
Length = 248
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 63/132 (47%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
D Y GH RLR RF Q G ALA YE+LEL LFR IPR+ K +AKAL+ RF +
Sbjct: 24 DETPHYHGHRERLRARFAQAGAEALADYELLELTLFRSIPRRYVKPLAKALIHRFGSFAE 83
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
V A L E+ + VA +LKLV A +R+ + + + L+ + +
Sbjct: 84 VVSAEPARLMEVEGVSAGVAADLKLVEAAGRRLARGAIAARPLLSSWGALIEYLRATMAF 143
Query: 133 KNANNFAYCFSI 144
F F
Sbjct: 144 SGREEFRVLFLD 155
>gi|170693582|ref|ZP_02884740.1| DNA repair protein RadC [Burkholderia graminis C4D1M]
gi|170141364|gb|EDT09534.1| DNA repair protein RadC [Burkholderia graminis C4D1M]
Length = 254
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 1/141 (0%)
Query: 4 FRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
R + AP+ + H R+R + +G L+ E++ L+L +P D S+A+ L
Sbjct: 22 ARPADAPNPRRGRKWPKHDM-PRERLIDQGPAVLSDTEMIVLVLGSGLPGHDVFSVAREL 80
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
L RF +L + A + IG +L + ++R L + + +
Sbjct: 81 LDRFGSLRAMLDATYADFDGLRGIGPAKKAQLLAIMEMARRSLVDKMRRRSLMNSPEAVE 140
Query: 124 ISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 141 DYLRLLIGGRPQEVFVSLFLD 161
>gi|146309768|ref|YP_001174842.1| DNA repair protein RadC [Enterobacter sp. 638]
gi|166918667|sp|A4W511|Y101_ENT38 RecName: Full=UPF0758 protein Ent638_0101
gi|145316644|gb|ABP58791.1| DNA replication and repair protein RadC [Enterobacter sp. 638]
Length = 221
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L E+L L L K +A+ LL+ F +L G+ A L + +
Sbjct: 9 PREKMLSFGITSLTDAELLALFLRTGTSGKSVFVLAQELLQHFGSLHGLLNANLDEFRYV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +LK ++ ++R L + ++ F F
Sbjct: 69 EGIGLAKYAQLKGIAELARRYHSVRVLGDNPLLSPEMTKDFLQSQLSDAEREVFMVIFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|307546416|ref|YP_003898895.1| DNA repair protein RadC [Halomonas elongata DSM 2581]
gi|307218440|emb|CBV43710.1| DNA repair protein RadC [Halomonas elongata DSM 2581]
Length = 224
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L G AL+ E+L + L +P + +A+ L F L + A
Sbjct: 10 ERPREKLLALGSEALSDAELLAIFLRVGVPGRSAVDLARDTLTAFGGLRPLLEADERAFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G+ ++L+ V ++R L + + LT + FA F
Sbjct: 70 AGRGLGQAKYVQLQAVLELARRHLASRLDREAALTSPGLVRDYLTSRLRHLGHEEFAALF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|146298177|ref|YP_001192768.1| DNA repair protein RadC [Flavobacterium johnsoniae UW101]
gi|229485553|sp|A5FMW5|Y413_FLAJ1 RecName: Full=UPF0758 protein Fjoh_0413
gi|146152595|gb|ABQ03449.1| DNA repair protein RadC [Flavobacterium johnsoniae UW101]
Length = 229
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 49/129 (37%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
++ R++ + KG+ AL+ E++ +++ + ++++ +L L ++
Sbjct: 9 KDWSEDDKPREKLMLKGKEALSDAELMAILIGSGSRNESAVALSQRILASAKNLNSLWKM 68
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L + IG+ A+ + +R + K +T + ++
Sbjct: 69 SVSQLIKFKGIGEAKAVSIVAALELGRRQRAEDILKLKKITSSKDAFTIMQPIIGELPHE 128
Query: 137 NFAYCFSIN 145
F F N
Sbjct: 129 EFWVLFLNN 137
>gi|91786850|ref|YP_547802.1| DNA repair protein RadC [Polaromonas sp. JS666]
gi|91696075|gb|ABE42904.1| DNA replication and repair protein RadC [Polaromonas sp. JS666]
Length = 244
Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 3/144 (2%)
Query: 4 FRMSKAPSKDSHL---DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
F P + + R R++ L +G AL+ E+L L+L +P K+ +
Sbjct: 8 FAPLPLPDRTPSPMLLKDLPEDARPREKLLARGPAALSDAELLALLLRTGLPGKNALQMG 67
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
+ L+ F + G+ L+ I +G EL V ++R L K + Q
Sbjct: 68 QELVDTFGGVAGLLHTGPEALKSIKGLGPAKRAELVAVLELARRALAEELKEKALFSTPQ 127
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
++ + FA F
Sbjct: 128 AVRDYLQLQLGGRPHEIFAVLFLD 151
>gi|225024085|ref|ZP_03713277.1| hypothetical protein EIKCOROL_00953 [Eikenella corrodens ATCC
23834]
gi|224943110|gb|EEG24319.1| hypothetical protein EIKCOROL_00953 [Eikenella corrodens ATCC
23834]
Length = 233
Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 43/127 (33%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ + R R++ L +G AL+ E+L ++L +A+ LL+ F +L + A
Sbjct: 4 KHWPENERPREKLLHRGAGALSDAELLAILLRVGTQGMSAVDLARYLLQEFGSLNRLLSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
P L +G+ + +V +R+L + +
Sbjct: 64 PAAELTMHKGMGEAAYCQFAVVREIGRRLLAEEMRDTPAFNSPDAVANYLVLQLAHEPVE 123
Query: 137 NFAYCFS 143
Sbjct: 124 VSVAMLL 130
>gi|167855900|ref|ZP_02478650.1| DNA repair protein RadC [Haemophilus parasuis 29755]
gi|167852988|gb|EDS24252.1| DNA repair protein RadC [Haemophilus parasuis 29755]
Length = 238
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 50/121 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G AL+ E+L + L I +++++L F +L G+ A L +I
Sbjct: 10 PREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKI 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ ++R L + + + ++ + F F
Sbjct: 70 KGLGQIQYIQLQATKEMTKRYLSQQMKVNEMVDSPYLAVMYFQSELESWEREVFMVIFLD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|171769881|sp|A7MQ95|Y4094_ENTS8 RecName: Full=UPF0758 protein ESA_04094
Length = 230
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ ++ G L+ E+L + L P D ++AK LL F +L G+ A + ++I
Sbjct: 18 PREKLMRYGAADLSDEELLAIFLRTGTPGMDVMTLAKRLLAHFGSLYGLLSADIRPFRDI 77
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +LK + ++R ++ + L +E + F F
Sbjct: 78 GGVGMAKYAQLKAIGELARRYYRSRPCEETALLSPTITRDFLESQLAEQEREVFLVIFLD 137
>gi|56415619|ref|YP_152694.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197364546|ref|YP_002144183.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|73913739|sp|Q5PC30|YICR_SALPA RecName: Full=UPF0758 protein yicR
gi|238690754|sp|B5BI12|YICR_SALPK RecName: Full=UPF0758 protein yicR
gi|56129876|gb|AAV79382.1| putative DNA repair protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197096023|emb|CAR61610.1| putative DNA repair protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 221
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +L+ E+L L L P KD ++AK +L+ F +L G+ A + +
Sbjct: 9 PREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSADFAQFRGV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG +LK ++ ++R + + L + ++ + F F
Sbjct: 69 NGIGLAKFAQLKGIAELARRYYSVRMNEESALLSPEMTREFLQSQLTGEEREIFLVIFLD 128
>gi|113460290|ref|YP_718349.1| DNA repair protein RadC [Haemophilus somnus 129PT]
gi|170719078|ref|YP_001783364.1| DNA repair protein RadC [Haemophilus somnus 2336]
gi|123031084|sp|Q0I0X9|Y144_HAES1 RecName: Full=UPF0758 protein HS_0144
gi|189029396|sp|B0UUW7|Y009_HAES2 RecName: Full=UPF0758 protein HSM_0009
gi|112822333|gb|ABI24422.1| DNA repair protein [Haemophilus somnus 129PT]
gi|168827207|gb|ACA32578.1| DNA repair protein RadC [Haemophilus somnus 2336]
Length = 222
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 50/121 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G ++L E+L + L I +++ +L F++L G+ A ++
Sbjct: 10 PREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQM 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ + ++R L + T + ++ K+ F F
Sbjct: 70 KGLGITQFVQLQACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|288575704|ref|ZP_05977454.2| DNA repair protein RadC [Neisseria mucosa ATCC 25996]
gi|288567139|gb|EFC88699.1| DNA repair protein RadC [Neisseria mucosa ATCC 25996]
Length = 232
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 47/133 (35%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K+ + R R++ L +G AL+ E+L ++L +A+ LL F +LG
Sbjct: 5 KNMSIKQWPEGERPREKLLARGAGALSDAELLAILLRVGTRGMSAVDLARYLLNEFGSLG 64
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
+ A L +G + +V +RIL + L+ + + H
Sbjct: 65 KLMSADAKTLSAYKGMGLASFTQFAVVKEIGRRILGEDLQENITLSNPKAVADYLRLHLG 124
Query: 132 MKNANNFAYCFSI 144
+
Sbjct: 125 HEKIEVSTALLLN 137
>gi|262273497|ref|ZP_06051311.1| DNA repair protein RadC [Grimontia hollisae CIP 101886]
gi|262222475|gb|EEY73786.1| DNA repair protein RadC [Grimontia hollisae CIP 101886]
Length = 224
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 47/122 (38%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ L KG AL E+L + L + + +A+ LL+ F +L G+ A L
Sbjct: 11 RPREKLLAKGPEALTNAELLAIFLRTGVTGMNAIELARYLLEDFGSLRGLMLATLTQFSA 70
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+G +L+ V S+R L + + L + + F +
Sbjct: 71 RKGLGAAKYAQLQAVLELSKRHLGETLAREDALASPSHTANYLSLKLRDRQREAFLVLYL 130
Query: 144 IN 145
N
Sbjct: 131 DN 132
>gi|240948237|ref|ZP_04752623.1| DNA repair protein RadC [Actinobacillus minor NM305]
gi|240297276|gb|EER47817.1| DNA repair protein RadC [Actinobacillus minor NM305]
Length = 221
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G +L E+L + L I ++ +L F +L G+ APL ++
Sbjct: 7 PREKLLQQGVESLNDQELLAIFLRTGIKGTPVMELSANVLTEFGSLRGLLTAPLEEFCQV 66
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ ++R L + + ++ + F F
Sbjct: 67 RGLGQTQYIQLQATKEMTKRYLSQQMQANETINDPYVAIMYFQSELEHWEREVFMVLFLD 126
Query: 145 N 145
N
Sbjct: 127 N 127
>gi|152977701|ref|YP_001343330.1| DNA repair protein RadC [Actinobacillus succinogenes 130Z]
gi|171472902|sp|A6VK98|Y013_ACTSZ RecName: Full=UPF0758 protein Asuc_0013
gi|150839424|gb|ABR73395.1| DNA repair protein RadC [Actinobacillus succinogenes 130Z]
Length = 220
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L YE+L + L I +++A+L+ F +L G+ A +
Sbjct: 8 PREKLLKSGAETLENYELLAIFLRTGIKNCPVIQLSQAVLRYFGSLRGLISADQEQFCQF 67
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG ++L+ + ++R L + T + ++ F+ F
Sbjct: 68 KGIGITQYIQLQACTEMTKRYLAEELTFAHEFTNPLTVRLYLQTELEHYEREVFSVLFLD 127
Query: 145 N 145
N
Sbjct: 128 N 128
>gi|16762580|ref|NP_458197.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16767014|ref|NP_462629.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29144069|ref|NP_807411.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|62182222|ref|YP_218639.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|167549023|ref|ZP_02342782.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168235334|ref|ZP_02660392.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168241908|ref|ZP_02666840.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168260517|ref|ZP_02682490.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168464963|ref|ZP_02698855.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168818441|ref|ZP_02830441.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194447446|ref|YP_002047761.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194471766|ref|ZP_03077750.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194738096|ref|YP_002116664.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197251672|ref|YP_002148661.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197264351|ref|ZP_03164425.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|198244011|ref|YP_002217690.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200388196|ref|ZP_03214808.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205354669|ref|YP_002228470.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858966|ref|YP_002245617.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213161281|ref|ZP_03346991.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213582558|ref|ZP_03364384.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213615654|ref|ZP_03371480.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647926|ref|ZP_03377979.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213855129|ref|ZP_03383369.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|224585529|ref|YP_002639328.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238910236|ref|ZP_04654073.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289809998|ref|ZP_06540627.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289824121|ref|ZP_06543718.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|54039003|sp|P65961|YICR_SALTI RecName: Full=UPF0758 protein yicR
gi|54041784|sp|P65960|YICR_SALTY RecName: Full=UPF0758 protein yicR
gi|73913738|sp|Q57IA4|YICR_SALCH RecName: Full=UPF0758 protein yicR
gi|238689782|sp|B4TZY0|YICR_SALSV RecName: Full=UPF0758 protein yicR
gi|238689997|sp|B5EXE3|YICR_SALA4 RecName: Full=UPF0758 protein yicR
gi|238690228|sp|B4T9C3|YICR_SALHS RecName: Full=UPF0758 protein yicR
gi|238690333|sp|B5FM62|YICR_SALDC RecName: Full=UPF0758 protein yicR
gi|238690466|sp|B5R5G2|YICR_SALEP RecName: Full=UPF0758 protein yicR
gi|238690538|sp|B5RGE9|YICR_SALG2 RecName: Full=UPF0758 protein yicR
gi|254789657|sp|C0Q1X1|YICR_SALPC RecName: Full=UPF0758 protein yicR
gi|25322100|pir||AD0971 probable DNA repair protein radC [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16422297|gb|AAL22588.1| putative DNA repair protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16504885|emb|CAD03264.1| putative DNA repair protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139706|gb|AAO71271.1| putative DNA repair protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|62129855|gb|AAX67558.1| putative DNA repair protein, associated with replication forks
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|194405750|gb|ACF65969.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194458130|gb|EDX46969.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194713598|gb|ACF92819.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195632438|gb|EDX50922.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197215375|gb|ACH52772.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197242606|gb|EDY25226.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197291464|gb|EDY30816.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197938527|gb|ACH75860.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199605294|gb|EDZ03839.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205274450|emb|CAR39482.1| putative DNA repair protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205325640|gb|EDZ13479.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205338909|gb|EDZ25673.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205344387|gb|EDZ31151.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205350173|gb|EDZ36804.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206710769|emb|CAR35130.1| putative DNA repair protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224470057|gb|ACN47887.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|301160266|emb|CBW19789.1| putative DNA repair protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914755|dbj|BAJ38729.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320088149|emb|CBY97911.1| DNA repair protein radC homolog [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321226782|gb|EFX51832.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322612895|gb|EFY09847.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618960|gb|EFY15847.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625263|gb|EFY22090.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322630070|gb|EFY26843.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322634261|gb|EFY30996.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635838|gb|EFY32547.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643024|gb|EFY39601.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322645048|gb|EFY41579.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649852|gb|EFY46275.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322653059|gb|EFY49394.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322661122|gb|EFY57350.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662389|gb|EFY58602.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322667267|gb|EFY63433.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674356|gb|EFY70449.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322678436|gb|EFY74497.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322680942|gb|EFY76976.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322687122|gb|EFY83095.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322716710|gb|EFZ08281.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323132089|gb|ADX19519.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323195846|gb|EFZ81018.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323198237|gb|EFZ83343.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323200855|gb|EFZ85925.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323206609|gb|EFZ91567.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323210478|gb|EFZ95364.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216234|gb|EGA00962.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323220457|gb|EGA04911.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323225320|gb|EGA09554.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323228434|gb|EGA12565.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323234255|gb|EGA18343.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237240|gb|EGA21307.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323244759|gb|EGA28763.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323245866|gb|EGA29856.1| hypothetical protein SEEM9199_16688 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323250951|gb|EGA34827.1| hypothetical protein SEEM8282_21207 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323257301|gb|EGA41000.1| hypothetical protein SEEM8283_22649 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262225|gb|EGA45786.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264564|gb|EGA48068.1| hypothetical protein SEEM8285_13785 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323268854|gb|EGA52312.1| hypothetical protein SEEM8287_17174 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326629808|gb|EGE36151.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 221
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +L+ E+L L L P KD ++AK +L+ F +L G+ A + +
Sbjct: 9 PREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSADFAQFRGV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG +LK ++ ++R + + L + ++ + F F
Sbjct: 69 NGIGLAKFAQLKGIAELARRYYSVRMNEESALLSPEMTREFLQSQLTGEEREIFLVIFLD 128
>gi|255067544|ref|ZP_05319399.1| DNA repair protein RadC [Neisseria sicca ATCC 29256]
gi|255048165|gb|EET43629.1| DNA repair protein RadC [Neisseria sicca ATCC 29256]
Length = 226
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 44/128 (34%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L +G AL+ E+L ++L +A+ LL F +LG + A
Sbjct: 4 KQWPEGERPREKLLARGAGALSDAELLAILLRVGTRGMSAVDLARYLLNEFGSLGKLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L +G + +V +RIL + L+ + + H +
Sbjct: 64 DAKTLSAYKGMGLASFTQFAVVKEIGRRILGEDLQENITLSSPKAVADYLRLHLGHEKIE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSTALLLN 131
>gi|156936195|ref|YP_001440111.1| hypothetical protein ESA_04094 [Cronobacter sakazakii ATCC BAA-894]
gi|156534449|gb|ABU79275.1| hypothetical protein ESA_04094 [Cronobacter sakazakii ATCC BAA-894]
Length = 255
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ ++ G L+ E+L + L P D ++AK LL F +L G+ A + ++I
Sbjct: 43 PREKLMRYGAADLSDEELLAIFLRTGTPGMDVMTLAKRLLAHFGSLYGLLSADIRPFRDI 102
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +LK + ++R ++ + L +E + F F
Sbjct: 103 GGVGMAKYAQLKAIGELARRYYRSRPCEETALLSPTITRDFLESQLAEQEREVFLVIFLD 162
>gi|223041556|ref|ZP_03611757.1| DNA repair protein RadC-like protein [Actinobacillus minor 202]
gi|223017651|gb|EEF16061.1| DNA repair protein RadC-like protein [Actinobacillus minor 202]
Length = 221
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G +L E+L + L I ++ +L F +L G+ APL ++
Sbjct: 7 PREKLLQQGVESLNDQELLAIFLRTGIKGTPVMELSANVLTEFGSLRGLLTAPLEEFCQV 66
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ ++R L + + ++ + F F
Sbjct: 67 RGLGQTQYIQLQATKEMTKRYLSQQMQANETINDPYVAIMYFQSELEHWEREVFMVLFLD 126
Query: 145 N 145
N
Sbjct: 127 N 127
>gi|228993193|ref|ZP_04153114.1| DNA repair protein radC [Bacillus pseudomycoides DSM 12442]
gi|228999243|ref|ZP_04158823.1| DNA repair protein radC [Bacillus mycoides Rock3-17]
gi|229006790|ref|ZP_04164423.1| DNA repair protein radC [Bacillus mycoides Rock1-4]
gi|228754412|gb|EEM03824.1| DNA repair protein radC [Bacillus mycoides Rock1-4]
gi|228760440|gb|EEM09406.1| DNA repair protein radC [Bacillus mycoides Rock3-17]
gi|228766519|gb|EEM15161.1| DNA repair protein radC [Bacillus pseudomycoides DSM 12442]
Length = 225
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 50/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G ++L+ E+L ++L + ++A +L F L + A + +
Sbjct: 11 EQPRERLLVEGASSLSNRELLAVLLRTGSKEESVLTLADQILYHFDGLRMLKDATIEEMT 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKASQLIAAFELGRRMVRLEYQNRYSIRSPEDCASYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|170719373|ref|YP_001747061.1| DNA repair protein RadC [Pseudomonas putida W619]
gi|229485561|sp|B1J4M1|Y186_PSEPW RecName: Full=UPF0758 protein PputW619_0186
gi|169757376|gb|ACA70692.1| DNA repair protein RadC [Pseudomonas putida W619]
Length = 226
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 47/130 (36%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ R R++ +Q+G +L+ E+L + L + ++ +A+ LL +F L +
Sbjct: 2 KISEWPAEERPREKLMQRGVGSLSDAELLAVFLGSGVRGRNVVELARGLLVKFGGLRQLL 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A +G +L+ + +R L + L ++ +
Sbjct: 62 EADRDAFVGELGLGPVRYGQLQALLEIGRRNLATSIERDCALESPSAVRRYLKAMLRHEP 121
Query: 135 ANNFAYCFSI 144
+ F F
Sbjct: 122 SEVFGCLFLD 131
>gi|270265228|ref|ZP_06193490.1| DNA repair protein RadC [Serratia odorifera 4Rx13]
gi|270040862|gb|EFA13964.1| DNA repair protein RadC [Serratia odorifera 4Rx13]
Length = 228
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G AL+ E+L + L P +A+ LL +F +L + A +
Sbjct: 16 PREKLLRYGAAALSDAELLAIFLRTGFPGLHVMQLAEQLLGQFGSLYHLMSADHQVFCSH 75
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ +S + R ++ + + + + ++ + F F
Sbjct: 76 KGLGNSSYAQLQAISELAFRFFSSHLAQENAMLNPKITQHYLQSLLAHREREVFLVLFLD 135
Query: 145 N 145
N
Sbjct: 136 N 136
>gi|254448902|ref|ZP_05062357.1| DNA repair protein RadC [gamma proteobacterium HTCC5015]
gi|198261439|gb|EDY85729.1| DNA repair protein RadC [gamma proteobacterium HTCC5015]
Length = 224
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ LQ G AL+ E+L + K +A+ L F +L + GA H
Sbjct: 10 ERPREKCLQLGAAALSDAELLAIFFRVGTQGKSAVDLARESLHHFGSLRALLGAEEHQFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G+ ++L+ V ++R L + + LT ++ + FA +
Sbjct: 70 RAHGLGQAKFVQLQAVLEMARRHLLEDLQRGEALTSPDQASAYLKAKLRDYHHEVFACLW 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|204928480|ref|ZP_03219679.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204321913|gb|EDZ07111.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 221
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +L+ E+L L L P KD ++AK +L+ F +L G+ A + +
Sbjct: 9 PREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSADFAQFRGV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG +LK ++ ++R + + L + ++ + F F
Sbjct: 69 NGIGLAKFAQLKGIAELARRYYSVRMNEESALLSPEMTREFLQSQLTGEEREIFLVIFLD 128
>gi|269926735|ref|YP_003323358.1| DNA repair protein RadC [Thermobaculum terrenum ATCC BAA-798]
gi|269790395|gb|ACZ42536.1| DNA repair protein RadC [Thermobaculum terrenum ATCC BAA-798]
Length = 234
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 50/135 (37%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
MS L +R R+R G + L+ E+L +IL I ++ +A+ LL
Sbjct: 1 MSTDGYTSFTLKETPETDRPRERLKALGPSYLSDAELLAIILRVGIKGENVIDLARRLLA 60
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
+ + G+ + L +G+ A ++K +R LK ++ +T +
Sbjct: 61 QNQGITGLASIDFNSLASQRGVGEAKACQIKAALELGRRYLKEMPEQRRRITSPEDIADL 120
Query: 126 VERHYPMKNANNFAY 140
+ +
Sbjct: 121 LMLEMGHLEQEHLRV 135
>gi|300024876|ref|YP_003757487.1| DNA repair protein RadC [Hyphomicrobium denitrificans ATCC 51888]
gi|299526697|gb|ADJ25166.1| DNA repair protein RadC [Hyphomicrobium denitrificans ATCC 51888]
Length = 254
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 9 APSKDSHL--DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR 66
AP K D GH RLR+RF G +A+ YE+LE+ILFR PR DTK IAK LL R
Sbjct: 24 APLKTKKAVDDKAGHRGRLRERFTNGGADAVPDYELLEMILFRAFPRIDTKPIAKRLLAR 83
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
F + V AP L+EI +G R ELKL+ A++R+ + + L+ L +
Sbjct: 84 FGSFAEVVSAPPDRLKEIEGVGDRAVQELKLIKTAAERLTRGEIKSRPALSSWSGVLDYL 143
Query: 127 ERHYPMKNANNFAYCFSI 144
++ +F F
Sbjct: 144 RLAQGFEDREHFRILFLD 161
>gi|238794408|ref|ZP_04638019.1| DNA repair protein radC [Yersinia intermedia ATCC 29909]
gi|238726309|gb|EEQ17852.1| DNA repair protein radC [Yersinia intermedia ATCC 29909]
Length = 222
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L E+L + L IP +A+ L++ F +L G+ A L
Sbjct: 10 PREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMQMAEYLIEEFGSLHGLMSADYQTLCAQ 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +++ ++ + R ++ + L + ++ + F F
Sbjct: 70 KGIGSSKYSQIQAIAELACRCFSSHLMRESVLQNPEITQKFLQNILSHREREIFLVMFLD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|293611113|ref|ZP_06693412.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292826765|gb|EFF85131.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 235
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
++ + R R+R LQ+G +L+ E+L + L + +++ L++ F L
Sbjct: 2 NTSIKNWPEQERPRERLLQQGPQSLSDAELLAIFLRSGSRQYSAVELSRLLIQHFGNLNA 61
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWS-IKKFLTPGQPCLISVERHYP 131
VF A L + N IG +L V +R L ++ L L +
Sbjct: 62 VFDASFSELTQFNGIGATKYSQLLAVKELGRRYLDHHFQTNNLSLHSSDLVLDYLRYELK 121
Query: 132 MKNANNFAYCFSI 144
+ FA
Sbjct: 122 GEKQEVFAVLCLD 134
>gi|127514409|ref|YP_001095606.1| DNA repair protein RadC [Shewanella loihica PV-4]
gi|126639704|gb|ABO25347.1| DNA repair protein RadC [Shewanella loihica PV-4]
Length = 233
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L+ E+L ++L + + S+A+ +L F L +F A L L +I
Sbjct: 20 PREKLLRSGVAQLSDAELLAVLLRNGLKGQSAVSLARVMLTHFGGLRALFSASLSELCDI 79
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +L+ S+RI + N K L+ + R + FA
Sbjct: 80 QGIGPVKYAQLQAAIELSKRIAQENLQRGKILSDPDLTRDYLMRQLADRAYEVFAILLLD 139
>gi|171855257|sp|A3QIP9|Y3481_SHELP RecName: Full=UPF0758 protein Shew_3481
Length = 225
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L+ E+L ++L + + S+A+ +L F L +F A L L +I
Sbjct: 12 PREKLLRSGVAQLSDAELLAVLLRNGLKGQSAVSLARVMLTHFGGLRALFSASLSELCDI 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +L+ S+RI + N K L+ + R + FA
Sbjct: 72 QGIGPVKYAQLQAAIELSKRIAQENLQRGKILSDPDLTRDYLMRQLADRAYEVFAILLLD 131
>gi|78486256|ref|YP_392181.1| DNA repair protein RadC [Thiomicrospira crunogena XCL-2]
gi|78364542|gb|ABB42507.1| DNA repair protein radC homolog [Thiomicrospira crunogena XCL-2]
Length = 237
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 51/122 (41%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ L+ G L+ E+L + L + K +A+ LL F +L + A
Sbjct: 22 DRPREKLLKFGAPHLSDAELLAIFLRVGVKGKSAVELAQDLLDHFGSLERLLNADEAAFC 81
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
E +G+ ++LK V S+R ++ + LT + ++ H ++ F
Sbjct: 82 EAKGLGQAKYVQLKAVLEMSRRHFESGLKKGEALTQPEKVARLLQHHIGHQSREIFGLVL 141
Query: 143 SI 144
Sbjct: 142 LD 143
>gi|293393619|ref|ZP_06637929.1| DNA repair protein RadC [Serratia odorifera DSM 4582]
gi|291423954|gb|EFE97173.1| DNA repair protein RadC [Serratia odorifera DSM 4582]
Length = 228
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G AL+ E+L + L +P A+ +L +F +L + A
Sbjct: 16 PREKLLRDGAAALSDVELLAIFLRTGLPGVHVMQRAEQMLLQFGSLHQLIAADYAQFCSQ 75
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ +S + R + + L + ++ + F F
Sbjct: 76 KGVGDATYSQLQAISELAFRCFACQLAQENALLNPKVTRHYLQSLLAHREREVFLVLFLD 135
Query: 145 N 145
N
Sbjct: 136 N 136
>gi|145589913|ref|YP_001156510.1| DNA repair protein RadC [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145048319|gb|ABP34946.1| DNA replication and repair protein RadC [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 239
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 42/126 (33%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+ R++ G AL E+L + L + K ++AK LL F +L + +
Sbjct: 17 WPKSEQPREKLRIHGARALTDAELLAIFLRVGVKGKSAVTLAKDLLHYFGSLPRLLASTP 76
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
I+ +G +++ +R L+ + + ++ F
Sbjct: 77 EEFIRIHGMGLSKWSQIQAAYELVKRSLEEGLAQNSIFSSPGHVKEYLQSKIGRLPHEVF 136
Query: 139 AYCFSI 144
+
Sbjct: 137 LCLYLD 142
>gi|68171315|ref|ZP_00544714.1| DNA repair protein RadC [Ehrlichia chaffeensis str. Sapulpa]
gi|88658430|ref|YP_507183.1| DNA repair protein RadC [Ehrlichia chaffeensis str. Arkansas]
gi|67999266|gb|EAM85917.1| DNA repair protein RadC [Ehrlichia chaffeensis str. Sapulpa]
gi|88599887|gb|ABD45356.1| DNA repair protein RadC [Ehrlichia chaffeensis str. Arkansas]
Length = 230
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 60/134 (44%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ IGH RLR + L KG L YEILELIL PRKD K IAK L++ F T
Sbjct: 4 KDERQKQQIGHRKRLRQKLLSKGNKGLLDYEILELILCSAHPRKDVKPIAKKLIEHFGTF 63
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
VF A L++I+ IG+ + + A RIL+ N + Q + +
Sbjct: 64 AKVFFADYSQLKQISGIGEVAISAIFCIREALNRILRENIDKGTIINQWQKLIEYLRIKI 123
Query: 131 PMKNANNFAYCFSI 144
+ NF +
Sbjct: 124 GNGSVENFHILYLN 137
>gi|331269058|ref|YP_004395550.1| DNA repair protein [Clostridium botulinum BKT015925]
gi|329125608|gb|AEB75553.1| DNA repair protein [Clostridium botulinum BKT015925]
Length = 221
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E++ +IL ++ +++ +LK+ L G+ +
Sbjct: 7 ERPRERLLKYGAQSLSNSELIAIILRTGSSNENVLNLSSRILKQCGGLNGLLTLMPEDMM 66
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ IGK A ++ + ++R + + V +
Sbjct: 67 TLKGIGKAKATQIIAIGELAKRFKAYKSGDIYIIKSPRDVADMVMDEMRYFKEEHLRVIM 126
Query: 143 SI--NII 147
NI+
Sbjct: 127 LNTKNIV 133
>gi|304399017|ref|ZP_07380886.1| DNA repair protein RadC [Pantoea sp. aB]
gi|304353477|gb|EFM17855.1| DNA repair protein RadC [Pantoea sp. aB]
Length = 218
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ + G N+L E+L + L P ++ +A +L+ F +L + + E+
Sbjct: 6 PREKLQKLGANSLTDTELLAIFLRTGSPGQNVLELAGEMLEGFGSLYLLMTSDKAAFGEV 65
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +L V+ ++R + + + Q ++ + F F
Sbjct: 66 KGIGDAKLAQLHAVAELAKRFFASKLVRESAMENPQITRQYLQSLLAHQEREIFMALFLD 125
Query: 145 N 145
N
Sbjct: 126 N 126
>gi|149371609|ref|ZP_01891025.1| putative DNA repair protein [unidentified eubacterium SCB49]
gi|149355236|gb|EDM43796.1| putative DNA repair protein [unidentified eubacterium SCB49]
Length = 232
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 50/139 (35%), Gaps = 1/139 (0%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR- 66
K P + +R R++ + + + AL E++ +++ + ++++ +L
Sbjct: 2 KEPKATFSIKDWNEDDRPREKLMAQSKAALTDAELVAILIGSGNREESAVALSQRILASA 61
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
L + + L + IG+ A+ + +R ++ K +T Q +
Sbjct: 62 NNNLDTLGKFSIKELMKFKGIGEAKAISIVAAMELGRRRKESGAVQLKKITSSQSVFQVM 121
Query: 127 ERHYPMKNANNFAYCFSIN 145
+ F + N
Sbjct: 122 QPVLGDLPHEEFWVIYLNN 140
>gi|285017189|ref|YP_003374900.1| DNA repair protein radc [Xanthomonas albilineans GPE PC73]
gi|283472407|emb|CBA14912.1| probable dna repair protein radc [Xanthomonas albilineans]
Length = 224
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ L +G AL+ E+L + L + +D ++ LL++ L + P + L
Sbjct: 9 DERPREKLLTRGPQALSDAELLAIFLGSGLRGRDAVQTSRDLLQQHGPLRTLLDRPPNEL 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +G L QR L A L + + FA
Sbjct: 69 LRLPGLGPARVCRLSAAMELGQRHLAAELQRGDTLNDPSVVGRYFSQRLRARPYEVFAVL 128
Query: 142 FSI 144
F
Sbjct: 129 FLD 131
>gi|85705707|ref|ZP_01036804.1| DNA repair protein RadC [Roseovarius sp. 217]
gi|85669697|gb|EAQ24561.1| DNA repair protein RadC [Roseovarius sp. 217]
Length = 251
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 3 DFRMSKAPSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
D + AP K YI H RLR RFL G A+ YE+LEL+LFR IPR+D K +A
Sbjct: 18 DAAEATAPEKL--PSYIRDHRTRLRSRFLHGGAAAMPDYELLELVLFRAIPRRDVKPLAH 75
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
ALL +F GV APL L ++ IG+ VA+ELK+V A+ R+ +A ++ L+
Sbjct: 76 ALLSQFGDFNGVISAPLERLTALSGIGEAVAVELKIVEAAAHRLARARVLRRQVLSSWDA 135
Query: 122 CLISVERHYPMKNANNFAYCFSI--NII 147
L F + NI+
Sbjct: 136 LLDYCHTTMAHAEIEQFRVFYLDRKNIL 163
>gi|157693205|ref|YP_001487667.1| DNA repair protein RadC [Bacillus pumilus SAFR-032]
gi|157681963|gb|ABV63107.1| DNA repair protein RadC [Bacillus pumilus SAFR-032]
Length = 232
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 51/128 (39%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ H + R+RF++ G ++L+ +E++ ++L ++ I+ LL+ F L V A
Sbjct: 12 KHFPHDEKPRERFIKYGPSSLSNHELVAILLRTGTKKESVLQISARLLQTFGGLRSVREA 71
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ + +I +GK A+ L R+ + + + V
Sbjct: 72 TIEEMSKIRGVGKAKAISLLAALELGTRLHHQTTDNRYVIRTPEDGANFVMEDMRFLTQE 131
Query: 137 NFAYCFSI 144
NF +
Sbjct: 132 NFVCLYLN 139
>gi|264679954|ref|YP_003279863.1| DNA repair protein RadC [Comamonas testosteroni CNB-2]
gi|262210469|gb|ACY34567.1| DNA repair protein RadC [Comamonas testosteroni CNB-2]
Length = 230
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 6/126 (4%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL------KRFATLGGVFGAPL 78
R++ Q+G AL+ E+L +IL I K +A+ LL + L + A
Sbjct: 12 PREKLAQRGAAALSDAELLAVILRTGIAGKTVLQMAQELLELPGDGQGAGGLARLLAADY 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L + +G EL V ++R ++ + + ++ H + F
Sbjct: 72 QALTAVKGLGPAKRAELMAVLELARRATAQQLREREVFSSPEAVKHYLQLHLAARPHEVF 131
Query: 139 AYCFSI 144
A F
Sbjct: 132 AVLFLD 137
>gi|326625474|gb|EGE31819.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 221
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +L+ E+L L L P KD ++AK +L+ F +L G+ A + +
Sbjct: 9 PREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSADFAQFRGV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG +LK ++ ++ + + L + ++ + F F
Sbjct: 69 NGIGLAKFAQLKGIAELARCYYSVRMNEESALLSPEMTREFLQSQLTGEEREIFLVIFLD 128
>gi|68249540|ref|YP_248652.1| DNA repair protein RadC [Haemophilus influenzae 86-028NP]
gi|68057739|gb|AAX87992.1| DNA repair protein RadC homolog [Haemophilus influenzae 86-028NP]
Length = 234
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + A +
Sbjct: 22 PREKLLAFGAKALSDYELLAIFLRTGIKDCPVMSLSKNVLTHFGSLHALLSADKKAFCSV 81
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + F F
Sbjct: 82 KGLGITQFIQLQAITEMTKRYLKQEMLSTPIINDLETVKLFLLTELQHEEREVFMVLFLD 141
Query: 145 N 145
N
Sbjct: 142 N 142
>gi|319897558|ref|YP_004135755.1| DNA repair protein radc homolog [Haemophilus influenzae F3031]
gi|88930441|sp|Q4QLV5|Y1125_HAEI8 RecName: Full=UPF0758 protein NTHI1125
gi|317433064|emb|CBY81438.1| DNA repair protein RadC homolog [Haemophilus influenzae F3031]
Length = 221
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + A +
Sbjct: 9 PREKLLAFGAKALSDYELLAIFLRTGIKDCPVMSLSKNVLTHFGSLHALLSADKKAFCSV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++ ++R LK + + + + + F F
Sbjct: 69 KGLGITQFIQLQAITEMTKRYLKQEMLSTPIINDLETVKLFLLTELQHEEREVFMVLFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|161505736|ref|YP_001572848.1| DNA repair protein RadC [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|189029401|sp|A9MKN7|YICR_SALAR RecName: Full=UPF0758 protein yicR
gi|160867083|gb|ABX23706.1| hypothetical protein SARI_03912 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 221
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +L+ E+L L L P KD ++AK +L+RF +L G+ A + I
Sbjct: 9 PREKMLRSGIASLSDVELLALFLRTGTPGKDVITLAKEMLQRFGSLYGLLSADFAQFRGI 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG +LK ++ ++R + + L + L ++ + F F
Sbjct: 69 NGIGLAKFAQLKGIAELARRYYSVRMNEEDALLSPEMTLEFLQSQLTGEEREIFLVIFLD 128
>gi|325123441|gb|ADY82964.1| DNA repair protein, associated with replication forks
[Acinetobacter calcoaceticus PHEA-2]
Length = 239
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
++ + R R+R LQ+G +L+ E+L + L + +++ L++ F L
Sbjct: 6 NTSIKNWPEQERPRERLLQQGPQSLSDAELLAIFLRSGSRQYSAVELSRLLIQHFGNLNA 65
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWS-IKKFLTPGQPCLISVERHYP 131
VF A L + N IG +L V +R L ++ L L +
Sbjct: 66 VFDASFSELTQFNGIGATKYSQLLAVKELGRRYLDHHFQTNNLSLHSSDLVLDYLRYELK 125
Query: 132 MKNANNFAYCFSI 144
+ FA
Sbjct: 126 GEKQEVFAVLCLD 138
>gi|161616810|ref|YP_001590774.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|161366174|gb|ABX69942.1| hypothetical protein SPAB_04629 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 279
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +L+ E+L L L P KD ++AK +L+ F +L G+ A + +
Sbjct: 67 PREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSADFAQFRGV 126
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG +LK ++ ++R + + L + ++ + F F
Sbjct: 127 NGIGLAKFAQLKGIAELARRYYSVRMNEESALLSPEMTREFLQSQLTGEEREIFLVIFLD 186
>gi|56459351|ref|YP_154632.1| hypothetical protein IL0240 [Idiomarina loihiensis L2TR]
gi|73913736|sp|Q5QZB4|Y240_IDILO RecName: Full=UPF0758 protein IL0240
gi|56178361|gb|AAV81083.1| RadC [Idiomarina loihiensis L2TR]
Length = 224
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ +G L+ E+L ++L +D S A+ LL F +G + A L
Sbjct: 10 ERPREKLQTQGAEYLSDAELLAILLGSGSGGQDVVSFARRLLSDFGGVGALLTATPEQLL 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
N IG +L++V S+R LK T + + FA
Sbjct: 70 ACNGIGPARVNQLRVVLELSRRYLKWQLERSDGFTEPTMVKDYLTSQLRHQGREVFAILL 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|205374328|ref|ZP_03227126.1| DNA repair protein RadC [Bacillus coahuilensis m4-4]
Length = 190
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H+R R+R L G +++ +E+L ++L + +A +LL F L + A L L
Sbjct: 13 HDRPRERMLSAGPQSVSNHELLAILLRSGSRDESVIHLANSLLHTFDGLRLLKDASLEEL 72
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ IG A++L +RI + + + + V + +F
Sbjct: 73 TSMKGIGPAKAVQLMAAVELGKRIHDLTYEDRYVIRSPEDGANYVMHEMRFLSQEHFVCL 132
Query: 142 FSI 144
+
Sbjct: 133 YLN 135
>gi|172046616|sp|Q31EB6|Y1917_THICR RecName: Full=UPF0758 protein Tcr_1917
Length = 225
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 51/122 (41%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ L+ G L+ E+L + L + K +A+ LL F +L + A
Sbjct: 10 DRPREKLLKFGAPHLSDAELLAIFLRVGVKGKSAVELAQDLLDHFGSLERLLNADEAAFC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
E +G+ ++LK V S+R ++ + LT + ++ H ++ F
Sbjct: 70 EAKGLGQAKYVQLKAVLEMSRRHFESGLKKGEALTQPEKVARLLQHHIGHQSREIFGLVL 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|323489982|ref|ZP_08095203.1| DNA repair protein radC-like protein [Planococcus donghaensis
MPA1U2]
gi|323396278|gb|EGA89103.1| DNA repair protein radC-like protein [Planococcus donghaensis
MPA1U2]
Length = 224
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R+R + +G +AL+ E++ ++L ++ +A +L F + + A + +
Sbjct: 10 DRPRERLINQGASALSNQELIAILLRTGSRQESVLHLANRVLTHFEHIQELKNATIEEMV 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
IN IG+ A++L +R+ K + + + +F F
Sbjct: 70 AINGIGQAKAVQLLAAVELGRRLSSKQTDTKFTIRSPKDAASYLMADMTSLKQEHFVVLF 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|172046060|sp|A8FFU0|Y2444_BACP2 RecName: Full=UPF0758 protein BPUM_2444
Length = 224
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 51/128 (39%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ H + R+RF++ G ++L+ +E++ ++L ++ I+ LL+ F L V A
Sbjct: 4 KHFPHDEKPRERFIKYGPSSLSNHELVAILLRTGTKKESVLQISARLLQTFGGLRSVREA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ + +I +GK A+ L R+ + + + V
Sbjct: 64 TIEEMSKIRGVGKAKAISLLAALELGTRLHHQTTDNRYVIRTPEDGANFVMEDMRFLTQE 123
Query: 137 NFAYCFSI 144
NF +
Sbjct: 124 NFVCLYLN 131
>gi|267995990|gb|ACY90875.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
Length = 279
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +L+ E+L L L P KD ++AK +L+ F +L G+ A + +
Sbjct: 67 PREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSADFAQFRGV 126
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG +LK ++ ++R + + L + ++ + F F
Sbjct: 127 NGIGLAKFAQLKGIAELARRYYSVRMNEESALLSPEMTREFLQSQLTGEEREIFLVIFLD 186
>gi|126642941|ref|YP_001085925.1| DNA repair protein [Acinetobacter baumannii ATCC 17978]
gi|169794701|ref|YP_001712494.1| DNA repair protein, associated with replication forks
[Acinetobacter baumannii AYE]
gi|169147628|emb|CAM85491.1| DNA repair protein, associated with replication forks
[Acinetobacter baumannii AYE]
Length = 250
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
++ + R R+R LQ+G +L+ E+L + L + +A+ L+++F +L
Sbjct: 17 NTSIKNWPEQERPRERLLQQGPQSLSDSELLAIFLRSGSRQHSAVELARLLIQQFGSLNA 76
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYP 131
VF A + L + N IG +L V +R L ++S + L L +
Sbjct: 77 VFDASYNELAQFNGIGATKYSQLLAVKELGRRYLDYHFSQTELSLHSSHLVLDYLRYELK 136
Query: 132 MKNANNFAYCFSI 144
+ FA
Sbjct: 137 GEKQEVFAVLCLD 149
>gi|113868987|ref|YP_727476.1| DNA repair protein RadC [Ralstonia eutropha H16]
gi|123133661|sp|Q0K7B3|Y3033_RALEH RecName: Full=UPF0758 protein H16_A3033
gi|113527763|emb|CAJ94108.1| DNA repair protein [Ralstonia eutropha H16]
Length = 228
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ ++ G AL+ E+L ++L K +A+ LL RF +L +F A L
Sbjct: 10 ERPREKLMESGAAALSDAELLAILLRVGAAGKSAVDLARELLHRFGSLTALFAAEGRALT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G+ +L+ + ++R L + + + F F
Sbjct: 70 SVRGMGETKYAQLQAIPELARRALAESLRLPTGFDGPAAVRNYLRLTLAPLPHEVFLCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|229087017|ref|ZP_04219171.1| DNA repair protein radC [Bacillus cereus Rock3-44]
gi|228696280|gb|EEL49111.1| DNA repair protein radC [Bacillus cereus Rock3-44]
Length = 225
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G + L+ E+L ++L + ++A +L F L + A + +
Sbjct: 11 EQPRERLLVEGASNLSNRELLAVLLRTGSKEESVLTLADRILYHFDGLRMLKDATIEEMT 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKASQLISAFELGRRMVRLEYQNRYSIRSPEDCARYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|262377394|ref|ZP_06070617.1| DNA repair protein [Acinetobacter lwoffii SH145]
gi|262307624|gb|EEY88764.1| DNA repair protein [Acinetobacter lwoffii SH145]
Length = 232
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 1/129 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R+R +Q G +L+ E+L + L + +A+ L++ F L + A
Sbjct: 5 KNWPEQERPRERLIQYGAESLSDAELLAIFLRSGSQQHSAVDLARLLIQHFGHLTALLDA 64
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNA 135
PL + + + +G +L V +R + + LT + + +
Sbjct: 65 PLQEVSQFHGMGISKYTQLMAVKELGRRYIAEHLKQDALELTNSKRLRDYLRFELLGETQ 124
Query: 136 NNFAYCFSI 144
FA
Sbjct: 125 EVFAVLCLD 133
>gi|86747826|ref|YP_484322.1| DNA repair protein RadC [Rhodopseudomonas palustris HaA2]
gi|123004659|sp|Q2J299|Y700_RHOP2 RecName: Full=UPF0758 protein RPB_0700
gi|86570854|gb|ABD05411.1| DNA repair protein RadC [Rhodopseudomonas palustris HaA2]
Length = 250
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 69/143 (48%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+ P Y GH RLR+RF + G AL+ YE+LEL+LFR +PR+D K +AK
Sbjct: 15 DSSERLDPPGFAEAPHYHGHRERLRERFREAGAAALSDYELLELVLFRALPRRDVKPLAK 74
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
AL+ RF + AP L+E++ +G+ E+KLV+ A+ R+ K + L+
Sbjct: 75 ALIARFGSFAETMQAPEPRLREVSGLGEAAITEIKLVAAAAARVTKGQVKSRTVLSSWSA 134
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 135 VIDYCRTTMAFADREQFRILFLD 157
>gi|154686939|ref|YP_001422100.1| DNA repair protein RadC [Bacillus amyloliquefaciens FZB42]
gi|166218774|sp|A7Z793|Y2509_BACA2 RecName: Full=UPF0758 protein RBAM_025090
gi|154352790|gb|ABS74869.1| RadC [Bacillus amyloliquefaciens FZB42]
Length = 231
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 45/125 (36%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
+ R+R L G L+ E+L ++L + ++A LL+ F L + GA
Sbjct: 14 PEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQ 73
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L I IG A+++ RI K + + + V + +F
Sbjct: 74 ELSSIPGIGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFV 133
Query: 140 YCFSI 144
+
Sbjct: 134 CLYLN 138
>gi|213157928|ref|YP_002320726.1| DNA repair protein RadC [Acinetobacter baumannii AB0057]
gi|215482288|ref|YP_002324470.1| DNA repair protein radC [Acinetobacter baumannii AB307-0294]
gi|294839343|ref|ZP_06784026.1| DNA repair protein RadC [Acinetobacter sp. 6013113]
gi|294857023|ref|ZP_06794792.1| DNA repair protein RadC [Acinetobacter sp. 6013150]
gi|301347242|ref|ZP_07227983.1| DNA repair protein RadC [Acinetobacter baumannii AB056]
gi|301511792|ref|ZP_07237029.1| DNA repair protein RadC [Acinetobacter baumannii AB058]
gi|301595294|ref|ZP_07240302.1| DNA repair protein RadC [Acinetobacter baumannii AB059]
gi|172044077|sp|A3M8S9|Y2918_ACIBT RecName: Full=UPF0758 protein A1S_2918
gi|226736613|sp|B7GWK9|Y545_ACIB3 RecName: Full=UPF0758 protein ABBFA_000545
gi|226736614|sp|B7I981|Y3420_ACIB5 RecName: Full=UPF0758 protein AB57_3420
gi|193078350|gb|ABO13323.2| DNA repair protein [Acinetobacter baumannii ATCC 17978]
gi|213057088|gb|ACJ41990.1| DNA repair protein RadC [Acinetobacter baumannii AB0057]
gi|213987913|gb|ACJ58212.1| DNA repair protein radC [Acinetobacter baumannii AB307-0294]
Length = 235
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
++ + R R+R LQ+G +L+ E+L + L + +A+ L+++F +L
Sbjct: 2 NTSIKNWPEQERPRERLLQQGPQSLSDSELLAIFLRSGSRQHSAVELARLLIQQFGSLNA 61
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYP 131
VF A + L + N IG +L V +R L ++S + L L +
Sbjct: 62 VFDASYNELAQFNGIGATKYSQLLAVKELGRRYLDYHFSQTELSLHSSHLVLDYLRYELK 121
Query: 132 MKNANNFAYCFSI 144
+ FA
Sbjct: 122 GEKQEVFAVLCLD 134
>gi|123440463|ref|YP_001004457.1| DNA repair protein RadC [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|166218800|sp|A1JHX2|Y063_YERE8 RecName: Full=UPF0758 protein YE0063
gi|122087424|emb|CAL10205.1| putative DNA repair protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 222
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L E+L + L IP +A+ L++ F +L G+ A L
Sbjct: 10 PREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMQMAEYLIEEFGSLYGLISADYQALCAQ 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +++ ++ + R ++ + L + ++ + F F
Sbjct: 70 KGIGVSKYSQIQAIAELAGRCFSSHLMQESVLQNPEITQKFLQNILSHREREIFLVMFLD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|261341753|ref|ZP_05969611.1| hypothetical protein ENTCAN_08232 [Enterobacter cancerogenus ATCC
35316]
gi|288316121|gb|EFC55059.1| DNA repair protein RadC [Enterobacter cancerogenus ATCC 35316]
Length = 221
Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +L E+L L L K +A+ L+ F +L G+ A + +E+
Sbjct: 9 PREKMLRYGITSLTDAELLALFLRTGTQGKSVYVLARELIHHFGSLYGLLTADMAAFKEV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +L+ ++ ++R + L + ++ F F
Sbjct: 69 DGIGVAKFAQLRGIAELARRFYIVRMQEEDPLLTPEMTREFLQSQLADAEREIFMAIFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|15615594|ref|NP_243898.1| DNA repair protein RadC [Bacillus halodurans C-125]
gi|13431811|sp|Q9K8H4|Y3032_BACHD RecName: Full=UPF0758 protein BH3032
gi|10175654|dbj|BAB06751.1| DNA repair protein [Bacillus halodurans C-125]
Length = 232
Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 48/123 (39%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R+R L +G +AL+ EI+ ++L + +A+ +L F L + A + L
Sbjct: 14 RERPRERLLHEGAHALSNQEIVAIMLRTGTKNESVLQLAQHVLCHFDGLRLLREATVEEL 73
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I+ IG+ A+E +RI + + + V + NF
Sbjct: 74 TSIHGIGEAKAIEFCAAIELGRRIHTMQEMDRYVIRTPEDVSRFVMEEMRFLSQENFVCL 133
Query: 142 FSI 144
+
Sbjct: 134 YLN 136
>gi|238020847|ref|ZP_04601273.1| hypothetical protein GCWU000324_00742 [Kingella oralis ATCC 51147]
gi|237867827|gb|EEP68833.1| hypothetical protein GCWU000324_00742 [Kingella oralis ATCC 51147]
Length = 230
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L++G +AL+ E+L ++L ++++LL + LGGV A L
Sbjct: 10 ERPREKLLERGASALSDAELLAILLRVGTQGMSAVDLSRSLLDAYGGLGGVMHASAAELG 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G + V +R+L L Q + + F
Sbjct: 70 KHKGMGLAAYAQFATVLEIGRRVLGEELRQASLLNTPQAVGDYLRLRIGHERVEISFALF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|326391442|ref|ZP_08212978.1| DNA repair protein RadC [Thermoanaerobacter ethanolicus JW 200]
gi|325992521|gb|EGD50977.1| DNA repair protein RadC [Thermoanaerobacter ethanolicus JW 200]
Length = 226
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 51/128 (39%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ + R R+R ++ G L+ E++ +I+ R+ ++A+ L+ L + +
Sbjct: 3 KDLPYEERPRERLIKHGAQVLSNAELIAIIIGTGSKRESAITLAQRLIMEDRGLKFIVDS 62
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L I IG A++LK +R++ + S +T + + +
Sbjct: 63 SVEKLASIKGIGVAKAVKLKAAVELGRRMMLSTGSDSFTITSPEDVINLMMDEMRYLTKE 122
Query: 137 NFAYCFSI 144
+F
Sbjct: 123 HFKVIMLN 130
>gi|294670872|ref|ZP_06735728.1| hypothetical protein NEIELOOT_02576 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307359|gb|EFE48602.1| hypothetical protein NEIELOOT_02576 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 224
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 43/128 (33%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ R R++ G AL+ E+L ++L I +A+ LL F +LG + A
Sbjct: 4 KHWPEGERPREKLSALGAAALSDAELLAILLRTGIKGMSAVDLARYLLNEFGSLGRLMNA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
P L +G+ + +V +R+L + + + +
Sbjct: 64 PERELVRHKGMGQASFTQFAVVREIGRRVLAEELQEGALFDSPKAAANFLRLYLGHERVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSLVLLLN 131
>gi|309378585|emb|CBX22763.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 225
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 45/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L ++L +A+ LL+ F +LG + A
Sbjct: 4 KQWPEGERPREKLLERGAEALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +G + +V +RIL L+ + H +
Sbjct: 64 EVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQEGIVLSDPDTVADYLRFHLGQEKVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|212635015|ref|YP_002311540.1| DNA repair protein RadC [Shewanella piezotolerans WP3]
gi|226736630|sp|B8CM29|Y2203_SHEPW RecName: Full=UPF0758 protein swp_2203
gi|212556499|gb|ACJ28953.1| DNA repair protein RadC [Shewanella piezotolerans WP3]
Length = 225
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 44/120 (36%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G L+ E+L ++L + +A+ ++ F L + A + +
Sbjct: 12 PREKLLLDGAEQLSDAELLAVLLRVGLKGLSAVELARMMITEFGGLRSLLTASQAQVCRL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +L+ +RI K N K L+ + R + FA
Sbjct: 72 DGIGPVKFAQLQAAVEIGKRISKENLKRGKILSDPDLTRDYLMRQLGDRAYEVFAILLLD 131
>gi|73542417|ref|YP_296937.1| DNA repair protein RadC [Ralstonia eutropha JMP134]
gi|123624203|sp|Q46XP0|Y2732_RALEJ RecName: Full=UPF0758 protein Reut_A2732
gi|72119830|gb|AAZ62093.1| DNA repair protein RadC [Ralstonia eutropha JMP134]
Length = 228
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ + G AL+ E+L + L K +A+ L+ RF +L +F A +
Sbjct: 10 ERPREKLQECGAAALSDAELLAVFLRVGATGKSAVELARDLMVRFGSLTRLFTADARAVL 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G+ +L+ V ++R+L + + L + F F
Sbjct: 70 GIRGMGEAKYTQLQAVPELARRMLAESLELPSGLDSPAAVRSYLRLTLAPLAQEVFVCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|300778380|ref|ZP_07088238.1| DNA repair protein RadC [Chryseobacterium gleum ATCC 35910]
gi|300503890|gb|EFK35030.1| DNA repair protein RadC [Chryseobacterium gleum ATCC 35910]
Length = 225
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 1/130 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGVFG 75
++ +R R++FLQKG+++L+ E+L +I+ ++ +A+ +L + +
Sbjct: 4 KFLAEDDRPREKFLQKGKSSLSDSELLAIIMGSGNKDENAVELARKILNSVNNSWHQLSL 63
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L + IG+ A+ + +R K + +
Sbjct: 64 LSVKDLMKFKGIGETKAISIISALEIGKRRAVQEIPEKTIIGNSHDAYAVLRNQLSDLRT 123
Query: 136 NNFAYCFSIN 145
F F N
Sbjct: 124 EEFWAIFLNN 133
>gi|307266691|ref|ZP_07548219.1| DNA repair protein RadC [Thermoanaerobacter wiegelii Rt8.B1]
gi|306918293|gb|EFN48539.1| DNA repair protein RadC [Thermoanaerobacter wiegelii Rt8.B1]
Length = 226
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 51/128 (39%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ + R R+R ++ G L+ E++ +I+ R+ ++A+ L+ L + +
Sbjct: 3 KDLPYEERPRERLIKHGAQVLSNAELIAIIIGTGSKRESAITLAQRLIMEDRGLKFIVDS 62
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L I IG A++LK +R++ + S +T + + +
Sbjct: 63 SVEKLASIKGIGVAKAVKLKAAVELGRRMMLSTGSDSFTITSPEDVINLMMDEMRYLTKE 122
Query: 137 NFAYCFSI 144
+F
Sbjct: 123 HFKVIMLN 130
>gi|239501672|ref|ZP_04660982.1| DNA repair protein, associated with replication forks
[Acinetobacter baumannii AB900]
Length = 235
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
++ + R R+R LQ+G +L+ E+L + L + +A+ L+++F +L
Sbjct: 2 NTSIKNWPEQERPRERLLQQGPQSLSDSELLAIFLRSGSRQHSAVELARLLIQQFGSLNA 61
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYP 131
VF A + L + N IG +L V +R L ++S + L L +
Sbjct: 62 VFDASYNELAQFNGIGATKYSQLLAVKELGRRYLDYHFSQTELSLHSSHLVLDYLRYELK 121
Query: 132 MKNANNFAYCFSI 144
+ FA
Sbjct: 122 GEKQEVFAVLCLD 134
>gi|312795310|ref|YP_004028232.1| DNA repair protein radC [Burkholderia rhizoxinica HKI 454]
gi|312167085|emb|CBW74088.1| DNA repair protein radC [Burkholderia rhizoxinica HKI 454]
Length = 239
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 48/126 (38%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
H R R+R G +AL+ E++ L L +D + + LL RF +L G+F A
Sbjct: 21 WPEHERPRERLFVAGASALSDAELVALYLGSGSRGRDAVGLGQQLLARFGSLRGLFSASH 80
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L ++ IG L+ + ++R L + L + + + F
Sbjct: 81 DELIQVTGIGPAKIARLQAATEIARRALGEQSREQATLDHPEIVEDYLRLMIGTRPYEVF 140
Query: 139 AYCFSI 144
F
Sbjct: 141 VCLFLD 146
>gi|144897615|emb|CAM74479.1| DNA repair protein RadC [Magnetospirillum gryphiswaldense MSR-1]
Length = 237
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
+ P + + GH RLR RFL + NAL YEILEL+L +IPRKDTK +AKAL+ F
Sbjct: 10 EDPDAAT-PHHAGHRERLRQRFLAE-PNALPDYEILELLLASVIPRKDTKPLAKALIAEF 67
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
T V AP+ L+ + A LK+V A+ R+ + + +T L
Sbjct: 68 KTFADVLAAPVQALESFTGVSAATAAYLKVVEHAATRMARLQVIDRPVITKWDQLLDYCT 127
Query: 128 RHYPMKNANNFAYCFSI--NII 147
F F N++
Sbjct: 128 IAMGRLPTEQFRLLFLDRKNVL 149
>gi|15676925|ref|NP_274072.1| DNA repair protein RadC [Neisseria meningitidis MC58]
gi|304387460|ref|ZP_07369651.1| DNA repair protein RadC [Neisseria meningitidis ATCC 13091]
gi|13431810|sp|Q9JZI3|Y1038_NEIMB RecName: Full=UPF0758 protein NMB1038
gi|7226278|gb|AAF41437.1| DNA repair protein RadC [Neisseria meningitidis MC58]
gi|304338553|gb|EFM04672.1| DNA repair protein RadC [Neisseria meningitidis ATCC 13091]
gi|308389364|gb|ADO31684.1| putative DNA repair protein [Neisseria meningitidis alpha710]
gi|325128326|gb|EGC51210.1| DNA repair protein RadC [Neisseria meningitidis N1568]
gi|325130285|gb|EGC53052.1| DNA repair protein RadC [Neisseria meningitidis OX99.30304]
gi|325202038|gb|ADY97492.1| DNA repair protein RadC [Neisseria meningitidis M01-240149]
gi|325204253|gb|ADY99706.1| DNA repair protein RadC [Neisseria meningitidis M01-240355]
gi|325208209|gb|ADZ03661.1| DNA repair protein RadC [Neisseria meningitidis NZ-05/33]
Length = 225
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 45/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L ++L +A+ LL+ F +LG + A
Sbjct: 4 KQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +G + +V +RIL L+ + H +
Sbjct: 64 EVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|332159686|ref|YP_004296263.1| DNA repair protein RadC [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|318603785|emb|CBY25283.1| DNA repair protein RadC [Yersinia enterocolitica subsp. palearctica
Y11]
gi|325663916|gb|ADZ40560.1| DNA repair protein RadC [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330859989|emb|CBX70317.1| DNA repair protein radC homolog [Yersinia enterocolitica W22703]
Length = 222
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L E+L + L IP +A+ L++ F +L G+ A +L
Sbjct: 10 PREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMQMAEYLIEEFGSLYGLISADYQVLCAQ 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +++ ++ + R ++ + L + ++ + F F
Sbjct: 70 KGIGVSKYSQIQAIAELAGRCFSSHLMQESVLQNPEITQKFLQNILSHREREIFLVMFLD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|197286970|ref|YP_002152842.1| DNA repair protein [Proteus mirabilis HI4320]
gi|194684457|emb|CAR46202.1| DNA repair protein [Proteus mirabilis HI4320]
gi|301072223|gb|ADK56077.1| RadC [Proteus mirabilis]
gi|301072245|gb|ADK56098.1| RadC [Proteus mirabilis]
gi|312598063|gb|ADQ89996.1| DNA-repair protein [Proteus mirabilis]
Length = 223
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L E+L + L K +A LL++ +L V A L
Sbjct: 11 PREKLLLHGVESLTDAELLAIFLRTGTYEKSVLELADFLLRKCGSLYHVINADYETLGCF 70
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +L+ ++ +QR +K + K L+ +++ ++ F F
Sbjct: 71 KGIGVGKFTQLQAINEMAQRFIKTKFMHKNILSSSAETKSYLQKRLNWRDREVFVVLFLD 130
Query: 145 N 145
N
Sbjct: 131 N 131
>gi|312598047|gb|ADQ89981.1| DNA-repair protein [Proteus mirabilis]
Length = 223
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L E+L + L K +A LL++ +L V A L
Sbjct: 11 PREKLLLHGVESLTDAELLAIFLRTGTYEKSVLELADFLLRKCGSLYHVINADYETLGCF 70
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +L+ ++ +QR +K + K L+ +++ ++ F F
Sbjct: 71 KGIGVGKFTQLQAINEMAQRFIKTKFMHKNILSSSAETKSYLQKRLNWRDREVFVVLFLD 130
Query: 145 N 145
N
Sbjct: 131 N 131
>gi|330431915|gb|AEC16974.1| DNA repair protein RadC [Gallibacterium anatis UMN179]
Length = 221
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 46/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G + L+ E+L + L ++A+ L F +L + A E+
Sbjct: 6 PREKLLQQGADKLSDQELLAIFLRTGFKNCSVMTLAENSLHHFGSLRELLSASKEKFCEV 65
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ ++R L + + + ++ + F F
Sbjct: 66 KGLGVTQYIQLQACIEMTKRYLAQEIKQQPLFNNIEFAKLYMQTELSHQQRELFVVLFLN 125
Query: 145 N 145
N
Sbjct: 126 N 126
>gi|184159489|ref|YP_001847828.1| DNA repair protein [Acinetobacter baumannii ACICU]
gi|183211083|gb|ACC58481.1| DNA repair protein [Acinetobacter baumannii ACICU]
Length = 239
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
++ + R R+R LQ+G +L+ E+L + L + +A+ L+++F +L
Sbjct: 6 NTSIKNWPEQERPRERLLQQGPQSLSDSELLAIFLRSGSRQHSAVELARLLIQQFGSLNA 65
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYP 131
VF A + L + N IG +L V +R L ++S + L L +
Sbjct: 66 VFDASYNELAQFNGIGATKYSQLLAVKELGRRYLDYHFSQTELSLHSSHLVLDYLRYELK 125
Query: 132 MKNANNFAYCFSI 144
+ FA
Sbjct: 126 GEKQEVFAVLCLD 138
>gi|194445201|ref|YP_002042979.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|238693551|sp|B4SXE0|YICR_SALNS RecName: Full=UPF0758 protein yicR
gi|194403864|gb|ACF64086.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
Length = 221
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +L+ E+L L L P KD ++AK +L+ F +L G+ A + +
Sbjct: 9 PREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSADFAQFRGV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG +LK ++ ++R + + L + ++ + F F
Sbjct: 69 NGIGLAKFAQLKGIAELARRYYSVRMNEESALLSPEMTREFLQSQLTCEEREIFLVIFLD 128
>gi|294842541|ref|ZP_06787224.1| DNA repair protein RadC [Acinetobacter sp. 6014059]
gi|322509402|gb|ADX04856.1| DNA repair protein radC-like protein [Acinetobacter baumannii
1656-2]
gi|323519423|gb|ADX93804.1| DNA repair protein, associated with replication forks
[Acinetobacter baumannii TCDC-AB0715]
Length = 235
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
++ + R R+R LQ+G +L+ E+L + L + +A+ L+++F +L
Sbjct: 2 NTSIKNWPEQERPRERLLQQGPQSLSDSELLAIFLRSGSRQHSAVELARLLIQQFGSLNA 61
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYP 131
VF A + L + N IG +L V +R L ++S + L L +
Sbjct: 62 VFDASYNELAQFNGIGATKYSQLLAVKELGRRYLDYHFSQTELSLHSSHLVLDYLRYELK 121
Query: 132 MKNANNFAYCFSI 144
+ FA
Sbjct: 122 GEKQEVFAVLCLD 134
>gi|317129783|ref|YP_004096065.1| DNA repair protein RadC [Bacillus cellulosilyticus DSM 2522]
gi|315474731|gb|ADU31334.1| DNA repair protein RadC [Bacillus cellulosilyticus DSM 2522]
Length = 191
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R +++G L+ +++ ++L + +A +++ F L + A + LQ
Sbjct: 13 ERPRERMMREGAQTLSNQDLIAVLLGSGTKSESVLQLAGRVIQHFDGLKLLKEASIPELQ 72
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I IG+ A+ +K +RI + + + + + + +F +
Sbjct: 73 NIKGIGEAKAVTIKAAMELGKRIQQFSVIDRYTIRSPEDAANYMMEEMRHLTQEHFVALY 132
Query: 143 SI 144
Sbjct: 133 LN 134
>gi|258592223|emb|CBE68532.1| DNA repair protein radC homolog [NC10 bacterium 'Dutch sediment']
Length = 245
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 47/132 (35%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
S + R R+R LQ G AL E+L ++L + +A++LL++ L
Sbjct: 8 TSAIKAWPVEERPRERLLQHGSGALTTAELLAILLRTGTGGQSAVELARSLLEKSGGLRE 67
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
+ + LQE +G +LK +R++ + +T + +
Sbjct: 68 LDRKSVEELQEAKGLGLAKIAQLKAGLELGRRLMAEEKKVLGAVTSSKEVYEWLRPQMQG 127
Query: 133 KNANNFAYCFSI 144
F
Sbjct: 128 LAKEVFKVLLLN 139
>gi|192288820|ref|YP_001989425.1| DNA repair protein RadC [Rhodopseudomonas palustris TIE-1]
gi|192282569|gb|ACE98949.1| DNA repair protein RadC [Rhodopseudomonas palustris TIE-1]
Length = 239
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 71/143 (49%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
++ + P Y GH RLR+RF + G +AL+ YE+LEL+LFR +PR+D K IAK
Sbjct: 4 DNAERLQQPGFAEAPHYHGHRERLRERFREAGSDALSDYELLELVLFRALPRRDVKPIAK 63
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
L+ RF + AP L+E++ +G+ +E+ L++ A+ R+ K + L+
Sbjct: 64 ELIARFGSFAEAVHAPAERLREVSGVGEAAIIEIGLIAAAAARVTKGQVKQRTVLSSWSA 123
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 124 VIDYCRTTMAFADKEQFRILFLD 146
>gi|218663722|ref|ZP_03519652.1| DNA repair protein RadC [Rhizobium etli IE4771]
Length = 168
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 62/141 (43%), Positives = 85/141 (60%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+ + R + S + Y GH RLRDRF ++G+ ALA YEILEL+LFRLIPR+DTK IA
Sbjct: 27 VPNARTALPASLSAPEHYHGHRERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIA 86
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
KAL++RF +L GVFGAP LL E+ +G+ VAL+LKL+S + R LK+ K+ L+
Sbjct: 87 KALIERFGSLSGVFGAPAALLTEVKGVGENVALDLKLISTVAHRTLKSEIRSKQVLSSWS 146
Query: 121 PCLISVERHYPMKNANNFAYC 141
+ + F
Sbjct: 147 SVIQYCHAAMAHETREQFRIL 167
>gi|320539885|ref|ZP_08039544.1| protein associated with replication fork, possible DNA repair
protein [Serratia symbiotica str. Tucson]
gi|320030071|gb|EFW12091.1| protein associated with replication fork, possible DNA repair
protein [Serratia symbiotica str. Tucson]
Length = 227
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ E+L + L +P +A+ LL++F +L + A +
Sbjct: 15 PREKLLNHGAAALSDVELLAIFLRTGLPGLHVIQLAEQLLRQFGSLYHLMSADHQVFCSQ 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ +S + R ++ + + + + ++ F F
Sbjct: 75 KGLGNASCAQLQAISKLAFRFFSSHLAQENAMLNPRITQHYLQSLLAHHEREVFLVLFLD 134
Query: 145 N 145
N
Sbjct: 135 N 135
>gi|260557106|ref|ZP_05829322.1| DNA repair protein radC [Acinetobacter baumannii ATCC 19606]
gi|260409212|gb|EEX02514.1| DNA repair protein radC [Acinetobacter baumannii ATCC 19606]
Length = 235
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
++ + R R+R LQ+G +L+ E+L + L + +A+ L+++F +L
Sbjct: 2 NNSIKNWPEQERPRERLLQQGPQSLSDSELLAIFLRSGSRQHSAVELARLLIQQFGSLNA 61
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYP 131
VF A + L + N IG +L V +R L ++S + L L +
Sbjct: 62 VFDASYNELAQFNGIGATKYSQLLAVKELGRRYLDYHFSQTELSLHSSHLVLDYLRYELK 121
Query: 132 MKNANNFAYCFSI 144
+ FA
Sbjct: 122 GEKQEVFAVLCLD 134
>gi|254522249|ref|ZP_05134304.1| DNA repair protein [Stenotrophomonas sp. SKA14]
gi|219719840|gb|EED38365.1| DNA repair protein [Stenotrophomonas sp. SKA14]
Length = 246
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 9/145 (6%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+D RM + R R++ + +G AL+ E+L L L +D A+
Sbjct: 9 DDARMP--------IHDWPEQERPREKLIARGPAALSDAELLALFLGSGFGGRDAVQTAR 60
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFL-TPGQ 120
LL+ L + P + + +G + L + R L A + +
Sbjct: 61 DLLQAHGPLRTLLDRPAGEMARLPGLGPARSCTLAAGLELAHRYLAAELEHGEAVGNNPA 120
Query: 121 PCLISVERHYPMKNANNFAYCFSIN 145
++ + F F N
Sbjct: 121 AVGRYLQHRLRGQAREIFMALFLDN 145
>gi|157373074|ref|YP_001481063.1| DNA repair protein RadC [Serratia proteamaculans 568]
gi|172047792|sp|A8GLE5|Y4842_SERP5 RecName: Full=UPF0758 protein Spro_4842
gi|157324838|gb|ABV43935.1| DNA repair protein RadC [Serratia proteamaculans 568]
Length = 227
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL+ E+L + L P +A+ LL++F +L + A +
Sbjct: 15 PREKLLRYGASALSDAELLAIFLRTGFPGVHVMQLAEQLLEQFGSLYHLMSADHSVFCSH 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ +S + R ++ + + + + ++ F F
Sbjct: 75 KGLGNSSYSQLQAISELAFRFFSSHLAQENAMLNPRMTQHYLQSLLVHHEREVFLVLFLD 134
Query: 145 N 145
N
Sbjct: 135 N 135
>gi|327395780|dbj|BAK13202.1| DNA repair protein RadC RadC [Pantoea ananatis AJ13355]
Length = 228
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ + G +AL+ E+L + L +A+ +L+ +L + A + I
Sbjct: 16 PREKLKRLGADALSDAELLAIFLRTGSRGVPVMKLAQQMLQELGSLYNIVNASAEDFKGI 75
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G+ ++L+ V+ ++R + + + L ++ + F F
Sbjct: 76 KGAGEIKLIQLRAVAELAKRFFASQLARENTLDSPLATRQYLQTLLAEQEREIFVVMFLD 135
Query: 145 N 145
N
Sbjct: 136 N 136
>gi|39933462|ref|NP_945738.1| DNA repair protein RadC [Rhodopseudomonas palustris CGA009]
gi|39647308|emb|CAE25829.1| possible DNA repair protein RadC [Rhodopseudomonas palustris
CGA009]
Length = 241
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 70/143 (48%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
++ + P Y GH RLR+RF + G +AL+ YE+LEL+LFR +PR+D K IAK
Sbjct: 6 DNAERLQQPGFAEAPHYHGHRERLRERFREAGSDALSDYELLELVLFRALPRRDVKPIAK 65
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
L+ RF + AP L+E++ +G +E+ L++ A+ R+ K + L+
Sbjct: 66 ELIARFGSFAEAVHAPAERLREVSGVGDAAIIEIGLIAAAAARVTKGQVKQRTVLSSWSA 125
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 126 VIDYCRTTMAFADKEQFRILFLD 148
>gi|21244634|ref|NP_644216.1| DNA repair protein RadC [Xanthomonas axonopodis pv. citri str. 306]
gi|25009022|sp|Q8PFR3|Y3915_XANAC RecName: Full=UPF0758 protein XAC3915
gi|21110318|gb|AAM38752.1| DNA repair protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 225
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 50/131 (38%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
H+ H R R++ L +G AL+ E+L +++ + +D A+ LL R L +
Sbjct: 2 HIHDWPTHERPREKLLARGATALSDAELLAILVGSGLRGQDAVQTARDLLHRHGPLRLLL 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
P L + +G A + +QR L + + L+ + +
Sbjct: 62 DRPAKALTRLPGLGPASACKFAAAMELAQRHLMSALERGEALSDPPSVGRYFSQRLRARA 121
Query: 135 ANNFAYCFSIN 145
FA F N
Sbjct: 122 YEVFAVLFLDN 132
>gi|85710819|ref|ZP_01041880.1| RadC [Idiomarina baltica OS145]
gi|85695223|gb|EAQ33160.1| RadC [Idiomarina baltica OS145]
Length = 260
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 48/126 (38%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R++ Q G +AL+ E+L ++L D + A+ LL +F +G + +
Sbjct: 42 WPESERPREKLQQFGVSALSDAELLAILLGSGCRGLDVVTFARQLLVQFNGIGPLLTSSN 101
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L + +G +L++V S+R L S + T + + F
Sbjct: 102 QQLMAVKGLGPARINQLQVVLELSKRYLAWQLSRRDGFTEPSMVKEYLSTQLRHQRREVF 161
Query: 139 AYCFSI 144
A
Sbjct: 162 ALLLLD 167
>gi|319410519|emb|CBY90882.1| putative DNA repair protein RadC [Neisseria meningitidis WUE 2594]
Length = 225
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 45/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L ++L +A+ LL+ F +LG + A
Sbjct: 4 KQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +G + +V +RIL L+ + H +
Sbjct: 64 EVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|299531454|ref|ZP_07044862.1| DNA repair protein RadC [Comamonas testosteroni S44]
gi|298720617|gb|EFI61566.1| DNA repair protein RadC [Comamonas testosteroni S44]
Length = 230
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL------KRFATLGGVFGAPL 78
R++ Q+G AL+ E+L +IL + K +A+ LL + L G+ A
Sbjct: 12 PREKLAQRGAAALSDAELLAVILRTGMAGKTVLQMAQELLELPGDHQGTGGLAGLLAADY 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L + +G EL V ++R ++ L+ + ++ H + F
Sbjct: 72 QALTAVKGLGPAKRAELMAVLELARRATAQQLREREVLSSPEAVKHYLQLHLAARPHEVF 131
Query: 139 AYCFSI 144
A F
Sbjct: 132 AVLFLD 137
>gi|256827872|ref|YP_003156600.1| DNA repair protein RadC [Desulfomicrobium baculatum DSM 4028]
gi|256577048|gb|ACU88184.1| DNA repair protein RadC [Desulfomicrobium baculatum DSM 4028]
Length = 226
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K+ Y+GH RLR+R AL+ YEILEL+L +PRKDTKSIAK ++ RF +LG
Sbjct: 2 KEDTAHYLGHRERLRERL-DNDPRALSDYEILELLLTYALPRKDTKSIAKEMISRFGSLG 60
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
A + EI +G+ A + + R + + ++ + V
Sbjct: 61 DALLADPGRIAEIPGLGEGAARFWRTLHECRARKACGSIARREKFSSPDQVRDMVCSRLG 120
Query: 132 MKNANNFAYCFSIN 145
F N
Sbjct: 121 HLTKEEFWVILVDN 134
>gi|172046847|sp|Q12EY8|Y948_POLSJ RecName: Full=UPF0758 protein Bpro_0948
Length = 224
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 50/128 (39%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ R R++ L +G AL+ E+L L+L +P K+ + + L+ F + G+
Sbjct: 4 KDLPEDARPREKLLARGPAALSDAELLALLLRTGLPGKNALQMGQELVDTFGGVAGLLHT 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L+ I +G EL V ++R L K + Q ++ +
Sbjct: 64 GPEALKSIKGLGPAKRAELVAVLELARRALAEELKEKALFSTPQAVRDYLQLQLGGRPHE 123
Query: 137 NFAYCFSI 144
FA F
Sbjct: 124 IFAVLFLD 131
>gi|238783986|ref|ZP_04628002.1| DNA repair protein radC [Yersinia bercovieri ATCC 43970]
gi|238715094|gb|EEQ07090.1| DNA repair protein radC [Yersinia bercovieri ATCC 43970]
Length = 249
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G + L+ E+L L L IP +A+ L++ F +L G+ A L
Sbjct: 37 PREKLLKYGASVLSDAELLALFLRTGIPGMHVMKMAEYLIETFGSLHGLMSADYQTLCAQ 96
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +++ ++ + R ++ + L + ++ + F F
Sbjct: 97 KGIGASKYSQIQAIAELANRCFSSHLMQESVLLNPEVTQHFLQNILSHREREIFLVMFLD 156
Query: 145 N 145
N
Sbjct: 157 N 157
>gi|121634962|ref|YP_975207.1| DNA repair protein RadC [Neisseria meningitidis FAM18]
gi|166218786|sp|A1KU78|Y1174_NEIMF RecName: Full=UPF0758 protein NMC1174
gi|120866668|emb|CAM10420.1| putative DNA repair protein [Neisseria meningitidis FAM18]
gi|325132546|gb|EGC55239.1| DNA repair protein RadC [Neisseria meningitidis M6190]
gi|325198403|gb|ADY93859.1| DNA repair protein RadC [Neisseria meningitidis G2136]
Length = 225
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 45/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L ++L +A+ LL+ F +LG + A
Sbjct: 4 KQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +G + +V +RIL L+ + H +
Sbjct: 64 EVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|73667265|ref|YP_303281.1| DNA repair protein RadC [Ehrlichia canis str. Jake]
gi|72394406|gb|AAZ68683.1| DNA repair protein RadC [Ehrlichia canis str. Jake]
Length = 230
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 57/134 (42%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ IGH RLR + L G L YEILELIL RKD K IAK L+K F +
Sbjct: 4 KDEHKKQQIGHRKRLRQKLLSGGNKGLLDYEILELILCSSHIRKDVKPIAKRLIKHFGSF 63
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
VF A + L E++ IG+ + + RIL+ + + Q + +
Sbjct: 64 SKVFFADFNQLTEVHGIGEASVSAILCIRETLNRILREDIDHGVIINQWQKLIEYLRIKI 123
Query: 131 PMKNANNFAYCFSI 144
N NF +
Sbjct: 124 GNGNIENFHILYLN 137
>gi|161870118|ref|YP_001599288.1| DNA repair protein RadC [Neisseria meningitidis 053442]
gi|218768270|ref|YP_002342782.1| DNA repair protein RadC [Neisseria meningitidis Z2491]
gi|13431809|sp|Q9JU84|Y1448_NEIMA RecName: Full=UPF0758 protein NMA1448
gi|189029398|sp|A9LZF5|Y1157_NEIM0 RecName: Full=UPF0758 protein NMCC_1157
gi|121052278|emb|CAM08606.1| putative DNA repair protein [Neisseria meningitidis Z2491]
gi|161595671|gb|ABX73331.1| DNA repair protein [Neisseria meningitidis 053442]
gi|254671390|emb|CBA08859.1| DNA repair protein RadC [Neisseria meningitidis alpha153]
gi|254673513|emb|CBA08942.1| DNA repair protein RadC [Neisseria meningitidis alpha275]
gi|261392467|emb|CAX50016.1| putative DNA repair protein RadC [Neisseria meningitidis 8013]
gi|316984664|gb|EFV63628.1| DNA repair RadC family protein [Neisseria meningitidis H44/76]
gi|325134196|gb|EGC56845.1| DNA repair protein RadC [Neisseria meningitidis M13399]
gi|325140244|gb|EGC62769.1| DNA repair protein RadC [Neisseria meningitidis CU385]
gi|325144387|gb|EGC66689.1| DNA repair protein RadC [Neisseria meningitidis M01-240013]
gi|325200279|gb|ADY95734.1| DNA repair protein RadC [Neisseria meningitidis H44/76]
gi|325206135|gb|ADZ01588.1| DNA repair protein RadC [Neisseria meningitidis M04-240196]
Length = 225
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 45/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L ++L +A+ LL+ F +LG + A
Sbjct: 4 KQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +G + +V +RIL L+ + H +
Sbjct: 64 EVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|323527115|ref|YP_004229268.1| DNA repair protein RadC [Burkholderia sp. CCGE1001]
gi|323384117|gb|ADX56208.1| DNA repair protein RadC [Burkholderia sp. CCGE1001]
Length = 254
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 50/140 (35%)
Query: 5 RMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
+ K + R+R + +G L+ E++ L+L +P D S+A+ LL
Sbjct: 22 APAAGKPKARRRRKWPKRDMPRERLIDQGPGVLSDTEMIVLVLGSGLPGHDVFSVARELL 81
Query: 65 KRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
+RF +L + A + IG +L + ++R L + + +
Sbjct: 82 ERFGSLRAMLDATYADFDGLRGIGPAKKAQLLAIMEMARRSLVDKMRRRSLMNSPEAVEN 141
Query: 125 SVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 142 YLRLLIGGRPQEVFVSLFLD 161
>gi|167037861|ref|YP_001665439.1| DNA repair protein RadC [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|167040758|ref|YP_001663743.1| DNA repair protein RadC [Thermoanaerobacter sp. X514]
gi|166854998|gb|ABY93407.1| DNA repair protein RadC [Thermoanaerobacter sp. X514]
gi|166856695|gb|ABY95103.1| DNA repair protein RadC [Thermoanaerobacter pseudethanolicus ATCC
33223]
Length = 236
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 51/128 (39%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ + R R+R ++ G L+ E++ +I+ R+ S+A+ L+ L + +
Sbjct: 13 KDLPYEERPRERLIKHGAQVLSNVELIAIIIGTGSKRESAISLAQRLIMEDRGLKFIVDS 72
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L I IG A++LK +R++ + S +T + + +
Sbjct: 73 SVEKLASIKGIGIAKAVKLKAAVELGRRMMLSTGSDSFTITSPEDVINLMMDEMRYLTKE 132
Query: 137 NFAYCFSI 144
+F
Sbjct: 133 HFKVIMLN 140
>gi|307258076|ref|ZP_07539828.1| hypothetical protein appser10_20560 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306863439|gb|EFM95370.1| hypothetical protein appser10_20560 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 223
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L E+L + L I +++ +L F +L + A L I
Sbjct: 8 PREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRI 67
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ ++R L +++ + ++ + + F F
Sbjct: 68 KGLGQTQFIQLQASKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLD 127
Query: 145 N 145
N
Sbjct: 128 N 128
>gi|262281059|ref|ZP_06058841.1| DNA repair protein [Acinetobacter calcoaceticus RUH2202]
gi|262257290|gb|EEY76026.1| DNA repair protein [Acinetobacter calcoaceticus RUH2202]
Length = 239
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
++ + R R+R LQ+G +L+ E+L + L + +++ L++ F +L
Sbjct: 6 NTSIKNWPEQERPRERLLQQGPQSLSDAELLAIFLRSGSRQHSAVELSRLLIQHFGSLNA 65
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYP 131
VF + L L + N IG +L V +R L ++ L L +
Sbjct: 66 VFDSSLSELTQFNGIGATKYSQLLAVKELGRRYLDHHFQQNNLSLHSSDLVLDYLRYELK 125
Query: 132 MKNANNFAYCFSI 144
+ FA
Sbjct: 126 GEKQEVFAVLCLD 138
>gi|281357981|ref|ZP_06244466.1| DNA repair protein RadC [Victivallis vadensis ATCC BAA-548]
gi|281315639|gb|EFA99667.1| DNA repair protein RadC [Victivallis vadensis ATCC BAA-548]
Length = 227
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 4/139 (2%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M+ AP + GH RLR+RFL+ G L YE +EL+L IPR D K +AK LL+
Sbjct: 1 MATAPKNPNS----GHRKRLRERFLRAGLEGLQDYEAIELVLTFAIPRHDVKPLAKQLLE 56
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
+ +L + A L + + +G+ L L + L+ L +
Sbjct: 57 HYGSLEKLLDATPAELLDQHGLGEAAVTLLALHKQLCTKYLEQKARDVDVLDNTTKIVNF 116
Query: 126 VERHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 117 LRMKLGGGKKETFMVLFLN 135
>gi|256750969|ref|ZP_05491852.1| DNA repair protein RadC [Thermoanaerobacter ethanolicus CCSD1]
gi|300914796|ref|ZP_07132112.1| DNA repair protein RadC [Thermoanaerobacter sp. X561]
gi|307723970|ref|YP_003903721.1| DNA repair protein RadC [Thermoanaerobacter sp. X513]
gi|320116278|ref|YP_004186437.1| DNA repair protein RadC [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|256750079|gb|EEU63100.1| DNA repair protein RadC [Thermoanaerobacter ethanolicus CCSD1]
gi|300889731|gb|EFK84877.1| DNA repair protein RadC [Thermoanaerobacter sp. X561]
gi|307581031|gb|ADN54430.1| DNA repair protein RadC [Thermoanaerobacter sp. X513]
gi|319929369|gb|ADV80054.1| DNA repair protein RadC [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 226
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 51/128 (39%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ + R R+R ++ G L+ E++ +I+ R+ S+A+ L+ L + +
Sbjct: 3 KDLPYEERPRERLIKHGAQVLSNVELIAIIIGTGSKRESAISLAQRLIMEDRGLKFIVDS 62
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L I IG A++LK +R++ + S +T + + +
Sbjct: 63 SVEKLASIKGIGIAKAVKLKAAVELGRRMMLSTGSDSFTITSPEDVINLMMDEMRYLTKE 122
Query: 137 NFAYCFSI 144
+F
Sbjct: 123 HFKVIMLN 130
>gi|238798812|ref|ZP_04642281.1| DNA repair protein radC [Yersinia mollaretii ATCC 43969]
gi|238717320|gb|EEQ09167.1| DNA repair protein radC [Yersinia mollaretii ATCC 43969]
Length = 222
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L+ E+L L L IP +A+ L++ F +L G+ A L
Sbjct: 10 PREKLLKYGAAVLSDAELLALFLRTGIPGMHVMKMAECLIETFGSLHGLMSADYQTLCAQ 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +++ ++ + R ++ + L + ++ + F F
Sbjct: 70 KGIGASKYSQIQAIAELASRCFSSHLMQESVLLNPKVTQQFLQNILSHREREIFLVMFLD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|253690461|ref|YP_003019651.1| DNA repair protein RadC [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259551881|sp|C6DIC1|Y4100_PECCP RecName: Full=UPF0758 protein PC1_4100
gi|251757039|gb|ACT15115.1| DNA repair protein RadC [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 221
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ ++ G +L E+L + L +P +A+ LL +F +L + A +
Sbjct: 9 PREKLVRLGAESLTDVELLAIFLRTGLPGVHVMQLAEDLLVQFGSLYQLMTADQSAFRTA 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++K ++ S+R+ + + + + Q ++ + F F
Sbjct: 69 KGVGISKYTQIKAIAELSRRLFFSRLAKEDAMLNPQATGQYLQLLLSRREREVFLVLFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|294142830|ref|YP_003558808.1| DNA repair protein RadC [Shewanella violacea DSS12]
gi|293329299|dbj|BAJ04030.1| DNA repair protein RadC [Shewanella violacea DSS12]
Length = 225
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 44/120 (36%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
RD+ L +G L+ E+L ++L + +A+ L+ +F L + A + +
Sbjct: 12 PRDKLLSQGAGQLSDSELLAILLRNGLQGLSAVQLARDLISQFGGLRELLKASQQEVCKQ 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ + S RI K L+ + R + FA
Sbjct: 72 PGMGPVKFAQLQAAAELSTRISAEKLKRGKILSDPDLTRDYLMRQLQDRAYEVFAILLLD 131
>gi|291619457|ref|YP_003522199.1| RadC [Pantoea ananatis LMG 20103]
gi|291154487|gb|ADD79071.1| RadC [Pantoea ananatis LMG 20103]
Length = 228
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ + G +AL+ E+L + L +A+ +L+ +L + A + I
Sbjct: 16 PREKLKRLGADALSDAELLAIFLRTGSRGVPVMKLAQQMLQELGSLYNIVNASAEDFKGI 75
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G+ ++L+ V+ ++R + + + L ++ + F F
Sbjct: 76 KGAGEIKLIQLRAVAELAKRFFASQLARENTLDSPLATRQYLQTLLAEQEREIFIVMFLD 135
Query: 145 N 145
N
Sbjct: 136 N 136
>gi|157373526|ref|YP_001472126.1| DNA repair protein RadC [Shewanella sediminis HAW-EB3]
gi|189029405|sp|A8FQ75|Y385_SHESH RecName: Full=UPF0758 protein Ssed_0385
gi|157315900|gb|ABV34998.1| DNA repair protein RadC [Shewanella sediminis HAW-EB3]
Length = 225
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 47/120 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L+ E+L ++L + +A+ L+ +F L + A + +
Sbjct: 12 PREKLLKLGVGPLSDAELLAVVLRNGVQGLSAVELARNLIGQFGGLRELLTASEIEVCRM 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ + S+RI + N K L+ + R + FA
Sbjct: 72 PGMGPVKFAQLQAAAELSKRISQQNLKRGKILSDPDLTRDYLMRQLADRAYEVFAILLLD 131
>gi|254513496|ref|ZP_05125561.1| DNA repair protein RadC [Rhodobacteraceae bacterium KLH11]
gi|221532500|gb|EEE35496.1| DNA repair protein RadC [Rhodobacteraceae bacterium KLH11]
Length = 312
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
K Y GH RLR+RFL+ G + YE+LEL+LF I R D K +AK LL F
Sbjct: 80 KGDDGAKRPHYWGHRQRLRERFLKGGHGPMPEYELLELLLFNAIQRIDVKPLAKRLLAEF 139
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
L GV A H + ++ V L++V R+ +A + ++ +
Sbjct: 140 GDLNGVIAASKHRILKVEGANDWVYYHLRVVEAFGHRMAQAQVMKRDVVSSWDALVTYCR 199
Query: 128 RHYPMKNANNFAYCFSI--NII 147
+ F + N++
Sbjct: 200 TAMAHREVEQFRVLYLDRKNVL 221
>gi|260548778|ref|ZP_05823000.1| DNA repair protein [Acinetobacter sp. RUH2624]
gi|260407946|gb|EEX01417.1| DNA repair protein [Acinetobacter sp. RUH2624]
Length = 235
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
++ + R R+R LQ+G +L+ E+L + L + +A+ L+++F +L
Sbjct: 2 NTSIKNWPEQERPRERLLQQGPQSLSDSELLAIFLRSGSRQHSAVELARLLIQQFGSLNA 61
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYP 131
VF A + L + N IG +L V +R L ++S + L L +
Sbjct: 62 VFDASFNELAQFNGIGATKYSQLLAVKELGRRYLDYHFSQTELSLHSSHLVLDYLRYELK 121
Query: 132 MKNANNFAYCFSI 144
+ FA
Sbjct: 122 GEKQEVFAVLCLD 134
>gi|294666100|ref|ZP_06731358.1| DNA repair protein RadC [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292604114|gb|EFF47507.1| DNA repair protein RadC [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 225
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 50/131 (38%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
H+ H R R++ L +G AL+ E+L + + + +D A+ LL R L +
Sbjct: 2 HIHDWPTHERPREKLLARGATALSDAELLAIFVGSGLRGQDAVQTARDLLHRDGPLRLLL 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
P L + +G A +L +QR L + + L+ + +
Sbjct: 62 DRPAKALTRLPGLGPASACKLAAAMELAQRHLMSALERGEALSDPPSVGRYFSQRLRARA 121
Query: 135 ANNFAYCFSIN 145
FA F N
Sbjct: 122 YEVFAVLFLDN 132
>gi|294625196|ref|ZP_06703838.1| DNA repair protein RadC [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292600515|gb|EFF44610.1| DNA repair protein RadC [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 225
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 50/131 (38%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
H+ H R R++ L +G AL+ E+L + + + +D A+ LL R L +
Sbjct: 2 HIHDWPTHERPREKLLARGATALSDAELLAIFVGSGLRGQDAVQTARDLLHRDGPLRLLL 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
P L + +G A +L +QR L + + L+ + +
Sbjct: 62 DRPAKALARLPGLGPASACKLAAAMELAQRHLMSALERGEALSDPPSVGRYFSQRLRARA 121
Query: 135 ANNFAYCFSIN 145
FA F N
Sbjct: 122 YEVFAVLFLDN 132
>gi|261400629|ref|ZP_05986754.1| DNA repair protein RadC [Neisseria lactamica ATCC 23970]
gi|313668384|ref|YP_004048668.1| DNA repair protein [Neisseria lactamica ST-640]
gi|269209535|gb|EEZ75990.1| DNA repair protein RadC [Neisseria lactamica ATCC 23970]
gi|313005846|emb|CBN87302.1| putative DNA repair protein [Neisseria lactamica 020-06]
Length = 225
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 46/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L ++L +A+ LL+ F +LG + A
Sbjct: 4 KQWPEGERPREKLLERGAEALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +G + +V +RIL + L+ + H +
Sbjct: 64 EVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQEEITLSDPDTVADYLRFHLGQEKVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|50086129|ref|YP_047639.1| DNA repair protein, associated with replication forks
[Acinetobacter sp. ADP1]
gi|54036221|sp|Q6F7Z8|Y3126_ACIAD RecName: Full=UPF0758 protein ACIAD3126
gi|49532105|emb|CAG69817.1| DNA repair protein, associated with replication forks
[Acinetobacter sp. ADP1]
Length = 271
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
+ + + R R+R L G +L+ E+L + L + +A+ +++ F L
Sbjct: 17 NQSIKFWPEQERPRERLLHSGPESLSDAELLAIFLRTGSKQHSAVELARLMIQHFGGLNP 76
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYP 131
VF A L L + IG L V +R L + L + L +
Sbjct: 77 VFDASLQELSHFHGIGTTKYAHLMAVKELGRRYLNHYFHQDALNLNSSRLVLDYLRYELL 136
Query: 132 MKNANNFAYCFSI 144
+ FA
Sbjct: 137 GEKQEVFAVLCLD 149
>gi|304407507|ref|ZP_07389159.1| DNA repair protein RadC [Paenibacillus curdlanolyticus YK9]
gi|304343458|gb|EFM09300.1| DNA repair protein RadC [Paenibacillus curdlanolyticus YK9]
Length = 229
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 51/122 (41%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R + G AL++ E+L ++L R+ +A LL+ L + L L
Sbjct: 15 ERPRERMMAHGAEALSHSELLAILLRTGTSRESVVELASRLLQECGGLRNLVDFSLEQLM 74
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
E++ +G AL+LK +RI + + + + Q V ++ +F F
Sbjct: 75 ELHGVGPAKALQLKAGIELGRRIAASRFGDRPVIKRPQDAAELVMDELRYQSREHFMCLF 134
Query: 143 SI 144
Sbjct: 135 LN 136
>gi|299768777|ref|YP_003730803.1| DNA repair protein RadC [Acinetobacter sp. DR1]
gi|298698865|gb|ADI89430.1| DNA repair protein RadC [Acinetobacter sp. DR1]
Length = 235
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
++ + R R+R LQ+G +L+ E+L + L + +++ L++ F +L
Sbjct: 2 NTSIKNWPEQERPRERLLQQGPQSLSDAELLAIFLRSGSKQHSAVELSRLLIQHFGSLNA 61
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYP 131
VF + L L + N IG +L V +R L ++ L L +
Sbjct: 62 VFDSSLSELTQFNGIGATKYSQLLAVKELGRRYLDHHFQKNNLSLHSSDLVLDYLRYELK 121
Query: 132 MKNANNFAYCFSI 144
+ FA
Sbjct: 122 GEKQEVFAVLCLD 134
>gi|254805054|ref|YP_003083275.1| DNA repair protein RadC [Neisseria meningitidis alpha14]
gi|254668596|emb|CBA06141.1| DNA repair protein RadC [Neisseria meningitidis alpha14]
Length = 225
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 46/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L ++L +A+ LL+ F +LG + A
Sbjct: 4 KQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +G + +V +RIL + L+ + H +
Sbjct: 64 EVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQEEITLSDPDTVADYLRFHLGQEKVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|229062148|ref|ZP_04199472.1| DNA repair protein radC [Bacillus cereus AH603]
gi|228717131|gb|EEL68807.1| DNA repair protein radC [Bacillus cereus AH603]
Length = 240
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + +++ +L F L + A L +
Sbjct: 26 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLTLSDNILHHFDGLRMLKDATLEEMM 85
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 86 SIHGVGIAKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCASYMMEEMRFLQQEHFVCLY 145
Query: 143 SI 144
Sbjct: 146 LN 147
>gi|89902021|ref|YP_524492.1| DNA repair protein RadC [Rhodoferax ferrireducens T118]
gi|122478527|sp|Q21TE2|Y3252_RHOFD RecName: Full=UPF0758 protein Rfer_3252
gi|89346758|gb|ABD70961.1| DNA repair protein RadC [Rhodoferax ferrireducens T118]
Length = 234
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 10/138 (7%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL----------KR 66
+ R R++ L +G AL+ E+L ++L I K +A+ LL
Sbjct: 4 KDLPPDARPREKLLARGPGALSDVELLAVLLRTGIKGKGVLQMARELLELKKSGSDDNDG 63
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
F + G+ A L+ I +G EL V S+R L + +
Sbjct: 64 FDGIAGLLHATSDDLKRIKGLGPAKRAELVAVLELSRRALAQQLKERTIFATPDAVKHYL 123
Query: 127 ERHYPMKNANNFAYCFSI 144
+ H K FA F
Sbjct: 124 QLHLAAKPHEVFAVLFLD 141
>gi|261248877|emb|CBG26731.1| putative DNA repair protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
Length = 221
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +L+ E+L L L P KD ++AK +L+ F +L G+ A + +
Sbjct: 9 PREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSAYFAQFRGV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG +LK ++ ++R + + L + ++ + F F
Sbjct: 69 NGIGLAKFAQLKGIAELARRYYSVRMNEESALLSPEMTREFLQSQLTGEEREIFLVIFLD 128
>gi|282600469|ref|ZP_05974415.2| DNA repair protein RadC [Providencia rustigianii DSM 4541]
gi|282565170|gb|EFB70705.1| DNA repair protein RadC [Providencia rustigianii DSM 4541]
Length = 234
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L+ E+L + L + ++ LL+ F +L + A L +
Sbjct: 22 PREKMLAYGAASLSDAELLAIFLRTGSRGEPVLQFSERLLREFGSLYLLIQADHAKLTKC 81
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ S ++R A + + +T + + + + F F
Sbjct: 82 KGMGDCKFTQLQAASELARRCFSAQFLYEDNMTSPEMLKNRLMELFAGQEREVFMVIFLN 141
Query: 145 N 145
N
Sbjct: 142 N 142
>gi|308174501|ref|YP_003921206.1| DNA repair protein [Bacillus amyloliquefaciens DSM 7]
gi|307607365|emb|CBI43736.1| putative DNA repair protein [Bacillus amyloliquefaciens DSM 7]
gi|328554420|gb|AEB24912.1| hypothetical protein BAMTA208_13755 [Bacillus amyloliquefaciens
TA208]
gi|328912824|gb|AEB64420.1| putative DNA repair protein [Bacillus amyloliquefaciens LL3]
Length = 231
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 45/125 (36%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
+ R+R L G L+ E+L ++L + +++ LL+ F L + GA
Sbjct: 14 PEKEKPRERLLHCGAEHLSNNELLAILLRTGTKHESVMNLSHRLLRTFDGLRLLKGASAQ 73
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L I IG A+++ RI K + + + V + +F
Sbjct: 74 ELSSIPGIGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFV 133
Query: 140 YCFSI 144
+
Sbjct: 134 CLYLN 138
>gi|121606228|ref|YP_983557.1| DNA repair protein RadC [Polaromonas naphthalenivorans CJ2]
gi|171769297|sp|A1VSK8|Y3339_POLNA RecName: Full=UPF0758 protein Pnap_3339
gi|120595197|gb|ABM38636.1| DNA replication and repair protein RadC [Polaromonas
naphthalenivorans CJ2]
Length = 224
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 49/123 (39%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ L +G AL+ E+L L+L +P K+ + + LL F + G+ L
Sbjct: 9 DARPREKLLARGPAALSDAELLALLLRTGLPGKNALQMGQELLDNFGGVAGLLHTGAEAL 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ I +G E+ V ++R L K T Q ++ + FA
Sbjct: 69 KSIKGLGPAKRAEIVAVLELARRALAEELKEKALFTTPQAVRDYLQLQLGSRPHEIFAVL 128
Query: 142 FSI 144
F
Sbjct: 129 FLD 131
>gi|257139989|ref|ZP_05588251.1| DNA repair protein RadC [Burkholderia thailandensis E264]
Length = 267
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A
Sbjct: 52 RDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLTRFGSLRALLDAAPDDF 111
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + IG L V ++R L + + + + F
Sbjct: 112 KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCL 171
Query: 142 FSI 144
F
Sbjct: 172 FLD 174
>gi|23099511|ref|NP_692977.1| DNA repair protein [Oceanobacillus iheyensis HTE831]
gi|22777740|dbj|BAC14012.1| DNA repair protein (RadC family) [Oceanobacillus iheyensis HTE831]
Length = 191
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 44/128 (34%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ +R R+R L+ G + L+ EIL +++ + ++ +L F + + A
Sbjct: 9 KNVPKEDRPRERLLKHGASHLSNQEILSILIGSGTKQDSVNVLSNRILMHFEGMKLIRDA 68
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L I IG L + +R+ + + + +
Sbjct: 69 TIEELIAIKGIGTAKGLIILAAIELGKRLNTYKPDGPYVIRSPEDGASYIMEEMRYLSQE 128
Query: 137 NFAYCFSI 144
+F F
Sbjct: 129 HFVVLFLN 136
>gi|71908755|ref|YP_286342.1| DNA repair protein RadC [Dechloromonas aromatica RCB]
gi|123626759|sp|Q47BA9|Y3142_DECAR RecName: Full=UPF0758 protein Daro_3142
gi|71848376|gb|AAZ47872.1| DNA replication and repair protein RadC [Dechloromonas aromatica
RCB]
Length = 226
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
R R+R L G AL+ E+L + L + K +A+ LL RF LG + A L L
Sbjct: 10 ERPRERLLAHGPAALSDAELLAIYLRVGVRGKSAVDLARDLLHRFDGRLGTLAEASLEEL 69
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
++ IG A +LK ++R L + + T + + F
Sbjct: 70 ASVSGIGMAKAAQLKASFELTRRALSQEMATRDSFTSPGKVRDWLRLKLASRGHEVFMAL 129
Query: 142 FSI 144
+
Sbjct: 130 WLD 132
>gi|300310517|ref|YP_003774609.1| DNA repair RadC-like protein [Herbaspirillum seropedicae SmR1]
gi|300073302|gb|ADJ62701.1| DNA repair RadC-like protein [Herbaspirillum seropedicae SmR1]
Length = 224
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 50/126 (39%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R+R Q G AL+ E+L + L IP K+ +A ++RF +L GV GA
Sbjct: 6 WPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGVLGAVE 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L +G +L+ V S+R + ++ L + ++ + F
Sbjct: 66 RDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRQRELLNSTRAVGDYLKLMLAHREQECF 125
Query: 139 AYCFSI 144
F
Sbjct: 126 VALFLD 131
>gi|296313679|ref|ZP_06863620.1| DNA repair protein RadC [Neisseria polysaccharea ATCC 43768]
gi|296839740|gb|EFH23678.1| DNA repair protein RadC [Neisseria polysaccharea ATCC 43768]
Length = 225
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 46/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L ++L +A+ LL+ F +LG + A
Sbjct: 4 KQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +G + +V +RIL + L+ + H +
Sbjct: 64 EVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQEEITLSDPDTVADYLRFHLGQEKVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|289671096|ref|ZP_06492171.1| DNA repair protein RadC [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 225
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 49/131 (37%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
H+ H R R++ L +G AL+ E+L + + + +D A+ LL + L +
Sbjct: 2 HIHDWPTHERPREKLLARGATALSDAELLAIFVGSGLRGQDAVQTARDLLHQHGPLRLLL 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
P L + +G A +L + R L + + L+ + +
Sbjct: 62 DRPAKALTRLPGLGPASACKLAAALELAHRHLMSALERGEALSDPPSVGRYFSQRLRARA 121
Query: 135 ANNFAYCFSIN 145
FA F N
Sbjct: 122 YEVFAVLFLDN 132
>gi|238898968|ref|YP_002924650.1| associated with replication fork, possible DNA repair protein
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466728|gb|ACQ68502.1| associated with replication fork, possible DNA repair protein
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 222
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L + L P +A+ L+ F +L + A L
Sbjct: 10 PREKLLKFGASALTDSELLSIFLRTGTPGLHVSEMAEKLIVEFGSLYHLMSADYETLSAQ 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+GK +++ + + R +N + + + ++ ++ F F
Sbjct: 70 KGMGKSKFTQIQAILELANRCFYSNLLHENVMLNSKITQKFLQNLLSHRDREVFLVLFLN 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|221065434|ref|ZP_03541539.1| DNA repair protein RadC [Comamonas testosteroni KF-1]
gi|220710457|gb|EED65825.1| DNA repair protein RadC [Comamonas testosteroni KF-1]
Length = 230
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL------KRFATLGGVFGAPL 78
R++ Q+G AL+ E+L +IL + K +A+ LL + L G+ A
Sbjct: 12 PREKLAQRGAAALSDAELLAVILRTGMAGKTVLQMAQELLELPGDRQATGGLAGLLAADY 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L + +G EL V ++R ++ + + ++ H + F
Sbjct: 72 QALATVKGLGPAKRAELMAVLELARRATAQQLREREVFSSPEAVKHYLQLHLAARPHEVF 131
Query: 139 AYCFSI 144
A F
Sbjct: 132 AVLFLD 137
>gi|289666330|ref|ZP_06487911.1| DNA repair protein RadC [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 213
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 49/131 (37%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
H+ H R R++ L +G AL+ E+L + + + +D A+ LL + L +
Sbjct: 2 HIHDWPTHERPREKLLARGATALSDAELLAIFVGSGLRGQDAVQTARDLLHQHGPLRLLL 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
P L + +G A +L + R L + + L+ + +
Sbjct: 62 DRPAKALTRLPGLGPASACKLAAALELAHRHLMSALERGEALSDPPSVGRYFSQRLRARA 121
Query: 135 ANNFAYCFSIN 145
FA F N
Sbjct: 122 YEVFAVLFLDN 132
>gi|268325239|emb|CBH38827.1| probable DNA repair protein radC homolog [uncultured archaeon]
Length = 329
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 5/147 (3%)
Query: 2 EDFRMSKAPSKDSHLDYIGHH----NRLRDRFLQKGENALAYYEILELILFRLIPRKDTK 57
K + R R++ L G + E+L + L IP K
Sbjct: 72 AMAAYKKEWITSLRPTHQLKRLRKEERPREKLL-YGYSKPTTAELLAIFLRSGIPGKSVI 130
Query: 58 SIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLT 117
IA LL +F + G+F A L +I +G ++K V ++ LK + +
Sbjct: 131 VIANDLLTQFGGVKGIFEADKTELMDIEGVGVAKVAQIKAVQALAEEYLKESMKSVSKVR 190
Query: 118 PGQPCLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 191 NSKEVFDYLYLTMRDLKIEIFKVIFLD 217
>gi|83719104|ref|YP_441337.1| DNA repair protein RadC [Burkholderia thailandensis E264]
gi|123537846|sp|Q2T0G2|Y781_BURTA RecName: Full=UPF0758 protein BTH_I0781
gi|83652929|gb|ABC36992.1| DNA repair protein RadC [Burkholderia thailandensis E264]
Length = 262
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A
Sbjct: 47 RDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLTRFGSLRALLDAAPDDF 106
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + IG L V ++R L + + + + F
Sbjct: 107 KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCL 166
Query: 142 FSI 144
F
Sbjct: 167 FLD 169
>gi|26991960|ref|NP_747385.1| DNA repair protein RadC [Pseudomonas putida KT2440]
gi|37999603|sp|Q88C97|Y5284_PSEPK RecName: Full=UPF0758 protein PP_5284
gi|24987089|gb|AAN70849.1|AE016729_7 DNA repair protein RadC [Pseudomonas putida KT2440]
Length = 226
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 46/122 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ LQ+G +L E+L + L + + +++ LL +F +L + A
Sbjct: 10 ERPREKLLQRGAGSLTDTELLAVFLGSGVRGCNVVELSRGLLVKFGSLRRLLEADREAFV 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ + +R L + + + ++ + + F F
Sbjct: 70 GELGLGPVRYSQLQALLEIGRRHLATSIERESAMDSPAAVRRYLKAMLRHEASEVFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|305665155|ref|YP_003861442.1| putative DNA repair protein [Maribacter sp. HTCC2170]
gi|88709907|gb|EAR02139.1| putative DNA repair protein [Maribacter sp. HTCC2170]
Length = 232
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 52/141 (36%), Gaps = 2/141 (1%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M + P+ + + + ++ R++ L KG++ L+ E++ +++ + ++K +L
Sbjct: 1 MQEKPT-SFSIKHWSNDDKPREKLLHKGKSVLSDAELIAILIGSGSRNESAVELSKRILA 59
Query: 66 R-FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
L + + L + IG+ A+ + +R ++ +
Sbjct: 60 SVDNNLNDLGRLSIKQLMQFKGIGEAKAITIVAALEIGRRRRGEEGQKIAKISSSRDVFE 119
Query: 125 SVERHYPMKNANNFAYCFSIN 145
++ F + N
Sbjct: 120 LLQPSMGELPHEEFWIVYLNN 140
>gi|148550394|ref|YP_001270496.1| DNA repair protein RadC [Pseudomonas putida F1]
gi|148514452|gb|ABQ81312.1| DNA repair protein RadC [Pseudomonas putida F1]
Length = 235
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ LQ+G +L E+L + L + ++ +++ LL +F +L + A
Sbjct: 19 ERPREKLLQRGAGSLTDTELLAVFLGSGVRGRNVVELSRGLLVKFGSLRRLLEADREAFV 78
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ + +R L + + + ++ + + F F
Sbjct: 79 GELGLGPVRYSQLQALLEIGRRHLATSIERESAMDSPAAVRRYLKAMLRHEASEVFGCLF 138
Query: 143 SI 144
Sbjct: 139 LD 140
>gi|329296438|ref|ZP_08253774.1| hypothetical protein Pstas_07243 [Plautia stali symbiont]
Length = 195
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 44/121 (36%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ G AL+ E+L + L +A+ +L F +L + A L +I
Sbjct: 6 PREKLTLLGAEALSDAELLAIFLRTGTRGNSVMGLARLMLNEFGSLYRIMTASKEELGQI 65
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L ++ +R + + + + Q ++ + F F
Sbjct: 66 KGVGSAKMTQLHAIAELGRRFFASQLARENVMENPQVTRHYLQSVLAHQEREIFMALFLD 125
Query: 145 N 145
N
Sbjct: 126 N 126
>gi|289578046|ref|YP_003476673.1| DNA repair protein RadC [Thermoanaerobacter italicus Ab9]
gi|297544317|ref|YP_003676619.1| DNA repair protein RadC [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|289527759|gb|ADD02111.1| DNA repair protein RadC [Thermoanaerobacter italicus Ab9]
gi|296842092|gb|ADH60608.1| DNA repair protein RadC [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 226
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 50/128 (39%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ + R R+R ++ G L+ E++ +I+ R+ ++A+ L+ L + +
Sbjct: 3 KDLPYEERPRERLIKHGAQVLSNAELIAIIIGTGSKRESAITLAQRLIMEDKGLKFIVDS 62
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L I IG A++LK +R++ + S +T + + +
Sbjct: 63 SVEKLASIKGIGIAKAVKLKAAVELGRRMMLSTGSDSFTITSPEDVISLMMDEMRYLTKE 122
Query: 137 NFAYCFSI 144
F
Sbjct: 123 YFKVIMLN 130
>gi|271498728|ref|YP_003331753.1| DNA repair protein RadC [Dickeya dadantii Ech586]
gi|270342283|gb|ACZ75048.1| DNA repair protein RadC [Dickeya dadantii Ech586]
Length = 221
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ + G AL+ E+L + L + +A++LL +F +L + A +
Sbjct: 9 PREKLMSLGVEALSDAELLAIFLRTGVEGMHVMELAQSLLAQFGSLYRLMTADWAAFNAV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ V+ ++R+ ++ + + + ++ + F F
Sbjct: 69 RGVGISKYAQLQAVAELARRLFSSHLAREDAMLNPDVTQQYLQLLLAHQEREVFLVMFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|326405093|ref|YP_004285175.1| hypothetical protein ACMV_29460 [Acidiphilium multivorum AIU301]
gi|325051955|dbj|BAJ82293.1| hypothetical protein ACMV_29460 [Acidiphilium multivorum AIU301]
Length = 266
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Query: 7 SKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR 66
+ AP + GH R+R++ L +G ALA YE+LE++LF + DTK +AKAL+ R
Sbjct: 33 ADAPFSSTGPQ--GHRGRMREKLLGRGAEALADYELLEMLLFLAFKKGDTKPLAKALINR 90
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
F + V A L +G+ +KLV ++ R+ +A + L + + +
Sbjct: 91 FGSYAAVLAAEPDALFATPGLGQHSVAAIKLVQASAIRLARAELADAPVLNNWERLIDYL 150
Query: 127 ERHYPMKNANNFAYCFSIN 145
+ F + N
Sbjct: 151 TIAMAREPVEQFRVIYLDN 169
>gi|317494719|ref|ZP_07953131.1| DNA repair protein RadC [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917321|gb|EFV38668.1| DNA repair protein RadC [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 228
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 50/121 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G+ +L+ E+L + L I + +++ L++ F ++ + A +
Sbjct: 16 PREKLLSLGKESLSDQELLAIFLRTGIKGTNVMALSSQLIREFGSIYALMQADYDIFCTK 75
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ V S+R L + + +T + + ++ + F F
Sbjct: 76 PGLGISRYAQLQAVMELSKRFLHRQLTEQSVITRPELTALYLQNVFSGYEREAFFVLFLD 135
Query: 145 N 145
N
Sbjct: 136 N 136
>gi|82779128|ref|YP_405477.1| DNA repair protein RadC [Shigella dysenteriae Sd197]
gi|81243276|gb|ABB63986.1| DNA repair protein [Shigella dysenteriae Sd197]
Length = 224
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 131
>gi|229032108|ref|ZP_04188086.1| DNA repair protein radC [Bacillus cereus AH1271]
gi|228729198|gb|EEL80196.1| DNA repair protein radC [Bacillus cereus AH1271]
Length = 240
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 26 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHHFDGLRMLKDATLEELV 85
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 86 SIHGVGIAKAAQLIAAFELGRRMVRLEYQNRYSIRSPEDCARYMMEEMRFLQQEHFVCLY 145
Query: 143 SI 144
Sbjct: 146 LN 147
>gi|293413072|ref|ZP_06655740.1| radC [Escherichia coli B354]
gi|291468719|gb|EFF11212.1| radC [Escherichia coli B354]
Length = 224
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSSV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 131
>gi|300927932|ref|ZP_07143491.1| DNA repair protein RadC [Escherichia coli MS 187-1]
gi|300464024|gb|EFK27517.1| DNA repair protein RadC [Escherichia coli MS 187-1]
Length = 224
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 131
>gi|104784328|ref|YP_610826.1| DNA repair protein RadC [Pseudomonas entomophila L48]
gi|122401255|sp|Q1I2U3|Y5431_PSEE4 RecName: Full=UPF0758 protein PSEEN5431
gi|95113315|emb|CAK18043.1| DNA repair protein radC [Pseudomonas entomophila L48]
Length = 226
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 46/122 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G +L+ E+L + L + ++ +A+ LL +F L V A
Sbjct: 10 ERPREKLLNRGAGSLSDAELLAVFLGSGVKGRNVLELARGLLVKFGGLRQVLEADRQAFL 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ + +R L + + + ++ + + F F
Sbjct: 70 GELGLGPVRYSQLQALLEIGRRNLAMSIERESVMDNPLAVRRYLKAMLRHEASEVFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|47566644|ref|ZP_00237466.1| DNA repair protein RadC [Bacillus cereus G9241]
gi|228987706|ref|ZP_04147817.1| DNA repair protein radC [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|47556674|gb|EAL15006.1| DNA repair protein RadC [Bacillus cereus G9241]
gi|228771980|gb|EEM20435.1| DNA repair protein radC [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 225
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCARYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|172048651|sp|A5WB02|Y5194_PSEP1 RecName: Full=UPF0758 protein Pput_5194
Length = 226
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ LQ+G +L E+L + L + ++ +++ LL +F +L + A
Sbjct: 10 ERPREKLLQRGAGSLTDTELLAVFLGSGVRGRNVVELSRGLLVKFGSLRRLLEADREAFV 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G +L+ + +R L + + + ++ + + F F
Sbjct: 70 GELGLGPVRYSQLQALLEIGRRHLATSIERESAMDSPAAVRRYLKAMLRHEASEVFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|167622369|ref|YP_001672663.1| DNA repair protein RadC [Shewanella halifaxensis HAW-EB4]
gi|189029403|sp|B0TQL1|Y429_SHEHH RecName: Full=UPF0758 protein Shal_0429
gi|167352391|gb|ABZ75004.1| DNA repair protein RadC [Shewanella halifaxensis HAW-EB4]
Length = 225
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G L+ E+L ++L + +A+ ++ F L G+ A + +
Sbjct: 12 PREKLLNQGVKQLSDAELLAVLLRVGLKGLSAVELARTMINEFGGLRGLLAASQTQVCRL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +++ RI + N K L+ + R + FA
Sbjct: 72 DGIGPVKFAQMQAAVELGTRISQENLQRGKILSDPDLTRDYLMRQLSDRAYEVFAILLLD 131
>gi|163942202|ref|YP_001647086.1| DNA repair protein RadC [Bacillus weihenstephanensis KBAB4]
gi|229169196|ref|ZP_04296910.1| DNA repair protein radC [Bacillus cereus AH621]
gi|229485544|sp|A9VIS8|Y4299_BACWK RecName: Full=UPF0758 protein BcerKBAB4_4299
gi|163864399|gb|ABY45458.1| DNA repair protein RadC [Bacillus weihenstephanensis KBAB4]
gi|228614262|gb|EEK71373.1| DNA repair protein radC [Bacillus cereus AH621]
Length = 225
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + +++ +L F L + A L +
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLTLSDNILHHFDGLRMLKDATLEEMM 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCASYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|300948028|ref|ZP_07162169.1| DNA repair protein RadC [Escherichia coli MS 116-1]
gi|300954468|ref|ZP_07166918.1| DNA repair protein RadC [Escherichia coli MS 175-1]
gi|300318547|gb|EFJ68331.1| DNA repair protein RadC [Escherichia coli MS 175-1]
gi|300452423|gb|EFK16043.1| DNA repair protein RadC [Escherichia coli MS 116-1]
Length = 224
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 131
>gi|228935773|ref|ZP_04098585.1| DNA repair protein radC [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228823830|gb|EEM69650.1| DNA repair protein radC [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 225
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELI 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGVAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|82546001|ref|YP_409948.1| DNA repair protein RadC [Shigella boydii Sb227]
gi|293463962|ref|ZP_06664376.1| DNA repair protein RadC [Escherichia coli B088]
gi|300822408|ref|ZP_07102548.1| DNA repair protein RadC [Escherichia coli MS 119-7]
gi|301325320|ref|ZP_07218827.1| DNA repair protein RadC [Escherichia coli MS 78-1]
gi|301644304|ref|ZP_07244306.1| DNA repair protein RadC [Escherichia coli MS 146-1]
gi|331644356|ref|ZP_08345485.1| DNA repair protein RadC [Escherichia coli H736]
gi|331655270|ref|ZP_08356269.1| DNA repair protein RadC [Escherichia coli M718]
gi|331675118|ref|ZP_08375875.1| DNA repair protein RadC [Escherichia coli TA280]
gi|331679729|ref|ZP_08380399.1| DNA repair protein RadC [Escherichia coli H591]
gi|81247412|gb|ABB68120.1| DNA repair protein [Shigella boydii Sb227]
gi|291321594|gb|EFE61030.1| DNA repair protein RadC [Escherichia coli B088]
gi|300525055|gb|EFK46124.1| DNA repair protein RadC [Escherichia coli MS 119-7]
gi|300847847|gb|EFK75607.1| DNA repair protein RadC [Escherichia coli MS 78-1]
gi|301077342|gb|EFK92148.1| DNA repair protein RadC [Escherichia coli MS 146-1]
gi|315618659|gb|EFU99245.1| DNA repair protein radC [Escherichia coli 3431]
gi|323160754|gb|EFZ46690.1| DNA repair protein radC [Escherichia coli E128010]
gi|331036650|gb|EGI08876.1| DNA repair protein RadC [Escherichia coli H736]
gi|331047285|gb|EGI19363.1| DNA repair protein RadC [Escherichia coli M718]
gi|331068027|gb|EGI39425.1| DNA repair protein RadC [Escherichia coli TA280]
gi|331072901|gb|EGI44226.1| DNA repair protein RadC [Escherichia coli H591]
gi|332089352|gb|EGI94456.1| DNA repair protein radC [Shigella boydii 3594-74]
gi|332104944|gb|EGJ08290.1| DNA repair protein RadC [Shigella sp. D9]
Length = 224
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 131
>gi|187251767|ref|YP_001876249.1| DNA repair protein RadC [Elusimicrobium minutum Pei191]
gi|186971927|gb|ACC98912.1| DNA repair protein RadC [Elusimicrobium minutum Pei191]
Length = 228
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 58/133 (43%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ + GH R++++F + G + +E LEL+L IPRKDTK IA L+K+F +L
Sbjct: 2 KEKEKPSHTGHRERIKNKFAKNGLDGFMEHETLELLLTYSIPRKDTKPIAWELIKKFGSL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
GV A L E+ +GK AL LK+V ++ + + +
Sbjct: 62 SGVLDASPQELMEVKGVGKETALFLKVVRGVYKKYAFSKLKKADIIRTPEDVANYCRASL 121
Query: 131 PMKNANNFAYCFS 143
F +
Sbjct: 122 AEHKDEVFEVIYL 134
>gi|226952864|ref|ZP_03823328.1| DNA repair protein [Acinetobacter sp. ATCC 27244]
gi|226836375|gb|EEH68758.1| DNA repair protein [Acinetobacter sp. ATCC 27244]
Length = 244
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R+R L +G +L+ E+L + L + +A+ L++ F L +F A L
Sbjct: 12 WPEQERPRERLLLQGAQSLSDAELLAIFLRSGSKQHSAVELARILIQHFGGLNPIFDASL 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYPMKNANN 137
L + N I +L V +R L ++ ++ L L + +
Sbjct: 72 EDLSQFNGIASTKYAQLMAVKELGRRYLNNHFQQQRLCLDTSSLVLDYLRYELMGEKQEV 131
Query: 138 FAYCFSI 144
FA
Sbjct: 132 FAVLCLD 138
>gi|209921109|ref|YP_002295193.1| DNA repair protein RadC [Escherichia coli SE11]
gi|300815123|ref|ZP_07095348.1| DNA repair protein RadC [Escherichia coli MS 107-1]
gi|209914368|dbj|BAG79442.1| DNA repair protein [Escherichia coli SE11]
gi|300532015|gb|EFK53077.1| DNA repair protein RadC [Escherichia coli MS 107-1]
Length = 224
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 131
>gi|309784385|ref|ZP_07679024.1| DNA repair protein radC [Shigella dysenteriae 1617]
gi|172046622|sp|Q329L9|YICR_SHIDS RecName: Full=UPF0758 protein yicR
gi|308927892|gb|EFP73360.1| DNA repair protein radC [Shigella dysenteriae 1617]
Length = 222
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|291485217|dbj|BAI86292.1| DNA repair protein RadC [Bacillus subtilis subsp. natto BEST195]
Length = 231
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 44/123 (35%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L+ G LA +E+L ++L + ++ LL+ F L + A + L
Sbjct: 16 KEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEEL 75
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG A+++ RI K + + V +F
Sbjct: 76 SSIPGIGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCL 135
Query: 142 FSI 144
+
Sbjct: 136 YLN 138
>gi|253771521|ref|YP_003034352.1| DNA repair protein RadC [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254163566|ref|YP_003046674.1| DNA repair protein RadC [Escherichia coli B str. REL606]
gi|297521446|ref|ZP_06939832.1| DNA repair protein RadC [Escherichia coli OP50]
gi|242379162|emb|CAQ33964.1| hypothetical protein B21_03447 [Escherichia coli BL21(DE3)]
gi|253322565|gb|ACT27167.1| DNA repair protein RadC [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975467|gb|ACT41138.1| DNA repair protein RadC [Escherichia coli B str. REL606]
gi|253979623|gb|ACT45293.1| DNA repair protein RadC [Escherichia coli BL21(DE3)]
Length = 222
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|190572468|ref|YP_001970313.1| DNA repair protein RadC [Stenotrophomonas maltophilia K279a]
gi|229485565|sp|B2FJW1|Y399_STRMK RecName: Full=UPF0758 protein Smlt0399
gi|190010390|emb|CAQ43998.1| putative DNA repair protein RadC [Stenotrophomonas maltophilia
K279a]
Length = 234
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 1/130 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ + +G AL+ E+L L L +D A+ LL+ L +
Sbjct: 4 HDWPEQERPREKLIARGPTALSDAELLALFLGSGFGGRDAVQTARDLLQAHGPLRVLLDR 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFL-TPGQPCLISVERHYPMKNA 135
P L + +G + L + R L A + + ++ +
Sbjct: 64 PAAELARLPGLGPARSCTLAAGLELAHRYLAAELEHGEAVGNNPAAVGRYLQHRLRGQAR 123
Query: 136 NNFAYCFSIN 145
F F N
Sbjct: 124 EVFMALFLDN 133
>gi|157163119|ref|YP_001460437.1| DNA repair protein RadC [Escherichia coli HS]
gi|166918666|sp|A8A6A0|YICR_ECOHS RecName: Full=UPF0758 protein yicR
gi|157068799|gb|ABV08054.1| DNA repair protein RadC [Escherichia coli HS]
Length = 222
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R K L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREKSPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|15804179|ref|NP_290218.1| DNA repair protein RadC [Escherichia coli O157:H7 EDL933]
gi|15833767|ref|NP_312540.1| DNA repair protein RadC [Escherichia coli O157:H7 str. Sakai]
gi|26250284|ref|NP_756324.1| DNA repair protein RadC [Escherichia coli CFT073]
gi|91213155|ref|YP_543141.1| DNA repair protein RadC [Escherichia coli UTI89]
gi|117625910|ref|YP_859233.1| DNA repair protein RadC [Escherichia coli APEC O1]
gi|161485825|ref|NP_709417.3| DNA repair protein RadC [Shigella flexneri 2a str. 301]
gi|161486390|ref|NP_839257.2| DNA repair protein RadC [Shigella flexneri 2a str. 2457T]
gi|227883806|ref|ZP_04001611.1| DNA repair protein RadC [Escherichia coli 83972]
gi|237703409|ref|ZP_04533890.1| DNA repair protein radC [Escherichia sp. 3_2_53FAA]
gi|254038838|ref|ZP_04872890.1| DNA repair protein radC [Escherichia sp. 1_1_43]
gi|291285009|ref|YP_003501827.1| DNA repair protein [Escherichia coli O55:H7 str. CB9615]
gi|300898572|ref|ZP_07116903.1| DNA repair protein RadC [Escherichia coli MS 198-1]
gi|300907679|ref|ZP_07125307.1| DNA repair protein RadC [Escherichia coli MS 84-1]
gi|300939237|ref|ZP_07153917.1| DNA repair protein RadC [Escherichia coli MS 21-1]
gi|300983482|ref|ZP_07176629.1| DNA repair protein RadC [Escherichia coli MS 200-1]
gi|300984962|ref|ZP_07177214.1| DNA repair protein RadC [Escherichia coli MS 45-1]
gi|301018967|ref|ZP_07183190.1| DNA repair protein RadC [Escherichia coli MS 69-1]
gi|301047427|ref|ZP_07194507.1| DNA repair protein RadC [Escherichia coli MS 185-1]
gi|301303871|ref|ZP_07209990.1| DNA repair protein RadC [Escherichia coli MS 124-1]
gi|309797621|ref|ZP_07692009.1| DNA repair protein RadC [Escherichia coli MS 145-7]
gi|312972077|ref|ZP_07786251.1| DNA repair protein radC [Escherichia coli 1827-70]
gi|331649453|ref|ZP_08350539.1| DNA repair protein RadC [Escherichia coli M605]
gi|12518394|gb|AAG58782.1|AE005591_6 DNA repair protein [Escherichia coli O157:H7 str. EDL933]
gi|26110714|gb|AAN82898.1|AE016769_13 DNA repair protein radC [Escherichia coli CFT073]
gi|13363988|dbj|BAB37936.1| DNA repair protein [Escherichia coli O157:H7 str. Sakai]
gi|91074729|gb|ABE09610.1| DNA repair protein [Escherichia coli UTI89]
gi|115515034|gb|ABJ03109.1| DNA repair protein RadC [Escherichia coli APEC O1]
gi|209754638|gb|ACI75631.1| DNA repair protein [Escherichia coli]
gi|209754640|gb|ACI75632.1| DNA repair protein [Escherichia coli]
gi|209754642|gb|ACI75633.1| DNA repair protein [Escherichia coli]
gi|209754644|gb|ACI75634.1| DNA repair protein [Escherichia coli]
gi|209754646|gb|ACI75635.1| DNA repair protein [Escherichia coli]
gi|226838803|gb|EEH70830.1| DNA repair protein radC [Escherichia sp. 1_1_43]
gi|226902673|gb|EEH88932.1| DNA repair protein radC [Escherichia sp. 3_2_53FAA]
gi|227839084|gb|EEJ49550.1| DNA repair protein RadC [Escherichia coli 83972]
gi|281603001|gb|ADA75985.1| DNA repair protein [Shigella flexneri 2002017]
gi|290764882|gb|ADD58843.1| DNA repair protein [Escherichia coli O55:H7 str. CB9615]
gi|300300701|gb|EFJ57086.1| DNA repair protein RadC [Escherichia coli MS 185-1]
gi|300306946|gb|EFJ61466.1| DNA repair protein RadC [Escherichia coli MS 200-1]
gi|300357758|gb|EFJ73628.1| DNA repair protein RadC [Escherichia coli MS 198-1]
gi|300399461|gb|EFJ82999.1| DNA repair protein RadC [Escherichia coli MS 69-1]
gi|300400615|gb|EFJ84153.1| DNA repair protein RadC [Escherichia coli MS 84-1]
gi|300408242|gb|EFJ91780.1| DNA repair protein RadC [Escherichia coli MS 45-1]
gi|300455879|gb|EFK19372.1| DNA repair protein RadC [Escherichia coli MS 21-1]
gi|300840834|gb|EFK68594.1| DNA repair protein RadC [Escherichia coli MS 124-1]
gi|308118808|gb|EFO56070.1| DNA repair protein RadC [Escherichia coli MS 145-7]
gi|310334454|gb|EFQ00659.1| DNA repair protein radC [Escherichia coli 1827-70]
gi|315254024|gb|EFU33992.1| DNA repair protein RadC [Escherichia coli MS 85-1]
gi|315285375|gb|EFU44820.1| DNA repair protein RadC [Escherichia coli MS 110-3]
gi|315292975|gb|EFU52327.1| DNA repair protein RadC [Escherichia coli MS 153-1]
gi|323189454|gb|EFZ74735.1| DNA repair protein radC [Escherichia coli RN587/1]
gi|324008143|gb|EGB77362.1| DNA repair protein RadC [Escherichia coli MS 57-2]
gi|324012728|gb|EGB81947.1| DNA repair protein RadC [Escherichia coli MS 60-1]
gi|325499444|gb|EGC97303.1| DNA repair protein RadC [Escherichia fergusonii ECD227]
gi|331041951|gb|EGI14095.1| DNA repair protein RadC [Escherichia coli M605]
Length = 224
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 131
>gi|325292997|ref|YP_004278861.1| DNA repair protein RadC [Agrobacterium sp. H13-3]
gi|325060850|gb|ADY64541.1| DNA repair protein RadC [Agrobacterium sp. H13-3]
Length = 281
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 66/151 (43%), Positives = 88/151 (58%), Gaps = 7/151 (4%)
Query: 4 FRMSKAPSKDSHL-----DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKS 58
+ S+ P+ + Y GH +RLR R+ G+ ALA YE+LEL+LFRLIPR+DTK
Sbjct: 43 KKTSEHPAAVAEPEAEIAHYHGHRDRLRARYRDGGDTALADYELLELLLFRLIPRRDTKP 102
Query: 59 IAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTP 118
IAKAL+ RF TLGGV GAPL LLQE+ +G+ VAL+LKLV+ SQR+LK K+ L
Sbjct: 103 IAKALIARFGTLGGVLGAPLPLLQEVKGVGEAVALDLKLVASVSQRMLKGEIRNKQILGS 162
Query: 119 GQPCLISVERHYPMKNANNFAYCFSI--NII 147
+ + F F N++
Sbjct: 163 WSSVIDYCHAAMAHETREQFRILFLDKRNVL 193
>gi|218691922|ref|YP_002400134.1| DNA repair protein RadC [Escherichia coli ED1a]
gi|254789651|sp|B7N279|YICR_ECO81 RecName: Full=UPF0758 protein yicR
gi|218429486|emb|CAR10450.2| protein associated with replication fork, putative DNA repair
protein [Escherichia coli ED1a]
gi|222035346|emb|CAP78091.1| DNA repair protein radC [Escherichia coli LF82]
gi|281180684|dbj|BAI57014.1| DNA repair protein [Escherichia coli SE15]
gi|312948199|gb|ADR29026.1| DNA repair protein RadC [Escherichia coli O83:H1 str. NRG 857C]
Length = 222
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|301028397|ref|ZP_07191643.1| DNA repair protein RadC [Escherichia coli MS 196-1]
gi|299878508|gb|EFI86719.1| DNA repair protein RadC [Escherichia coli MS 196-1]
Length = 222
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|163750748|ref|ZP_02157984.1| DNA repair protein RadC [Shewanella benthica KT99]
gi|161329592|gb|EDQ00584.1| DNA repair protein RadC [Shewanella benthica KT99]
Length = 225
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 43/120 (35%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
RD+ L G L+ E+L ++L + +A+ L+ F L + A + ++
Sbjct: 12 PRDKLLSHGVGQLSDSELLAVVLRNGLKGLSAVELARNLIAEFGGLRELVKASQQEVCKL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +++ + S RI K L+ + R + FA
Sbjct: 72 PGMGPVKFAQIQAAAELSTRISAEKLKRGKILSDPDLTRDYLMRQLQDRAYEVFAILLLD 131
>gi|188578899|ref|YP_001915828.1| DNA repair protein RadC [Xanthomonas oryzae pv. oryzae PXO99A]
gi|172044625|sp|Q5H5M1|Y495_XANOR RecName: Full=UPF0758 protein XOO0495
gi|238689548|sp|B2SS21|Y2919_XANOP RecName: Full=UPF0758 protein PXO_02919
gi|188523351|gb|ACD61296.1| DNA repair protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 225
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 50/131 (38%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
H+ + R R++ L +G AL+ E+L + + + +D A+ LL R L +
Sbjct: 2 HIHDWPTNERPREKLLARGATALSDAELLAIFVGSGLRGQDAVQTARDLLHRHGPLRPLL 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
P L+ + +G A +L + R L + + L+ + +
Sbjct: 62 DRPAKALERLPGLGPASACKLAAALELAHRHLMSALERGEALSDPPSVGRYFSQRLRARA 121
Query: 135 ANNFAYCFSIN 145
FA F N
Sbjct: 122 YEVFAVLFLDN 132
>gi|229186695|ref|ZP_04313854.1| DNA repair protein radC [Bacillus cereus BGSC 6E1]
gi|228596798|gb|EEK54459.1| DNA repair protein radC [Bacillus cereus BGSC 6E1]
Length = 225
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|320179974|gb|EFW54916.1| DNA repair protein RadC [Shigella boydii ATCC 9905]
Length = 222
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|187731500|ref|YP_001882335.1| DNA repair protein RadC [Shigella boydii CDC 3083-94]
gi|238691678|sp|B2TTV2|YICR_SHIB3 RecName: Full=UPF0758 protein yicR
gi|187428492|gb|ACD07766.1| DNA repair protein RadC [Shigella boydii CDC 3083-94]
Length = 222
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|193063880|ref|ZP_03044967.1| DNA repair protein RadC [Escherichia coli E22]
gi|218697359|ref|YP_002405026.1| DNA repair protein RadC [Escherichia coli 55989]
gi|256021358|ref|ZP_05435223.1| DNA repair protein RadC [Shigella sp. D9]
gi|256025632|ref|ZP_05439497.1| DNA repair protein RadC [Escherichia sp. 4_1_40B]
gi|260846597|ref|YP_003224375.1| protein associated with replication fork [Escherichia coli O103:H2
str. 12009]
gi|307140336|ref|ZP_07499692.1| DNA repair protein RadC [Escherichia coli H736]
gi|172046624|sp|Q31UY8|YICR_SHIBS RecName: Full=UPF0758 protein yicR
gi|254789650|sp|B7L757|YICR_ECO55 RecName: Full=UPF0758 protein yicR
gi|192930595|gb|EDV83202.1| DNA repair protein RadC [Escherichia coli E22]
gi|218354091|emb|CAV00643.1| protein associated with replication fork, putative DNA repair
protein [Escherichia coli 55989]
gi|257761744|dbj|BAI33241.1| protein associated with replication fork [Escherichia coli O103:H2
str. 12009]
gi|320176303|gb|EFW51363.1| DNA repair protein RadC [Shigella dysenteriae CDC 74-1112]
gi|320186822|gb|EFW61542.1| DNA repair protein RadC [Shigella flexneri CDC 796-83]
gi|323182666|gb|EFZ68069.1| DNA repair protein radC [Escherichia coli 1357]
gi|323934817|gb|EGB31199.1| DNA repair protein RadC [Escherichia coli E1520]
gi|324116023|gb|EGC09949.1| DNA repair protein RadC [Escherichia coli E1167]
Length = 222
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|291086416|ref|ZP_06571500.1| DNA repair protein RadC [Citrobacter youngae ATCC 29220]
gi|291068199|gb|EFE06308.1| DNA repair protein RadC [Citrobacter youngae ATCC 29220]
Length = 215
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G +L+ E+L L L I KD ++AK L++ F +L G+ A +
Sbjct: 3 PREKLLAQGAGSLSDVELLALFLRTGILGKDVLTLAKELIQHFGSLYGLLSADYMAFSHV 62
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +LK ++ ++R ++ L + ++ + F F
Sbjct: 63 QGIGLAKYAQLKGIAELARRYHNVRVIEERALLSPEMARDFLQSQLAQEEREIFLVIFMD 122
>gi|193070384|ref|ZP_03051326.1| DNA repair protein RadC [Escherichia coli E110019]
gi|192956323|gb|EDV86784.1| DNA repair protein RadC [Escherichia coli E110019]
Length = 222
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLESFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|260599935|ref|YP_003212506.1| DNA repair protein radC [Cronobacter turicensis z3032]
gi|260219112|emb|CBA34467.1| DNA repair protein radC homolog [Cronobacter turicensis z3032]
Length = 220
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ ++ G L+ E+L + L P D +AK LL F +L G+ A + ++I
Sbjct: 8 PREKLMRYGAADLSDEELLAIFLRTGTPGMDVMKLAKRLLAHFGSLYGLLSADIAPFRQI 67
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++L+ + ++R ++ + + L +E + F F
Sbjct: 68 GGVGMAKYVQLRAIGELARRYYRSRPNEETALLSPTITREFLESQLAEQEREMFLVIFLD 127
>gi|268593307|ref|ZP_06127528.1| DNA repair protein RadC [Providencia rettgeri DSM 1131]
gi|291311004|gb|EFE51457.1| DNA repair protein RadC [Providencia rettgeri DSM 1131]
Length = 239
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ E+L + L + +AK L++ F ++ + A L+
Sbjct: 27 PREKLLAYGAAALSDAELLAIFLRTGSQGEPVLQLAKRLIQEFGSVYLLLQADYEKLKHC 86
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ VS ++R + + +T + + + + F F
Sbjct: 87 KGMGSCKFTQLQAVSELARRFFSEQFLYEDVMTGPEQLKAKLLDLFAGQEREVFVVIFLN 146
Query: 145 N 145
N
Sbjct: 147 N 147
>gi|91974634|ref|YP_567293.1| DNA repair protein RadC [Rhodopseudomonas palustris BisB5]
gi|91681090|gb|ABE37392.1| DNA repair protein RadC [Rhodopseudomonas palustris BisB5]
Length = 239
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 68/132 (51%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
Y GH RLR+RF + G +AL+ YE+LE++LFR +PR+D K +AKAL+ RF +
Sbjct: 15 AEAPHYHGHRERLRERFREAGADALSDYELLEMVLFRALPRRDVKPLAKALIARFGSFAE 74
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
AP L+E++ +G+ E+KLV+ A+ R+ K + L+ +
Sbjct: 75 TMHAPEPRLREVSGLGEAAITEIKLVAAAAARVTKGQVKSRTVLSSWSAVIDYCRTTMAF 134
Query: 133 KNANNFAYCFSI 144
+ F F
Sbjct: 135 ADKEQFRILFLD 146
>gi|323944091|gb|EGB40171.1| DNA repair protein RadC [Escherichia coli H120]
Length = 222
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|326318501|ref|YP_004236173.1| DNA repair protein RadC [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323375337|gb|ADX47606.1| DNA repair protein RadC [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 237
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 13/135 (9%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-------------RFAT 69
R R+R L +G ++L+ E+L ++L I K +A+ LL F
Sbjct: 10 ARPRERLLARGPSSLSDTELLAILLRTGIVGKGVMQMAQELLSPALPDPATGALRGGFGG 69
Query: 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
+ G+ A L+ I +G L V ++R+L ++ + ++ H
Sbjct: 70 IRGLLQADADDLKRIKGLGPAKRTSLVAVLELARRMLVQTLPKRELFHSPRAVRDYLQLH 129
Query: 130 YPMKNANNFAYCFSI 144
K F+ F
Sbjct: 130 LGGKPHEVFSVLFLD 144
>gi|110643879|ref|YP_671609.1| DNA repair protein RadC [Escherichia coli 536]
gi|170018132|ref|YP_001723086.1| DNA repair protein RadC [Escherichia coli ATCC 8739]
gi|110345471|gb|ABG71708.1| DNA repair protein RadC [Escherichia coli 536]
gi|169753060|gb|ACA75759.1| DNA repair protein RadC [Escherichia coli ATCC 8739]
gi|307555737|gb|ADN48512.1| DNA repair protein [Escherichia coli ABU 83972]
Length = 214
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 2 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 62 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 121
>gi|320666351|gb|EFX33350.1| hypothetical protein ECOSU61_04303 [Escherichia coli O157:H7 str.
LSU-61]
Length = 222
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|163759426|ref|ZP_02166511.1| DNA repair protein RadC [Hoeflea phototrophica DFL-43]
gi|162283023|gb|EDQ33309.1| DNA repair protein RadC [Hoeflea phototrophica DFL-43]
Length = 290
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/139 (41%), Positives = 77/139 (55%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
+ S+ Y GH +RLR RF + G+ ALA YE+LEL+LFRLIPR+DTK IAKALL
Sbjct: 59 LKSDGSQSQDEHYHGHRDRLRQRFREGGDRALADYELLELLLFRLIPRRDTKPIAKALLA 118
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF +L V GAP+ LL E+ +G VA +LKLV+ + R+LK +K L +
Sbjct: 119 RFGSLPEVLGAPVQLLTEVKGVGDSVATDLKLVASIAHRMLKGELKGRKVLASWSSVIEY 178
Query: 126 VERHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 179 CRAAMAFETREQFRVLFLD 197
>gi|110637561|ref|YP_677768.1| DNA repair protein [Cytophaga hutchinsonii ATCC 33406]
gi|110280242|gb|ABG58428.1| DNA replication and repair protein RadC [Cytophaga hutchinsonii
ATCC 33406]
Length = 233
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAP 77
+R R++ L KG +AL+ E++ ++L +AK +++ +L +
Sbjct: 14 WAEEDRPREKLLLKGISALSDAELIAILLGSGTTNVSAVELAKQIMQDNNQSLNNLARQN 73
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ LQ+ IG+ A+ L +R A+ I+ + + ++ +
Sbjct: 74 VKALQKFKGIGEAKAITLVSALELGRRRKVADVEIRPQVKSSEDVYNYMQSNLADLPYEE 133
Query: 138 FAYCFSI 144
F
Sbjct: 134 FWILLLN 140
>gi|30264522|ref|NP_846899.1| DNA repair protein RadC [Bacillus anthracis str. Ames]
gi|47529985|ref|YP_021333.1| DNA repair protein RadC [Bacillus anthracis str. 'Ames Ancestor']
gi|49187346|ref|YP_030598.1| DNA repair protein RadC [Bacillus anthracis str. Sterne]
gi|49478639|ref|YP_038504.1| DNA repair protein RadC [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|65321823|ref|ZP_00394782.1| COG2003: DNA repair proteins [Bacillus anthracis str. A2012]
gi|165872011|ref|ZP_02216652.1| DNA repair protein RadC [Bacillus anthracis str. A0488]
gi|167636192|ref|ZP_02394496.1| DNA repair protein RadC [Bacillus anthracis str. A0442]
gi|167640700|ref|ZP_02398960.1| DNA repair protein RadC [Bacillus anthracis str. A0193]
gi|170688713|ref|ZP_02879918.1| DNA repair protein RadC [Bacillus anthracis str. A0465]
gi|170708383|ref|ZP_02898827.1| DNA repair protein RadC [Bacillus anthracis str. A0389]
gi|177653967|ref|ZP_02936008.1| DNA repair protein RadC [Bacillus anthracis str. A0174]
gi|190566980|ref|ZP_03019896.1| DNA repair protein RadC [Bacillus anthracis Tsiankovskii-I]
gi|225866435|ref|YP_002751813.1| DNA repair protein RadC [Bacillus cereus 03BB102]
gi|227817234|ref|YP_002817243.1| DNA repair protein RadC [Bacillus anthracis str. CDC 684]
gi|228917092|ref|ZP_04080650.1| DNA repair protein radC [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228948168|ref|ZP_04110452.1| DNA repair protein radC [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229123994|ref|ZP_04253186.1| DNA repair protein radC [Bacillus cereus 95/8201]
gi|229601494|ref|YP_002868738.1| DNA repair protein RadC [Bacillus anthracis str. A0248]
gi|254687056|ref|ZP_05150914.1| DNA repair protein RadC [Bacillus anthracis str. CNEVA-9066]
gi|254724618|ref|ZP_05186401.1| DNA repair protein RadC [Bacillus anthracis str. A1055]
gi|254736558|ref|ZP_05194264.1| DNA repair protein RadC [Bacillus anthracis str. Western North
America USA6153]
gi|254741596|ref|ZP_05199283.1| DNA repair protein RadC [Bacillus anthracis str. Kruger B]
gi|254754806|ref|ZP_05206841.1| DNA repair protein RadC [Bacillus anthracis str. Vollum]
gi|254757638|ref|ZP_05209665.1| DNA repair protein RadC [Bacillus anthracis str. Australia 94]
gi|301055961|ref|YP_003794172.1| DNA repair protein [Bacillus anthracis CI]
gi|33301484|sp|Q81LD7|Y4685_BACAN RecName: Full=UPF0758 protein BA_4685/GBAA_4685/BAS4351
gi|54036223|sp|Q6HD72|Y4187_BACHK RecName: Full=UPF0758 protein BT9727_4187
gi|254764425|sp|C3P9D9|Y4704_BACAA RecName: Full=UPF0758 protein BAA_4704
gi|254764426|sp|C3L6Y5|Y4721_BACAC RecName: Full=UPF0758 protein BAMEG_4721
gi|254764427|sp|C1ETQ0|Y4566_BACC3 RecName: Full=UPF0758 protein BCA_4566
gi|30259180|gb|AAP28385.1| DNA repair protein RadC [Bacillus anthracis str. Ames]
gi|47505133|gb|AAT33809.1| DNA repair protein RadC [Bacillus anthracis str. 'Ames Ancestor']
gi|49181273|gb|AAT56649.1| DNA repair protein RadC [Bacillus anthracis str. Sterne]
gi|49330195|gb|AAT60841.1| DNA repair protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|164712301|gb|EDR17837.1| DNA repair protein RadC [Bacillus anthracis str. A0488]
gi|167511272|gb|EDR86658.1| DNA repair protein RadC [Bacillus anthracis str. A0193]
gi|167528413|gb|EDR91181.1| DNA repair protein RadC [Bacillus anthracis str. A0442]
gi|170126758|gb|EDS95641.1| DNA repair protein RadC [Bacillus anthracis str. A0389]
gi|170667399|gb|EDT18157.1| DNA repair protein RadC [Bacillus anthracis str. A0465]
gi|172081022|gb|EDT66100.1| DNA repair protein RadC [Bacillus anthracis str. A0174]
gi|190561971|gb|EDV15940.1| DNA repair protein RadC [Bacillus anthracis Tsiankovskii-I]
gi|225786937|gb|ACO27154.1| DNA repair protein RadC [Bacillus cereus 03BB102]
gi|227003430|gb|ACP13173.1| DNA repair protein RadC [Bacillus anthracis str. CDC 684]
gi|228659296|gb|EEL14944.1| DNA repair protein radC [Bacillus cereus 95/8201]
gi|228811526|gb|EEM57863.1| DNA repair protein radC [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228842510|gb|EEM87600.1| DNA repair protein radC [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229265902|gb|ACQ47539.1| DNA repair protein RadC [Bacillus anthracis str. A0248]
gi|300378130|gb|ADK07034.1| DNA repair protein [Bacillus cereus biovar anthracis str. CI]
Length = 225
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGVAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|53729025|ref|ZP_00134298.2| COG2003: DNA repair proteins [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126209424|ref|YP_001054649.1| DNA repair protein RadC [Actinobacillus pleuropneumoniae L20]
gi|165977413|ref|YP_001653006.1| DNA repair protein RadC [Actinobacillus pleuropneumoniae serovar 3
str. JL03]
gi|190151327|ref|YP_001969852.1| DNA repair protein RadC [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|303250352|ref|ZP_07336551.1| DNA repair protein RadC [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|303251745|ref|ZP_07337916.1| DNA repair protein RadC [Actinobacillus pleuropneumoniae serovar 2
str. 4226]
gi|307246909|ref|ZP_07528974.1| hypothetical protein appser1_20990 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307249045|ref|ZP_07531053.1| hypothetical protein appser2_20080 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251244|ref|ZP_07533165.1| hypothetical protein appser4_20050 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307253661|ref|ZP_07535528.1| hypothetical protein appser6_21530 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307255891|ref|ZP_07537692.1| hypothetical protein appser9_21120 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307260344|ref|ZP_07542051.1| hypothetical protein appser11_21250 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307262474|ref|ZP_07544119.1| hypothetical protein appser12_20140 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307264682|ref|ZP_07546262.1| hypothetical protein appser13_20670 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|166218771|sp|A3N3Q8|Y1970_ACTP2 RecName: Full=UPF0758 protein APL_1970
gi|238687531|sp|B0BTZ5|Y2017_ACTPJ RecName: Full=UPF0758 protein APJL_2017
gi|238692412|sp|B3H340|Y2058_ACTP7 RecName: Full=UPF0758 protein APP7_2058
gi|126098216|gb|ABN75044.1| DNA repair protein RadC-like protein [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165877514|gb|ABY70562.1| DNA repair protein [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|189916458|gb|ACE62710.1| DNA repair protein RadC-like protein [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302649175|gb|EFL79360.1| DNA repair protein RadC [Actinobacillus pleuropneumoniae serovar 2
str. 4226]
gi|302650822|gb|EFL80979.1| DNA repair protein RadC [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|306852194|gb|EFM84434.1| hypothetical protein appser1_20990 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306854503|gb|EFM86698.1| hypothetical protein appser2_20080 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306856760|gb|EFM88895.1| hypothetical protein appser4_20050 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858897|gb|EFM90943.1| hypothetical protein appser6_21530 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306861159|gb|EFM93152.1| hypothetical protein appser9_21120 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306865595|gb|EFM97476.1| hypothetical protein appser11_21250 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306867851|gb|EFM99682.1| hypothetical protein appser12_20140 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306869994|gb|EFN01758.1| hypothetical protein appser13_20670 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 220
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L E+L + L I +++ +L F +L + A L +
Sbjct: 8 PREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRM 67
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ ++R L +++ + ++ + + F F
Sbjct: 68 KGLGQTQFIQLQASKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLD 127
Query: 145 N 145
N
Sbjct: 128 N 128
>gi|295095223|emb|CBK84313.1| DNA replication and repair protein RadC [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 221
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L E+L L L P K ++AK L+ F +L G+ A L +
Sbjct: 9 PREKMLRHGVTLLKDDELLALFLRTGTPGKTVFTLAKELIDHFGSLYGLLTAELEAFTHV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +L+ ++ ++R + + ++ F F
Sbjct: 69 EGIGVAKYAQLRGIAELARRFYNVRMEEEDPILTPDMTREFLQSQLSDLEREIFMVIFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|84622119|ref|YP_449491.1| DNA repair protein RadC [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|123523355|sp|Q2P8B0|Y462_XANOM RecName: Full=UPF0758 protein XOO0462
gi|84366059|dbj|BAE67217.1| DNA repair protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 225
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 50/131 (38%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
H+ + R R++ L +G AL+ E+L + + + +D A+ LL R L +
Sbjct: 2 HIHDWPTNERPREKLLARGATALSDAELLAIFVGSGLRGQDAVQTARDLLHRHGPLRPLL 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
P L+ + +G A +L + R L + + L+ + +
Sbjct: 62 DRPAKALERLPGLGPASACKLAAALELAHRHLMSALERGEALSDPPSVGRYFSQRLRARA 121
Query: 135 ANNFAYCFSIN 145
FA F N
Sbjct: 122 YEVFAVLFLDN 132
>gi|293417099|ref|ZP_06659726.1| DNA repair protein RadC [Escherichia coli B185]
gi|291431130|gb|EFF04123.1| DNA repair protein RadC [Escherichia coli B185]
Length = 224
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 131
>gi|157155076|ref|YP_001465118.1| DNA repair protein RadC [Escherichia coli E24377A]
gi|168748714|ref|ZP_02773736.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4113]
gi|168753462|ref|ZP_02778469.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4401]
gi|168759735|ref|ZP_02784742.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4501]
gi|168766058|ref|ZP_02791065.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4486]
gi|168772396|ref|ZP_02797403.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4196]
gi|168779793|ref|ZP_02804800.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4076]
gi|168785514|ref|ZP_02810521.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC869]
gi|168798583|ref|ZP_02823590.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC508]
gi|170682096|ref|YP_001745938.1| DNA repair protein RadC [Escherichia coli SMS-3-5]
gi|191167799|ref|ZP_03029605.1| DNA repair protein RadC [Escherichia coli B7A]
gi|191170534|ref|ZP_03032087.1| DNA repair protein RadC [Escherichia coli F11]
gi|194435617|ref|ZP_03067720.1| DNA repair protein RadC [Escherichia coli 101-1]
gi|195936199|ref|ZP_03081581.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4024]
gi|208807607|ref|ZP_03249944.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4206]
gi|208814077|ref|ZP_03255406.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4045]
gi|208819041|ref|ZP_03259361.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4042]
gi|209399382|ref|YP_002273116.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4115]
gi|215488917|ref|YP_002331348.1| DNA repair protein RadC [Escherichia coli O127:H6 str. E2348/69]
gi|217325841|ref|ZP_03441925.1| DNA repair protein RadC [Escherichia coli O157:H7 str. TW14588]
gi|218551166|ref|YP_002384957.1| DNA repair protein RadC [Escherichia fergusonii ATCC 35469]
gi|218556201|ref|YP_002389114.1| DNA repair protein RadC [Escherichia coli IAI1]
gi|218560710|ref|YP_002393623.1| DNA repair protein RadC [Escherichia coli S88]
gi|218702404|ref|YP_002410033.1| DNA repair protein RadC [Escherichia coli IAI39]
gi|218707272|ref|YP_002414791.1| DNA repair protein RadC [Escherichia coli UMN026]
gi|254795593|ref|YP_003080430.1| DNA repair protein RadC [Escherichia coli O157:H7 str. TW14359]
gi|260857967|ref|YP_003231858.1| protein associated with replication fork [Escherichia coli O26:H11
str. 11368]
gi|261224179|ref|ZP_05938460.1| DNA repair protein RadC [Escherichia coli O157:H7 str. FRIK2000]
gi|261254790|ref|ZP_05947323.1| DNA repair protein RadC [Escherichia coli O157:H7 str. FRIK966]
gi|293407261|ref|ZP_06651185.1| radC [Escherichia coli FVEC1412]
gi|298383007|ref|ZP_06992602.1| DNA repair protein RadC [Escherichia coli FVEC1302]
gi|306816014|ref|ZP_07450152.1| DNA repair protein RadC [Escherichia coli NC101]
gi|307314277|ref|ZP_07593885.1| DNA repair protein RadC [Escherichia coli W]
gi|312968021|ref|ZP_07782232.1| DNA repair protein radC [Escherichia coli 2362-75]
gi|331659958|ref|ZP_08360896.1| DNA repair protein RadC [Escherichia coli TA206]
gi|331665263|ref|ZP_08366164.1| DNA repair protein RadC [Escherichia coli TA143]
gi|54039001|sp|P65958|YICR_ECO57 RecName: Full=UPF0758 protein yicR
gi|54039002|sp|P65959|YICR_SHIFL RecName: Full=UPF0758 protein yicR
gi|54041783|sp|P65957|YICR_ECOL6 RecName: Full=UPF0758 protein yicR
gi|166918665|sp|A7ZTI9|YICR_ECO24 RecName: Full=UPF0758 protein yicR
gi|171704420|sp|A1AHG9|YICR_ECOK1 RecName: Full=UPF0758 protein yicR
gi|172045688|sp|Q0SYG5|YICR_SHIF8 RecName: Full=UPF0758 protein yicR
gi|172045855|sp|Q0TBH1|YICR_ECOL5 RecName: Full=UPF0758 protein yicR
gi|172046244|sp|Q1R4V4|YICR_ECOUT RecName: Full=UPF0758 protein yicR
gi|226736620|sp|B7MFJ9|YICR_ECO45 RecName: Full=UPF0758 protein yicR
gi|226736621|sp|B7NPZ9|YICR_ECO7I RecName: Full=UPF0758 protein yicR
gi|226736622|sp|B7M4C3|YICR_ECO8A RecName: Full=UPF0758 protein yicR
gi|226736623|sp|B7NEU2|YICR_ECOLU RecName: Full=UPF0758 protein yicR
gi|226736624|sp|B1LK75|YICR_ECOSM RecName: Full=UPF0758 protein yicR
gi|226736625|sp|B7LVJ9|YICR_ESCF3 RecName: Full=UPF0758 protein yicR
gi|238054488|sp|B5YWD6|YICR_ECO5E RecName: Full=UPF0758 protein yicR
gi|254789649|sp|B7ULJ3|YICR_ECO27 RecName: Full=UPF0758 protein yicR
gi|30043347|gb|AAP19068.1| DNA repair protein [Shigella flexneri 2a str. 2457T]
gi|56383942|gb|AAN45124.2| DNA repair protein [Shigella flexneri 2a str. 301]
gi|157077106|gb|ABV16814.1| DNA repair protein RadC [Escherichia coli E24377A]
gi|170519814|gb|ACB17992.1| DNA repair protein RadC [Escherichia coli SMS-3-5]
gi|187771513|gb|EDU35357.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4196]
gi|188016882|gb|EDU55004.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4113]
gi|189002388|gb|EDU71374.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4076]
gi|189359101|gb|EDU77520.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4401]
gi|189364789|gb|EDU83208.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4486]
gi|189369603|gb|EDU88019.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4501]
gi|189374591|gb|EDU93007.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC869]
gi|189378726|gb|EDU97142.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC508]
gi|190902142|gb|EDV61885.1| DNA repair protein RadC [Escherichia coli B7A]
gi|190909342|gb|EDV68928.1| DNA repair protein RadC [Escherichia coli F11]
gi|194425160|gb|EDX41144.1| DNA repair protein RadC [Escherichia coli 101-1]
gi|208727408|gb|EDZ77009.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4206]
gi|208735354|gb|EDZ84041.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4045]
gi|208739164|gb|EDZ86846.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4042]
gi|209160782|gb|ACI38215.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC4115]
gi|215266989|emb|CAS11434.1| protein associated with replication fork, possible DNA repair
protein [Escherichia coli O127:H6 str. E2348/69]
gi|217322062|gb|EEC30486.1| DNA repair protein RadC [Escherichia coli O157:H7 str. TW14588]
gi|218358707|emb|CAQ91363.1| protein associated with replication fork, putative DNA repair
protein [Escherichia fergusonii ATCC 35469]
gi|218362969|emb|CAR00606.1| protein associated with replication fork, putative DNA repair
protein [Escherichia coli IAI1]
gi|218367479|emb|CAR05261.1| protein associated with replication fork, putative DNA repair
protein [Escherichia coli S88]
gi|218372390|emb|CAR20264.1| protein associated with replication fork, putative DNA repair
protein [Escherichia coli IAI39]
gi|218434369|emb|CAR15294.1| protein associated with replication fork, putative DNA repair
protein [Escherichia coli UMN026]
gi|254594993|gb|ACT74354.1| protein associated with replication fork, possible DNA repair
protein [Escherichia coli O157:H7 str. TW14359]
gi|257756616|dbj|BAI28118.1| protein associated with replication fork [Escherichia coli O26:H11
str. 11368]
gi|284923671|emb|CBG36768.1| DNA repair protein [Escherichia coli 042]
gi|291426072|gb|EFE99106.1| radC [Escherichia coli FVEC1412]
gi|294489934|gb|ADE88690.1| DNA repair protein RadC [Escherichia coli IHE3034]
gi|298276843|gb|EFI18361.1| DNA repair protein RadC [Escherichia coli FVEC1302]
gi|305850410|gb|EFM50867.1| DNA repair protein RadC [Escherichia coli NC101]
gi|306906100|gb|EFN36619.1| DNA repair protein RadC [Escherichia coli W]
gi|307628711|gb|ADN73015.1| DNA repair protein RadC [Escherichia coli UM146]
gi|309704040|emb|CBJ03386.1| DNA repair protein [Escherichia coli ETEC H10407]
gi|312287280|gb|EFR15189.1| DNA repair protein radC [Escherichia coli 2362-75]
gi|313647488|gb|EFS11938.1| DNA repair protein radC [Shigella flexneri 2a str. 2457T]
gi|315062926|gb|ADT77253.1| protein associated with replication fork, possible DNA repair
protein [Escherichia coli W]
gi|320191311|gb|EFW65961.1| DNA repair protein RadC [Escherichia coli O157:H7 str. EC1212]
gi|320193855|gb|EFW68488.1| DNA repair protein RadC [Escherichia coli WV_060327]
gi|320201337|gb|EFW75918.1| DNA repair protein RadC [Escherichia coli EC4100B]
gi|320639545|gb|EFX09153.1| hypothetical protein ECO5101_20865 [Escherichia coli O157:H7 str.
G5101]
gi|320644984|gb|EFX14014.1| hypothetical protein ECO9389_10227 [Escherichia coli O157:H- str.
493-89]
gi|320650251|gb|EFX18740.1| hypothetical protein ECO2687_12698 [Escherichia coli O157:H- str. H
2687]
gi|320655603|gb|EFX23531.1| hypothetical protein ECO7815_06054 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661337|gb|EFX28761.1| hypothetical protein ECO5905_11396 [Escherichia coli O55:H7 str.
USDA 5905]
gi|323155289|gb|EFZ41472.1| DNA repair protein radC [Escherichia coli EPECa14]
gi|323376481|gb|ADX48749.1| DNA repair protein RadC [Escherichia coli KO11]
gi|323939603|gb|EGB35809.1| DNA repair protein RadC [Escherichia coli E482]
gi|323949877|gb|EGB45761.1| DNA repair protein RadC [Escherichia coli H252]
gi|323954822|gb|EGB50602.1| DNA repair protein RadC [Escherichia coli H263]
gi|323959886|gb|EGB55534.1| DNA repair protein RadC [Escherichia coli H489]
gi|323965904|gb|EGB61352.1| DNA repair protein RadC [Escherichia coli M863]
gi|323971280|gb|EGB66525.1| DNA repair protein RadC [Escherichia coli TA007]
gi|323975142|gb|EGB70247.1| DNA repair protein RadC [Escherichia coli TW10509]
gi|324111532|gb|EGC05513.1| DNA repair protein RadC [Escherichia fergusonii B253]
gi|326337363|gb|EGD61198.1| DNA repair protein RadC [Escherichia coli O157:H7 str. 1044]
gi|326339888|gb|EGD63695.1| DNA repair protein RadC [Escherichia coli O157:H7 str. 1125]
gi|327250764|gb|EGE62466.1| DNA repair protein radC [Escherichia coli STEC_7v]
gi|331053173|gb|EGI25206.1| DNA repair protein RadC [Escherichia coli TA206]
gi|331057773|gb|EGI29759.1| DNA repair protein RadC [Escherichia coli TA143]
Length = 222
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|325917528|ref|ZP_08179731.1| DNA replication and repair protein RadC [Xanthomonas vesicatoria
ATCC 35937]
gi|325536244|gb|EGD08037.1| DNA replication and repair protein RadC [Xanthomonas vesicatoria
ATCC 35937]
Length = 243
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 51/135 (37%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
S+ H+ + R R++ L +G AL+ E+L + + + +D A+ LL R L
Sbjct: 16 SRHMHIHDWPTNERPREKLLARGAAALSDAELLAIFVGSGLRGQDAVQTARDLLHRHGPL 75
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+ P L + +G A +L + R L + + L+ +
Sbjct: 76 RLLLDRPAKALAHLPGLGPASACKLSAAMELAHRHLMSELERGEALSDPPSVGRYFSQRL 135
Query: 131 PMKNANNFAYCFSIN 145
+ FA F N
Sbjct: 136 RARAYEVFAVLFLDN 150
>gi|58580118|ref|YP_199134.1| DNA repair protein RadC [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58424712|gb|AAW73749.1| DNA repair protein [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 243
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 52/135 (38%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
S+ H+ + R R++ L +G AL+ E+L + + + +D A+ LL R L
Sbjct: 16 SRHMHIHDWPTNERPREKLLARGATALSDAELLAIFVGSGLRGQDAVQTARDLLHRHGPL 75
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+ P L+ + +G A +L + R L + + L+ +
Sbjct: 76 RPLLDRPAKALERLPGLGPASACKLAAALELAHRHLMSALERGEALSDPPSVGRYFSQRL 135
Query: 131 PMKNANNFAYCFSIN 145
+ FA F N
Sbjct: 136 RARAYEVFAVLFLDN 150
>gi|206579335|ref|YP_002236000.1| DNA repair protein RadC [Klebsiella pneumoniae 342]
gi|238054489|sp|B5XTG5|Y116_KLEP3 RecName: Full=UPF0758 protein KPK_0116
gi|206568393|gb|ACI10169.1| DNA repair protein RadC [Klebsiella pneumoniae 342]
Length = 221
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 51/121 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ G AL E+L L L R+D S A+ALL+RF +L + A L +
Sbjct: 9 PREKMLQYGIEALTDVELLALFLRVGTRRQDVLSYAQALLQRFGSLYALLSADKAQLIAV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +G +LK ++ ++R + + L ++ + F F
Sbjct: 69 DGLGLAKYAQLKGIAELARRYFSSQLVEEAALVSPSTTREFLQSQLTEEEREIFMVIFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|121608622|ref|YP_996429.1| DNA repair protein RadC [Verminephrobacter eiseniae EF01-2]
gi|171769486|sp|A1WIF4|Y1654_VEREI RecName: Full=UPF0758 protein Veis_1654
gi|121553262|gb|ABM57411.1| DNA repair protein RadC [Verminephrobacter eiseniae EF01-2]
Length = 237
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 13/134 (9%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-------------RFATLG 71
R++ L +G LA E+L ++L I K +A+ LL F +
Sbjct: 12 PREKLLARGPATLADAELLAILLRTGIMGKGVLQMAQELLDPPGVDAATGQPTGGFGGIA 71
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
G+ A L+ I +G EL V ++R L ++
Sbjct: 72 GLLHASAADLERIKGLGPAKRAELVAVLELARRALAQQLRECAVFDTPDAVKHYLQLQLA 131
Query: 132 MKNANNFAYCFSIN 145
K FA F N
Sbjct: 132 AKGHEVFAVLFLDN 145
>gi|16079856|ref|NP_390682.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str.
168]
gi|221310744|ref|ZP_03592591.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str.
168]
gi|221315069|ref|ZP_03596874.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221319988|ref|ZP_03601282.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221324270|ref|ZP_03605564.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str.
SMY]
gi|321312335|ref|YP_004204622.1| hypothetical protein BSn5_04835 [Bacillus subtilis BSn5]
gi|400964|sp|Q02170|YSXA_BACSU RecName: Full=UPF0758 protein ysxA
gi|142854|gb|AAA22396.1| homologous to E. coli radC gene product and to unidentified protein
from Staphylococcus aureus [Bacillus subtilis]
gi|143162|gb|AAA22583.1| orfB [Bacillus subtilis]
gi|2635269|emb|CAB14764.1| putative DNA repair protein [Bacillus subtilis subsp. subtilis str.
168]
gi|320018609|gb|ADV93595.1| hypothetical protein BSn5_04835 [Bacillus subtilis BSn5]
Length = 231
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 44/123 (35%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L+ G LA +E+L ++L + ++ LL+ F L + A + L
Sbjct: 16 KEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEEL 75
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG A+++ RI K + + V +F
Sbjct: 76 SSIPGIGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCL 135
Query: 142 FSI 144
+
Sbjct: 136 YLN 138
>gi|324019747|gb|EGB88966.1| DNA repair protein RadC [Escherichia coli MS 117-3]
Length = 215
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 3 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 62
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 63 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 122
>gi|229175136|ref|ZP_04302652.1| DNA repair protein radC [Bacillus cereus MM3]
gi|228608272|gb|EEK65578.1| DNA repair protein radC [Bacillus cereus MM3]
Length = 223
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 26 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHHFDGLRMLKDATLEELV 85
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 86 SIHGVGIAKAAQLIAAFELGRRMVRLEYQNRYSIRSPEDCARYMMEEMRFLQQEHFVCLY 145
Query: 143 SI 144
Sbjct: 146 LN 147
>gi|219847704|ref|YP_002462137.1| DNA repair protein RadC [Chloroflexus aggregans DSM 9485]
gi|254764430|sp|B8G568|Y777_CHLAD RecName: Full=UPF0758 protein Cagg_0777
gi|219541963|gb|ACL23701.1| DNA repair protein RadC [Chloroflexus aggregans DSM 9485]
Length = 229
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 47/128 (36%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ +++ R+R + G AL+ E+L ++L I + +A+ LL + G+ A
Sbjct: 7 HELPVNDQPRERLARLGAGALSDAELLAILLRVGISGTNVLQLAQQLLGEYGGWIGLQVA 66
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L IG A +K +R+ +++ + + + +
Sbjct: 67 DYNDLCRRTGIGASKAATIKAALEIGRRLARSSVEERYPIRSPGDVAALLMVEMSHLDQE 126
Query: 137 NFAYCFSI 144
+
Sbjct: 127 HLRTVLLD 134
>gi|290488|gb|AAA61991.1| differs from radC sequence in X63366; similar to S. aureus putative
25 kD protein [Escherichia coli]
Length = 224
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 131
>gi|325136246|gb|EGC58854.1| DNA repair protein RadC [Neisseria meningitidis M0579]
Length = 225
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 45/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L ++L +A+ LL+ F +LG + A
Sbjct: 4 KQWPEGERPREKLLERGAAALSDAELLAILLRVGTLGMSAVDLARYLLQEFGSLGRLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +G + +V +RIL L+ + H +
Sbjct: 64 EVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|189485402|ref|YP_001956343.1| DNA repair protein RadC [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287361|dbj|BAG13882.1| DNA repair protein RadC [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 229
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 59/133 (44%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K Y+GH RLR +F+ G + LA YEILEL L ++PRKD K++AK ++ +F +L
Sbjct: 4 KKPEPHYLGHRCRLRKKFIPGGFSNLADYEILELTLTYVLPRKDVKALAKEMINKFGSLK 63
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
VF A L+ I I A L + L + K L+ + +
Sbjct: 64 QVFDADTDQLKGIKGISDYSAEFLLFLKKFISLYLSLDIKEKDRLSSPKNVKDYLISTLS 123
Query: 132 MKNANNFAYCFSI 144
+N F
Sbjct: 124 GENIEKFYAILLN 136
>gi|238760452|ref|ZP_04621590.1| DNA repair protein radC [Yersinia aldovae ATCC 35236]
gi|238701347|gb|EEP93926.1| DNA repair protein radC [Yersinia aldovae ATCC 35236]
Length = 222
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L E+L + L IP +A+ L++ F +L G+ A L
Sbjct: 10 PREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMRMAEYLIEEFGSLHGLISADYQTLSAQ 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +++ ++ + R ++ + L + ++ + F F
Sbjct: 70 KGIGTSKYSQIQAIAELACRCFSSHLMRESVLQNPEITQKFLQNILSHREREIFLVMFLD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|315297033|gb|EFU56313.1| DNA repair protein RadC [Escherichia coli MS 16-3]
Length = 224
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSCV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 131
>gi|323173231|gb|EFZ58860.1| DNA repair protein radC [Escherichia coli LT-68]
Length = 214
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 2 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 62 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 121
>gi|229013669|ref|ZP_04170798.1| DNA repair protein radC [Bacillus mycoides DSM 2048]
gi|228747591|gb|EEL97465.1| DNA repair protein radC [Bacillus mycoides DSM 2048]
Length = 241
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + +++ +L F L + A L +
Sbjct: 27 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLTLSDNILHHFDGLRMLKDATLEEMM 86
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 87 SIHGVGIAKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCASYMMEEMRFLQQEHFVCLY 146
Query: 143 SI 144
Sbjct: 147 LN 148
>gi|226326898|ref|ZP_03802416.1| hypothetical protein PROPEN_00758 [Proteus penneri ATCC 35198]
gi|225204735|gb|EEG87089.1| hypothetical protein PROPEN_00758 [Proteus penneri ATCC 35198]
Length = 198
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 46/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L E+L L L K +A LLK +L V A L
Sbjct: 11 PREKLLLYGVESLTDIELLALFLRTGTYEKSVLELAAFLLKECGSLYHVINADYETLGRF 70
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ ++ +QR + K L+ + +++ ++ F F
Sbjct: 71 KGVGVGKFTQLQAINEMAQRFSTTQFMYKNVLSSSEDTKYYLQKLLHWRDREVFVVLFLD 130
Query: 145 N 145
N
Sbjct: 131 N 131
>gi|56964380|ref|YP_176111.1| DNA repair protein RadC [Bacillus clausii KSM-K16]
gi|73913732|sp|Q5WER0|Y2615_BACSK RecName: Full=UPF0758 protein ABC2615
gi|56910623|dbj|BAD65150.1| DNA repair protein RadC [Bacillus clausii KSM-K16]
Length = 230
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 53/122 (43%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+RF+++G AL+ EI+ ++L + +A LL +F TL APL +Q
Sbjct: 12 ERPRERFIREGAKALSNQEIVAILLRTGTKQSSALHVASTLLSQFPTLAMFSEAPLEEIQ 71
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG A+EL +RI + ++ ++ + V +F +
Sbjct: 72 KVPGIGMAKAIELSAAIELGRRIQRETKLVRPVISSPEDAAELVSEDMRGLQQEHFVALY 131
Query: 143 SI 144
Sbjct: 132 LN 133
>gi|22124012|ref|NP_667435.1| DNA repair protein RadC [Yersinia pestis KIM 10]
gi|45439915|ref|NP_991454.1| DNA repair protein RadC [Yersinia pestis biovar Microtus str.
91001]
gi|51594404|ref|YP_068595.1| DNA repair protein RadC [Yersinia pseudotuberculosis IP 32953]
gi|108809484|ref|YP_653400.1| DNA repair protein RadC [Yersinia pestis Antiqua]
gi|108813961|ref|YP_649728.1| DNA repair protein RadC [Yersinia pestis Nepal516]
gi|145601096|ref|YP_001165172.1| DNA repair protein RadC [Yersinia pestis Pestoides F]
gi|150260887|ref|ZP_01917615.1| putative DNA repair protein [Yersinia pestis CA88-4125]
gi|153948496|ref|YP_001399062.1| DNA repair protein RadC [Yersinia pseudotuberculosis IP 31758]
gi|162421088|ref|YP_001604695.1| DNA repair protein RadC [Yersinia pestis Angola]
gi|165926061|ref|ZP_02221893.1| DNA repair protein RadC [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165936188|ref|ZP_02224757.1| DNA repair protein RadC [Yersinia pestis biovar Orientalis str.
IP275]
gi|166011487|ref|ZP_02232385.1| DNA repair protein RadC [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166213687|ref|ZP_02239722.1| DNA repair protein RadC [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167402113|ref|ZP_02307590.1| DNA repair protein RadC [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167418902|ref|ZP_02310655.1| DNA repair protein RadC [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167426676|ref|ZP_02318429.1| DNA repair protein RadC [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170026362|ref|YP_001722867.1| DNA repair protein RadC [Yersinia pseudotuberculosis YPIII]
gi|186893392|ref|YP_001870504.1| DNA repair protein RadC [Yersinia pseudotuberculosis PB1/+]
gi|218927270|ref|YP_002345145.1| DNA repair protein RadC [Yersinia pestis CO92]
gi|229836162|ref|ZP_04456330.1| protein associated with replication fork, possible DNA repair
protein [Yersinia pestis Pestoides A]
gi|229839898|ref|ZP_04460057.1| protein associated with replication fork, possible DNA repair
protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229841980|ref|ZP_04462135.1| protein associated with replication fork, possible DNA repair
protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229904491|ref|ZP_04519602.1| protein associated with replication fork, possible DNA repair
protein [Yersinia pestis Nepal516]
gi|270488490|ref|ZP_06205564.1| DNA repair protein RadC [Yersinia pestis KIM D27]
gi|294502156|ref|YP_003566218.1| DNA repair protein RadC [Yersinia pestis Z176003]
gi|25009034|sp|Q8ZJP3|Y049_YERPE RecName: Full=UPF0758 protein YPO0049/y0092/YP_0050
gi|73913745|sp|Q66GD6|Y046_YERPS RecName: Full=UPF0758 protein YPTB0046
gi|123245478|sp|Q1C267|Y3493_YERPA RecName: Full=UPF0758 protein YPA_3493
gi|123372833|sp|Q1CD02|Y3801_YERPN RecName: Full=UPF0758 protein YPN_3801
gi|166218801|sp|A4TSD7|Y3856_YERPP RecName: Full=UPF0758 protein YPDSF_3856
gi|166918668|sp|A7FCT4|Y061_YERP3 RecName: Full=UPF0758 protein YpsIP31758_0061
gi|238687317|sp|A9R674|Y055_YERPG RecName: Full=UPF0758 protein YpAngola_A0055
gi|238688492|sp|B1JQX3|Y4155_YERPY RecName: Full=UPF0758 protein YPK_4155
gi|238691334|sp|B2JYN3|Y048_YERPB RecName: Full=UPF0758 protein YPTS_0048
gi|21956754|gb|AAM83686.1|AE013609_11 DNA repair protein [Yersinia pestis KIM 10]
gi|45434770|gb|AAS60331.1| putative DNA repair protein [Yersinia pestis biovar Microtus str.
91001]
gi|51587686|emb|CAH19286.1| putative DNA repair protein [Yersinia pseudotuberculosis IP 32953]
gi|108777609|gb|ABG20128.1| DNA repair protein [Yersinia pestis Nepal516]
gi|108781397|gb|ABG15455.1| putative DNA repair protein [Yersinia pestis Antiqua]
gi|115345881|emb|CAL18739.1| putative DNA repair protein [Yersinia pestis CO92]
gi|145212792|gb|ABP42199.1| DNA repair protein [Yersinia pestis Pestoides F]
gi|149290295|gb|EDM40372.1| putative DNA repair protein [Yersinia pestis CA88-4125]
gi|152959991|gb|ABS47452.1| DNA repair protein RadC [Yersinia pseudotuberculosis IP 31758]
gi|162353903|gb|ABX87851.1| DNA repair protein RadC [Yersinia pestis Angola]
gi|165915802|gb|EDR34410.1| DNA repair protein RadC [Yersinia pestis biovar Orientalis str.
IP275]
gi|165921921|gb|EDR39098.1| DNA repair protein RadC [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165989633|gb|EDR41934.1| DNA repair protein RadC [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166205089|gb|EDR49569.1| DNA repair protein RadC [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962896|gb|EDR58917.1| DNA repair protein RadC [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167048488|gb|EDR59896.1| DNA repair protein RadC [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167054365|gb|EDR64182.1| DNA repair protein RadC [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169752896|gb|ACA70414.1| DNA repair protein RadC [Yersinia pseudotuberculosis YPIII]
gi|186696418|gb|ACC87047.1| DNA repair protein RadC [Yersinia pseudotuberculosis PB1/+]
gi|229678609|gb|EEO74714.1| protein associated with replication fork, possible DNA repair
protein [Yersinia pestis Nepal516]
gi|229690290|gb|EEO82344.1| protein associated with replication fork, possible DNA repair
protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229696264|gb|EEO86311.1| protein associated with replication fork, possible DNA repair
protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229706610|gb|EEO92616.1| protein associated with replication fork, possible DNA repair
protein [Yersinia pestis Pestoides A]
gi|262360235|gb|ACY56956.1| DNA repair protein RadC [Yersinia pestis D106004]
gi|262364182|gb|ACY60739.1| DNA repair protein RadC [Yersinia pestis D182038]
gi|270336994|gb|EFA47771.1| DNA repair protein RadC [Yersinia pestis KIM D27]
gi|294352615|gb|ADE62956.1| DNA repair protein RadC [Yersinia pestis Z176003]
gi|320013403|gb|ADV96974.1| protein associated with replication fork, possible DNA repair
protein [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 222
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L E+L + L IP +A+ L++ F +L G+ A L
Sbjct: 10 PREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMKMAEYLIETFGSLHGLISADYQTLCAH 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +++ + + R ++ + L ++ + F F
Sbjct: 70 KGIGASKYSQIQAIGELACRCFSSHLMRESVLLNPGITQKFLQNILSHREREIFLVVFLD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|329891298|ref|ZP_08269641.1| DNA repair protein RadC family protein [Brevundimonas diminuta ATCC
11568]
gi|328846599|gb|EGF96163.1| DNA repair protein RadC family protein [Brevundimonas diminuta ATCC
11568]
Length = 243
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
+ + GH RLR+R G + L YE+LEL LFR P+ D K IAKALL RF +L
Sbjct: 9 PKAKPHHAGHRERLRERARTAGIHHLPDYELLELFLFRSQPQGDVKPIAKALLTRFGSLA 68
Query: 72 GVFGAPLHLLQEI---------NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
V A + L + +G AL+L + S+R+ K + + ++
Sbjct: 69 AVLAASVEDLMTVRAEDSRGRSKGVGAETALDLAALHEVSRRVAKEEANKRTVISSWTAL 128
Query: 123 LISVERHYPMKNANNFAYCFSI 144
L V + F +
Sbjct: 129 LAYVRLSLQHEPREQFRVLYLD 150
>gi|52081286|ref|YP_080077.1| DNA repair protein RadC [Bacillus licheniformis ATCC 14580]
gi|52786665|ref|YP_092494.1| DNA repair protein RadC [Bacillus licheniformis ATCC 14580]
gi|81690952|sp|Q65GL3|Y2933_BACLD RecName: Full=UPF0758 protein BLi02933/BL00636
gi|52004497|gb|AAU24439.1| DNA repair protein [Bacillus licheniformis ATCC 14580]
gi|52349167|gb|AAU41801.1| RadC [Bacillus licheniformis ATCC 14580]
Length = 224
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L G +L+ +E+L ++L ++ ++ LL+ F L + A L
Sbjct: 10 ERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELS 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ IG+ A+++ +RI + + + + + +F +
Sbjct: 70 SISGIGRAKAVQILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVY 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|331685301|ref|ZP_08385887.1| DNA repair protein RadC [Escherichia coli H299]
gi|331077672|gb|EGI48884.1| DNA repair protein RadC [Escherichia coli H299]
Length = 222
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLRFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|238750801|ref|ZP_04612299.1| DNA repair protein radC [Yersinia rohdei ATCC 43380]
gi|238710945|gb|EEQ03165.1| DNA repair protein radC [Yersinia rohdei ATCC 43380]
Length = 235
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L E+L + L IP +A+ L+K F +L G+ A L
Sbjct: 23 PREKLLKYGAAVLTDSELLAIFLRTGIPGMHVMKMAEYLIKEFGSLQGLVSADYSALCTK 82
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +++ ++ + R + + + ++ + F F
Sbjct: 83 KGIGVSKYSQIQAIAELASRCFSSRLMRESVMLNPDITQKFLQNILSQREREVFLVMFLD 142
Query: 145 N 145
N
Sbjct: 143 N 143
>gi|71279754|ref|YP_266951.1| DNA repair protein RadC, n-terminal fragment [Colwellia
psychrerythraea 34H]
gi|71145494|gb|AAZ25967.1| DNA repair protein RadC, n-terminal fragment [Colwellia
psychrerythraea 34H]
Length = 164
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 3 DFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
+ ++++P + L R R++ + G ++L+ E+L + L + + +A+
Sbjct: 9 ESALNESPLNQNALKNWPEMERPREKLVSLGSSSLSDAELLAIFLRTGVRGCNVVDLARQ 68
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQP 121
LLK F +LG +F A + +G ++L+ S+R L N LT Q
Sbjct: 69 LLKSFGSLGAIFAASQEDFCARHGLGMAKYVQLQACLEMSKRYLAENIKDIDCSLTSSQA 128
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ ++ FA F
Sbjct: 129 TRDYLLSELRLETREIFAVLFLD 151
>gi|209517442|ref|ZP_03266283.1| DNA repair protein RadC [Burkholderia sp. H160]
gi|209502096|gb|EEA02111.1| DNA repair protein RadC [Burkholderia sp. H160]
Length = 283
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 51/126 (40%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+ R+R + +G + L+ E++ L+L +P D S+A+ALL+RF +L + A
Sbjct: 58 WLRRDMPRERLINQGPDVLSDTEMIALVLGSGLPGHDVFSVARALLERFGSLRAMLDATY 117
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
I IG +L + ++R L ++ + + + + F
Sbjct: 118 ADFDGIRGIGPAKKAQLLAIMEMARRSLVDKMRKRELMNSPEAVESYLRLLIGGQPQEVF 177
Query: 139 AYCFSI 144
F
Sbjct: 178 VSLFLD 183
>gi|304320238|ref|YP_003853881.1| DNA repair protein RadC [Parvularcula bermudensis HTCC2503]
gi|303299140|gb|ADM08739.1| DNA repair protein RadC [Parvularcula bermudensis HTCC2503]
Length = 245
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 11/150 (7%)
Query: 9 APSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA 68
+P+ + GH RL+ RF Q G + + YE+LELILF IPRKD K +AKALL RF
Sbjct: 8 SPTSVAAPGPTGHRQRLKSRFRQAGVDGIHDYELLELILFAAIPRKDVKPLAKALLSRFG 67
Query: 69 TLGGVFGAPLHLLQEIN---------RIGKRVALELKLVSVASQRILKANWSIKKFLTPG 119
T+ V AP L E+ + + L+ A+ R+ + N + L+
Sbjct: 68 TVADVLSAPRTRLLEVKVDLGSGKTLAMTDASVDQFHLIKAAALRLSQQNLLERPVLSSW 127
Query: 120 QPCLISVERHYPMKNANNFAYCFSI--NII 147
L V + F + N++
Sbjct: 128 DKLLAYVRAQIAYETVEQFRVLYLNAKNVL 157
>gi|295677432|ref|YP_003605956.1| DNA repair protein RadC [Burkholderia sp. CCGE1002]
gi|295437275|gb|ADG16445.1| DNA repair protein RadC [Burkholderia sp. CCGE1002]
Length = 303
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 49/126 (38%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+ R+R + +G L+ E++ L+L +P D S+A+ALL RF +L + A
Sbjct: 58 WLRRDMPRERLIDQGPEVLSDTEMIALVLGSGLPGHDVFSVARALLDRFGSLRAMLDATY 117
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
I IG +L + ++R L ++ + + + + F
Sbjct: 118 ADFDGIRGIGPAKKAQLLAIMEMARRSLVDKMRKRELMNSPEAVESYLRLLIGGQPQEVF 177
Query: 139 AYCFSI 144
F
Sbjct: 178 VSLFLD 183
>gi|212712581|ref|ZP_03320709.1| hypothetical protein PROVALCAL_03676 [Providencia alcalifaciens DSM
30120]
gi|212684797|gb|EEB44325.1| hypothetical protein PROVALCAL_03676 [Providencia alcalifaciens DSM
30120]
Length = 221
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 42/121 (34%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L+ E+L + L + +A+ LL F +L + A L E
Sbjct: 9 PREKMLAYGAASLSDIELLAIFLRTGTRGESVLQLAERLLYEFGSLYLLVQADYKKLIEC 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ S ++R + + + + F F
Sbjct: 69 KGVGNCKLTQLQAASELAKRCFSMQVLCTDIMNNPNALKSKLLELFSGQEREVFIVLFLN 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|312882919|ref|ZP_07742651.1| DNA repair protein RadC [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369438|gb|EFP96958.1| DNA repair protein RadC [Vibrio caribbenthicus ATCC BAA-2122]
Length = 224
Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 47/120 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G ++L+ E+L + L I + +A +L+ F +L +F A
Sbjct: 12 PREKLLKMGASSLSDAELLAIFLRTGIHKMPVLELANCVLEEFGSLRALFMADPTSFCRH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ ++R L K LT + + + K FA F
Sbjct: 72 RGLGLTKYAQLQASLEVTRRYLLEQLKAKDILTSPEQTKLFLTDLLRDKPREEFAVIFLD 131
>gi|89110373|ref|AP_004153.1| protein associated with replication fork, possible DNA repair
protein [Escherichia coli str. K-12 substr. W3110]
gi|162135914|ref|NP_418095.4| conserved protein, UPF0758 family; not radC [Escherichia coli str.
K-12 substr. MG1655]
gi|170083146|ref|YP_001732466.1| protein associated with replication fork, DNA repair protein
[Escherichia coli str. K-12 substr. DH10B]
gi|238902729|ref|YP_002928525.1| protein associated with replication fork, possible DNA repair
protein [Escherichia coli BW2952]
gi|6686314|sp|P25531|YICR_ECOLI RecName: Full=UPF0758 protein yicR
gi|229485552|sp|B1X972|YICR_ECODH RecName: Full=UPF0758 protein yicR
gi|259551860|sp|C4ZXN0|YICR_ECOBW RecName: Full=UPF0758 protein yicR
gi|85676404|dbj|BAE77654.1| protein associated with replication fork, possible DNA repair
protein [Escherichia coli str. K12 substr. W3110]
gi|87082300|gb|AAC76662.2| conserved protein, UPF0758 family; not radC [Escherichia coli str.
K-12 substr. MG1655]
gi|169890981|gb|ACB04688.1| protein associated with replication fork, possible DNA repair
protein [Escherichia coli str. K-12 substr. DH10B]
gi|238863294|gb|ACR65292.1| protein associated with replication fork, possible DNA repair
protein [Escherichia coli BW2952]
gi|260447343|gb|ACX37765.1| DNA repair protein RadC [Escherichia coli DH1]
gi|315138220|dbj|BAJ45379.1| DNA repair protein RadC [Escherichia coli DH1]
Length = 222
Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|294649267|ref|ZP_06726702.1| DNA repair protein RadC [Acinetobacter haemolyticus ATCC 19194]
gi|292824820|gb|EFF83588.1| DNA repair protein RadC [Acinetobacter haemolyticus ATCC 19194]
Length = 244
Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R+R L +G +L+ E+L + L + +A+ L++ F L +F A L
Sbjct: 12 WPEQERPRERLLLQGAQSLSDAELLAIFLRSGSKQHSAVELARILIQHFGGLNPIFDASL 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYPMKNANN 137
L + N I +L V +R L ++ ++ L L + +
Sbjct: 72 EDLSQFNGIASTKYAQLMAVKELGRRYLNNHFQQQRLCLDTSSLVLDYLRYELMGEKQEV 131
Query: 138 FAYCFSI 144
FA
Sbjct: 132 FAVLCLD 138
>gi|194431265|ref|ZP_03063558.1| DNA repair protein RadC [Shigella dysenteriae 1012]
gi|194420720|gb|EDX36796.1| DNA repair protein RadC [Shigella dysenteriae 1012]
gi|332084498|gb|EGI89693.1| DNA repair protein radC [Shigella dysenteriae 155-74]
Length = 222
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGLSALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|237811181|ref|YP_002895632.1| DNA repair protein RadC [Burkholderia pseudomallei MSHR346]
gi|254181484|ref|ZP_04888081.1| DNA repair protein RadC [Burkholderia pseudomallei 1655]
gi|184212022|gb|EDU09065.1| DNA repair protein RadC [Burkholderia pseudomallei 1655]
gi|237504391|gb|ACQ96709.1| DNA repair protein RadC [Burkholderia pseudomallei MSHR346]
Length = 280
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A
Sbjct: 65 RDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDF 124
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + IG L V ++R L + + + + F
Sbjct: 125 KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCL 184
Query: 142 FSI 144
F
Sbjct: 185 FLD 187
>gi|196034552|ref|ZP_03101961.1| DNA repair protein RadC [Bacillus cereus W]
gi|228929500|ref|ZP_04092520.1| DNA repair protein radC [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|195993094|gb|EDX57053.1| DNA repair protein RadC [Bacillus cereus W]
gi|228830180|gb|EEM75797.1| DNA repair protein radC [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 225
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKATQLIAAFELGRRMVRLEYQNRYSIRNPEDCARYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|326387170|ref|ZP_08208780.1| DNA repair protein RadC [Novosphingobium nitrogenifigens DSM 19370]
gi|326208351|gb|EGD59158.1| DNA repair protein RadC [Novosphingobium nitrogenifigens DSM 19370]
Length = 301
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 70/141 (49%)
Query: 4 FRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
+ +++ D GH RLR R L+ G++ALA +EI+E +L IP+KD K +A+ L
Sbjct: 68 KKTDANRVRETGNDPSGHRGRLRQRLLEGGDDALADHEIVEYLLMTAIPQKDVKPLARVL 127
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
++RF +L GVF A L I+ I + A LK+V VA++R+ A + L+ Q +
Sbjct: 128 MQRFGSLAGVFNADPRALTGISGIKETAAASLKIVGVAARRLALATVREEPILSSWQALI 187
Query: 124 ISVERHYPMKNANNFAYCFSI 144
+ +
Sbjct: 188 DYLHIDMAHLTHERVRVLYLN 208
>gi|253681762|ref|ZP_04862559.1| DNA repair protein RadC [Clostridium botulinum D str. 1873]
gi|253561474|gb|EES90926.1| DNA repair protein RadC [Clostridium botulinum D str. 1873]
Length = 228
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E++ +IL ++ +++ +LK+ L G+ +
Sbjct: 14 ERPRERLLKYGTQSLSNSELIAIILRTGSSNENILNLSSRILKQCGGLNGLLTLVPEEIM 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ IG+ A ++ + ++R + + V +
Sbjct: 74 TLKGIGRAKATQIMAIGELAKRFKAYKSGDVYIIKSPRDVADLVMDEMRYFKEEHLRVIM 133
Query: 143 SI--NII 147
NI+
Sbjct: 134 LNTKNIV 140
>gi|118479620|ref|YP_896771.1| DNA repair protein RadC [Bacillus thuringiensis str. Al Hakam]
gi|118418845|gb|ABK87264.1| DNA replication and repair protein RadC [Bacillus thuringiensis
str. Al Hakam]
Length = 208
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|298207705|ref|YP_003715884.1| putative DNA repair protein [Croceibacter atlanticus HTCC2559]
gi|83850342|gb|EAP88210.1| putative DNA repair protein [Croceibacter atlanticus HTCC2559]
Length = 231
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 1/125 (0%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGVFGAPLHL 80
+R R++ L KG+ AL+ E++ +++ ++ ++K +L L + +
Sbjct: 15 DDRPREKLLLKGKTALSDAELIAILIGSGNRQESAVELSKRILADFHNNLNELGKQSVET 74
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L IG+ A+ + +R +K +T ++ + F
Sbjct: 75 LTSYKGIGEAKAISIVAAMELGRRRRFEAALERKVITSSASVFELMQPIIGDLDHEEFWV 134
Query: 141 CFSIN 145
+ N
Sbjct: 135 VYLNN 139
>gi|298242247|ref|ZP_06966054.1| DNA repair protein RadC [Ktedonobacter racemifer DSM 44963]
gi|297555301|gb|EFH89165.1| DNA repair protein RadC [Ktedonobacter racemifer DSM 44963]
Length = 244
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 4/146 (2%)
Query: 3 DFRMSKAPSKDSHLD----YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKS 58
+ + +P S + H R R+R + G AL+ E+L +IL +
Sbjct: 5 EKGLPASPDTKSAYHVTVRELPSHERPRERLRRYGPQALSTIELLAIILRTGSTKGSVLD 64
Query: 59 IAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTP 118
+A LL ++ L G+ A L +G+ A ++K +R+ + +
Sbjct: 65 LANRLLAKYGGLSGLMRADFSELCHEYGLGEAKASQVKAALEIGRRLSMLQPDERYRIRS 124
Query: 119 GQPCLISVERHYPMKNANNFAYCFSI 144
V +
Sbjct: 125 STDAANLVMLEMAYLDYEQLRILLLD 150
>gi|89891670|ref|ZP_01203173.1| DNA repair protein, RadC [Flavobacteria bacterium BBFL7]
gi|89516005|gb|EAS18669.1| DNA repair protein, RadC [Flavobacteria bacterium BBFL7]
Length = 232
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 47/136 (34%), Gaps = 1/136 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-T 69
S + ++R R++ + G AL+ E++ +++ +++ +L +
Sbjct: 5 SNTFSIKNWSENDRPREKLVANGSAALSDAELIAILIGSGSRDMSAVELSRLILNHAGNS 64
Query: 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
L + + L + IG+ A+ + +R + K +T ++
Sbjct: 65 LDKLGRLSVKELMKFKGIGEAKAITITAAMELGKRRASELPTTKPVITCSDDAFKVLQPI 124
Query: 130 YPMKNANNFAYCFSIN 145
F + N
Sbjct: 125 LGDLPHEEFWILYVNN 140
>gi|242237618|ref|YP_002985799.1| DNA repair protein RadC [Dickeya dadantii Ech703]
gi|242129675|gb|ACS83977.1| DNA repair protein RadC [Dickeya dadantii Ech703]
Length = 221
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ + G L+ E+L + L + +A+ LL++F +L G+ A +
Sbjct: 9 PREKLMSFGVETLSDVELLAIFLRTGVEGIHVMELAQHLLQQFGSLYGLMTADWTAFNAV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ V+ ++R+ + + + + L ++ + F F
Sbjct: 69 RGVGLSKYTQLQAVAELARRLFSCQLAQEDAMLSPEVTLQYLQLLLAHQEREIFLVMFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|229163410|ref|ZP_04291361.1| DNA repair protein radC [Bacillus cereus R309803]
gi|228619979|gb|EEK76854.1| DNA repair protein radC [Bacillus cereus R309803]
Length = 225
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCARYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|218905656|ref|YP_002453490.1| DNA repair protein [Bacillus cereus AH820]
gi|218538266|gb|ACK90664.1| DNA repair protein [Bacillus cereus AH820]
Length = 186
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKATQLIAAFELGRRMVRLEYRNRYSIRSPEDCARYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|78049584|ref|YP_365759.1| DNA repair protein RadC [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|123583963|sp|Q3BNA4|Y4028_XANC5 RecName: Full=UPF0758 protein XCV4028
gi|78038014|emb|CAJ25759.1| DNA repair protein RadC [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 225
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 50/131 (38%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
H+ H R R++ L +G AL+ E+L + + + +D A+ LL R L +
Sbjct: 2 HIHDWPTHERPREKLLARGATALSDAELLAIFVGSGLRGQDAVQTARDLLHRHGPLRLLL 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
P L + +G A +L +QR L + + L+ + +
Sbjct: 62 DRPAKTLARLPGLGPASACKLAAAMELAQRHLMSALERGEALSDPPSVGRYFSQRLRARA 121
Query: 135 ANNFAYCFSIN 145
FA F N
Sbjct: 122 YEVFAALFLDN 132
>gi|91791693|ref|YP_561344.1| DNA repair protein RadC [Shewanella denitrificans OS217]
gi|122969048|sp|Q12SF5|Y326_SHEDO RecName: Full=UPF0758 protein Sden_0326
gi|91713695|gb|ABE53621.1| DNA repair protein RadC [Shewanella denitrificans OS217]
Length = 225
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
RD+ LQ+G L+ E+L +++ I ++ + + LL F L + A + +I
Sbjct: 12 PRDKLLQQGAARLSDAELLAVLIRNGISGQNALTTGRLLLSHFGGLRSLMTATEDKVCQI 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ + S+RI + N + LT + R ++ FA
Sbjct: 72 PGVGPVKYAQLQAAAEISKRISRENLQRGQILTNPDLTRDYLMRQLADRSYEVFALLLLD 131
>gi|159184835|ref|NP_354601.2| DNA repair protein RadC [Agrobacterium tumefaciens str. C58]
gi|25009015|sp|Q8UEZ6|Y1607_AGRT5 RecName: Full=UPF0758 protein Atu1607
gi|159140119|gb|AAK87386.2| DNA repair protein [Agrobacterium tumefaciens str. C58]
Length = 280
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 63/138 (45%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
+ Y GH +RLR R+ G+ ALA YE+LEL+LFRLIPR+DTK IAKAL+ RF TLG
Sbjct: 55 EADAAHYHGHRDRLRTRYRDGGDAALADYELLELLLFRLIPRRDTKPIAKALIARFGTLG 114
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
V GAPL LLQE+ +G+ VAL+LKLV+ SQR+LK+ K+ L +
Sbjct: 115 SVLGAPLPLLQEVKGVGEAVALDLKLVASVSQRMLKSEIRNKQVLGSWSSVIDYCHAAMA 174
Query: 132 MKNANNFAYCFSI--NII 147
+ F F N++
Sbjct: 175 HETREQFRILFLDKRNVL 192
>gi|253583728|ref|ZP_04860926.1| DNA repair protein RadC [Fusobacterium varium ATCC 27725]
gi|251834300|gb|EES62863.1| DNA repair protein RadC [Fusobacterium varium ATCC 27725]
Length = 229
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RL++++++ G +A YEILE++L IPRKD K IAK LL+ F + G +FGA +
Sbjct: 8 GHRKRLKEKYMKSGYDAFHEYEILEILLTYSIPRKDVKPIAKKLLEVFGSTGKIFGADIK 67
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLT--PGQPCLISVERHYPMKNANN 137
L ++ IG+ A+ LKL+ ++ K N L + +
Sbjct: 68 ELIKVEGIGESSAVFLKLMGDIAKNSYKENLKDNDILNIKSKNDLISYLRGDIGFSKREE 127
Query: 138 FAYCFS---INII 147
F F N+I
Sbjct: 128 FKVLFLNSANNLI 140
>gi|288933007|ref|YP_003437066.1| DNA repair protein RadC [Klebsiella variicola At-22]
gi|290511800|ref|ZP_06551168.1| DNA repair protein RadC [Klebsiella sp. 1_1_55]
gi|288887736|gb|ADC56054.1| DNA repair protein RadC [Klebsiella variicola At-22]
gi|289775590|gb|EFD83590.1| DNA repair protein RadC [Klebsiella sp. 1_1_55]
Length = 221
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 50/121 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ G AL E+L L L R+D A+ALL+RF +L + A L +
Sbjct: 9 PREKMLQYGIEALTDVELLALFLRVGTRRQDVLGYAQALLQRFGSLYALLSADKAQLIAV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +G +LK ++ ++R + + L ++ + F F
Sbjct: 69 DGLGLAKYAQLKGIAELARRYFSSQLVEEAALVSPSTTREFLQSQLTEEEREIFMVIFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|126441393|ref|YP_001058030.1| DNA repair protein RadC [Burkholderia pseudomallei 668]
gi|171855114|sp|A3N6Q9|Y979_BURP6 RecName: Full=UPF0758 protein BURPS668_0979
gi|126220886|gb|ABN84392.1| DNA repair protein RadC [Burkholderia pseudomallei 668]
Length = 278
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A
Sbjct: 63 RDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDF 122
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + IG L V ++R L + + + + F
Sbjct: 123 KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCL 182
Query: 142 FSI 144
F
Sbjct: 183 FLD 185
>gi|328954004|ref|YP_004371338.1| DNA repair protein RadC [Desulfobacca acetoxidans DSM 11109]
gi|328454328|gb|AEB10157.1| DNA repair protein RadC [Desulfobacca acetoxidans DSM 11109]
Length = 230
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 58/133 (43%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K + Y GH +RLR RFLQ G +L YE+LEL+L IPR D K AK LL F +
Sbjct: 5 KPTPPHYHGHRDRLRARFLQAGAESLQDYELLELLLTYAIPRADVKEWAKGLLSHFGSFA 64
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
V A L ++ +G+ A ++LV ++ LK ++ + +
Sbjct: 65 EVLDASHQELVKVKGLGEYSATLIRLVKACAEYYLKEQAIKRRSIPSLPVLIDYCRTSMG 124
Query: 132 MKNANNFAYCFSI 144
F F
Sbjct: 125 GLKDEQFRVIFLN 137
>gi|288553589|ref|YP_003425524.1| DNA repair protein RadC [Bacillus pseudofirmus OF4]
gi|288544749|gb|ADC48632.1| DNA repair protein RadC [Bacillus pseudofirmus OF4]
Length = 230
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 49/123 (39%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R+R L++G N L E+L ++L ++ +A +L F L + A + L
Sbjct: 14 HQRPRERMLKEGANVLTNQELLAILLRNGTKKESALQLAGKMLDSFDGLTLLRTATIEEL 73
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
IN IG A+E++ V +RI K + + V +F
Sbjct: 74 CHINGIGTAKAVEIQAVMELGRRIHAVPTEEKYVIRSPEDVSNFVMEDMRFLTQEHFIAL 133
Query: 142 FSI 144
+
Sbjct: 134 YLN 136
>gi|167823105|ref|ZP_02454576.1| DNA repair protein RadC [Burkholderia pseudomallei 9]
Length = 217
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A
Sbjct: 2 RDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDF 61
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + IG L V ++R L + + + + F
Sbjct: 62 KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCL 121
Query: 142 FSI 144
F
Sbjct: 122 FLD 124
>gi|157963648|ref|YP_001503682.1| DNA repair protein RadC [Shewanella pealeana ATCC 700345]
gi|189029404|sp|A8H9B0|Y3837_SHEPA RecName: Full=UPF0758 protein Spea_3837
gi|157848648|gb|ABV89147.1| DNA repair protein RadC [Shewanella pealeana ATCC 700345]
Length = 225
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 44/120 (36%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G L+ E+L ++L + +A+ ++ F L + A + +
Sbjct: 12 PREKLLSQGVKQLSDAELLAVLLRVGLKGLSAVELARIMINEFGGLRSLLNASQAQVCRL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +++ RI + N K L+ + R + FA
Sbjct: 72 DGIGPVKFAQMQAAVELGARISQENLKRGKILSDPDLTRDYLMRQLSDRAYEVFAILLLD 131
>gi|323179392|gb|EFZ64959.1| DNA repair protein radC [Escherichia coli 1180]
Length = 224
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 48/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPAMTREFLQSQLTGEEREIFMVIFLD 131
>gi|262374189|ref|ZP_06067465.1| DNA repair protein [Acinetobacter junii SH205]
gi|262310747|gb|EEY91835.1| DNA repair protein [Acinetobacter junii SH205]
Length = 246
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R+R L +G +L+ E+L + L + +++ L++ F L +F A L
Sbjct: 12 WPEQERPRERLLSQGPQSLSDAELLAIFLRSGSKQHSAVELSRILIQHFGGLNPIFDASL 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYPMKNANN 137
L + N I +L V +R L + ++ L L + +
Sbjct: 72 EDLSQFNGIASTKYAQLMAVKELGRRYLNNYFHQQRLCLDHSSLVLDYLRYELLGEKQEV 131
Query: 138 FAYCFSI 144
FA
Sbjct: 132 FAVLCLD 138
>gi|296157154|ref|ZP_06839990.1| DNA repair protein RadC [Burkholderia sp. Ch1-1]
gi|295892490|gb|EFG72272.1| DNA repair protein RadC [Burkholderia sp. Ch1-1]
Length = 253
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G + L+ E++ LIL +P D +A+ALL+RF +L + A ++
Sbjct: 41 PRERLIEQGASVLSDTELIVLILGSGLPGHDVFDVARALLERFGSLRAMLDATYTDFADL 100
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +L + ++R L ++ + + + + F F
Sbjct: 101 RGIGPAKKTQLLAIMEMARRSLVDKMRMRSLINSPEAVENYLRLRIGGRPQEIFVSLFLD 160
>gi|194364059|ref|YP_002026669.1| DNA repair protein RadC [Stenotrophomonas maltophilia R551-3]
gi|238693502|sp|B4STE3|Y281_STRM5 RecName: Full=UPF0758 protein Smal_0281
gi|194346863|gb|ACF49986.1| DNA repair protein RadC [Stenotrophomonas maltophilia R551-3]
Length = 234
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 1/130 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ + +G AL+ E+L L L +D A+ LL+ L +
Sbjct: 4 HDWPEQERPREKLMARGPTALSDAELLALFLGSGFGGRDAVQTARDLLQAHGPLRVLLDR 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFL-TPGQPCLISVERHYPMKNA 135
P L + +G + L + R L A + + ++ +
Sbjct: 64 PARELARLPGLGPARSCTLAAGLELAHRYLAAELEHGEAVGNNPAAVGRYLQHRLRGQAR 123
Query: 136 NNFAYCFSIN 145
F F N
Sbjct: 124 EIFMALFLDN 133
>gi|42783591|ref|NP_980838.1| DNA repair protein RadC [Bacillus cereus ATCC 10987]
gi|54036227|sp|Q72ZX2|Y4545_BACC1 RecName: Full=UPF0758 protein BCE_4545
gi|42739520|gb|AAS43446.1| DNA repair protein RadC [Bacillus cereus ATCC 10987]
Length = 225
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGVAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|167901650|ref|ZP_02488855.1| DNA repair protein RadC [Burkholderia pseudomallei NCTC 13177]
Length = 216
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A
Sbjct: 1 RDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDF 60
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + IG L V ++R L + + + + F
Sbjct: 61 KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCL 120
Query: 142 FSI 144
F
Sbjct: 121 FLD 123
>gi|260870368|ref|YP_003236770.1| protein associated with replication fork [Escherichia coli O111:H-
str. 11128]
gi|257766724|dbj|BAI38219.1| protein associated with replication fork [Escherichia coli O111:H-
str. 11128]
Length = 222
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 48/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPAMTREFLQSQLTGEEREIFMVIFLD 129
>gi|308272571|emb|CBX29175.1| DNA repair protein radC homolog [uncultured Desulfobacterium sp.]
Length = 233
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 50/135 (37%), Gaps = 1/135 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
S + + +R R++ L+KG +L+ E+L ++L + +A+ ++ +F T
Sbjct: 5 SNPTGIKSWPKDDRPREKLLKKGAGSLSNSELLAILLRTGVEGSSAIDLARQIIDKFGTF 64
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLISVERH 129
+ + + ++ +G ++ +R + S ++ + Q + +
Sbjct: 65 RNMSHSDIREWKKFKGMGPAKIAQINAALEIGRRFREDEVISARQQIVSAQDIVNIIMPQ 124
Query: 130 YPMKNANNFAYCFSI 144
+
Sbjct: 125 MRDLKTEVSKIVYLN 139
>gi|167909900|ref|ZP_02496991.1| DNA repair protein RadC [Burkholderia pseudomallei 112]
Length = 218
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A
Sbjct: 3 RDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDF 62
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + IG L V ++R L + + + + F
Sbjct: 63 KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCL 122
Query: 142 FSI 144
F
Sbjct: 123 FLD 125
>gi|317050107|ref|YP_004117755.1| DNA repair protein RadC [Pantoea sp. At-9b]
gi|316951724|gb|ADU71199.1| DNA repair protein RadC [Pantoea sp. At-9b]
Length = 218
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 44/121 (36%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ KG AL E+L + L +A+ +L F +L + + L I
Sbjct: 6 PREKLALKGAEALNDEELLAIFLRTGSCGVSVMVLARQMLNEFGSLYRIMSSSKEELVSI 65
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +++ V+ +R + + + + Q ++ + F F
Sbjct: 66 KGVGVAKMTQIQAVAELGRRFFASQLARENVMENPQVTRHYLQSVLAHQEREIFMALFLD 125
Query: 145 N 145
N
Sbjct: 126 N 126
>gi|52141051|ref|YP_085777.1| DNA repair protein RadC [Bacillus cereus E33L]
gi|81686057|sp|Q633Z0|Y4198_BACCZ RecName: Full=UPF0758 protein BCE33L4198
gi|51974520|gb|AAU16070.1| DNA repair protein [Bacillus cereus E33L]
Length = 225
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGVAKASQLIAAFELGRRMVRLEYQNRYSIRNPEDCARYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|196039378|ref|ZP_03106684.1| DNA repair protein [Bacillus cereus NVH0597-99]
gi|196030005|gb|EDX68606.1| DNA repair protein [Bacillus cereus NVH0597-99]
Length = 208
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGVAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|293604225|ref|ZP_06686633.1| DNA repair protein RadC [Achromobacter piechaudii ATCC 43553]
gi|292817450|gb|EFF76523.1| DNA repair protein RadC [Achromobacter piechaudii ATCC 43553]
Length = 225
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 51/127 (40%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+ H R R+R L+ G AL E+L L L IP + ++ LL+RF L G+ GA
Sbjct: 7 LSKHERPRERLLRHGAGALQDAELLALGLRTGIPGLNVVDLSNRLLERFCGLRGLLGATP 66
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L + +G A L + ++R ++ + + + L + +
Sbjct: 67 EELMTVPGLGAAKACTLAALLELARRAIEEDLTRPESLRHPGQVKQYCLTALGHRRVEHC 126
Query: 139 AYCFSIN 145
+ N
Sbjct: 127 IALYLDN 133
>gi|254419835|ref|ZP_05033559.1| DNA repair protein RadC [Brevundimonas sp. BAL3]
gi|196186012|gb|EDX80988.1| DNA repair protein RadC [Brevundimonas sp. BAL3]
Length = 243
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 10 PSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT 69
P + GH +RLR+R + G AL YE+LEL+LFR IP KD K +AK LL RF
Sbjct: 7 PEPKPKPRHSGHRDRLRERAAKGGLGALPDYELLELLLFRSIPYKDVKPLAKDLLARFGG 66
Query: 70 LGGVFGAPLHLLQE--------INR-IGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
L G+ A +++ + + VAL+L+L+ ++RI + + + ++
Sbjct: 67 LEGIGAASHEAVEDQVARTLAYVPGKATRAVALDLQLIFDVTRRIAREPTAKRPVISSWS 126
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
L V + F +
Sbjct: 127 ALLAYVRVALQHEPREQFRVLYLD 150
>gi|189184090|ref|YP_001937875.1| DNA repair protein RadC [Orientia tsutsugamushi str. Ikeda]
gi|189180861|dbj|BAG40641.1| DNA repair protein RadC [Orientia tsutsugamushi str. Ikeda]
Length = 226
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 17 DYIGHHNRLRDRFLQKGE-NALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFG 75
YIGH RL++RFL+ ++L YE+LEL+LF IPR+D K IAK LLK+F TL V
Sbjct: 5 YYIGHRKRLKERFLRSIPSDSLPDYELLELLLFHSIPRQDVKPIAKELLKQFTTLSNVVY 64
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
A L + + V + + LV +RIL + L+ L ++
Sbjct: 65 AEKDKLMSLPMVSNSVCVPIFLVKEFIRRILAQKVINQHVLSSWSALLEYLKITMGKAKT 124
Query: 136 NNFAYCFSI--NII 147
F F NII
Sbjct: 125 EQFRVLFLNKKNII 138
>gi|325928297|ref|ZP_08189499.1| DNA replication and repair protein RadC [Xanthomonas perforans
91-118]
gi|325541334|gb|EGD12874.1| DNA replication and repair protein RadC [Xanthomonas perforans
91-118]
Length = 243
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 52/135 (38%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
S+ H+ H R R++ L +G AL+ E+L + + + +D A+ LL R L
Sbjct: 16 SRHMHIHDWPTHERPREKLLARGATALSDAELLAIFVGSGLRGQDAVQTARDLLHRHGPL 75
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+ P L + +G A +L +QR L + + L+ +
Sbjct: 76 RLLLDRPAKTLARLPGLGPASACKLAAAMELAQRHLMSALERGEALSDPPSVGRYFSQRL 135
Query: 131 PMKNANNFAYCFSIN 145
+ FA F N
Sbjct: 136 RARAYEVFAALFLDN 150
>gi|229198583|ref|ZP_04325285.1| DNA repair protein radC [Bacillus cereus m1293]
gi|228584865|gb|EEK42981.1| DNA repair protein radC [Bacillus cereus m1293]
Length = 225
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGVAKASQLIAAFELGRRMVRLEYQNRYSIRSPEDCARYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|167569090|ref|ZP_02361964.1| DNA repair protein RadC [Burkholderia oklahomensis C6786]
Length = 221
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 2/127 (1%)
Query: 20 GHHNR--LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
H R R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A
Sbjct: 2 AHRGRDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAA 61
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ + IG L V ++R L + + + +
Sbjct: 62 PDDFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVEDYLRLLIGTRQHEV 121
Query: 138 FAYCFSI 144
F F
Sbjct: 122 FVCLFLD 128
>gi|300919795|ref|ZP_07136270.1| DNA repair protein RadC [Escherichia coli MS 115-1]
gi|300413148|gb|EFJ96458.1| DNA repair protein RadC [Escherichia coli MS 115-1]
Length = 224
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMRAESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 131
>gi|121595744|ref|YP_987640.1| DNA repair protein RadC [Acidovorax sp. JS42]
gi|171769520|sp|A1WBD9|Y3450_ACISJ RecName: Full=UPF0758 protein Ajs_3450
gi|120607824|gb|ABM43564.1| DNA replication and repair protein RadC [Acidovorax sp. JS42]
Length = 238
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 14/134 (10%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF--------------ATL 70
R++ L +G AL+ E+L ++L + K +A+ LL +
Sbjct: 12 PREKLLARGPAALSDAELLAILLRTGLAGKGVLQLAQELLDDPVRDSATGRSAGGGFGGI 71
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
G+ A LQ I +G EL V ++R L ++ Q ++ H
Sbjct: 72 AGLLHASSQDLQRIKGLGPAKRAELMAVLELARRALAQQLREREVFDSPQAVQHYLQLHL 131
Query: 131 PMKNANNFAYCFSI 144
+ FA F
Sbjct: 132 AGRTHEVFAVLFLD 145
>gi|91784962|ref|YP_560168.1| DNA repair protein RadC [Burkholderia xenovorans LB400]
gi|123168147|sp|Q13UX3|Y3578_BURXL RecName: Full=UPF0758 protein Bxeno_A3578
gi|91688916|gb|ABE32116.1| DNA replication and repair protein RadC [Burkholderia xenovorans
LB400]
Length = 253
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G + L+ E++ LIL +P D +A+ LL RF +L + A ++
Sbjct: 41 PRERLIEQGASVLSDTELIVLILGSGLPGHDVFDVARTLLDRFGSLRAMLDATYTDFADL 100
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +L + ++R L ++ + + + + F F
Sbjct: 101 RGIGPAKKTQLLAIMEMARRSLVDKMRMRSLINSPEAVENYLRLRIGGRPQEIFVSLFLD 160
>gi|332112547|gb|EGJ12340.1| hypothetical protein RBXJA2T_18503 [Rubrivivax benzoatilyticus JA2]
Length = 225
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ LQ+G ALA E+L L+L +P + +A+ +L GG+ A L
Sbjct: 10 DQRPREKLLQRGPGALADGELLALLLRTGLPGEGVFELAQRVLAACGGAGGLLAATPATL 69
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +G EL V ++R L A V + FA
Sbjct: 70 GRVKGLGPAKQAELLAVMELARRALAAKVRAAPVFDSPDKVKDYVALQLAGREHEVFAVL 129
Query: 142 FSI 144
F
Sbjct: 130 FLD 132
>gi|149928073|ref|ZP_01916321.1| DNA repair protein RadC [Limnobacter sp. MED105]
gi|149823261|gb|EDM82497.1| DNA repair protein RadC [Limnobacter sp. MED105]
Length = 149
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 2/128 (1%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
H+R R+R +++G AL+ E+L + L +P K +A+ ++ +F L + L
Sbjct: 6 WPKHDRPRERLIKQGAQALSDAELLAIFLRTGLPGKSAVDLAREMISQFGGLQNLNRVSL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF--LTPGQPCLISVERHYPMKNAN 136
++ +G+ +L+ ++R L + L V +
Sbjct: 66 AEWIQVRGLGEAKYAQLRACLEMAKRCLSHELQEAEQGLLASPDLFEQFVRAQIGLSEVE 125
Query: 137 NFAYCFSI 144
NF
Sbjct: 126 NFLVIALD 133
>gi|319943236|ref|ZP_08017519.1| DNA repair protein RadC [Lautropia mirabilis ATCC 51599]
gi|319743778|gb|EFV96182.1| DNA repair protein RadC [Lautropia mirabilis ATCC 51599]
Length = 278
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 1/141 (0%)
Query: 5 RMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
R + P + L R R+R L+ G AL+ E+L ++L + +A LL
Sbjct: 45 RRDRHPLDGAPLAQWPEAERPRERLLRHGAEALSSAELLAILLRTGTRGQSAVGLALQLL 104
Query: 65 KRFA-TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
+ +L + L + +G A L +V ++R+ + L
Sbjct: 105 NQSNRSLTRLLSTEPAQLMRMVGLGPARATTLAVVIELARRVAREQMEQNTLLDNPDAVR 164
Query: 124 ISVERHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 165 EYLGLTLRGLEHEAFVALFLN 185
>gi|284008822|emb|CBA75590.1| DNA repair protein [Arsenophonus nasoniae]
Length = 222
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 46/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G ++L+ E+L + L +P +A+ LLK F +L + A
Sbjct: 10 PREKLLAYGASSLSDKELLAIFLRTGLPGFPVLMLAENLLKEFGSLHKLLTADYQQFSAH 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ + ++R + + + + Y ++ F F
Sbjct: 70 KGLGVCKYSQLQAIGEVAKRFFTQQLINQSIMRSPKHLKKYLLDFYLGQDREIFIVLFLN 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|53718558|ref|YP_107544.1| DNA repair protein RadC [Burkholderia pseudomallei K96243]
gi|251766710|ref|ZP_04819773.1| DNA repair protein RadC [Burkholderia mallei PRL-20]
gi|52208972|emb|CAH34911.1| putative DNA repair protein [Burkholderia pseudomallei K96243]
gi|243064993|gb|EES47179.1| DNA repair protein RadC [Burkholderia mallei PRL-20]
Length = 236
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A
Sbjct: 21 RDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDF 80
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + IG L V ++R L + + + + F
Sbjct: 81 KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCL 140
Query: 142 FSI 144
F
Sbjct: 141 FLD 143
>gi|148284968|ref|YP_001249058.1| DNA repair protein [Orientia tsutsugamushi str. Boryong]
gi|146740407|emb|CAM80876.1| DNA repair protein [Orientia tsutsugamushi str. Boryong]
Length = 226
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 17 DYIGHHNRLRDRFLQKGE-NALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFG 75
YIGH RL++RFL+ ++L YE+LEL+LF I R+D K IAK LLK+F TL V
Sbjct: 5 YYIGHRKRLKERFLRSIPSDSLPDYELLELLLFHSISRQDVKPIAKELLKQFTTLSNVIY 64
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
A L + + V + + LV +RIL + L+ L ++
Sbjct: 65 AEKDKLMSVPMVSNSVCIPIFLVKEFIRRILAQKVINQHVLSSWSALLEYLKITMGKAKT 124
Query: 136 NNFAYCFSI--NII 147
F F NII
Sbjct: 125 EQFRVLFLNKKNII 138
>gi|91216072|ref|ZP_01253040.1| putative DNA repair protein [Psychroflexus torquis ATCC 700755]
gi|91185589|gb|EAS71964.1| putative DNA repair protein [Psychroflexus torquis ATCC 700755]
Length = 232
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 1/139 (0%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-R 66
K SK + +R R++ + KG+++L+ E+L +++ + + K +L
Sbjct: 2 KPSSKSFSIKNWSEGDRPREKLIHKGKSSLSDAELLAILIGSGNREESAVELCKRILHAS 61
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
+L + L LQ+ IG+ A+ + R + ++ + +
Sbjct: 62 ENSLQKLAKFNLSQLQDFKGIGEAKAISIIAALEIGNRRGAESVKELNKISTSKDVFTIM 121
Query: 127 ERHYPMKNANNFAYCFSIN 145
+ F N
Sbjct: 122 HPFLGDLDHEQFWILMLNN 140
>gi|188495548|ref|ZP_03002818.1| DNA repair protein RadC [Escherichia coli 53638]
gi|188490747|gb|EDU65850.1| DNA repair protein RadC [Escherichia coli 53638]
Length = 222
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 HGIGVAKFAQLKGIAELARRYYNVRMRAESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|254478306|ref|ZP_05091686.1| DNA repair protein RadC [Carboxydibrachium pacificum DSM 12653]
gi|214035771|gb|EEB76465.1| DNA repair protein RadC [Carboxydibrachium pacificum DSM 12653]
Length = 228
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 53/130 (40%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + + R R+R ++ G L+ E++ +I+ R++ S+A+ L+ L +
Sbjct: 8 RIKDLPYEERPRERLIKYGPQVLSNAELIAIIIGTGSRRENAISLAQKLITEERGLKFIV 67
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
+ + L I IG A++LK +R++ + +T + + + +
Sbjct: 68 NSSVEKLANIRGIGIAKAVKLKAAVELGRRLMLSTQGENFSVTSPEDVINLLMEEMRYLS 127
Query: 135 ANNFAYCFSI 144
+F
Sbjct: 128 KEHFKVVMLN 137
>gi|324328357|gb|ADY23617.1| hypothetical protein YBT020_21945 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 225
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGVAKASQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|237728935|ref|ZP_04559416.1| DNA repair protein radC [Citrobacter sp. 30_2]
gi|226909557|gb|EEH95475.1| DNA repair protein radC [Citrobacter sp. 30_2]
Length = 234
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G ++L E+L L L + KD ++AK +L+ F +L G+ A +
Sbjct: 22 PREKLLAQGASSLTDVELLALFLRTGLQGKDVLTLAKEMLQHFESLYGLLSADYMDFSYV 81
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +LK ++ ++R ++ L + ++ + F F
Sbjct: 82 QGIGIAKYAQLKGIAELARRYYNVRVIEERALLSPEMAREFLQSQLSQEEREIFLVIFMD 141
>gi|295695338|ref|YP_003588576.1| DNA repair protein RadC [Bacillus tusciae DSM 2912]
gi|295410940|gb|ADG05432.1| DNA repair protein RadC [Bacillus tusciae DSM 2912]
Length = 228
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 1/122 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L G L E+L ++L + +A+ LL RF L G+ A L
Sbjct: 15 ERPRERLLTFGPEQLTNAELLAILLRTGSHGRSALELAQRLLTRFEGLTGLLAADSRELM 74
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
E + +G A ++ +R+ +AN + K + + + +F
Sbjct: 75 EESGMGPAKATQVLAALEFGRRVQRANPAPKP-IHSPNDVASRLMERLQFLSKEHFVVLH 133
Query: 143 SI 144
Sbjct: 134 LD 135
>gi|218233414|ref|YP_002369261.1| DNA repair protein RadC [Bacillus cereus B4264]
gi|228923207|ref|ZP_04086497.1| DNA repair protein radC [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228960730|ref|ZP_04122369.1| DNA repair protein radC [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|229111925|ref|ZP_04241469.1| DNA repair protein radC [Bacillus cereus Rock1-15]
gi|229147024|ref|ZP_04275384.1| DNA repair protein radC [Bacillus cereus BDRD-ST24]
gi|229152656|ref|ZP_04280844.1| DNA repair protein radC [Bacillus cereus m1550]
gi|296504945|ref|YP_003666645.1| DNA repair protein radC [Bacillus thuringiensis BMB171]
gi|226736617|sp|B7HE86|Y4572_BACC4 RecName: Full=UPF0758 protein BCB4264_A4572
gi|218161371|gb|ACK61363.1| DNA repair protein RadC [Bacillus cereus B4264]
gi|228630802|gb|EEK87443.1| DNA repair protein radC [Bacillus cereus m1550]
gi|228636412|gb|EEK92882.1| DNA repair protein radC [Bacillus cereus BDRD-ST24]
gi|228671489|gb|EEL26789.1| DNA repair protein radC [Bacillus cereus Rock1-15]
gi|228798946|gb|EEM45921.1| DNA repair protein radC [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228836413|gb|EEM81764.1| DNA repair protein radC [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|296325997|gb|ADH08925.1| DNA repair protein radC [Bacillus thuringiensis BMB171]
Length = 225
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L +F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHQFDGLRMLKDATLEELI 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ IG A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGIGISKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCAKYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|196044826|ref|ZP_03112060.1| DNA repair protein [Bacillus cereus 03BB108]
gi|196024314|gb|EDX62987.1| DNA repair protein [Bacillus cereus 03BB108]
Length = 192
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|323703616|ref|ZP_08115260.1| DNA repair protein RadC [Desulfotomaculum nigrificans DSM 574]
gi|323531449|gb|EGB21344.1| DNA repair protein RadC [Desulfotomaculum nigrificans DSM 574]
Length = 227
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R +++G +L+ ++L ++L + +A ++ RF L + A + L
Sbjct: 13 QRPRERMIKEGPGSLSDIDLLAIMLRTGTAKASAMELAAEIIGRFKDLRALAQATVEELS 72
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I IG A+++K +R+ + + + + + +F
Sbjct: 73 AIKGIGPVKAVQVKAALELGRRLAALPTEERTVIRCPEDVAALLMEDLRDLDREHFLALL 132
Query: 143 SI 144
Sbjct: 133 LN 134
>gi|257469304|ref|ZP_05633398.1| DNA repair protein radC [Fusobacterium ulcerans ATCC 49185]
gi|317063551|ref|ZP_07928036.1| DNA repair protein radC [Fusobacterium ulcerans ATCC 49185]
gi|313689227|gb|EFS26062.1| DNA repair protein radC [Fusobacterium ulcerans ATCC 49185]
Length = 229
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RL++++++ G A YEILE++L IPRKD K IAK LL+ F + G +FGA +
Sbjct: 8 GHRKRLKEKYMKSGYEAFHEYEILEILLTYSIPRKDVKPIAKNLLEVFGSTGKIFGADIK 67
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLT--PGQPCLISVERHYPMKNANN 137
L +++ IG+ A+ LKL+ ++ K N L + +
Sbjct: 68 ELLKVDGIGESTAVFLKLMGDIAKNSYKENLKDNDILNIKSKNDLISYLRGDIGFSKREE 127
Query: 138 FAYCFS---INII 147
F F N+I
Sbjct: 128 FKVLFLNSANNLI 140
>gi|126172629|ref|YP_001048778.1| DNA repair protein RadC [Shewanella baltica OS155]
gi|160873513|ref|YP_001552829.1| DNA repair protein RadC [Shewanella baltica OS195]
gi|217971608|ref|YP_002356359.1| DNA repair protein RadC [Shewanella baltica OS223]
gi|304411668|ref|ZP_07393280.1| DNA repair protein RadC [Shewanella baltica OS183]
gi|307306280|ref|ZP_07586025.1| DNA repair protein RadC [Shewanella baltica BA175]
gi|166218793|sp|A3CZJ6|Y377_SHEB5 RecName: Full=UPF0758 protein Sbal_0377
gi|189029402|sp|A9KY04|Y388_SHEB9 RecName: Full=UPF0758 protein Sbal195_0388
gi|254789658|sp|B8E4J5|Y402_SHEB2 RecName: Full=UPF0758 protein Sbal223_0402
gi|125995834|gb|ABN59909.1| DNA repair protein RadC [Shewanella baltica OS155]
gi|160859035|gb|ABX47569.1| DNA repair protein RadC [Shewanella baltica OS195]
gi|217496743|gb|ACK44936.1| DNA repair protein RadC [Shewanella baltica OS223]
gi|304349856|gb|EFM14262.1| DNA repair protein RadC [Shewanella baltica OS183]
gi|306911153|gb|EFN41580.1| DNA repair protein RadC [Shewanella baltica BA175]
gi|315265742|gb|ADT92595.1| DNA repair protein RadC [Shewanella baltica OS678]
Length = 225
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
RD+ LQKG L+ E+L ++L + + +A++L+ F L + AP + + +
Sbjct: 12 PRDKLLQKGAGQLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNLLCAPRNQVCRL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ + ++R+ + N + LT + R ++ FA
Sbjct: 72 PGVGPVKYAQLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLADRSYEVFAVLLLD 131
>gi|302389307|ref|YP_003825128.1| DNA replication and repair protein RadC [Thermosediminibacter
oceani DSM 16646]
gi|302199935|gb|ADL07505.1| DNA replication and repair protein RadC [Thermosediminibacter
oceani DSM 16646]
Length = 237
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 3/131 (2%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV--- 73
+ R R+RF + G L+ E+L L++ + +A +LK G+
Sbjct: 14 KDLPREERPRERFQRYGAEVLSDAELLALLIRTGTVSESALVLAHRILKGDGGKAGLEFV 73
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
A + L +I IG A+++K +RI + ++ +
Sbjct: 74 ARAGVEELSKIKGIGLAKAVQIKAAVELGRRISAYCRNDDIVISSPADVKKLLMEEMRFL 133
Query: 134 NANNFAYCFSI 144
+F
Sbjct: 134 EKEHFKVILLN 144
>gi|254196814|ref|ZP_04903238.1| DNA repair protein RadC [Burkholderia pseudomallei S13]
gi|169653557|gb|EDS86250.1| DNA repair protein RadC [Burkholderia pseudomallei S13]
Length = 283
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A
Sbjct: 68 RDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDF 127
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + IG L V ++R L + + + + F
Sbjct: 128 KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCL 187
Query: 142 FSI 144
F
Sbjct: 188 FLD 190
>gi|319952212|ref|YP_004163479.1| DNA repair protein radc [Cellulophaga algicola DSM 14237]
gi|319420872|gb|ADV47981.1| DNA repair protein RadC [Cellulophaga algicola DSM 14237]
Length = 232
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 46/130 (35%), Gaps = 1/130 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGVFG 75
++ R++ +QKG+ L+ E++ +++ + ++K +L + +
Sbjct: 11 KDWADDDKPREKLIQKGKAVLSDAELIAILIGSGSRNESAVELSKRILASVNNNINELGK 70
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L + IG+ A+ + +R + +T + ++
Sbjct: 71 LSVKKLMQFKGIGEAKAVSITAALEIGRRRRGDDALKITKITSSKSVFELLQPKMGDLPH 130
Query: 136 NNFAYCFSIN 145
F + N
Sbjct: 131 EEFWVVYLNN 140
>gi|206975949|ref|ZP_03236859.1| DNA repair protein RadC [Bacillus cereus H3081.97]
gi|217961943|ref|YP_002340513.1| DNA repair protein RadC [Bacillus cereus AH187]
gi|222097900|ref|YP_002531957.1| DNA repair protein radc [Bacillus cereus Q1]
gi|229141192|ref|ZP_04269731.1| DNA repair protein radC [Bacillus cereus BDRD-ST26]
gi|226736618|sp|B7HQL1|Y4587_BACC7 RecName: Full=UPF0758 protein BCAH187_A4587
gi|254764428|sp|B9IZ29|Y4241_BACCQ RecName: Full=UPF0758 protein BCQ_4241
gi|206745701|gb|EDZ57098.1| DNA repair protein RadC [Bacillus cereus H3081.97]
gi|217065490|gb|ACJ79740.1| DNA repair protein RadC [Bacillus cereus AH187]
gi|221241958|gb|ACM14668.1| DNA repair protein [Bacillus cereus Q1]
gi|228642233|gb|EEK98525.1| DNA repair protein radC [Bacillus cereus BDRD-ST26]
Length = 225
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKDETVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGVAKASQLIAAFELGRRMVRLEYQNRYSIRSPEDCARYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|152998927|ref|YP_001364608.1| DNA repair protein RadC [Shewanella baltica OS185]
gi|166218794|sp|A6WIA6|Y376_SHEB8 RecName: Full=UPF0758 protein Shew185_0376
gi|151363545|gb|ABS06545.1| DNA repair protein RadC [Shewanella baltica OS185]
Length = 225
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
RD+ LQKG L+ E+L ++L + + +A++L+ F L + AP + + +
Sbjct: 12 PRDKLLQKGAGQLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNLLCAPRNQVCRL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ + ++R+ + N + LT + R ++ FA
Sbjct: 72 PGVGPVKYAQLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLADRSYEVFAVLLLD 131
>gi|78067302|ref|YP_370071.1| DNA repair protein RadC [Burkholderia sp. 383]
gi|123567821|sp|Q39DN9|Y5833_BURS3 RecName: Full=UPF0758 protein Bcep18194_A5833
gi|77968047|gb|ABB09427.1| DNA replication and repair protein RadC [Burkholderia sp. 383]
Length = 257
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 7/150 (4%)
Query: 2 EDFRMSKAPSKDSHLDYIGHH-------NRLRDRFLQKGENALAYYEILELILFRLIPRK 54
+ + P + R R+R L++G AL E++ L+L P
Sbjct: 15 DSTDLPADPPGRVLPLHRLKRRPRGWRPERPRERLLERGPAALTDDELIALLLGTGKPGH 74
Query: 55 DTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK 114
D + A+ L+ +F +L G+ A + IG + L V+ ++R+LK K+
Sbjct: 75 DVFATARVLVTQFKSLHGLLEATADDFEAHPGIGPARSARLVAVTEIARRMLKEKAHEKQ 134
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + + FA +
Sbjct: 135 PIDSPGAVEDYLRLKIGARPYEVFAAVYLD 164
>gi|238754770|ref|ZP_04616122.1| DNA repair protein radC [Yersinia ruckeri ATCC 29473]
gi|238707078|gb|EEP99443.1| DNA repair protein radC [Yersinia ruckeri ATCC 29473]
Length = 222
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G AL+ E+L + L +P ++A+ L+ F +L + A L
Sbjct: 10 PREKLLKHGAEALSDTELLAIFLRTGMPGLHVMAMAEHLIAEFGSLYRLMSADYQTLCAQ 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+GK +++ +S + R + + + + ++ + F F
Sbjct: 70 KGMGKSKYSQIQAISELASRCFSNHMVKENAMLNPRMTQKYLQNVLSEREREVFLVMFLD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|152976871|ref|YP_001376388.1| DNA repair protein RadC [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|152025623|gb|ABS23393.1| DNA repair protein RadC [Bacillus cytotoxicus NVH 391-98]
Length = 185
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 51/122 (41%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R + +G ++L+ E+L ++L + ++A +L+ F L + A + +
Sbjct: 11 EQPRERLISEGASSLSNRELLAILLRTGSKEESVLTLADKILRHFDGLRMLRDATMEEIT 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + NF +
Sbjct: 71 SIHGVGVAKASQLIAAFELGRRMVRLEYQHRYSIRSPEDCASYMMEEMRFLQQENFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|53726241|ref|YP_103794.1| DNA repair protein RadC [Burkholderia mallei ATCC 23344]
gi|76809094|ref|YP_332551.1| DNA repair protein RadC [Burkholderia pseudomallei 1710b]
gi|121598892|ref|YP_993943.1| DNA repair protein RadC [Burkholderia mallei SAVP1]
gi|124383479|ref|YP_001027007.1| DNA repair protein RadC [Burkholderia mallei NCTC 10229]
gi|126449373|ref|YP_001081630.1| DNA repair protein RadC [Burkholderia mallei NCTC 10247]
gi|126455030|ref|YP_001065265.1| DNA repair protein RadC [Burkholderia pseudomallei 1106a]
gi|134281216|ref|ZP_01767925.1| DNA repair protein RadC [Burkholderia pseudomallei 305]
gi|217419932|ref|ZP_03451438.1| DNA repair protein RadC [Burkholderia pseudomallei 576]
gi|226194411|ref|ZP_03790009.1| DNA repair protein RadC [Burkholderia pseudomallei Pakistan 9]
gi|238562657|ref|ZP_00440036.2| DNA repair protein RadC [Burkholderia mallei GB8 horse 4]
gi|242316183|ref|ZP_04815199.1| DNA repair protein RadC [Burkholderia pseudomallei 1106b]
gi|254175496|ref|ZP_04882156.1| DNA repair protein RadC [Burkholderia mallei ATCC 10399]
gi|254190872|ref|ZP_04897379.1| DNA repair protein RadC [Burkholderia pseudomallei Pasteur 52237]
gi|254202496|ref|ZP_04908859.1| DNA repair protein RadC [Burkholderia mallei FMH]
gi|254207831|ref|ZP_04914181.1| DNA repair protein RadC [Burkholderia mallei JHU]
gi|254356274|ref|ZP_04972550.1| DNA repair protein RadC [Burkholderia mallei 2002721280]
gi|81604404|sp|Q62HM6|Y2230_BURMA RecName: Full=UPF0758 protein BMA2230
gi|123599994|sp|Q3JV52|Y1139_BURP1 RecName: Full=UPF0758 protein BURPS1710b_1139
gi|171769294|sp|A1V6U0|Y4446_BURMS RecName: Full=UPF0758 protein BMASAVP1_A2646
gi|171769824|sp|A2S4Y8|Y3320_BURM9 RecName: Full=UPF0758 protein BMA10229_A1020
gi|171855041|sp|A3MMZ4|Y4599_BURM7 RecName: Full=UPF0758 protein BMA10247_2099
gi|171855119|sp|A3NSE4|Y984_BURP0 RecName: Full=UPF0758 protein BURPS1106A_0984
gi|52429664|gb|AAU50257.1| DNA repair protein RadC [Burkholderia mallei ATCC 23344]
gi|76578547|gb|ABA48022.1| DNA repair protein RadC [Burkholderia pseudomallei 1710b]
gi|121227702|gb|ABM50220.1| DNA repair protein RadC [Burkholderia mallei SAVP1]
gi|124291499|gb|ABN00768.1| DNA repair protein RadC [Burkholderia mallei NCTC 10229]
gi|126228672|gb|ABN92212.1| DNA repair protein RadC [Burkholderia pseudomallei 1106a]
gi|126242243|gb|ABO05336.1| DNA repair protein RadC [Burkholderia mallei NCTC 10247]
gi|134247522|gb|EBA47607.1| DNA repair protein RadC [Burkholderia pseudomallei 305]
gi|147746743|gb|EDK53820.1| DNA repair protein RadC [Burkholderia mallei FMH]
gi|147751725|gb|EDK58792.1| DNA repair protein RadC [Burkholderia mallei JHU]
gi|148025271|gb|EDK83425.1| DNA repair protein RadC [Burkholderia mallei 2002721280]
gi|157938547|gb|EDO94217.1| DNA repair protein RadC [Burkholderia pseudomallei Pasteur 52237]
gi|160696540|gb|EDP86510.1| DNA repair protein RadC [Burkholderia mallei ATCC 10399]
gi|217397236|gb|EEC37252.1| DNA repair protein RadC [Burkholderia pseudomallei 576]
gi|225933496|gb|EEH29485.1| DNA repair protein RadC [Burkholderia pseudomallei Pakistan 9]
gi|238522151|gb|EEP85597.1| DNA repair protein RadC [Burkholderia mallei GB8 horse 4]
gi|242139422|gb|EES25824.1| DNA repair protein RadC [Burkholderia pseudomallei 1106b]
Length = 278
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A
Sbjct: 63 RDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDF 122
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + IG L V ++R L + + + + F
Sbjct: 123 KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCL 182
Query: 142 FSI 144
F
Sbjct: 183 FLD 185
>gi|206969519|ref|ZP_03230473.1| DNA repair protein RadC [Bacillus cereus AH1134]
gi|228941621|ref|ZP_04104168.1| DNA repair protein radC [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228954737|ref|ZP_04116759.1| DNA repair protein radC [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228974550|ref|ZP_04135116.1| DNA repair protein radC [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981145|ref|ZP_04141445.1| DNA repair protein radC [Bacillus thuringiensis Bt407]
gi|229071963|ref|ZP_04205173.1| DNA repair protein radC [Bacillus cereus F65185]
gi|229081719|ref|ZP_04214212.1| DNA repair protein radC [Bacillus cereus Rock4-2]
gi|229180730|ref|ZP_04308068.1| DNA repair protein radC [Bacillus cereus 172560W]
gi|229192665|ref|ZP_04319624.1| DNA repair protein radC [Bacillus cereus ATCC 10876]
gi|206735207|gb|EDZ52375.1| DNA repair protein RadC [Bacillus cereus AH1134]
gi|228590755|gb|EEK48615.1| DNA repair protein radC [Bacillus cereus ATCC 10876]
gi|228602708|gb|EEK60191.1| DNA repair protein radC [Bacillus cereus 172560W]
gi|228701564|gb|EEL54057.1| DNA repair protein radC [Bacillus cereus Rock4-2]
gi|228711122|gb|EEL63087.1| DNA repair protein radC [Bacillus cereus F65185]
gi|228778345|gb|EEM26612.1| DNA repair protein radC [Bacillus thuringiensis Bt407]
gi|228784953|gb|EEM32966.1| DNA repair protein radC [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228804935|gb|EEM51532.1| DNA repair protein radC [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228817833|gb|EEM63911.1| DNA repair protein radC [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|326942233|gb|AEA18129.1| DNA repair protein radC [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 225
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L +F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHQFDGLRMLKDATLEELI 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ IG A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGIGISKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCAKYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|222111947|ref|YP_002554211.1| DNA repair protein Radc [Acidovorax ebreus TPSY]
gi|254789648|sp|B9MEH2|Y2777_DIAST RecName: Full=UPF0758 protein Dtpsy_2777
gi|221731391|gb|ACM34211.1| DNA repair protein RadC [Acidovorax ebreus TPSY]
Length = 238
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 14/134 (10%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF--------------ATL 70
R++ L +G AL+ E+L ++L + K +A+ LL +
Sbjct: 12 PREKLLARGPAALSDAELLAILLRTGLAGKGVLQLAQELLDDPVRDPATGRSAGGGFGGI 71
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
G+ A LQ I +G EL V ++R + ++ Q ++ H
Sbjct: 72 AGLLHASSQDLQRIKGLGPAKRAELMAVLELARRAMAQQLREREVFDSPQAVQHYLQLHL 131
Query: 131 PMKNANNFAYCFSI 144
+ FA F
Sbjct: 132 AGRTHEVFAVLFLD 145
>gi|85859097|ref|YP_461299.1| DNA repair protein [Syntrophus aciditrophicus SB]
gi|85722188|gb|ABC77131.1| DNA repair protein [Syntrophus aciditrophicus SB]
Length = 308
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
L M+ P YIGH RL+ +F + G AL YE +EL+L IPRKD KS++
Sbjct: 71 LTTESMTPTPE-IPEPHYIGHRQRLKKKFFKCGLQALHDYEAVELLLSYAIPRKDIKSLS 129
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
K LL+RF +L G+ A L L + I A +++V S L+ K ++
Sbjct: 130 KDLLERFGSLKGIMDAELEELTAVRGISAHAAGLVRMVKEMSALYLQEKAREKPQISCTG 189
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
L + NF +
Sbjct: 190 ELLDFCKTALGGLKDENFCVLYLD 213
>gi|262371119|ref|ZP_06064441.1| DNA repair protein [Acinetobacter johnsonii SH046]
gi|262314005|gb|EEY95050.1| DNA repair protein [Acinetobacter johnsonii SH046]
Length = 235
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R+R LQ+G +L+ E+L + + + +A+ LL+ F +L VF A L
Sbjct: 8 WPEQERPRERLLQQGPASLSDAELLAIFIRSGSTQHSAVELARLLLQHFGSLNAVFDAEL 67
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANN 137
L + + IG +L V +R +K L L ++ + +N
Sbjct: 68 PELSQFHGIGPTKYSQLMAVKELGRRYSSQQLKQQKLELNHSAQLLKFLQYEFSGENQEV 127
Query: 138 FAYCFSI 144
FA
Sbjct: 128 FAVLCLD 134
>gi|311069296|ref|YP_003974219.1| DNA repair protein RadC [Bacillus atrophaeus 1942]
gi|310869813|gb|ADP33288.1| DNA repair protein RadC [Bacillus atrophaeus 1942]
Length = 231
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 45/125 (36%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
+ R+R LQ G LA E+L ++L ++ ++ LL F L + A +
Sbjct: 14 PEKEKPRERLLQYGAENLANNELLAILLRTGTKKESVMDLSNRLLHSFEGLRLLKEASVE 73
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L I+ IG A+++ RI K K + + V +F
Sbjct: 74 ELSGISGIGLVKAVQILAAMELGSRIHKLANEEKYVVRSPEDGANFVMEDMRFLTQEHFV 133
Query: 140 YCFSI 144
+
Sbjct: 134 CLYLN 138
>gi|325954476|ref|YP_004238136.1| DNA repair protein RadC [Weeksella virosa DSM 16922]
gi|323437094|gb|ADX67558.1| DNA repair protein RadC [Weeksella virosa DSM 16922]
Length = 233
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 1/140 (0%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M + + +R R++ L KG AL+ E+L +I+ + +A+ +LK
Sbjct: 1 MMNDEQEKKSIKSWAEDDRPREKLLLKGRAALSDAELLAIIMGSGNRDESAVQLAQRILK 60
Query: 66 -RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
+ + L IG+ A+ + +R + +T Q
Sbjct: 61 AAHNNWNELAKFGVKDLCSFKGIGEAKAISILTALEIGRRRNAQLHLERPKITCSQDAYQ 120
Query: 125 SVERHYPMKNANNFAYCFSI 144
++ F +
Sbjct: 121 LLQLQMADLPIEEFWVMYLN 140
>gi|159897836|ref|YP_001544083.1| DNA repair protein RadC [Herpetosiphon aurantiacus ATCC 23779]
gi|159890875|gb|ABX03955.1| DNA repair protein RadC [Herpetosiphon aurantiacus ATCC 23779]
Length = 231
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 46/122 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R G AL+ EIL ++L + + +A+ LL+ G+ + L
Sbjct: 15 EQPRERLRDFGPQALSDAEILAILLRVGVQGMNVIQLAQLLLREHGGWHGLQKIEFNDLC 74
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G+ A +K +R+L A + +T + ++ + +
Sbjct: 75 RVRGMGEAKAAHIKAALEIGRRLLLAAPNQPLQITSPADVVGLLQVEMSHLDKEHLRVVI 134
Query: 143 SI 144
Sbjct: 135 LN 136
>gi|20807378|ref|NP_622549.1| DNA repair proteins [Thermoanaerobacter tengcongensis MB4]
gi|25009024|sp|Q8RBC5|Y897_THETN RecName: Full=UPF0758 protein TTE0897
gi|20515897|gb|AAM24153.1| DNA repair proteins [Thermoanaerobacter tengcongensis MB4]
Length = 233
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 53/130 (40%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + + R R+R ++ G L+ E++ +I+ R++ S+A+ L+ L +
Sbjct: 8 RIKDLPYEERPRERLIKYGPQVLSNAELIAIIIGTGSRRENAISLAQKLITEERGLKFIV 67
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
+ + L I IG A++LK +R++ + +T + + + +
Sbjct: 68 NSSVEKLANIRGIGIAKAVKLKAAVELGRRLMLSTQGENFSVTSPEDVINLLMEEMRYLS 127
Query: 135 ANNFAYCFSI 144
+F
Sbjct: 128 KEHFKVVMLN 137
>gi|298529740|ref|ZP_07017143.1| DNA repair protein RadC [Desulfonatronospira thiodismutans ASO3-1]
gi|298511176|gb|EFI35079.1| DNA repair protein RadC [Desulfonatronospira thiodismutans ASO3-1]
Length = 238
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
Y GH RL+ R ++L YEILEL+L +PRKDTK +AKALL R+ T
Sbjct: 14 DSQKPHYTGHRQRLKKRL-DNDPSSLQDYEILELVLGYALPRKDTKPLAKALLNRYPTFK 72
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
+ A LQ I+ IG + +L R ++ S + L +
Sbjct: 73 DLLAARPGDLQAIDGIGPGIITFFRLWGEFWARTDRSGLSTRSTLDSPEKVARLARSRLQ 132
Query: 132 MKNANNFAYCFSIN 145
K+ F N
Sbjct: 133 FKSIEEFWAIMVDN 146
>gi|296331651|ref|ZP_06874120.1| DNA repair protein RadC [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305675390|ref|YP_003867062.1| putative DNA repair protein [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296151246|gb|EFG92126.1| DNA repair protein RadC [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413634|gb|ADM38753.1| putative DNA repair protein [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 231
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 44/123 (35%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L+ G LA +E+L ++L + ++ LL+ F L + A + L
Sbjct: 16 KEKPRERLLKVGAENLANHELLAILLRTGTKHESVMDLSNRLLRSFDGLRLLKEASVEEL 75
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG A+++ RI K + + V +F
Sbjct: 76 SSIRGIGMVKAVQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCL 135
Query: 142 FSI 144
+
Sbjct: 136 YLN 138
>gi|85374339|ref|YP_458401.1| hypothetical protein ELI_07560 [Erythrobacter litoralis HTCC2594]
gi|84787422|gb|ABC63604.1| hypothetical protein ELI_07560 [Erythrobacter litoralis HTCC2594]
Length = 236
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 11 SKDSHLDY-IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT 69
S + Y GH RLR+R L G ALA YE+LE +LF + DTK IAKAL+ RF +
Sbjct: 9 SAPKNAHYGTGHRARLRERLLNGGAEALADYEVLEYLLFAAFRQGDTKPIAKALIARFGS 68
Query: 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
L GV A L E+ +G+ A LK V++A++R+ + K L Q L +
Sbjct: 69 LAGVLNAEPGALAEVKGVGEASAAALKAVALAARRMARNEVQQKPILGSWQALLDYLTVD 128
Query: 130 YPMKNANNFAYCFSI 144
+
Sbjct: 129 MAHLTVERVRVLYLN 143
>gi|167814637|ref|ZP_02446317.1| DNA repair protein RadC [Burkholderia pseudomallei 91]
Length = 215
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A + +
Sbjct: 3 PRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDFKGL 62
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG L V ++R L + + + + F F
Sbjct: 63 RGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCLFLD 122
>gi|295397226|ref|ZP_06807325.1| DNA repair protein RadC [Aerococcus viridans ATCC 11563]
gi|294974535|gb|EFG50263.1| DNA repair protein RadC [Aerococcus viridans ATCC 11563]
Length = 241
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 49/132 (37%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
+ + + R R+R + G +L YE+L ++L + +A +++ F T
Sbjct: 16 KTTIHELPEEIRPRERLMTHGAESLTMYELLAIVLRTGNRSLNAIQLAMKIIQHFGTRYD 75
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
+ A H L ++ +G A+E++ +R+ ++N + +
Sbjct: 76 LRTASYHDLIQLPGVGPAKAVEIQAAIEFGRRLYQSNQEKLGVIMSTKDAGNYCIEKLKD 135
Query: 133 KNANNFAYCFSI 144
N +
Sbjct: 136 LQQENVMALYLN 147
>gi|229098927|ref|ZP_04229862.1| DNA repair protein radC [Bacillus cereus Rock3-29]
gi|228684425|gb|EEL38368.1| DNA repair protein radC [Bacillus cereus Rock3-29]
Length = 225
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGIGSLSNRELLAVLLRTGSKEETVLKLSDKILHHFDGLRMLKDATLEELI 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCAKYMMEELRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|148261604|ref|YP_001235731.1| DNA repair protein RadC [Acidiphilium cryptum JF-5]
gi|146403285|gb|ABQ31812.1| DNA repair protein RadC [Acidiphilium cryptum JF-5]
Length = 246
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Query: 7 SKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR 66
+ AP + GH R+R++ L +G ALA YE+LE++LF + DTK +AKAL+ R
Sbjct: 13 ADAPFSSTGPQ--GHRGRMREKLLGRGAEALADYELLEMLLFLAFKKGDTKPLAKALINR 70
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
F + V A L +G+ +KLV ++ R+ +A + L + + +
Sbjct: 71 FGSYAAVLAAEPDALFATPGLGQHSVAAIKLVQASAIRLARAELADAPVLNNWERLIDHL 130
Query: 127 ERHYPMKNANNFAYCFSIN 145
+ F + N
Sbjct: 131 TIAMAREPVEQFRVIYLDN 149
>gi|238789557|ref|ZP_04633341.1| DNA repair protein radC [Yersinia frederiksenii ATCC 33641]
gi|238722310|gb|EEQ13966.1| DNA repair protein radC [Yersinia frederiksenii ATCC 33641]
Length = 235
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G AL E+L + L IP +A+ L++ F +L + A L
Sbjct: 23 PREKLLKYGAAALTDAELLAIFLRTGIPGMHVMRMAEYLIEEFGSLHELLSADYATLSAK 82
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +++ ++ + R + + + ++ + F F
Sbjct: 83 KGIGVSKYSQIQAIAELAGRCFSTHLMRESVMLNPDITQKFLQNILSHREREIFLVMFLD 142
Query: 145 N 145
N
Sbjct: 143 N 143
>gi|218899622|ref|YP_002448033.1| DNA repair protein RadC [Bacillus cereus G9842]
gi|228902983|ref|ZP_04067123.1| DNA repair protein radC [Bacillus thuringiensis IBL 4222]
gi|228910289|ref|ZP_04074106.1| DNA repair protein radC [Bacillus thuringiensis IBL 200]
gi|226736616|sp|B7IIW5|Y662_BACC2 RecName: Full=UPF0758 protein BCG9842_B0662
gi|218542904|gb|ACK95298.1| DNA repair protein RadC [Bacillus cereus G9842]
gi|228849349|gb|EEM94186.1| DNA repair protein radC [Bacillus thuringiensis IBL 200]
gi|228856659|gb|EEN01179.1| DNA repair protein radC [Bacillus thuringiensis IBL 4222]
Length = 225
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L +F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHQFDGLRMLKDATLEELI 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ IG A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGIGISKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCAKYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|331670478|ref|ZP_08371317.1| DNA repair protein RadC [Escherichia coli TA271]
gi|331062540|gb|EGI34460.1| DNA repair protein RadC [Escherichia coli TA271]
Length = 146
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG +LK ++ ++R + L + ++ + F F
Sbjct: 72 HGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 131
>gi|167917922|ref|ZP_02505013.1| DNA repair protein RadC [Burkholderia pseudomallei BCC215]
Length = 214
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A + +
Sbjct: 2 PRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDFKGL 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG L V ++R L + + + + F F
Sbjct: 62 RGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCLFLD 121
>gi|307133081|ref|YP_003885097.1| protein associated with replication fork, putative DNA repair
protein [Dickeya dadantii 3937]
gi|306530610|gb|ADN00541.1| protein associated with replication fork, possible DNA repair
protein [Dickeya dadantii 3937]
Length = 232
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ + G AL+ E+L + L I +A++LL +F +L + A
Sbjct: 20 PREKLMALGAGALSDTELLAIFLRTGIAGTHVMQLAESLLMQFGSLYQLMMADKDTFCNA 79
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ V+ ++R+ ++ + + + + ++ F F
Sbjct: 80 RGVGVSKYTQLQAVAELARRLFSSHLAREDAMLNPEVTQQYLQLLLAHHEREVFLVMFLD 139
Query: 145 N 145
N
Sbjct: 140 N 140
>gi|229093550|ref|ZP_04224652.1| DNA repair protein radC [Bacillus cereus Rock3-42]
gi|228689880|gb|EEL43685.1| DNA repair protein radC [Bacillus cereus Rock3-42]
Length = 208
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGVAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|229019679|ref|ZP_04176486.1| DNA repair protein radC [Bacillus cereus AH1273]
gi|229025918|ref|ZP_04182310.1| DNA repair protein radC [Bacillus cereus AH1272]
gi|228735364|gb|EEL85967.1| DNA repair protein radC [Bacillus cereus AH1272]
gi|228741586|gb|EEL91779.1| DNA repair protein radC [Bacillus cereus AH1273]
Length = 225
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L +++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGTGSLSNRELLAVLLRTGSKEDTVLTLSDKILHHFDGLRMLKDATLEELI 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKASQLMAAFELGRRMVRLEYRNRYSIRSPEDCASYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|296283428|ref|ZP_06861426.1| hypothetical protein CbatJ_07394 [Citromicrobium bathyomarinum
JL354]
Length = 236
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 58/133 (43%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
GH RLR R L G ALA YE+LE +LF R DTK +AKALL RF +L
Sbjct: 11 AAQVPSAAGHRERLRKRLLSGGAEALADYEVLEYLLFAANRRGDTKPLAKALLARFGSLA 70
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
V A L + +G+ A LK V++A++R+ ++ + + + +
Sbjct: 71 RVLEAEPAALAKTPGMGEAGAAALKAVALAARRMARSEVVDRPVIANWHALIDYLSTDMA 130
Query: 132 MKNANNFAYCFSI 144
+
Sbjct: 131 HLTVERVRVLYLD 143
>gi|254258430|ref|ZP_04949484.1| 50S ribosomal protein L28 [Burkholderia pseudomallei 1710a]
gi|254217119|gb|EET06503.1| 50S ribosomal protein L28 [Burkholderia pseudomallei 1710a]
Length = 454
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R+R L +G AL+ E++ L+L +P D ++A LL RF +L + A
Sbjct: 63 RDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDF 122
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + IG L V ++R L + + + + F
Sbjct: 123 KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCL 182
Query: 142 FSI 144
F
Sbjct: 183 FLD 185
>gi|251791518|ref|YP_003006239.1| DNA repair protein RadC [Dickeya zeae Ech1591]
gi|247540139|gb|ACT08760.1| DNA repair protein RadC [Dickeya zeae Ech1591]
Length = 221
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ + G AL+ E+L + L + +A+ LL++F +L + A +
Sbjct: 9 PREKLMSLGVEALSDAELLAIFLRTGVEGIHVMELAQNLLQQFGSLYQLMTADWAAFNGV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ V+ ++R+ ++ + + + + ++ F F
Sbjct: 69 RGVGISKYTQLQAVAELARRLFSSHLAREDAMLNSEVTQQYLQLLLAHHEREVFLVMFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|229105092|ref|ZP_04235743.1| DNA repair protein radC [Bacillus cereus Rock3-28]
gi|228678273|gb|EEL32499.1| DNA repair protein radC [Bacillus cereus Rock3-28]
Length = 225
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGTGSLSNRELLAVLLRTGSKEETVLKLSDKILHHFDGLRMLKDATLEELI 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCAKYMMEELRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|227115112|ref|ZP_03828768.1| DNA repair protein RadC [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 221
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ ++ G +L E+L + L +P +A+ LL F +L + A
Sbjct: 9 PREKLVRLGAESLTDVELLAIFLRTGLPGVHVMQLAEDLLTHFGSLYQLMAADQSAFHHA 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +LK ++ S+R+ + + + + + ++ + F F
Sbjct: 69 RGVGISKYTQLKAIAELSRRLFFSRLAKEDAMLNPEATGQYLQLLLSRREREVFLVLFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|296136107|ref|YP_003643349.1| DNA repair protein RadC [Thiomonas intermedia K12]
gi|295796229|gb|ADG31019.1| DNA repair protein RadC [Thiomonas intermedia K12]
Length = 226
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 51/124 (41%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ L +G +ALA E++ ++L + + +A ALL +F L G+ A L
Sbjct: 11 DARPREKLLARGPHALADAELVAIVLRTGVRGQSALDLAAALLDQFGGLHGLLNASSEQL 70
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
++I +G E+ V ++R L + L + + FA
Sbjct: 71 RKIKGLGAAKYAEIAAVLELARRTLNEQMMQQPLLDSPAAVRDYLRLWLGPQPVEIFAVL 130
Query: 142 FSIN 145
F N
Sbjct: 131 FLDN 134
>gi|110833075|ref|YP_691934.1| DNA repair protein RadC-like protein [Alcanivorax borkumensis SK2]
gi|123050781|sp|Q0VT58|Y214_ALCBS RecName: Full=UPF0758 protein ABO_0214
gi|110646186|emb|CAL15662.1| DNA repair protein RadC homolog [Alcanivorax borkumensis SK2]
Length = 224
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 35/127 (27%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R++ L +G AL+ E+L + L +A+ L L +
Sbjct: 6 WPEDERPREKLLARGAQALSDAELLAIFLRTGQQGLTAVDLARRQLVSSGGLRAMLDLSP 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+ + +G L +R L L + F
Sbjct: 66 ERMAHLPGMGVARRALLLAALELGRRYLAEPLERGLPLDNPDKAGQLLTAQLRGLPFEVF 125
Query: 139 AYCFSIN 145
A F N
Sbjct: 126 ACLFLDN 132
>gi|292486566|ref|YP_003529434.1| glutaredoxin 3 [Erwinia amylovora CFBP1430]
gi|292897804|ref|YP_003537173.1| DNA repair protein [Erwinia amylovora ATCC 49946]
gi|291197652|emb|CBJ44747.1| DNA repair protein [Erwinia amylovora ATCC 49946]
gi|291551981|emb|CBA19018.1| Glutaredoxin 3 [Erwinia amylovora CFBP1430]
gi|312170627|emb|CBX78890.1| Glutaredoxin 3 [Erwinia amylovora ATCC BAA-2158]
Length = 223
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G ++L+ E+L + L + ++A+ LLK F +L + AP Q I
Sbjct: 10 PREKLLKCGASSLSDKELLAIFLRTGVRGVHVMTLAQQLLKEFGSLHRLMNAPHDRFQAI 69
Query: 85 NRIGKRVALELKLVSVASQRIL-KANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+G +L V+ ++R + ++ + L + + F F
Sbjct: 70 CGVGMAKYAQLNAVAELARRCFSCQEALEDQVVSSVEQMLDFLNGSLAHREREIFQVIFF 129
Query: 144 IN 145
N
Sbjct: 130 DN 131
>gi|261210491|ref|ZP_05924785.1| DNA repair protein RadC [Vibrio sp. RC341]
gi|260840549|gb|EEX67115.1| DNA repair protein RadC [Vibrio sp. RC341]
Length = 224
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G AL+ E+L + L + ++A LL+ F +L +F A
Sbjct: 12 PREKLLQRGSQALSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASQQEFCRH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT Q + + + F F
Sbjct: 72 KGLGEAKYVQLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|229158072|ref|ZP_04286142.1| DNA repair protein radC [Bacillus cereus ATCC 4342]
gi|228625391|gb|EEK82148.1| DNA repair protein radC [Bacillus cereus ATCC 4342]
Length = 181
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELV 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +G A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGVGIAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCARYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|289524079|ref|ZP_06440933.1| DNA repair protein RadC [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289502735|gb|EFD23899.1| DNA repair protein RadC [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 309
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 4/145 (2%)
Query: 4 FRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
RM + R R+ +Q G L ++L +IL + +A+ L
Sbjct: 68 KRMVAERKSTRSIKEWVKEERPREMLVQLGAENLPLAKLLAIILRTGKDGMSAEELARTL 127
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
L RF +L G+ AP+ + +I+ IG A+++K +R K KK L +
Sbjct: 128 LNRFGSLRGIDSAPISEISKIDGIGLAKAVQIKAALELGKRFFKEKAETKKKLNKPDDVI 187
Query: 124 ----ISVERHYPMKNANNFAYCFSI 144
+ K F+
Sbjct: 188 GYVSEYYAPYLRDKQKEVFSVILLD 212
>gi|167036321|ref|YP_001671552.1| DNA repair protein RadC [Pseudomonas putida GB-1]
gi|189029399|sp|B0KQ87|Y5335_PSEPG RecName: Full=UPF0758 protein PputGB1_5335
gi|166862809|gb|ABZ01217.1| DNA repair protein RadC [Pseudomonas putida GB-1]
Length = 226
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ LQ+G L E+L ++L + ++ +A+ LL RF L A +
Sbjct: 10 ERPREKLLQRGAVVLTDAELLAVLLGSGVAGRNVLDLARGLLVRFGGLRQFLEAEREAVL 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
IG +L+ + +R L N L ++ + + F F
Sbjct: 70 REPGIGMVKYAQLQALLEIGRRYLDENIKRAAALDGPAAVRRYLKAMLRHEVSEVFGCLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|15640247|ref|NP_229874.1| DNA repair protein RadC [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|147674401|ref|YP_001218476.1| DNA repair protein RadC [Vibrio cholerae O395]
gi|153820026|ref|ZP_01972693.1| DNA repair protein RadC [Vibrio cholerae NCTC 8457]
gi|227080437|ref|YP_002808988.1| DNA repair protein RadC [Vibrio cholerae M66-2]
gi|229506982|ref|ZP_04396490.1| DNA repair protein RadC [Vibrio cholerae BX 330286]
gi|229509352|ref|ZP_04398835.1| DNA repair protein RadC [Vibrio cholerae B33]
gi|229516299|ref|ZP_04405747.1| DNA repair protein RadC [Vibrio cholerae RC9]
gi|229606490|ref|YP_002877138.1| DNA repair protein RadC [Vibrio cholerae MJ-1236]
gi|254851346|ref|ZP_05240696.1| DNA repair protein RadC [Vibrio cholerae MO10]
gi|255744029|ref|ZP_05417983.1| DNA repair protein RadC [Vibrio cholera CIRS 101]
gi|298500859|ref|ZP_07010661.1| DNA repair protein RadC [Vibrio cholerae MAK 757]
gi|13431812|sp|Q9KVC9|Y217_VIBCH RecName: Full=UPF0758 protein VC_0217
gi|172047481|sp|A5F402|Y3797_VIBC3 RecName: Full=UPF0758 protein VC0395_A2597/VC395_0249
gi|254789668|sp|C3LQH9|Y205_VIBCM RecName: Full=UPF0758 protein VCM66_0205
gi|9654624|gb|AAF93393.1| DNA repair protein RadC [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|126509430|gb|EAZ72024.1| DNA repair protein RadC [Vibrio cholerae NCTC 8457]
gi|146316284|gb|ABQ20823.1| DNA repair protein RadC [Vibrio cholerae O395]
gi|227008325|gb|ACP04537.1| DNA repair protein RadC [Vibrio cholerae M66-2]
gi|227012064|gb|ACP08274.1| DNA repair protein RadC [Vibrio cholerae O395]
gi|229346725|gb|EEO11695.1| DNA repair protein RadC [Vibrio cholerae RC9]
gi|229353667|gb|EEO18604.1| DNA repair protein RadC [Vibrio cholerae B33]
gi|229356087|gb|EEO21006.1| DNA repair protein RadC [Vibrio cholerae BX 330286]
gi|229369145|gb|ACQ59568.1| DNA repair protein RadC [Vibrio cholerae MJ-1236]
gi|254847051|gb|EET25465.1| DNA repair protein RadC [Vibrio cholerae MO10]
gi|255738294|gb|EET93685.1| DNA repair protein RadC [Vibrio cholera CIRS 101]
gi|297540363|gb|EFH76422.1| DNA repair protein RadC [Vibrio cholerae MAK 757]
Length = 224
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G +L+ E+L + L + ++A LL+ F +L +F A
Sbjct: 12 PREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT Q + + + F F
Sbjct: 72 KGLGEAKFVQLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|187925122|ref|YP_001896764.1| DNA repair protein RadC [Burkholderia phytofirmans PsJN]
gi|238689615|sp|B2T6H6|Y3148_BURPP RecName: Full=UPF0758 protein Bphyt_3148
gi|187716316|gb|ACD17540.1| DNA repair protein RadC [Burkholderia phytofirmans PsJN]
Length = 259
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 1/136 (0%)
Query: 9 APSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA 68
APS ++ + R+R L++G L+ E++ LIL +P D S+A+ LL RF
Sbjct: 32 APSPLLRGKWL-KDDMPRERLLRQGPGVLSDTEMIVLILGSGLPGHDVFSVARELLDRFG 90
Query: 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
+L + A + IG +L + ++R L + L + +
Sbjct: 91 SLRAMLDATYTDFDGLRGIGPAKKAQLLAIMEMARRSLVDKLRSRSLLNSPEAVENYLRL 150
Query: 129 HYPMKNANNFAYCFSI 144
+ F F
Sbjct: 151 RIGGRPLEVFVSLFLD 166
>gi|300088789|ref|YP_003759311.1| DNA repair protein RadC [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299528522|gb|ADJ26990.1| DNA repair protein RadC [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 263
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+ + MS+ P K+ GH +RLR+RF + G N YEI+EL+L P++D K A
Sbjct: 11 INNPFMSEKP-KNQPDSATGHRSRLRERFNKGGLNGFHDYEIVELLLTLSTPQRDCKPSA 69
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTP-- 118
KA L RF +L GV AP+ L ++ IG + ++LV+ ++ +L+ ++F
Sbjct: 70 KAALARFKSLRGVLEAPVEELTQVPGIGPVNSTAIRLVAEVARELLRERAEQQEFPDSCA 129
Query: 119 -GQPCLISVERHYPMKNANNFAYCFSI 144
Q + F +
Sbjct: 130 TPQVVYDYLYSSMSGLRKEVFKVLYLN 156
>gi|170766630|ref|ZP_02901083.1| DNA repair protein RadC [Escherichia albertii TW07627]
gi|170124068|gb|EDS92999.1| DNA repair protein RadC [Escherichia albertii TW07627]
Length = 250
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 48/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G ++L E+L L L KD +++K +L+ F +L G+ + +
Sbjct: 10 PREKMLRLGISSLTDVELLALFLRTGTRGKDVLTLSKEMLENFGSLYGLLSSEYEQFSGV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +LK ++ ++R + L + ++ + F F
Sbjct: 70 YGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 129
>gi|332040187|gb|EGI76568.1| hypothetical protein HGR_10625 [Hylemonella gracilis ATCC 19624]
Length = 223
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 50/121 (41%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ L +G AL+ E+L L+L I K +A+ LL F + G+ + LQ
Sbjct: 10 RPREKLLARGPGALSDAELLALLLRTGIAGKGVLQLAQDLLDGFDGIAGLLQSGGEALQR 69
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G EL+ V ++R L + L + ++ H K FA
Sbjct: 70 VKGLGPAKRAELQAVLELARRALAQQLRARSTLDTPEAVKHYLQLHLAAKPHECFAVLML 129
Query: 144 I 144
Sbjct: 130 D 130
>gi|296100494|ref|YP_003610640.1| DNA repair protein RadC [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295054953|gb|ADF59691.1| DNA repair protein RadC [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 222
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G L E+L L L P K ++AK L+ F +L G+ A L +
Sbjct: 10 PREKLLRYGVTLLKDEELLALFLRTGTPGKTVFTLAKDLIGHFGSLYGLMTAELAEFAHV 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +LK ++ ++R + + ++ F F
Sbjct: 70 EGIGVAKYAQLKGIAELARRFQCVRMQEEDPILTPAMTREFLQSQLTDIEREIFMVIFLD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|261823583|ref|YP_003261689.1| DNA repair protein RadC [Pectobacterium wasabiae WPP163]
gi|261607596|gb|ACX90082.1| DNA repair protein RadC [Pectobacterium wasabiae WPP163]
Length = 221
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ ++ G +L E+L + L +P +A+ LL +F +L + A
Sbjct: 9 PREKLVRLGAESLTDAELLAIFLRTGLPGVHVMQLAEGLLAQFGSLYQLMMADQSAFHSA 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +LK ++ S+R+ + + + + + ++ + F F
Sbjct: 69 RGVGISKYTQLKAIAELSRRLFFSRLAKEDAMLNPEATGQYLQLLLSRREREVFLVLFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|298481711|ref|ZP_06999902.1| DNA repair protein RadC [Bacteroides sp. D22]
gi|298272252|gb|EFI13822.1| DNA repair protein RadC [Bacteroides sp. D22]
Length = 231
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 39/127 (30%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAP 77
+R R++ ++KG AL+ E+L +++ + + + LL +
Sbjct: 12 WAPEDRPREKMMEKGAAALSDAELLAILIGSGNTEESAVELMRRLLLSCDNNLNSLAKWE 71
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ +G ++ + +R N + +T + +
Sbjct: 72 VCDYSRFKGMGPAKSITVMAALELGKRRKLQNTKERPQITCSKDIYDIFQPLMCDLEQEE 131
Query: 138 FAYCFSI 144
F
Sbjct: 132 FWVLLLN 138
>gi|311104975|ref|YP_003977828.1| DNA repair protein RadC 2 [Achromobacter xylosoxidans A8]
gi|310759664|gb|ADP15113.1| DNA repair protein RadC 2 [Achromobacter xylosoxidans A8]
Length = 225
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 50/129 (38%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
D + H R R+R L+ G +L E+L + L IP D + LL RF L G+ GA
Sbjct: 5 DRLPKHERPRERLLRHGAGSLQDSELLAIALRTGIPGLDVVQLGSQLLARFGGLRGLLGA 64
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L + +G A L + ++R ++ + + L + +
Sbjct: 65 TPEELTAVPGLGAAKACMLVALLELARRAIEEDLTRNSNLAHPLQVKEYCKMALGHRQVE 124
Query: 137 NFAYCFSIN 145
+ + N
Sbjct: 125 HCIALYLDN 133
>gi|259906759|ref|YP_002647115.1| DNA repair protein RadC [Erwinia pyrifoliae Ep1/96]
gi|224962381|emb|CAX53836.1| DNA repair protein RadC [Erwinia pyrifoliae Ep1/96]
gi|283476545|emb|CAY72373.1| Glutaredoxin 3 [Erwinia pyrifoliae DSM 12163]
Length = 223
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G ++L+ E+L + L + ++A+ LL+ F +L + AP + I
Sbjct: 10 PREKLLKCGASSLSDTELLAIFLRTGVRGVHVMTLAQQLLREFGSLHRLMNAPHDRFEAI 69
Query: 85 NRIGKRVALELKLVSVASQRIL-KANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G +L V+ ++R + ++ + L + + F F
Sbjct: 70 HGVGMAKYAQLNAVAELARRCFSCQEALENQVVSSVEQMLDFLNGSLAHREREIFQVIFF 129
Query: 144 IN 145
N
Sbjct: 130 DN 131
>gi|50119106|ref|YP_048273.1| DNA repair protein RadC [Pectobacterium atrosepticum SCRI1043]
gi|73913734|sp|Q6DAV7|Y145_ERWCT RecName: Full=UPF0758 protein ECA0145
gi|49609632|emb|CAG73065.1| DNA repair protein [Pectobacterium atrosepticum SCRI1043]
Length = 221
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ ++ G +L E+L + L +P +A+ LL +F +L + A
Sbjct: 9 PREKLVRLGAESLTDAELLAIFLRTGLPGVHVMQLAENLLAQFGSLYQLMTAEQSAFHNA 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G ++K ++ S+R+ + + + + + ++ + F F
Sbjct: 69 RGVGISKYTQIKAIAELSRRLFFSRLAKEDAMLNPEATGQYLQLLLSRREREVFLVLFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|226311419|ref|YP_002771313.1| DNA repair protein RadC [Brevibacillus brevis NBRC 100599]
gi|226094367|dbj|BAH42809.1| probable DNA repair protein RadC [Brevibacillus brevis NBRC 100599]
Length = 232
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 56/139 (40%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M+ L + +++R R+R L++G L+ E+L ++L ++ +A+ LL
Sbjct: 1 MATNTCNKMLLKNVPYYDRPRERLLREGAVHLSDTELLAILLRTGREQETAHQLAQRLLA 60
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF L G+ A L E+ IG A+EL +R++ + + +
Sbjct: 61 RFGDLRGLAQASHAELTELKGIGPVKAIELHAAFELGRRLMGVPREYRASIRLPRDVADL 120
Query: 126 VERHYPMKNANNFAYCFSI 144
+ +F F
Sbjct: 121 MSPELAHLTQEHFVCLFLN 139
>gi|120612416|ref|YP_972094.1| DNA repair protein RadC [Acidovorax citrulli AAC00-1]
gi|171769198|sp|A1TTN2|Y3773_ACIAC RecName: Full=UPF0758 protein Aave_3773
gi|120590880|gb|ABM34320.1| DNA replication and repair protein RadC [Acidovorax citrulli
AAC00-1]
Length = 237
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 13/135 (9%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-------------RFAT 69
R R+R L +G ++L+ E+L ++L I K +A+ LL F
Sbjct: 10 ARPRERLLARGPSSLSDTELLAILLRTGIVGKGVMQMAQELLSPALPDPATGALRGGFGG 69
Query: 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
+GG+ A L+ I +G L V ++R+L + + ++ H
Sbjct: 70 IGGLLQADADALKRIKGLGPAKRTSLVAVLELARRMLAQTLPKRDLFHSPRAVRDYLQLH 129
Query: 130 YPMKNANNFAYCFSI 144
K F+ F
Sbjct: 130 LGGKPHEVFSVLFLD 144
>gi|152972484|ref|YP_001337630.1| DNA repair protein RadC [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|238897079|ref|YP_002921825.1| DNA repair protein RadC [Klebsiella pneumoniae NTUH-K2044]
gi|329996935|ref|ZP_08302632.1| DNA repair protein RadC [Klebsiella sp. MS 92-3]
gi|166218784|sp|A6TFM9|Y3939_KLEP7 RecName: Full=UPF0758 protein KPN78578_39390
gi|150957333|gb|ABR79363.1| DNA repair protein RadC [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|238549407|dbj|BAH65758.1| DNA repair protein [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|328539225|gb|EGF65254.1| DNA repair protein RadC [Klebsiella sp. MS 92-3]
Length = 221
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 50/121 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ G L E+L L L R+D S A+ALL+RF +L + A L +
Sbjct: 9 PREKMLQYGIETLTDVELLALFLRVGTRRQDVLSYAQALLQRFGSLYALLSADKAQLIAV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +G +LK ++ ++R + + L ++ + F F
Sbjct: 69 DGLGLAKYAQLKGIAELARRYFSSQLVEEAALVTPSMTREFLQSQLTEEEREIFMVIFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|325287028|ref|YP_004262818.1| DNA repair protein RadC [Cellulophaga lytica DSM 7489]
gi|324322482|gb|ADY29947.1| DNA repair protein RadC [Cellulophaga lytica DSM 7489]
Length = 232
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 52/141 (36%), Gaps = 2/141 (1%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M P + + + ++ R++ QKG++ L+ E++ +++ + ++K +L
Sbjct: 1 MQNQP-QSFSIKNWSNDDKPREKLSQKGKSVLSDAELIAILIGSGSRNESAVELSKRILG 59
Query: 66 R-FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
L + ++ L + IG+ A+ + +R + + + +
Sbjct: 60 SVNNNLNDLGKLSINQLMQFKGIGEAKAITITAALEIGRRRREEGEKKVEKIGSSKDVFN 119
Query: 125 SVERHYPMKNANNFAYCFSIN 145
++ F + N
Sbjct: 120 LLQPVLGELPHEEFWIIYLNN 140
>gi|262172690|ref|ZP_06040368.1| DNA repair protein RadC [Vibrio mimicus MB-451]
gi|261893766|gb|EEY39752.1| DNA repair protein RadC [Vibrio mimicus MB-451]
Length = 224
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G +L+ E+L + L + ++A LL+ F +L +F A
Sbjct: 12 PREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT Q + + + F F
Sbjct: 72 KGLGEAKFVQLQAVLEMTQRYLGETLKRGDALTSPQQTKLYLSSILRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|150025420|ref|YP_001296246.1| DNA repair protein RadC [Flavobacterium psychrophilum JIP02/86]
gi|149771961|emb|CAL43435.1| DNA repair protein RadC [Flavobacterium psychrophilum JIP02/86]
Length = 231
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 47/136 (34%), Gaps = 1/136 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FAT 69
+ + Y ++ R++ + KG+ L+ E++ +++ + +++ +L
Sbjct: 4 NNSFSIKYWSEDDKPREKLMLKGKQVLSDAELVAILIGSGSRAESAVQLSQRILASVDNN 63
Query: 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
L + + L IG+ A+ + + +R +T + ++
Sbjct: 64 LNALGKLSIKQLTNFKGIGEAKAISIVAATELGRRRRTEETVELAKITSSKAVFEIMQPI 123
Query: 130 YPMKNANNFAYCFSIN 145
F F N
Sbjct: 124 IGELVHEEFWVLFLNN 139
>gi|301631360|ref|XP_002944759.1| PREDICTED: UPF0758 protein Veis_1654-like [Xenopus (Silurana)
tropicalis]
Length = 225
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G ALA E+L ++L + +A+ LL F + G+ + L+
Sbjct: 12 PREKLLARGPGALADAELLAIVLRTGTAGRGVLQMAQELLVHFGGIAGLLHTDVQALRHF 71
Query: 85 NRI-GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ G EL V ++R L ++ L ++ H + FA F
Sbjct: 72 KGLGGNAKRAELAAVLELARRALAQQLREREVFDSPDTMLHYLQLHLAARGHEVFAVLFL 131
Query: 144 I 144
Sbjct: 132 D 132
>gi|75759952|ref|ZP_00740021.1| DNA repair protein radC [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74492549|gb|EAO55696.1| DNA repair protein radC [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 205
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L +F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHQFDGLRMLKDATLEELI 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ IG A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGIGISKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCAKYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|297583749|ref|YP_003699529.1| DNA repair protein RadC [Bacillus selenitireducens MLS10]
gi|297142206|gb|ADH98963.1| DNA repair protein RadC [Bacillus selenitireducens MLS10]
Length = 228
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 47/121 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L +G A +++ ++L ++ ++ ++ F + + A + L
Sbjct: 14 ERPRERMLFEGPEACTNQDLIAILLGSGTKKESVLDLSNRVISHFNGIRLLEEATIQELT 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG+ A++L+ +RI +K + + V +F F
Sbjct: 74 ALSGIGEAKAVQLRAAIELGKRIRSYPKEMKYVIRSPKDASDFVMEDMRTLTQEHFVCLF 133
Query: 143 S 143
Sbjct: 134 L 134
>gi|322515256|ref|ZP_08068254.1| DNA repair protein RadC [Actinobacillus ureae ATCC 25976]
gi|322118761|gb|EFX90967.1| DNA repair protein RadC [Actinobacillus ureae ATCC 25976]
Length = 224
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 53/121 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L E+L + L I +++ +LK+F +L G+ A ++ ++
Sbjct: 8 PREKLLAYGAGSLTDQELLAIFLRTGIKGLPVMQLSETVLKQFGSLRGLLSADVNAFCQM 67
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ ++R L +++ +T ++ + + F F
Sbjct: 68 KGLGQTQFIQLQASKEMTKRYLAQQMQVRENITEPYLAVMCFQAELEAEEREIFMVMFLD 127
Query: 145 N 145
N
Sbjct: 128 N 128
>gi|166713831|ref|ZP_02245038.1| DNA repair protein RadC [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 225
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 47/123 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L++G AL+ E+L + + + +D A+ LL R L + P L
Sbjct: 10 ERPREKLLERGATALSDAELLAIFVGSGLRGQDAVQTARDLLHRHGPLRPLLDRPAKALA 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G A +L + R L + + L+ + + FA F
Sbjct: 70 RLPGLGPASACKLAAALELAHRHLMSALERGEALSDPPSVGRYFSQRLRARAYEVFAVLF 129
Query: 143 SIN 145
N
Sbjct: 130 MDN 132
>gi|110637898|ref|YP_678105.1| DNA repair protein [Cytophaga hutchinsonii ATCC 33406]
gi|110280579|gb|ABG58765.1| DNA replication and repair protein RadC [Cytophaga hutchinsonii
ATCC 33406]
Length = 233
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 3/132 (2%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAP 77
R R++ L KG AL+ E++ ++L +AK +L+ +L +
Sbjct: 14 WTEEERPREKLLSKGIAALSDAELIAILLGSGTVNLRAVDLAKHILQDNNQSLYTLGRLS 73
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ LQ+ IGK A+ L +R N IK + + ++
Sbjct: 74 VRDLQKTKGIGKAKAIILVSAFELGRRRKNTNVEIKPQVKSSEDVYNYIQADLADLMHEE 133
Query: 138 FAYCFS--INII 147
F N I
Sbjct: 134 FWILLLNCDNRI 145
>gi|307294409|ref|ZP_07574253.1| DNA repair protein RadC [Sphingobium chlorophenolicum L-1]
gi|306880560|gb|EFN11777.1| DNA repair protein RadC [Sphingobium chlorophenolicum L-1]
Length = 245
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 2/140 (1%)
Query: 7 SKAPSKDSHLDY--IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
P KD + +GH RLR + G +AL +E++E +L IPR+DTK +AKALL
Sbjct: 13 KTLPEKDLKAAHDGVGHRARLRRKLADSGGDALHDHELIEYLLALAIPRRDTKPLAKALL 72
Query: 65 KRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
+ F +GG+ A + + +G +K+V R L+ + K L Q L
Sbjct: 73 REFDGIGGLMAADWQAIARVPGMGDTSIAAIKIVQATMLRTLRNEVAEKPVLASWQALLD 132
Query: 125 SVERHYPMKNANNFAYCFSI 144
+
Sbjct: 133 YLRADMAFLTVERVRVLHLN 152
>gi|302037875|ref|YP_003798197.1| DNA repair protein RadC-like protein [Candidatus Nitrospira
defluvii]
gi|300605939|emb|CBK42272.1| DNA repair protein RadC homolog [Candidatus Nitrospira defluvii]
Length = 238
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 41/126 (32%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R+R L++G +L+ ++L ++L + +L R + G+
Sbjct: 13 WPETERPRERLLREGAESLSDAQLLAILLRVGRQEASAVKVGMEVLDRVGGISGLLHCSA 72
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L I +G A +LK +R + A + ++ F
Sbjct: 73 EELCTIPGVGPAKAAQLKAAVEVGKRAVSAPLTTGMRISSSADLFKHYHARLRDLRHEIF 132
Query: 139 AYCFSI 144
A
Sbjct: 133 AVVLLD 138
>gi|206890013|ref|YP_002248228.1| DNA repair protein [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741951|gb|ACI21008.1| DNA repair protein [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 224
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 1/126 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
R R+R ++ G AL+ ++L ++L K A LL+ F L G+ A +
Sbjct: 7 WPETERPRERLIKHGAEALSDAQLLAIVLRTGSNGKTVIDTAIELLQNFRGLRGLEEASI 66
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L+ +G ++K +R L + + F
Sbjct: 67 SELKSFKGLGIAKIAQIKASFELGKRALCEKSQEQF-FNSAEIVYNYFFPKLNGLKKEVF 125
Query: 139 AYCFSI 144
Sbjct: 126 ITLLLD 131
>gi|121591820|ref|ZP_01679006.1| DNA repair protein RadC [Vibrio cholerae 2740-80]
gi|121546316|gb|EAX56595.1| DNA repair protein RadC [Vibrio cholerae 2740-80]
Length = 169
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G +L+ E+L + L + ++A LL+ F +L +F A
Sbjct: 12 PREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT Q + + + F F
Sbjct: 72 KGLGEAKFVQLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|311277441|ref|YP_003939672.1| DNA repair protein RadC [Enterobacter cloacae SCF1]
gi|308746636|gb|ADO46388.1| DNA repair protein RadC [Enterobacter cloacae SCF1]
Length = 221
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ + G +L E+L L L +D S A LL RF +L + AP L +
Sbjct: 9 PREKMQRDGIESLTDAELLALFLRIGTRHRDVMSYACDLLHRFGSLYSLLSAPEKELMRV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +LK ++ ++R +++ L ++ + F F
Sbjct: 69 EGIGIAKYAQLKGIAELARRFFSVRVIVERSLDSSDATREFLQSQLAQEEREIFMVIFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|258620577|ref|ZP_05715614.1| DNA repair protein RadC [Vibrio mimicus VM573]
gi|258625887|ref|ZP_05720762.1| DNA repair protein RadC [Vibrio mimicus VM603]
gi|258581851|gb|EEW06725.1| DNA repair protein RadC [Vibrio mimicus VM603]
gi|258587092|gb|EEW11804.1| DNA repair protein RadC [Vibrio mimicus VM573]
Length = 224
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G +L+ E+L + L + ++A LL+ F +L +F A
Sbjct: 12 PREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT Q + + + F F
Sbjct: 72 KGLGEAKFVQLQAVLEMTQRYLGETLKRGDALTSPQQTKLYLSSILRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|120437195|ref|YP_862881.1| DNA repair protein RadC [Gramella forsetii KT0803]
gi|117579345|emb|CAL67814.1| DNA repair protein RadC [Gramella forsetii KT0803]
Length = 232
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 1/130 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGVFG 75
+R R++ LQKG+ +L+ E++ +++ + ++K +L L +
Sbjct: 11 KNWAADDRPREKLLQKGKLSLSDSELIAILIGSGSKNETAVELSKRILSSTKNNLSELGK 70
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L + IG A+ + +R +K +T ++
Sbjct: 71 LSVSQLCKFKGIGPAKAVSIVAALELGRRRRLEEALEQKKITSSNSVFEIMQPVIGELPH 130
Query: 136 NNFAYCFSIN 145
F + N
Sbjct: 131 EEFWIIYLNN 140
>gi|24375732|ref|NP_719775.1| DNA repair protein RadC [Shewanella oneidensis MR-1]
gi|38372485|sp|Q8E9M2|Y4248_SHEON RecName: Full=UPF0758 protein SO_4248
gi|24350669|gb|AAN57219.1|AE015857_12 DNA repair protein RadC [Shewanella oneidensis MR-1]
Length = 225
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 53/120 (44%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
RD+ L KG + L+ E+L ++L + + +A++L++ F L + AP H + +
Sbjct: 12 PRDKLLLKGASHLSDAELLAVLLRNGLSGLNAVDLARSLIQEFGGLRSLLCAPKHQVCRL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ + ++R+ + N + LT + R ++ FA
Sbjct: 72 PGVGPVKYAQLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLADRSYEVFAILLLD 131
>gi|160914215|ref|ZP_02076436.1| hypothetical protein EUBDOL_00225 [Eubacterium dolichum DSM 3991]
gi|158433842|gb|EDP12131.1| hypothetical protein EUBDOL_00225 [Eubacterium dolichum DSM 3991]
Length = 227
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 54/123 (43%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L G AL+ E++ L+L + +A +L R+++LG + A L L
Sbjct: 9 HQRPREKALMHGIEALSNRELIALLLRNGTRSQSVLELADEVLNRYSSLGSLGQASLTEL 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
EI+ I + A+EL+ +RI + ++ Q + + + +F
Sbjct: 69 MEIDGIKQAKAIELQAAFALGKRIAFDVLKESEAISSPQKLSEWLMQQIGFQQQEHFLVV 128
Query: 142 FSI 144
F
Sbjct: 129 FLN 131
>gi|157149255|ref|YP_001456574.1| DNA repair protein RadC [Citrobacter koseri ATCC BAA-895]
gi|166218775|sp|A8ARM5|Y5095_CITK8 RecName: Full=UPF0758 protein CKO_05095
gi|157086460|gb|ABV16138.1| hypothetical protein CKO_05095 [Citrobacter koseri ATCC BAA-895]
Length = 220
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 1/125 (0%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
R++ L+ G +L E+L L L +P KD ++A L+R +L G+ A
Sbjct: 4 PERLMPREKMLKSGIGSLTDVELLALFLRTGVPGKDVMALAHETLQRSGSLYGLLSADFA 63
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
+ IG +LK ++ ++R KA + L + ++ + F
Sbjct: 64 QFRGT-GIGIAKYAQLKGIAELARRYYKARMMKENALLSPEMTREFLQSQLTGEEREIFL 122
Query: 140 YCFSI 144
F
Sbjct: 123 VIFLD 127
>gi|28198053|ref|NP_778367.1| DNA repair protein RadC [Xylella fastidiosa Temecula1]
gi|32129952|sp|Q87F21|Y117_XYLFT RecName: Full=UPF0758 protein PD_0117
gi|28056113|gb|AAO28016.1| DNA repair protein [Xylella fastidiosa Temecula1]
gi|307579143|gb|ADN63112.1| DNA repair protein RadC [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 224
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 40/124 (32%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L G L+ E+L + L + D A+ LL L + P L
Sbjct: 9 HERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDL 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +G A +L S R L A + + FA
Sbjct: 69 MRLPGLGLARACKLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVL 128
Query: 142 FSIN 145
F N
Sbjct: 129 FLDN 132
>gi|237715339|ref|ZP_04545820.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|237719692|ref|ZP_04550173.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|262405180|ref|ZP_06081730.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294645172|ref|ZP_06722895.1| DNA repair protein RadC [Bacteroides ovatus SD CC 2a]
gi|294807027|ref|ZP_06765846.1| DNA repair protein RadC [Bacteroides xylanisolvens SD CC 1b]
gi|229444648|gb|EEO50439.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|229450961|gb|EEO56752.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|262356055|gb|EEZ05145.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292639503|gb|EFF57798.1| DNA repair protein RadC [Bacteroides ovatus SD CC 2a]
gi|294445726|gb|EFG14374.1| DNA repair protein RadC [Bacteroides xylanisolvens SD CC 1b]
gi|295086480|emb|CBK68003.1| DNA repair protein radc [Bacteroides xylanisolvens XB1A]
Length = 231
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 39/123 (31%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAPLHLL 81
+R R++ ++KG AL+ E+L +++ + + + LL + +
Sbjct: 16 DRPREKMMEKGAAALSDAELLAILIGSGNTEESAVELMRRLLLSCDNNLNSLAKWEVCDY 75
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G ++ + +R N + +T + + F
Sbjct: 76 SRFKGMGPAKSITVMAALELGKRRKLQNTKERPQITCSKDIYDIFQPLMCDLEQEEFWVL 135
Query: 142 FSI 144
Sbjct: 136 LLN 138
>gi|226940826|ref|YP_002795900.1| RadC [Laribacter hongkongensis HLHK9]
gi|254789654|sp|C1D8V1|Y1907_LARHH RecName: Full=UPF0758 protein LHK_01907
gi|226715753|gb|ACO74891.1| RadC [Laribacter hongkongensis HLHK9]
Length = 226
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 51/122 (41%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G AL+ E+L ++L + K +A+ LL +LG + P+ L
Sbjct: 10 ERPREKLLARGPEALSDAELLAILLRTGMAGKTVLDVARQLLLEAGSLGRLLSRPVTELV 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+G A EL +V+ ++R+L + LT Q + Y M+
Sbjct: 70 SSPGLGPAKACELAVVAELARRLLAEKLPVADALTSPQAVHDYLRLAYGMRVQEVVLLLC 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|229524831|ref|ZP_04414236.1| DNA repair protein RadC [Vibrio cholerae bv. albensis VL426]
gi|229338412|gb|EEO03429.1| DNA repair protein RadC [Vibrio cholerae bv. albensis VL426]
Length = 224
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G +L+ E+L + L + ++A LL+ F +L +F A
Sbjct: 12 PREKLLQRGPQSLSDAELLAIFLRTGTHGMNVLALADLLLRDFGSLRALFCASKEQFCRH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT Q + + + F F
Sbjct: 72 KGLGEAKFVQLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|296134038|ref|YP_003641285.1| DNA repair protein RadC [Thermincola sp. JR]
gi|296032616|gb|ADG83384.1| DNA repair protein RadC [Thermincola potens JR]
Length = 231
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 44/121 (36%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R L +G +L+ E++ ++L +A LL F L + GA + +
Sbjct: 18 RPRERLLTEGPGSLSNAELIAILLGTGTRTCTAVQLASQLLSAFGGLKELVGASVEEISS 77
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I IG A ++K + R+ K + + + + +F
Sbjct: 78 IKGIGLAKATQVKAALELAGRLSLLAGEKKYTIRTPEDVAGILMEKMRHYDREHFLAIML 137
Query: 144 I 144
Sbjct: 138 N 138
>gi|310765969|gb|ADP10919.1| DNA repair protein RadC [Erwinia sp. Ejp617]
Length = 223
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G ++L+ E+L + L + ++A+ LL+ F +L + AP + I
Sbjct: 10 PREKLLKCGASSLSDTELLAIFLRTGVRGVHVMTLAQQLLREFGSLHRLMNAPHDRFEAI 69
Query: 85 NRIGKRVALELKLVSVASQRIL-KANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G +L V+ ++R + ++ + L + + F F
Sbjct: 70 HGVGMAKYAQLNAVAELARRCFSCQEALENRVVSSVEQMLDFLNGSLAHREREIFQVIFF 129
Query: 144 IN 145
N
Sbjct: 130 DN 131
>gi|170728880|ref|YP_001762906.1| DNA repair protein RadC [Shewanella woodyi ATCC 51908]
gi|238688685|sp|B1KL05|Y4561_SHEWM RecName: Full=UPF0758 protein Swoo_4561
gi|169814227|gb|ACA88811.1| DNA repair protein RadC [Shewanella woodyi ATCC 51908]
Length = 225
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
RDR ++ G + L+ E+L ++L + +A+ L+ F L V A + +
Sbjct: 12 PRDRLIKFGVSQLSDAEVLAVLLRNGSQGLNAVELARNLINEFGGLREVLAASQSQVCRL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +G +L+ S R+ N K L+ + R + FA
Sbjct: 72 SGMGPVKFAQLRAAVELSSRVSAQNLKRGKILSDPDLTRDYLMRQLRDRAYEVFAILLLD 131
>gi|294012255|ref|YP_003545715.1| DNA repair protein RadC [Sphingobium japonicum UT26S]
gi|292675585|dbj|BAI97103.1| DNA repair protein RadC [Sphingobium japonicum UT26S]
Length = 231
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 56/126 (44%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+GH RLR + + G AL +E++E +L IPR+DTK +AKALL+ F +GG+ A
Sbjct: 13 VGHRARLRQKLAENGGEALHDHELVEYLLALAIPRRDTKPLAKALLREFDGIGGLMAADW 72
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+ + +G +K+V R+L+ + K L Q L +
Sbjct: 73 QAIARVPGMGDTSIAAIKIVQATMLRMLRNEVAEKPVLASWQALLDYLRADMAFLTVERV 132
Query: 139 AYCFSI 144
Sbjct: 133 RVLHLN 138
>gi|153800833|ref|ZP_01955419.1| DNA repair protein RadC [Vibrio cholerae MZO-3]
gi|153825955|ref|ZP_01978622.1| DNA repair protein RadC [Vibrio cholerae MZO-2]
gi|153831399|ref|ZP_01984066.1| DNA repair protein RadC [Vibrio cholerae 623-39]
gi|229521064|ref|ZP_04410485.1| DNA repair protein RadC [Vibrio cholerae TM 11079-80]
gi|229527280|ref|ZP_04416673.1| DNA repair protein RadC [Vibrio cholerae 12129(1)]
gi|262404954|ref|ZP_06081506.1| DNA repair protein RadC [Vibrio sp. RC586]
gi|297581670|ref|ZP_06943592.1| DNA repair protein RadC [Vibrio cholerae RC385]
gi|124123664|gb|EAY42407.1| DNA repair protein RadC [Vibrio cholerae MZO-3]
gi|148873120|gb|EDL71255.1| DNA repair protein RadC [Vibrio cholerae 623-39]
gi|149740363|gb|EDM54499.1| DNA repair protein RadC [Vibrio cholerae MZO-2]
gi|229335288|gb|EEO00772.1| DNA repair protein RadC [Vibrio cholerae 12129(1)]
gi|229341949|gb|EEO06950.1| DNA repair protein RadC [Vibrio cholerae TM 11079-80]
gi|262348793|gb|EEY97934.1| DNA repair protein RadC [Vibrio sp. RC586]
gi|297534077|gb|EFH72916.1| DNA repair protein RadC [Vibrio cholerae RC385]
gi|327483097|gb|AEA77504.1| DNA repair protein RadC [Vibrio cholerae LMA3894-4]
Length = 224
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G +L+ E+L + L + ++A LL+ F +L +F A
Sbjct: 12 PREKLLQRGPQSLSDAELLAIFLRTGTHGMNVLALADLLLRDFGSLRALFCASKEQFCRH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT Q + + + F F
Sbjct: 72 KGLGEAKFVQLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|262040687|ref|ZP_06013925.1| DNA repair protein RadC [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259042051|gb|EEW43084.1| DNA repair protein RadC [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 221
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 50/121 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ G L E+L L L R+D S A+ALL+RF +L + A L +
Sbjct: 9 PREKMLQYGIETLTDVELLALFLRVGTRRQDVLSYAQALLQRFGSLYALLSADKAQLIAV 68
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +G +LK ++ ++R + + L ++ + F F
Sbjct: 69 DGLGLAKYAQLKGIAELARRYFSSQLVEEAALVAPSMTREFLQSQLTEEEREIFMVIFLD 128
Query: 145 N 145
N
Sbjct: 129 N 129
>gi|254427947|ref|ZP_05041654.1| DNA repair protein RadC [Alcanivorax sp. DG881]
gi|196194116|gb|EDX89075.1| DNA repair protein RadC [Alcanivorax sp. DG881]
Length = 224
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 36/124 (29%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ L +G AL+ E+L + L +A+ L L + +
Sbjct: 9 DERPREKLLARGAGALSDAELLAIFLRTGQQGMTAVDLARRQLAGSGGLRAMLDLGPERM 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +G L +R L + L + FA
Sbjct: 69 AHLPGMGTARRALLLAALELGRRYLAEPLERGQPLDNPDKAGQLLTAQLRGLPFEVFACL 128
Query: 142 FSIN 145
F N
Sbjct: 129 FLDN 132
>gi|153953499|ref|YP_001394264.1| DNA repair protein RadC [Clostridium kluyveri DSM 555]
gi|219854121|ref|YP_002471243.1| hypothetical protein CKR_0778 [Clostridium kluyveri NBRC 12016]
gi|189029393|sp|A5N6I5|Y865_CLOK5 RecName: Full=UPF0758 protein CKL_0865
gi|254764433|sp|B9E004|Y778_CLOK1 RecName: Full=UPF0758 protein CKR_0778
gi|146346380|gb|EDK32916.1| DNA repair protein RadC-like protein [Clostridium kluyveri DSM 555]
gi|219567845|dbj|BAH05829.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 228
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R + G AL+ E+L +IL I ++ S++ ++K L G+F + L
Sbjct: 14 ERPRERLFRYGSEALSNSELLAVILGTGIKGENIVSLSNRIIKDNGGLNGIFNSDLEDFV 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ +GK A ++ ++ S+R + Q + V +
Sbjct: 74 SISGVGKAKAAKILAMAELSKRFKSYKDGDDYRICSPQDAAVLVMEEMRGMKQEHLKVIL 133
Query: 143 SI 144
Sbjct: 134 LN 135
>gi|113971925|ref|YP_735718.1| DNA repair protein RadC [Shewanella sp. MR-4]
gi|123324586|sp|Q0HE56|Y3597_SHESM RecName: Full=UPF0758 protein Shewmr4_3597
gi|113886609|gb|ABI40661.1| DNA repair protein RadC [Shewanella sp. MR-4]
Length = 225
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
RD+ L KG L+ E+L ++L + + +A++L++ F L + AP H + +
Sbjct: 12 PRDKLLVKGAAHLSDAELLAVLLRNGLSGLNAVDLARSLIQEFGGLRSLLCAPKHQVCRL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ + ++R+ + N + LT + R ++ FA
Sbjct: 72 PGVGPVKYAQLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLADRSYEVFAILLLD 131
>gi|114045869|ref|YP_736419.1| DNA repair protein RadC [Shewanella sp. MR-7]
gi|117922202|ref|YP_871394.1| DNA repair protein RadC [Shewanella sp. ANA-3]
gi|123030985|sp|Q0HZU3|Y359_SHESR RecName: Full=UPF0758 protein Shewmr7_0359
gi|166218796|sp|A0L1R9|Y3770_SHESA RecName: Full=UPF0758 protein Shewana3_3770
gi|113887311|gb|ABI41362.1| DNA repair protein RadC [Shewanella sp. MR-7]
gi|117614534|gb|ABK49988.1| DNA repair protein RadC [Shewanella sp. ANA-3]
Length = 225
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
RD+ L KG L+ E+L ++L + + +A++L+ F L + AP H + +
Sbjct: 12 PRDKLLVKGAAHLSDAELLAVLLRNGLSGLNAVDLARSLIHEFGGLRSLLCAPKHQVCRL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ + ++R+ + N + LT + R ++ FA
Sbjct: 72 PGVGPVKYAQLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLADRSYEVFAILLLD 131
>gi|71275890|ref|ZP_00652173.1| DNA repair protein RadC [Xylella fastidiosa Dixon]
gi|71901383|ref|ZP_00683476.1| DNA repair protein RadC [Xylella fastidiosa Ann-1]
gi|170729361|ref|YP_001774794.1| DNA repair protein RadC [Xylella fastidiosa M12]
gi|182680681|ref|YP_001828841.1| DNA repair protein RadC [Xylella fastidiosa M23]
gi|71163267|gb|EAO12986.1| DNA repair protein RadC [Xylella fastidiosa Dixon]
gi|71728842|gb|EAO30980.1| DNA repair protein RadC [Xylella fastidiosa Ann-1]
gi|167964154|gb|ACA11164.1| DNA repair protein [Xylella fastidiosa M12]
gi|182630791|gb|ACB91567.1| DNA repair protein RadC [Xylella fastidiosa M23]
Length = 242
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 40/124 (32%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L G L+ E+L + L + D A+ LL L + P L
Sbjct: 27 HERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDL 86
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +G A +L S R L A + + FA
Sbjct: 87 MRLPGLGLARACKLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVL 146
Query: 142 FSIN 145
F N
Sbjct: 147 FLDN 150
>gi|320352527|ref|YP_004193866.1| DNA repair protein RadC [Desulfobulbus propionicus DSM 2032]
gi|320121029|gb|ADW16575.1| DNA repair protein RadC [Desulfobulbus propionicus DSM 2032]
Length = 245
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 54/125 (43%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLRD+ L +G A EI+EL+L PR D K A+A L +F +L V A
Sbjct: 12 GHRQRLRDKLLAQGIEAFTDSEIIELLLTFGTPRSDCKEAARAALAQFKSLPAVLDASPI 71
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
LQ+I IG + L+ + ++R L+ K+++ + +
Sbjct: 72 QLQQIKGIGPKNIFALQFIQGVARRYLRQRIVGKQYVHSSREVADYLIHSMRGLQHEVLT 131
Query: 140 YCFSI 144
F
Sbjct: 132 VVFLD 136
>gi|71899272|ref|ZP_00681434.1| DNA repair protein RadC [Xylella fastidiosa Ann-1]
gi|71731005|gb|EAO33074.1| DNA repair protein RadC [Xylella fastidiosa Ann-1]
Length = 242
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 40/124 (32%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L G L+ E+L + L + D A+ LL L + P L
Sbjct: 27 HERPREKLLTHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDL 86
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +G A +L S R L A + + FA
Sbjct: 87 MRLPGLGLARACKLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVL 146
Query: 142 FSIN 145
F N
Sbjct: 147 FLDN 150
>gi|313899428|ref|ZP_07832938.1| DNA repair protein RadC [Clostridium sp. HGF2]
gi|312955716|gb|EFR37374.1| DNA repair protein RadC [Clostridium sp. HGF2]
Length = 229
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 51/130 (39%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + R R++ LQ G AL+ E+L L+L +A +L+ ++++G +
Sbjct: 2 KVKELNKEERPREKALQHGIAALSNRELLALVLRSGTRSMSALELADEVLRHWSSMGDLG 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A + L ++ I + A+ L +RI + Q L V + +
Sbjct: 62 KANMQELMGLSGIKEAKAISLLAAFELGRRIAFDEVLHAPGIHHPQDILEWVNQQIGFEQ 121
Query: 135 ANNFAYCFSI 144
+F F
Sbjct: 122 QEHFLVLFLN 131
>gi|25014079|sp|Q9PGZ8|Y148_XYLFA RecName: Full=UPF0758 protein XF_0148
Length = 224
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 40/124 (32%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L G L+ E+L + L + D A+ LL L + P L
Sbjct: 9 HERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDL 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +G A +L S R L A + + FA
Sbjct: 69 MRLPGLGLARACKLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVL 128
Query: 142 FSIN 145
F N
Sbjct: 129 FLDN 132
>gi|297616876|ref|YP_003702035.1| DNA repair protein RadC [Syntrophothermus lipocalidus DSM 12680]
gi|297144713|gb|ADI01470.1| DNA repair protein RadC [Syntrophothermus lipocalidus DSM 12680]
Length = 229
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 1/121 (0%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R L GE L+ E+L +++ K +A+ LL + L + A L
Sbjct: 17 RPRERLLAHGEETLSTAELLAIVIGSGTREKTAVQLAEYLLATYRGLRSLRDASCEELSA 76
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ IG A LK +R L A+ ++ + + + + +F +
Sbjct: 77 VRGIGAAKATRLKAALELGRR-LAADVRDRQVIRSPEDVKNKLMEEMRYLDREHFRAVYL 135
Query: 144 I 144
Sbjct: 136 D 136
>gi|302391343|ref|YP_003827163.1| DNA replication and repair protein RadC [Acetohalobium arabaticum
DSM 5501]
gi|302203420|gb|ADL12098.1| DNA replication and repair protein RadC [Acetohalobium arabaticum
DSM 5501]
Length = 229
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 45/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ R R++ + G A++ E+L LI+ +A LL L +
Sbjct: 8 KDLPKEERPREKLCKFGTKAMSTAELLALIIRTGSQSDTAIELANKLLTHTGGLKFIGDL 67
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ LQE+ +G A ++ +RI AN K+ +T Q +
Sbjct: 68 SVEELQEVKGVGLAKAAQISATVELGRRIRLANQETKEIITSPQDVANLLLARLSFLEKE 127
Query: 137 NFAYCFSI 144
+F
Sbjct: 128 HFVTLLLN 135
>gi|15836753|ref|NP_297441.1| DNA repair protein RadC [Xylella fastidiosa 9a5c]
gi|9104937|gb|AAF82961.1|AE003868_7 DNA repair protein [Xylella fastidiosa 9a5c]
Length = 232
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 40/124 (32%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ L G L+ E+L + L + D A+ LL L + P L
Sbjct: 17 HERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDL 76
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +G A +L S R L A + + FA
Sbjct: 77 MRLPGLGLARACKLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVL 136
Query: 142 FSIN 145
F N
Sbjct: 137 FLDN 140
>gi|120597169|ref|YP_961743.1| DNA repair protein RadC [Shewanella sp. W3-18-1]
gi|146291569|ref|YP_001181993.1| DNA repair protein RadC [Shewanella putrefaciens CN-32]
gi|166218795|sp|A4Y2L1|Y462_SHEPC RecName: Full=UPF0758 protein Sputcn32_0462
gi|166218797|sp|A1REU4|Y338_SHESW RecName: Full=UPF0758 protein Sputw3181_0338
gi|120557262|gb|ABM23189.1| DNA repair protein RadC [Shewanella sp. W3-18-1]
gi|145563259|gb|ABP74194.1| DNA repair protein RadC [Shewanella putrefaciens CN-32]
gi|319424742|gb|ADV52816.1| DNA repair protein RadC [Shewanella putrefaciens 200]
Length = 225
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
RD+ LQKG L+ E+L ++L + + +A++L+ F L + AP + + +
Sbjct: 12 PRDKLLQKGAAYLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNLLCAPKNQVCRL 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ + ++R+ + N + LT + R ++ FA
Sbjct: 72 PGVGPVKYAQLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLTDRSYEVFAILLLD 131
>gi|86143951|ref|ZP_01062319.1| putative DNA repair protein [Leeuwenhoekiella blandensis MED217]
gi|85829658|gb|EAQ48121.1| putative DNA repair protein [Leeuwenhoekiella blandensis MED217]
Length = 232
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 1/125 (0%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGVFGAPLHL 80
+R R++ L KG++AL+ E++ +++ + +++K +L L + +
Sbjct: 16 DDRPREKLLHKGKDALSDAELVAILIGSGSRNESAVALSKRILASVDHNLNALGKLSVGQ 75
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L + IG+ A+ + + +R +T ++ F
Sbjct: 76 LMKFKGIGEAKAVSIAAATELGRRRQSDKAEEPTKITGSNAVFRLLQPILGELPHEEFWI 135
Query: 141 CFSIN 145
+ N
Sbjct: 136 LYLNN 140
>gi|86132165|ref|ZP_01050761.1| DNA repair protein RadC [Dokdonia donghaensis MED134]
gi|85817499|gb|EAQ38679.1| DNA repair protein RadC [Dokdonia donghaensis MED134]
Length = 237
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 1/139 (0%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR- 66
K S + +R R++ + KG + L+ E++ +++ + S++K +L +
Sbjct: 7 KDTSSYISIKNWSEDDRPREKLMIKGRSVLSDAELIAILIGSGSREESAVSLSKRILSQA 66
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
L + + L + IG+ A+ + +R +K +T + +
Sbjct: 67 ENNLSELGKLSVKDLMKFKGIGEAKAVTIAAALELGRRRSGGETLSRKRITSSKDAYTIL 126
Query: 127 ERHYPMKNANNFAYCFSIN 145
+ F F N
Sbjct: 127 QPIIGELPHEEFWVLFLNN 145
>gi|325919704|ref|ZP_08181706.1| DNA replication and repair protein RadC [Xanthomonas gardneri ATCC
19865]
gi|325549812|gb|EGD20664.1| DNA replication and repair protein RadC [Xanthomonas gardneri ATCC
19865]
Length = 225
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 47/130 (36%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
H+ R R++ L +G AL+ E+L + + + +D A+ LL R L +
Sbjct: 2 HIHDWPTDERPREKLLARGATALSDAELLAIFVGSGLRGQDAVRTARDLLLRHGPLRVLL 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
P L + +G A +L + R L + + L+ + K
Sbjct: 62 DRPAPALARLPGLGPASACKLNAALELAHRHLMSELERGEALSDPPSVGRYFSQRLRAKA 121
Query: 135 ANNFAYCFSI 144
FA +
Sbjct: 122 YEVFAVLYLD 131
>gi|309389493|gb|ADO77373.1| DNA replication and repair protein RadC [Halanaerobium praevalens
DSM 2228]
Length = 231
Score = 116 bits (292), Expect = 6e-25, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 43/122 (35%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L+KG L+ E+L LI+ + +A+ LL + L G+ L+
Sbjct: 17 ERPREKLLRKGSKFLSNAELLALIIRTGNKERTAVELAQDLLNLYGGLKGLQDLSCEELK 76
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+IN IG A ++ + S RI ++ +
Sbjct: 77 KINGIGTAKAAQINALIELSCRISALKNQKNDLVSNPIQAAELLAAEMRFLKQEVLRVIL 136
Query: 143 SI 144
Sbjct: 137 LD 138
>gi|302384219|ref|YP_003820042.1| DNA repair protein RadC [Brevundimonas subvibrioides ATCC 15264]
gi|302194847|gb|ADL02419.1| DNA repair protein RadC [Brevundimonas subvibrioides ATCC 15264]
Length = 249
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 16 LDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFG 75
+GH RLR R G N L YE+LEL LFR P+ D K IAKALL RF +L V
Sbjct: 19 PHTVGHRERLRCRARSAGLNHLPDYELLELFLFRSQPQGDVKPIAKALLSRFGSLAAVLA 78
Query: 76 APLHLLQEI---------NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
A + + + +G AL+L + +QR+ K + + ++ L +
Sbjct: 79 ASVEDMMTVRTQDLKGRTKAVGMETALDLAALHEVAQRVAKEPATRRPVISSWTALLAYI 138
Query: 127 ERHYPMKNANNFAYCFSIN 145
+ F + N
Sbjct: 139 RLALQHEPREQFRVLYLDN 157
>gi|147677151|ref|YP_001211366.1| DNA repair proteins [Pelotomaculum thermopropionicum SI]
gi|146273248|dbj|BAF58997.1| DNA repair proteins [Pelotomaculum thermopropionicum SI]
Length = 196
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 47/128 (36%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ R R+R L+ G L+ E+L ++L +A ++ RF +L + A
Sbjct: 11 KELPEDLRPRERLLKAGAGVLSEIELLAILLGTGSREATALELASQIMARFGSLRLLVDA 70
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L E+ +G A ++K ++R+ + + + V +
Sbjct: 71 TVEELSEVKGVGLAKASQVKAALELARRLSQLTGPRRPAIRSPDDAAGLVMEEMRHLDRE 130
Query: 137 NFAYCFSI 144
+F
Sbjct: 131 HFRALLLN 138
>gi|30022542|ref|NP_834173.1| DNA repair protein radC [Bacillus cereus ATCC 14579]
gi|229129746|ref|ZP_04258713.1| DNA repair protein radC [Bacillus cereus BDRD-Cer4]
gi|29898100|gb|AAP11374.1| DNA repair protein radC [Bacillus cereus ATCC 14579]
gi|228653662|gb|EEL09533.1| DNA repair protein radC [Bacillus cereus BDRD-Cer4]
Length = 183
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L +F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHQFDGLRMLKDATLEELI 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ IG A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGIGISKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCAKYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|229048171|ref|ZP_04193740.1| DNA repair protein radC [Bacillus cereus AH676]
gi|228723158|gb|EEL74534.1| DNA repair protein radC [Bacillus cereus AH676]
Length = 184
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L +F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHQFDGLRMLKDATLEELI 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ IG A +L +R+++ + + + + C + +F +
Sbjct: 71 SIHGIGISKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCAKYMMEEMRFLQQEHFVCLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|163849132|ref|YP_001637176.1| DNA repair protein RadC [Chloroflexus aurantiacus J-10-fl]
gi|222527106|ref|YP_002571577.1| DNA repair protein RadC [Chloroflexus sp. Y-400-fl]
gi|189029391|sp|A9WAJ7|Y3603_CHLAA RecName: Full=UPF0758 protein Caur_3603
gi|254764431|sp|B9LEQ9|Y3887_CHLSY RecName: Full=UPF0758 protein Chy400_3887
gi|163670421|gb|ABY36787.1| DNA repair protein RadC [Chloroflexus aurantiacus J-10-fl]
gi|222450985|gb|ACM55251.1| DNA repair protein RadC [Chloroflexus sp. Y-400-fl]
Length = 229
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 46/130 (35%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ H++ R+R ++G AL+ E+L ++L + +A+ LL L G+
Sbjct: 5 RIHEQPIHDQPRERLARQGAGALSDAELLAILLRVGTNGTNVLQLAQQLLAESGGLQGLQ 64
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
L ++ +G A +K +R+ ++ + + + +
Sbjct: 65 RLDFQELCRLHGMGVSKAASVKAALEIGRRLARSAIEERFPIRSPADVATLLLVEMSHLD 124
Query: 135 ANNFAYCFSI 144
+
Sbjct: 125 QEHLRTILLD 134
>gi|322835042|ref|YP_004215069.1| DNA repair protein RadC [Rahnella sp. Y9602]
gi|321170243|gb|ADW75942.1| DNA repair protein RadC [Rahnella sp. Y9602]
Length = 226
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G L E+L + L +AK LL+ F +L + A +
Sbjct: 14 PREKLLQQGAKELTDQELLAIYLRTGCRGLHVMDLAKNLLEEFGSLHQLLMADFDAMART 73
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L VS S+R + S + + + ++ + F F
Sbjct: 74 KGMGVAKFSQLVAVSELSRRAYLRHLSAENAMLSPKVIREYLQNLLVFREREVFLVLFLD 133
Query: 145 N 145
N
Sbjct: 134 N 134
>gi|94498367|ref|ZP_01304925.1| hypothetical protein SKA58_11765 [Sphingomonas sp. SKA58]
gi|94422122|gb|EAT07165.1| hypothetical protein SKA58_11765 [Sphingomonas sp. SKA58]
Length = 231
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M++ +K +H D GH RLR + G AL +E++E +L IPR+DTK +AK LL+
Sbjct: 1 MAEQDAKAAH-DGAGHRARLRQKLADAGGEALLDHELIEYLLALAIPRRDTKPLAKLLLR 59
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
F +GG+ A + + +G +K+V + R+L+ + + L Q L
Sbjct: 60 EFGGIGGLMTADWQAIARVPGMGDTSVAAIKIVQATALRMLRNEVAARPVLANWQALLDY 119
Query: 126 VERHYPMKNANNFAYCFSI 144
+
Sbjct: 120 LRADMAHLGVERVRVLHLN 138
>gi|332042741|gb|EGI78941.1| DNA repair protein RadC [Lacinutrix algicola 5H-3-7-4]
Length = 232
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 2/141 (1%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
MS P+ + ++ R++ L KG+ AL+ E++ +++ + ++ K +L
Sbjct: 1 MSNKPT-SFSIKNWSQDDQPREKLLYKGKAALSDAELVAILIGSGNREESAVALCKRILA 59
Query: 66 R-FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
L + + L IG+ A+ + +R + +K +T +
Sbjct: 60 STDNNLSELGKLTIKQLTAFKGIGEAKAISIIAALELGRRRRGSEALERKKITSSKSVFE 119
Query: 125 SVERHYPMKNANNFAYCFSIN 145
++ F + N
Sbjct: 120 LMQPEIGELPHEEFWIIYLNN 140
>gi|294501407|ref|YP_003565107.1| DNA repair protein RadC [Bacillus megaterium QM B1551]
gi|295706755|ref|YP_003599830.1| DNA repair protein RadC [Bacillus megaterium DSM 319]
gi|294351344|gb|ADE71673.1| DNA repair protein RadC [Bacillus megaterium QM B1551]
gi|294804414|gb|ADF41480.1| DNA repair protein RadC [Bacillus megaterium DSM 319]
Length = 228
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 50/123 (40%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R+R + G ++L+ +E++ ++L + ++ +L F L + A L +
Sbjct: 13 DERPRERLVSMGASSLSNHELIAILLRTGTKDESVLQLSNRILTHFEGLQLLQHASLDEM 72
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG A+++ +RI++ S + + + V + + +F
Sbjct: 73 MNIKGIGPAKAIQIIAAIEIGKRIVQRKSSQRYTIHGPEDGANYVMEEMRVLSQEHFVCL 132
Query: 142 FSI 144
+
Sbjct: 133 YLN 135
>gi|260220445|emb|CBA27989.1| DNA repair protein radC homolog [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 239
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 15/135 (11%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK---------------RFAT 69
R++ L +G AL+ E+L ++L I K +A+ LL+ F
Sbjct: 12 PREKLLARGAGALSDAELLAILLRTGIAGKGVLQMAEELLQLKNDSASRTVDGRQGGFGG 71
Query: 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
+ G+ A L+ + +G E+ V ++R + ++ Q ++ H
Sbjct: 72 IAGLLHATADDLKHVKGLGPAKRAEIVAVLELARRAMAQRLQEREVFADPQAVKHYLQLH 131
Query: 130 YPMKNANNFAYCFSI 144
K FA F
Sbjct: 132 LAAKGHEVFAVLFLD 146
>gi|329119079|ref|ZP_08247771.1| DNA repair protein RadC [Neisseria bacilliformis ATCC BAA-1200]
gi|327464818|gb|EGF11111.1| DNA repair protein RadC [Neisseria bacilliformis ATCC BAA-1200]
Length = 224
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 44/128 (34%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ G AL+ E+L ++L I +A+ LL F +LG + A
Sbjct: 4 KDWPEGERPREKLSALGAGALSDAELLAVLLRTGIKGMSAVDLARYLLNEFGSLGRLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
P L +G+ + +V +R+L + L+ Q + +
Sbjct: 64 PERELVRHKGMGQASFTQFAVVREIGRRVLAEELREGELLSDPQAAAAFLRLQLGHERVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSLALLLN 131
>gi|262163757|ref|ZP_06031497.1| DNA repair protein RadC [Vibrio mimicus VM223]
gi|262027737|gb|EEY46402.1| DNA repair protein RadC [Vibrio mimicus VM223]
Length = 224
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G +L+ E+L + L + ++A LL+ F +L +F A
Sbjct: 12 PREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ ++L+ V +QR L LT Q + + + F F
Sbjct: 72 KGLGEAKFVQLQAVLEMTQRYLGETLKRGDALTSPQQSKLYLSSILRDRQREAFYILFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|146278797|ref|YP_001168956.1| DNA repair protein RadC [Rhodobacter sphaeroides ATCC 17025]
gi|145557038|gb|ABP71651.1| DNA repair protein RadC [Rhodobacter sphaeroides ATCC 17025]
Length = 261
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 7 SKAPSKDSHLDYIG-HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
+ AP YI H RLR RF + G A+ YE+LEL+LFR +PR+D K +A+ L+
Sbjct: 30 AAAPIAGRLPSYIADHRKRLRLRFQEGGAAAMPDYELLELLLFRSLPRQDVKPLARRLID 89
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF L V A L EI+ +G+ VA +LKLV +QR+ +A + L+ L
Sbjct: 90 RFGDLNSVIAAEPVRLLEIDGVGEAVAQDLKLVEAVAQRMARARVMHRPVLSSWAALLDY 149
Query: 126 VERHYPMKNANNFAYCFSI 144
+ F F
Sbjct: 150 CHTAMAHRATEQFRVLFLD 168
>gi|258405551|ref|YP_003198293.1| DNA repair protein RadC [Desulfohalobium retbaense DSM 5692]
gi|257797778|gb|ACV68715.1| DNA repair protein RadC [Desulfohalobium retbaense DSM 5692]
Length = 228
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 10 PSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT 69
P ++S YIGH RL+ RF ++ YEILEL+L +P++DTK +AK LL RF T
Sbjct: 2 PRQESKPHYIGHRQRLKSRFDAS-PESVPDYEILELLLGYALPQRDTKPLAKDLLARFGT 60
Query: 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
LG V A LQ++ +G V L L+ R ++ + L+ +
Sbjct: 61 LGSVLTASGQALQDVPGVGPGVGLFFTLLQETRARQEQSGLLGRDVLSSPERVARMARER 120
Query: 130 YPMKNANNFAYCFSIN 145
+ + F N
Sbjct: 121 FGRLSHEEFWVALVDN 136
>gi|188532227|ref|YP_001906024.1| DNA repair protein RadC [Erwinia tasmaniensis Et1/99]
gi|188027269|emb|CAO95112.1| DNA repair protein RadC [Erwinia tasmaniensis Et1/99]
Length = 223
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 1/122 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G + L+ E+L + L S+A+ LL+ F +L + AP Q I
Sbjct: 10 PREKLLKCGVSTLSDNELLAIFLRTGGRGVHVMSLAQRLLQEFGSLYRLMNAPHKEFQAI 69
Query: 85 NRIGKRVALELKLVSVASQRIL-KANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G +L V+ ++R + + + Q L + + F F
Sbjct: 70 HGVGIAKYTQLNAVAELARRCFSCQDAFGNQVVGGVQQMLDYLNSSLAHREREIFQVIFF 129
Query: 144 IN 145
N
Sbjct: 130 DN 131
>gi|299142146|ref|ZP_07035279.1| DNA repair protein RadC [Prevotella oris C735]
gi|298576235|gb|EFI48108.1| DNA repair protein RadC [Prevotella oris C735]
Length = 230
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 42/128 (32%), Gaps = 1/128 (0%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGA 76
+ +R R++ + G +AL+ E+L +++ P + + K ++ +
Sbjct: 10 HWAEEDRPREKLERLGPSALSNAELLGILIGSGTPNESAVDLMKRIMMDCNNNLNTLGKL 69
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L++ +G A+ + +R ++ + + + +
Sbjct: 70 SIQQLEQYKGVGPAKAITILAACELGKRRAMEKAEERQSIDSSKAIYEYLHPRMQDLDVE 129
Query: 137 NFAYCFSI 144
Sbjct: 130 EAWVMLLN 137
>gi|188585153|ref|YP_001916698.1| DNA repair protein RadC [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179349840|gb|ACB84110.1| DNA repair protein RadC [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 241
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 55/139 (39%), Gaps = 2/139 (1%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
+ K P + + +R R+RFL+ G A++ E++ +IL + +A ++L
Sbjct: 12 VKKTPYRTIKS--LPEADRPRERFLKLGPEAISDSELIAIILGTGTKQSSALDLANSILS 69
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
+ ++ + A + L EI IG +++LK + R + +T +
Sbjct: 70 NYVSIFNLLQATISELCEIPGIGYAKSIKLKAAFELANRCMAREQLTMDKITSPEDIFRL 129
Query: 126 VERHYPMKNANNFAYCFSI 144
+ + +F
Sbjct: 130 MNFRLKTETREHFLAVMLN 148
>gi|188993439|ref|YP_001905449.1| DNA repair protein RadC [Xanthomonas campestris pv. campestris str.
B100]
gi|167735199|emb|CAP53411.1| DNA repair protein radC homolog [Xanthomonas campestris pv.
campestris]
Length = 243
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ L +G L+ E+L + + + +D A+ LL R L + P L
Sbjct: 27 DERPREKLLARGAAVLSDAELLAIFVGSGLRGQDAVRTARDLLHRHGPLRCLLDRPAKAL 86
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +G A +L + R L ++ + L+ + +N FA
Sbjct: 87 ARLPGLGPASACKLSAALELANRHLLSDLERGEALSDPSSVGRYFSQRLRARNYEVFAAL 146
Query: 142 FSI 144
F
Sbjct: 147 FLD 149
>gi|309776893|ref|ZP_07671863.1| DNA repair protein RadC [Erysipelotrichaceae bacterium 3_1_53]
gi|308915304|gb|EFP61074.1| DNA repair protein RadC [Erysipelotrichaceae bacterium 3_1_53]
Length = 229
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 52/130 (40%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + R R++ LQ G AL+ E+L L+L +A ++K++ T+G +
Sbjct: 2 KVKELNKEERPREKALQHGIAALSNRELLALVLRSGTRSMSALELADEVMKKWNTMGDLG 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A + L ++ I + A+ L +RI + + + + + + +
Sbjct: 62 KANMQELMGLSGIKEAKAISLSAAFELGRRIAFDDVLHAPGIHHPKDIMEWINQQIGYEQ 121
Query: 135 ANNFAYCFSI 144
+F F
Sbjct: 122 QEHFLVLFLN 131
>gi|261881165|ref|ZP_06007592.1| DNA repair protein RadC [Prevotella bergensis DSM 17361]
gi|270332033|gb|EFA42819.1| DNA repair protein RadC [Prevotella bergensis DSM 17361]
Length = 228
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 49/132 (37%), Gaps = 2/132 (1%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGA 76
+ +R R++ + G +AL+ E+L +++ R+ + + +LK +
Sbjct: 8 HWAEEDRPREKLERLGASALSDAELLAILIGSGSARESAVDLMRRILKDCHNNLNSLGKM 67
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ LQ + +G A+ + +R +++ ++ L + +
Sbjct: 68 SISELQRYHGMGPAKAITILAACELGKRRRESDREQREDLGSATAIYNYMHPKLQDLDVE 127
Query: 137 NFAYCFSINIIF 148
F +N F
Sbjct: 128 EFHVL-LMNQAF 138
>gi|255692445|ref|ZP_05416120.1| DNA repair protein RadC [Bacteroides finegoldii DSM 17565]
gi|260621913|gb|EEX44784.1| DNA repair protein RadC [Bacteroides finegoldii DSM 17565]
Length = 231
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 39/123 (31%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAPLHLL 81
+R R++ ++KG AL+ E+L +++ + + + LL + +
Sbjct: 16 DRPREKMMEKGAAALSDAELLAILIGSGNTEESAVELMRRLLLSCDNNLNSLAKWEVCDY 75
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
IG ++ + +R + + +T + + F
Sbjct: 76 SRFKGIGPAKSITVMAALELGKRRKLQSIKERPQITCSKDIYDIFQPLMCDLEQEEFWAL 135
Query: 142 FSI 144
Sbjct: 136 LLN 138
>gi|294340312|emb|CAZ88693.1| DNA repair protein radC [Thiomonas sp. 3As]
Length = 226
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 50/123 (40%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ L +G +ALA E++ ++L + + +A ALL +F L G+ A L
Sbjct: 11 DARPREKLLARGPHALADAELVAIVLRTGVRGQSALDLAAALLDQFGGLHGLLNASSEQL 70
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
++I +G E+ V ++R L + L + + FA
Sbjct: 71 RKIKGLGAAKYAEIAAVLELARRTLNEQMMQQPLLDSPAAVRDYLRLWLGPQPVEIFAVL 130
Query: 142 FSI 144
F
Sbjct: 131 FLD 133
>gi|237739010|ref|ZP_04569491.1| DNA repair protein radC [Fusobacterium sp. 2_1_31]
gi|229423610|gb|EEO38657.1| DNA repair protein radC [Fusobacterium sp. 2_1_31]
Length = 242
Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Query: 3 DFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
D + K +Y GH R+R RFL KG ++ + YEILE +LF ++DTK IAKA
Sbjct: 5 DNKNVKNKEDLKKAEYKGHRERIRKRFLDKGIHSFSDYEILEFLLFYCNAQEDTKPIAKA 64
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWS---IKKFLTPG 119
+LK F +L VF A + L++I IG A+ +K V + N +T
Sbjct: 65 ILKEFKSLNRVFKADIKELEKIKGIGPISAILIKFVGELLTELYGENLKIETKADKITDK 124
Query: 120 QPCLISVERHYPMKNANNFAYCFS 143
+ L + ++ F +
Sbjct: 125 EALLKFLRNKIGYEDVEKFYVIYL 148
>gi|258516472|ref|YP_003192694.1| DNA repair protein RadC [Desulfotomaculum acetoxidans DSM 771]
gi|257780177|gb|ACV64071.1| DNA repair protein RadC [Desulfotomaculum acetoxidans DSM 771]
Length = 233
Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 42/121 (34%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R L +G L+ E+L ++L +A +L F L + A + L E
Sbjct: 20 RPRERLLNEGVETLSEIELLAILLRTGTASVSAIELATIILTGFQGLRSLMDATVQELNE 79
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I IG A ++K +R+ K + + V + F
Sbjct: 80 IKGIGLAKAAQIKAALELGKRMALKTMEDKPLIKSPEDVAGLVMEDMRYLDREYFRAMLL 139
Query: 144 I 144
Sbjct: 140 N 140
>gi|167580122|ref|ZP_02372996.1| DNA repair protein RadC [Burkholderia thailandensis TXDOH]
Length = 212
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 45/119 (37%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
R+R L +G AL+ E++ L+L +P D +++ LL RF +L + A + +
Sbjct: 1 RERLLARGPAALSDAELVALLLGSGLPGHDVFALSHTLLARFGSLRALLDAAPDDFKGLR 60
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG L V ++R L + + + + F F
Sbjct: 61 GIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCLFLD 119
>gi|73662414|ref|YP_301195.1| putative DNA repair protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123642774|sp|Q49Y92|Y1105_STAS1 RecName: Full=UPF0758 protein SSP1105
gi|72494929|dbj|BAE18250.1| putative DNA repair protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 226
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 2/135 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
++ + +H + R+R L G + L++ E+L +++ + IA LLK L +
Sbjct: 2 KINDLANHQKPRERMLNYGASHLSHAELLAILINTGRKGYSSLDIANELLKSIVNLKELK 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
++ L +I +G AL LK +R+ + K + + +
Sbjct: 62 HLSINDLNKIKGVGLYKALTLKAAFELGERMHSGSVDDKIQINNPKDAADFMMGKMEHLT 121
Query: 135 ANNFAYCFSI--NII 147
F F NII
Sbjct: 122 QEKFIALFLNSKNII 136
>gi|21228893|ref|NP_634815.1| DNA repair protein RadC [Methanosarcina mazei Go1]
gi|25009023|sp|Q8PTC5|Y2791_METMA RecName: Full=UPF0758 protein MM_2791
gi|20907423|gb|AAM32487.1| DNA repair protein [Methanosarcina mazei Go1]
Length = 229
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + R R+R ++ G +L+ E+L ++L ++ S+ +L + + +
Sbjct: 7 RIHDLPEEERPRERLIKNGPESLSNAELLGIVLRTGSREENVISLCSRILMEY-NIKQLS 65
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A + L ++N IGK A ++ V ++R+ K+ ++ + + +
Sbjct: 66 LANVSKLMQVNGIGKAKAAQIAAVFELARRLETFVEEPKRKISSPKDVYTLMYPKMREQK 125
Query: 135 ANNFAYCFSI 144
F +
Sbjct: 126 KEKFITLYLD 135
>gi|59801108|ref|YP_207820.1| DNA repair protein RadC [Neisseria gonorrhoeae FA 1090]
gi|194098788|ref|YP_002001850.1| DNA repair protein RadC [Neisseria gonorrhoeae NCCP11945]
gi|239999080|ref|ZP_04719004.1| DNA repair protein RadC [Neisseria gonorrhoeae 35/02]
gi|240014013|ref|ZP_04720926.1| DNA repair protein RadC [Neisseria gonorrhoeae DGI18]
gi|240016454|ref|ZP_04722994.1| DNA repair protein RadC [Neisseria gonorrhoeae FA6140]
gi|240080573|ref|ZP_04725116.1| DNA repair protein RadC [Neisseria gonorrhoeae FA19]
gi|240113058|ref|ZP_04727548.1| DNA repair protein RadC [Neisseria gonorrhoeae MS11]
gi|240115813|ref|ZP_04729875.1| DNA repair protein RadC [Neisseria gonorrhoeae PID18]
gi|240118111|ref|ZP_04732173.1| DNA repair protein RadC [Neisseria gonorrhoeae PID1]
gi|240121579|ref|ZP_04734541.1| DNA repair protein RadC [Neisseria gonorrhoeae PID24-1]
gi|240123661|ref|ZP_04736617.1| DNA repair protein RadC [Neisseria gonorrhoeae PID332]
gi|240125851|ref|ZP_04738737.1| DNA repair protein RadC [Neisseria gonorrhoeae SK-92-679]
gi|240128360|ref|ZP_04741021.1| DNA repair protein RadC [Neisseria gonorrhoeae SK-93-1035]
gi|254493858|ref|ZP_05107029.1| DNA repair protein [Neisseria gonorrhoeae 1291]
gi|260440370|ref|ZP_05794186.1| DNA repair protein RadC [Neisseria gonorrhoeae DGI2]
gi|268594918|ref|ZP_06129085.1| DNA repair protein RadC [Neisseria gonorrhoeae 35/02]
gi|268596703|ref|ZP_06130870.1| DNA repair protein RadC [Neisseria gonorrhoeae FA19]
gi|268599142|ref|ZP_06133309.1| DNA repair protein RadC [Neisseria gonorrhoeae MS11]
gi|268601488|ref|ZP_06135655.1| DNA repair protein RadC [Neisseria gonorrhoeae PID18]
gi|268603826|ref|ZP_06137993.1| DNA repair protein RadC [Neisseria gonorrhoeae PID1]
gi|268682290|ref|ZP_06149152.1| DNA repair protein RadC [Neisseria gonorrhoeae PID332]
gi|268684448|ref|ZP_06151310.1| DNA repair protein [Neisseria gonorrhoeae SK-92-679]
gi|268686758|ref|ZP_06153620.1| DNA repair protein RadC [Neisseria gonorrhoeae SK-93-1035]
gi|291043667|ref|ZP_06569383.1| DNA repair protein RadC [Neisseria gonorrhoeae DGI2]
gi|293398970|ref|ZP_06643135.1| DNA repair protein radC [Neisseria gonorrhoeae F62]
gi|73913737|sp|Q5F8S9|Y681_NEIG1 RecName: Full=UPF0758 protein NGO0681
gi|238690211|sp|B4RM65|Y1225_NEIG2 RecName: Full=UPF0758 protein NGK_1225
gi|59718003|gb|AAW89408.1| putative DNA repair protein [Neisseria gonorrhoeae FA 1090]
gi|193934078|gb|ACF29902.1| putative DNA repair protein [Neisseria gonorrhoeae NCCP11945]
gi|226512898|gb|EEH62243.1| DNA repair protein [Neisseria gonorrhoeae 1291]
gi|268548307|gb|EEZ43725.1| DNA repair protein RadC [Neisseria gonorrhoeae 35/02]
gi|268550491|gb|EEZ45510.1| DNA repair protein RadC [Neisseria gonorrhoeae FA19]
gi|268583273|gb|EEZ47949.1| DNA repair protein RadC [Neisseria gonorrhoeae MS11]
gi|268585619|gb|EEZ50295.1| DNA repair protein RadC [Neisseria gonorrhoeae PID18]
gi|268587957|gb|EEZ52633.1| DNA repair protein RadC [Neisseria gonorrhoeae PID1]
gi|268622574|gb|EEZ54974.1| DNA repair protein RadC [Neisseria gonorrhoeae PID332]
gi|268624732|gb|EEZ57132.1| DNA repair protein [Neisseria gonorrhoeae SK-92-679]
gi|268627042|gb|EEZ59442.1| DNA repair protein RadC [Neisseria gonorrhoeae SK-93-1035]
gi|291012130|gb|EFE04119.1| DNA repair protein RadC [Neisseria gonorrhoeae DGI2]
gi|291610384|gb|EFF39494.1| DNA repair protein radC [Neisseria gonorrhoeae F62]
gi|317164372|gb|ADV07913.1| DNA repair protein RadC [Neisseria gonorrhoeae TCDC-NG08107]
Length = 225
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 47/128 (36%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G AL+ E+L ++L +A+ LL+ F +LG + A
Sbjct: 4 KQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +G + +V +RIL+ + L+ + H +
Sbjct: 64 EVGKLSAYKGMGTASFTQFAVVREIGRRILEEELQEEITLSDPDTVADYLRFHLGQEKVE 123
Query: 137 NFAYCFSI 144
Sbjct: 124 VSVALLLN 131
>gi|330909700|gb|EGH38214.1| DNA repair protein RadC [Escherichia coli AA86]
Length = 226
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 4/124 (3%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK----ALLKRFATLGGVFGAPLHL 80
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ +
Sbjct: 10 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKTLAKEMLENFGSLYGLLTSEYEQ 69
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
++ IG +LK ++ ++R + L + ++ + F
Sbjct: 70 FSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMV 129
Query: 141 CFSI 144
F
Sbjct: 130 IFLD 133
>gi|29349103|ref|NP_812606.1| putative DNA repair protein [Bacteroides thetaiotaomicron VPI-5482]
gi|253571267|ref|ZP_04848674.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|29341010|gb|AAO78800.1| putative DNA repair protein [Bacteroides thetaiotaomicron VPI-5482]
gi|251839220|gb|EES67304.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 231
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 39/123 (31%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAPLHLL 81
+R R++ ++KG AL+ E+L +++ + + + LL + +
Sbjct: 16 DRPREKMMEKGAAALSDAELLAILIGSGNTEESAVELMRRLLLSCDNNLNSLAKWEVCDY 75
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G ++ + +R N + ++ + + F
Sbjct: 76 SRFKGMGPAKSITVMAALELGKRRKLQNIQERPRISCSRDIYDIFQPVMCDLEQEEFWVL 135
Query: 142 FSI 144
Sbjct: 136 LLN 138
>gi|289550582|ref|YP_003471486.1| DNA repair protein RadC [Staphylococcus lugdunensis HKU09-01]
gi|315658077|ref|ZP_07910949.1| DNA repair protein RadC [Staphylococcus lugdunensis M23590]
gi|289180114|gb|ADC87359.1| DNA repair protein RadC [Staphylococcus lugdunensis HKU09-01]
gi|315496406|gb|EFU84729.1| DNA repair protein RadC [Staphylococcus lugdunensis M23590]
Length = 225
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L GE +L+ E+L +++ + IA ++ L + +H L
Sbjct: 10 EKPRERLLHYGEKSLSNTELLAILINTGRKGSSSIEIANEIMFGKHQLKELKCMTIHQLT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I IG A+ LK +R+ + S K + + + +F F
Sbjct: 70 QIKGIGLHKAVILKAAFELGERMNATHLSEKVKIKSPEDVANLMTSKLKDLEQEHFVALF 129
Query: 143 SI--NII 147
NI+
Sbjct: 130 LDTKNIV 136
>gi|308271126|emb|CBX27735.1| DNA repair protein radC homolog [uncultured Desulfobacterium sp.]
Length = 243
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
MSK +++ GH RLRD+FL+ G + YE++EL+L PRKD K AKA L
Sbjct: 1 MSKDKTQEKG---EGHRQRLRDKFLESGLSGFHDYEVIELLLTLATPRKDCKEAAKAALN 57
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
+F T GV A L EI IG +KLV+ A R L+ K L+ +
Sbjct: 58 KFKTFQGVLEASPGELSEIKGIGPVNLFGIKLVNEAVNRYLEKKLINKDPLSNSKELFDY 117
Query: 126 VERHYPMKNANNFAYCFSI 144
+ + KN F F
Sbjct: 118 LTHNLRDKNIECFEVIFLD 136
>gi|188025457|ref|ZP_02958709.2| hypothetical protein PROSTU_00459 [Providencia stuartii ATCC 25827]
gi|188023530|gb|EDU61570.1| hypothetical protein PROSTU_00459 [Providencia stuartii ATCC 25827]
Length = 222
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL E+L + L + +A+ LLK F +L + A L +
Sbjct: 10 PREKLLAYGAVALTDVELLAIFLRTGRQGESVIELAERLLKEFGSLYLLLQADYSKLSKC 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +L+ +S ++R + + ++ + + + + F F
Sbjct: 70 KGIGVCKFSQLQAISELARRFFAEQFLYEDVISDPNLLKMRLVELFSGQEREVFTVLFLN 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|28211693|ref|NP_782637.1| DNA repair protein RadC [Clostridium tetani E88]
gi|54036238|sp|Q892M1|Y2075_CLOTE RecName: Full=UPF0758 protein CTC_02075
gi|28204135|gb|AAO36574.1| DNA repair protein radC [Clostridium tetani E88]
Length = 228
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ + G +L+ E+L LIL ++ S+ +L+R L G+F A L
Sbjct: 14 ERPREKLTRYGVESLSNIELLALILRTGNKSENVISLCARILERCGGLNGLFNANRGELL 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
IN +G+ A ++ + ++R +T + V
Sbjct: 74 NINGVGEAKASQILALLELTKRFRSFKSGENYNITNPKDAAYLVMEEMRWLKQEYLKVIL 133
Query: 143 SI 144
Sbjct: 134 LN 135
>gi|21233283|ref|NP_639200.1| DNA repair protein RadC [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66770241|ref|YP_245003.1| DNA repair protein RadC [Xanthomonas campestris pv. campestris str.
8004]
gi|25009021|sp|Q8P456|Y3860_XANCP RecName: Full=UPF0758 protein XCC3860
gi|81303811|sp|Q4UPP0|Y3944_XANC8 RecName: Full=UPF0758 protein XC_3944
gi|21115121|gb|AAM43091.1| DNA repair protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66575573|gb|AAY50983.1| DNA repair protein [Xanthomonas campestris pv. campestris str.
8004]
Length = 225
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 46/123 (37%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ L +G L+ E+L + + + +D A+ LL R L + P L
Sbjct: 9 DERPREKLLARGAAVLSDAELLAIFVGSGLRGQDAVRTARDLLHRHGPLRCLLDRPAKAL 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +G A +L + R L ++ + L+ + +N FA
Sbjct: 69 ARLPGLGPASACKLSAALELANRHLLSDLERGEALSDPSSVGRYFSQRLRARNYEVFAAL 128
Query: 142 FSI 144
F
Sbjct: 129 FLD 131
>gi|298386802|ref|ZP_06996357.1| DNA repair protein RadC [Bacteroides sp. 1_1_14]
gi|298260476|gb|EFI03345.1| DNA repair protein RadC [Bacteroides sp. 1_1_14]
Length = 231
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 39/123 (31%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAPLHLL 81
+R R++ ++KG AL+ E+L +++ + + + LL + +
Sbjct: 16 DRPREKMMEKGAAALSDAELLAILIGSGNTEESAVELMRRLLLSCDNNLNSLAKWEVCDY 75
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G ++ + +R N + ++ + + F
Sbjct: 76 SRFKGMGPAKSITVMAALELGKRRKLQNIQERPRISCSRDIYDIFQPVMCDLEQEEFWVL 135
Query: 142 FSI 144
Sbjct: 136 LLN 138
>gi|118444603|ref|YP_877766.1| DNA repair protein RadC [Clostridium novyi NT]
gi|166218779|sp|A0PZG4|Y1687_CLONN RecName: Full=UPF0758 protein NT01CX_1687
gi|118135059|gb|ABK62103.1| DNA repair protein [Clostridium novyi NT]
Length = 228
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 2/138 (1%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
+ + + R R+R ++ G AL+ E++ +IL ++ S++ +LK+ L
Sbjct: 3 NTLKILDLPENERPRERLIKYGSQALSNSELIAIILGTGGRNENVLSLSSRILKQCEGLN 62
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
G+ + + IG A ++ V ++R + V
Sbjct: 63 GLLTLTPEEIMTLKGIGSAKAAKIIAVGELAKRFKAYKSGDVYIIKSPGDVAGLVMEEMK 122
Query: 132 MKNANNFAYCFSI--NII 147
+ NI+
Sbjct: 123 YFKEEHLRVIMLNTKNIV 140
>gi|323141285|ref|ZP_08076181.1| DNA repair protein RadC [Phascolarctobacterium sp. YIT 12067]
gi|322414242|gb|EFY05065.1| DNA repair protein RadC [Phascolarctobacterium sp. YIT 12067]
Length = 252
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 1/143 (0%)
Query: 3 DFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
DF + + + +R R++ +G AL E+L ++L RK IAK
Sbjct: 15 DFSSIDKTTNKESIKNLPLEDRPREKLFLRGVEALTDAELLAILLRTGTARKSALEIAKE 74
Query: 63 LLKRFATLGGVFGA-PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
L + G L+ L +I +G+ A + +RI A K Q
Sbjct: 75 LTADGGLYRRLAGVRDLNELMQIKGMGQAKAATVLAALEIGRRIASARPLDKIRFGCPQD 134
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ F
Sbjct: 135 GAAFLMPRLRYATKEQFLVILLN 157
>gi|260752842|ref|YP_003225735.1| DNA repair protein RadC [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258552205|gb|ACV75151.1| DNA repair protein RadC [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 227
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 60/128 (46%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
Y GH RLRDR L G +AL +E++E +L IPRKDTK +A+ALL F + + A
Sbjct: 8 YQGHRGRLRDRLLTGGADALLDHEVIEYLLALAIPRKDTKPLARALLAEFGDIETLLTAD 67
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
++ + G V LK+V VA+ R+LK L+ Q + + +
Sbjct: 68 PGMIARVKGAGPTVVSALKIVQVAALRLLKTKIKKAPILSGWQALIDYLHADMAFRLTER 127
Query: 138 FAYCFSIN 145
N
Sbjct: 128 CRLLHLDN 135
>gi|242373953|ref|ZP_04819527.1| DNA repair protein RadC [Staphylococcus epidermidis M23864:W1]
gi|242348307|gb|EES39909.1| DNA repair protein RadC [Staphylococcus epidermidis M23864:W1]
Length = 229
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R + G +L+ E+L +++ + IA L+K ++ + ++ L
Sbjct: 10 EKPRERLMNFGAQSLSNVELLAILINTGRKGFSSIDIANELIKNHHSIRELKKLSINDLL 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I IG A+ LK +R+ + K +T + +F
Sbjct: 70 RIKGIGLYKAITLKAAFELGERLNATSTIDKVKITSPGDVAELMMSKMKDLEQEHFVVLL 129
Query: 143 SI--NII 147
NI+
Sbjct: 130 LNSKNIV 136
>gi|160885503|ref|ZP_02066506.1| hypothetical protein BACOVA_03503 [Bacteroides ovatus ATCC 8483]
gi|260172176|ref|ZP_05758588.1| putative DNA repair protein [Bacteroides sp. D2]
gi|293371841|ref|ZP_06618250.1| DNA repair protein RadC [Bacteroides ovatus SD CMC 3f]
gi|299147358|ref|ZP_07040423.1| DNA repair protein RadC [Bacteroides sp. 3_1_23]
gi|315920484|ref|ZP_07916724.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156109125|gb|EDO10870.1| hypothetical protein BACOVA_03503 [Bacteroides ovatus ATCC 8483]
gi|292633185|gb|EFF51757.1| DNA repair protein RadC [Bacteroides ovatus SD CMC 3f]
gi|298514636|gb|EFI38520.1| DNA repair protein RadC [Bacteroides sp. 3_1_23]
gi|313694359|gb|EFS31194.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 231
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 38/123 (30%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAPLHLL 81
+R R++ ++KG AL+ E+L +++ + + + LL + +
Sbjct: 16 DRPREKMMEKGAAALSDAELLAILIGSGNTEESAVELMRRLLLSCDNNLNSLAKWEVCDY 75
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G ++ + +R + +T + + F
Sbjct: 76 SSFKGMGPAKSITVMAALELGKRRKLQETKERLRITCSKDIYDIFQPIMCDLEQEEFWVL 135
Query: 142 FSI 144
Sbjct: 136 LLN 138
>gi|163752940|ref|ZP_02160064.1| putative DNA repair protein [Kordia algicida OT-1]
gi|161326672|gb|EDP97997.1| putative DNA repair protein [Kordia algicida OT-1]
Length = 231
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 1/136 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ + Y +R R++ KG+ AL+ E+L +++ + S++K +L
Sbjct: 4 NNLQSIKYWSKDDRPREKLADKGKTALSNAELLAILIRLGNKNESAVSLSKRILASVGGN 63
Query: 71 -GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
+ L++ N IG A+ + +R K +T + +
Sbjct: 64 LNELGKLSSDQLKKFNGIGLVKAITIIAALELGKRRQIETKKELKKITSSRMVFEIMHPI 123
Query: 130 YPMKNANNFAYCFSIN 145
F + N
Sbjct: 124 IGELPHEEFWIIYLNN 139
>gi|56551559|ref|YP_162398.1| DNA repair protein RadC [Zymomonas mobilis subsp. mobilis ZM4]
gi|241761310|ref|ZP_04759398.1| DNA repair protein RadC [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|56543133|gb|AAV89287.1| DNA repair protein RadC [Zymomonas mobilis subsp. mobilis ZM4]
gi|241374217|gb|EER63714.1| DNA repair protein RadC [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 227
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 59/128 (46%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
Y GH RLRDR L G +AL +E++E +L IPRKDTK +A+ALL F + + A
Sbjct: 8 YQGHRGRLRDRLLTGGADALLDHEVIEYLLALAIPRKDTKPLARALLAEFGDIETLLTAD 67
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
++ + G V LK+ VA+ R+LK L+ Q + + +
Sbjct: 68 PGMIARVKGAGPTVVSALKIAQVAALRLLKTKIKKAPILSGWQALIDYLHADMAFRLTER 127
Query: 138 FAYCFSIN 145
N
Sbjct: 128 CRLLHLDN 135
>gi|168187572|ref|ZP_02622207.1| DNA repair protein [Clostridium botulinum C str. Eklund]
gi|169294516|gb|EDS76649.1| DNA repair protein [Clostridium botulinum C str. Eklund]
Length = 228
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R ++ G L+ E++ +IL ++ S++ LK+ L G+ +
Sbjct: 14 ERPRERLIKYGSQVLSNSELIAIILRTGGRNENVLSLSSRTLKQCGGLNGLLTLTPEEIM 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ IG+ A ++ V ++R + V +
Sbjct: 74 TLKGIGRAKATQIIAVGELAKRFKAYKSGDIYIIKSPSDVAGLVMEEMTYFKEEHLRVIM 133
Query: 143 SI--NII 147
N++
Sbjct: 134 LNTKNVV 140
>gi|281425091|ref|ZP_06256004.1| DNA repair protein RadC [Prevotella oris F0302]
gi|281400935|gb|EFB31766.1| DNA repair protein RadC [Prevotella oris F0302]
Length = 234
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 42/128 (32%), Gaps = 1/128 (0%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGA 76
+ +R R++ + G +AL+ E+L +++ P + + K ++ +
Sbjct: 14 HWAEEDRPREKLERLGPSALSNAELLGILIGSGTPNESAVDLMKRIMMDCNNNLNTLGKL 73
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L++ +G A+ + +R ++ + + + +
Sbjct: 74 SIRQLEQYKGVGPAKAITILAACELGKRRAMEKAEERQSIDSSKAIYEYLHPRMQDLDVE 133
Query: 137 NFAYCFSI 144
Sbjct: 134 EAWVMLLN 141
>gi|326403686|ref|YP_004283768.1| DNA repair protein RadC [Acidiphilium multivorum AIU301]
gi|325050548|dbj|BAJ80886.1| DNA repair protein RadC [Acidiphilium multivorum AIU301]
Length = 255
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 70/144 (48%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
LE P GH RLR R L+ G ALA +EILE++LF +PR+DTK IA
Sbjct: 19 LEGQSPDDEPHGSDVHGATGHRARLRARLLKAGPEALADHEILEMVLFLAVPRRDTKPIA 78
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
+AL++RF + G AP+ L+ + +G+ A LK+V A+ R+ KA + + L+
Sbjct: 79 RALVRRFGSYAGAIAAPIGELRGVEGLGEAGAAALKIVQAAALRLAKAEIAYRPVLSHWD 138
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
+ + + F
Sbjct: 139 RLIEYLTAVLARERVEQARALFLD 162
>gi|163786204|ref|ZP_02180652.1| putative DNA repair protein [Flavobacteriales bacterium ALC-1]
gi|159878064|gb|EDP72120.1| putative DNA repair protein [Flavobacteriales bacterium ALC-1]
Length = 232
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 2/141 (1%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
MSK + ++ R++ KG+ L+ E++ +++ + + K +L
Sbjct: 1 MSKK-QTSFSIKNWSQDDQPREKLRDKGKTVLSDAELVAILIGSGSREESAVDLCKRILA 59
Query: 66 R-FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
R L + + L E IG+ A+ + +R + + +T +
Sbjct: 60 RVDNNLNALGKLSIKQLMEFKGIGEAKAISITAALELGRRRRLEDSIQLEKVTSSRSVYN 119
Query: 125 SVERHYPMKNANNFAYCFSIN 145
++ F + N
Sbjct: 120 IMQPILGELPHEEFWILYLNN 140
>gi|296535628|ref|ZP_06897807.1| DNA repair protein RadC [Roseomonas cervicalis ATCC 49957]
gi|296264052|gb|EFH10498.1| DNA repair protein RadC [Roseomonas cervicalis ATCC 49957]
Length = 297
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 9 APSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA 68
+P + GH RLR R L++G ALA YE+LE++LF DTK +AKAL+ R+
Sbjct: 71 SPFPGTGPH--GHRGRLRSRLLERGPGALADYEVLEMLLFFAFKTGDTKPLAKALINRYG 128
Query: 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
+ V AP L E +G+ LKLV A+ R+ +A + L L +
Sbjct: 129 SFAAVLAAPQQELLETPGLGEHSVSALKLVQDAALRLARAEVAEHPVLNNWDRLLDYLNA 188
Query: 129 HYPMKNANNFAYCFSI 144
+ F F
Sbjct: 189 AVSREKIEQFRILFLD 204
>gi|312143465|ref|YP_003994911.1| DNA repair protein RadC [Halanaerobium sp. 'sapolanicus']
gi|311904116|gb|ADQ14557.1| DNA repair protein RadC [Halanaerobium sp. 'sapolanicus']
Length = 231
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 51/137 (37%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
++P K + + R R++ L++G + L+ E+L LI+ ++ +++ LL F
Sbjct: 2 ESPEKGFTIKELPAEERPREKVLKRGSSYLSNAELLALIIRTGNRKRTAVELSQDLLNSF 61
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
L + LQE+ IG A ++ V ++RI K ++ +
Sbjct: 62 GGLREILDLSCEELQEVKGIGLAKAAQIVAVVELAKRISSIKNYEKDLVSNPVQAAELLA 121
Query: 128 RHYPMKNANNFAYCFSI 144
Sbjct: 122 SEMRFLKQEVLRTILLD 138
>gi|88803500|ref|ZP_01119025.1| putative DNA repair protein [Polaribacter irgensii 23-P]
gi|88780512|gb|EAR11692.1| putative DNA repair protein [Polaribacter irgensii 23-P]
Length = 228
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 1/125 (0%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGVFGAPLHL 80
+R R++ + KG NAL+ E++ +++ + +++K +LK L + +
Sbjct: 12 DDRPREKLVAKGRNALSDAELIAILIGSGNREETAVALSKRILKTVNGNLNALAKLSVEK 71
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L IG A+ + +R + +T +++ F
Sbjct: 72 LTAFKGIGLAKAISIITALELGKRKQLEIALERPKITGSADVANTMQSIIGHLEHEEFWV 131
Query: 141 CFSIN 145
+ N
Sbjct: 132 IYLNN 136
>gi|148260493|ref|YP_001234620.1| DNA repair protein RadC [Acidiphilium cryptum JF-5]
gi|146402174|gb|ABQ30701.1| DNA repair protein RadC [Acidiphilium cryptum JF-5]
Length = 255
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 69/144 (47%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
LE P GH RLR R L+ G ALA +EILE++LF +PR+DTK IA
Sbjct: 19 LEGQSPDGEPHGSDVHGATGHRARLRARLLKAGPEALADHEILEMVLFLAVPRRDTKPIA 78
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
+AL++RF + G AP+ L+ + +G+ A LK+V A+ R+ KA + + L
Sbjct: 79 RALVRRFGSYAGAIAAPIGELRGVEGLGEAGAAALKIVQAAALRLAKAEIAYRPVLNHWD 138
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
+ + + F
Sbjct: 139 RLIEYLTAVLARERVEQARALFLD 162
>gi|254247438|ref|ZP_04940759.1| DNA repair protein RadC [Burkholderia cenocepacia PC184]
gi|124872214|gb|EAY63930.1| DNA repair protein RadC [Burkholderia cenocepacia PC184]
Length = 257
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L++G AL E++ L+L P D A+AL+ +F TL G+ A +
Sbjct: 43 ERPRERLLERGPAALTDDELIALLLGTGKPGHDVFVTARALVDQFGTLHGLLEATADDFE 102
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
IG + L V+ ++R+L + + + + F +
Sbjct: 103 AHPGIGPARSARLVAVTEIARRMLVEKAEERMQIDSPGAVEDCLRLKIGTRQYEVFIAVY 162
Query: 143 SI 144
Sbjct: 163 LD 164
>gi|242242925|ref|ZP_04797370.1| DNA repair protein RadC [Staphylococcus epidermidis W23144]
gi|242233640|gb|EES35952.1| DNA repair protein RadC [Staphylococcus epidermidis W23144]
Length = 226
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 2/128 (1%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H + R+R + G L+ E+L ++L + IA LLK+ +T+ + ++ L
Sbjct: 9 HEKPRERLITYGAKTLSNVELLAILLNTGRKGFSSIDIANELLKQQSTIRDLKKMSINDL 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+I IG A+ L+ +RI + K +T + +F
Sbjct: 69 LKIKGIGLYKAVILQAAFELGERINSTSTLDKVQITHPSDVASLMMSTMKDLEQEHFVVL 128
Query: 142 FSI--NII 147
NI+
Sbjct: 129 LLNSKNIV 136
>gi|322382581|ref|ZP_08056459.1| RadC-like protein [Paenibacillus larvae subsp. larvae B-3650]
gi|321153436|gb|EFX45843.1| RadC-like protein [Paenibacillus larvae subsp. larvae B-3650]
Length = 209
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 44/116 (37%)
Query: 29 FLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIG 88
LQ G L+ E+L ++L + +A+ +L + G+ A + L +I IG
Sbjct: 1 MLQFGPQVLSNAELLAVLLRTGTLAESAVHLAERVLIDCEGIRGLVDASIDQLTQIRGIG 60
Query: 89 KRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
AL+++ +RI ++ + + + + +F F
Sbjct: 61 TAKALQIQEGIELGRRIARSTLPETMVIRSPRDVADLMTEDLRYLHKEHFVCLFLN 116
>gi|107023439|ref|YP_621766.1| DNA repair protein RadC [Burkholderia cenocepacia AU 1054]
gi|116690521|ref|YP_836144.1| DNA repair protein RadC [Burkholderia cenocepacia HI2424]
gi|170733862|ref|YP_001765809.1| DNA repair protein RadC [Burkholderia cenocepacia MC0-3]
gi|123244775|sp|Q1BUB2|Y1890_BURCA RecName: Full=UPF0758 protein Bcen_1890
gi|171855185|sp|A0K9S4|Y2501_BURCH RecName: Full=UPF0758 protein Bcen2424_2501
gi|238688599|sp|B1JXB2|Y2526_BURCC RecName: Full=UPF0758 protein Bcenmc03_2526
gi|105893628|gb|ABF76793.1| DNA replication and repair protein RadC [Burkholderia cenocepacia
AU 1054]
gi|116648610|gb|ABK09251.1| DNA replication and repair protein RadC [Burkholderia cenocepacia
HI2424]
gi|169817104|gb|ACA91687.1| DNA repair protein RadC [Burkholderia cenocepacia MC0-3]
Length = 257
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L++G AL E++ L+L P D A+AL+ +F TL G+ A +
Sbjct: 43 ERPRERLLERGPAALTDDELIALLLGTGKPGHDVFVTARALVDQFGTLHGLLEATADDFE 102
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
IG + L V+ ++R+L + + + + F +
Sbjct: 103 AHPGIGPARSARLVAVTEIARRMLVEKAEERMQIDSPGAVEDCLRLKIGTRQYEVFIAVY 162
Query: 143 SI 144
Sbjct: 163 LD 164
>gi|242278123|ref|YP_002990252.1| DNA repair protein RadC [Desulfovibrio salexigens DSM 2638]
gi|242121017|gb|ACS78713.1| DNA repair protein RadC [Desulfovibrio salexigens DSM 2638]
Length = 225
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
Y GH RL+++ K +LA YEILEL+L +++PR+DTK +AK LL F L G
Sbjct: 2 KDKPHYYGHRQRLKEKL-GKDSTSLADYEILELLLGQVLPRRDTKPLAKELLAEFGGLSG 60
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
VF AP L++ IG V + L+ RI + + K+ ++ +
Sbjct: 61 VFRAPEEQLKKFKGIGPGVLIFFTLMREFWTRIAEEPMNGKEAISSPDVVYKAAMARIGN 120
Query: 133 KNANNFAYCFSIN 145
+ F N
Sbjct: 121 LSKEEFWIALVNN 133
>gi|330684041|gb|EGG95798.1| DNA repair protein RadC [Staphylococcus epidermidis VCU121]
Length = 227
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R + G +L+ E+L +++ + IA LL +L + ++ L
Sbjct: 10 EKPRERLVNNGAASLSNSELLAILINTGRKGCSSIEIANELLSGIKSLKELKKFSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG A+ LK +RI + +T + +F
Sbjct: 70 KVKGIGYHKAITLKAAFEIGERINSVSQHEVIKITCPADVADLMMSKLKDLQQEHFYVLL 129
Query: 143 SI--NII 147
NI+
Sbjct: 130 LNSKNIV 136
>gi|20090827|ref|NP_616902.1| DNA repair protein RadC [Methanosarcina acetivorans C2A]
gi|25009026|sp|Q8TPD4|Y1979_METAC RecName: Full=UPF0758 protein MA_1979
gi|19915895|gb|AAM05382.1| DNA repair protein [Methanosarcina acetivorans C2A]
Length = 229
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + +R R+R ++ G +L+ E+L ++L ++ S+ +L + + +
Sbjct: 7 RIHDLPEEDRPRERLIRSGPESLSNAELLGIVLRTGSKEENVISLCSRILAEY-NIKQLS 65
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A + L +++ +GK A ++ V ++R+ K+ + + + +
Sbjct: 66 LANVSRLTQVHGVGKAKAAQIAAVFELARRLETFVEEPKRKICSPKDVYALMYPRMREQK 125
Query: 135 ANNFAYCFSI 144
F +
Sbjct: 126 KEKFITLYLD 135
>gi|314933816|ref|ZP_07841181.1| DNA repair protein RadC [Staphylococcus caprae C87]
gi|313653966|gb|EFS17723.1| DNA repair protein RadC [Staphylococcus caprae C87]
Length = 227
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R + G +L+ E+L +++ + IA L+K ++ + ++ L
Sbjct: 10 EKPRERLMNYGAKSLSNVELLAILINTGRKGFSSIDIANELIKSHHSIRHLKKLSINDLL 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG A+ L+ +R+ ++ K +T + + +F
Sbjct: 70 KVKGIGLYKAIILQAAFELGERLNASSTIDKVKITHPSDVADLMMSSMKDLDQEHFVVLL 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|301060527|ref|ZP_07201367.1| putative DNA repair protein RadC [delta proteobacterium NaphS2]
gi|300445370|gb|EFK09295.1| putative DNA repair protein RadC [delta proteobacterium NaphS2]
Length = 243
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 54/125 (43%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
GH RLR RFL G E++E +L PR D K+ A+ ++ F TL GV AP
Sbjct: 11 TGHRERLRQRFLNGGLEQFTDEEVVEFLLTLGTPRGDLKNAARDAMRAFGTLSGVLSAPR 70
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L I IG++ AL L LV ++R L+ + K F Q + F
Sbjct: 71 KKLMGIRGIGEKNALYLGLVHQTAKRYLRDRIAGKTFFGSSQAVFDYLFHSMRDLKREVF 130
Query: 139 AYCFS 143
F
Sbjct: 131 RVFFL 135
>gi|223044114|ref|ZP_03614153.1| DNA repair protein RadC [Staphylococcus capitis SK14]
gi|222442508|gb|EEE48614.1| DNA repair protein RadC [Staphylococcus capitis SK14]
Length = 227
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R + G +L+ E+L +++ + IA L+K ++ + ++ L
Sbjct: 10 EKPRERLMNYGAKSLSNVELLAILINTGRKGFSSIDIANELIKSHHSIRDLKKLSINDLL 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG A+ L+ +R+ ++ K +T + + +F
Sbjct: 70 KVKGIGLYKAIILQAAFELGERLNASSTIDKVKITHPSDVADLMMSSMKDLDQEHFLVLL 129
Query: 143 SI--NII 147
NI+
Sbjct: 130 LNSKNIV 136
>gi|239637541|ref|ZP_04678513.1| DNA repair protein RadC [Staphylococcus warneri L37603]
gi|239596759|gb|EEQ79284.1| DNA repair protein RadC [Staphylococcus warneri L37603]
Length = 227
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R + G +L+ E+L +++ + IA LL ATL + ++ L
Sbjct: 10 EKPRERLVSNGAASLSNSELLAILINTGRKGCSSIEIANELLSGIATLKELKKLSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG A+ LK +RI + +T + +F
Sbjct: 70 KVKGIGYHKAITLKAAFEIGERINSVSQQEVFKITCPADVADLMMSKLKDLQQEHFYVLL 129
Query: 143 SI--NII 147
NI+
Sbjct: 130 LNSKNIV 136
>gi|291528989|emb|CBK94575.1| DNA replication and repair protein RadC [Eubacterium rectale
M104/1]
Length = 229
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-RFATLGGVFGAPLHLL 81
R ++FL G + L+ ++L +I+ K IA+ +L R L ++ L
Sbjct: 14 ERPYEKFLSLGASGLSDADLLAIIIKTGTRDKTVIDIAQDILSGRHGNLLNLYEMSYEEL 73
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG+ A++LK ++ S RI K + Q
Sbjct: 74 LSIPGIGQIKAIQLKAIAELSLRIAKTKKVQSIRMNNPQTIADYYMEQMRHLTNEVVICA 133
Query: 142 FSI 144
+
Sbjct: 134 YFD 136
>gi|291524848|emb|CBK90435.1| DNA replication and repair protein RadC [Eubacterium rectale DSM
17629]
Length = 229
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-RFATLGGVFGAPLHLL 81
R ++FL G + L+ ++L +I+ K IA+ +L R L ++ L
Sbjct: 14 ERPYEKFLSLGASGLSDADLLAIIIKTGTRDKTVIDIAQDILSGRHGNLLNLYEMSYEEL 73
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG+ A++LK ++ S RI K + Q
Sbjct: 74 LSIPGIGQIKAIQLKAIAELSLRIAKTKKVQSIRMNNPQTIADYYMEQMRHLTNEVVICA 133
Query: 142 FSI 144
+
Sbjct: 134 YFD 136
>gi|57867122|ref|YP_188799.1| truncated DNA repair protein RadC [Staphylococcus epidermidis
RP62A]
gi|57637780|gb|AAW54568.1| truncated DNA repair protein RadC [Staphylococcus epidermidis
RP62A]
Length = 184
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 2/128 (1%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H + R+R + G +L+ E+L ++L + IA LLK+ +T+ + ++ L
Sbjct: 9 HEKPRERLITYGAKSLSNVELLAILLNTGRKGFSSIDIANELLKQQSTIRDLKKLSINDL 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+I IG A+ ++ +RI + K +T + +F
Sbjct: 69 LKIKGIGLYKAVIIQAAFELGERINSTSTFDKVQITHPSDVASLMMSTMKDLEQEHFVVL 128
Query: 142 FSI--NII 147
NI+
Sbjct: 129 LLNSKNIV 136
>gi|27468254|ref|NP_764891.1| DNA repair protein RadC-like protein [Staphylococcus epidermidis
ATCC 12228]
gi|251811058|ref|ZP_04825531.1| DNA repair protein RadC [Staphylococcus epidermidis BCM-HMP0060]
gi|282875922|ref|ZP_06284789.1| DNA repair protein RadC [Staphylococcus epidermidis SK135]
gi|293366390|ref|ZP_06613069.1| DNA repair protein RadC [Staphylococcus epidermidis
M23864:W2(grey)]
gi|38372483|sp|Q8CNZ4|Y1336_STAES RecName: Full=UPF0758 protein SE_1336
gi|27315800|gb|AAO04935.1|AE016748_169 DNA repair protein RadC-like protein [Staphylococcus epidermidis
ATCC 12228]
gi|251805434|gb|EES58091.1| DNA repair protein RadC [Staphylococcus epidermidis BCM-HMP0060]
gi|281294947|gb|EFA87474.1| DNA repair protein RadC [Staphylococcus epidermidis SK135]
gi|291319515|gb|EFE59882.1| DNA repair protein RadC [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329733795|gb|EGG70121.1| DNA repair protein RadC [Staphylococcus epidermidis VCU045]
gi|329737143|gb|EGG73397.1| DNA repair protein RadC [Staphylococcus epidermidis VCU028]
Length = 226
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 2/128 (1%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H + R+R + G +L+ E+L ++L + IA LLK+ +T+ + ++ L
Sbjct: 9 HEKPRERLITYGAKSLSNVELLAILLNTGRKGFSSIDIANELLKQQSTIRDLKKLSINDL 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+I IG A+ L+ +RI + K +T + +F
Sbjct: 69 LKIKGIGLYKAVILQAAFELGERINSTSTFDKVQITHPSDVASLMMSTMKDLEQEHFVVL 128
Query: 142 FSI--NII 147
NI+
Sbjct: 129 LLNSKNIV 136
>gi|114328318|ref|YP_745475.1| DNA repair protein radC [Granulibacter bethesdensis CGDNIH1]
gi|114316492|gb|ABI62552.1| DNA repair protein radC [Granulibacter bethesdensis CGDNIH1]
Length = 271
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 62/126 (49%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH R+R R L G ALA YE+LE++LF +PR+DTK +AK LL F + V A
Sbjct: 54 GHRARMRQRLLTHGPEALADYEMLEMLLFLALPRRDTKPLAKDLLNHFGSFAAVISASPR 113
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L I +G+ A L LV AS R+L+A+ + L + + + + F
Sbjct: 114 ELTTIKGVGEAGAAALALVRAASLRLLRADAVAQPVLNNWERLIAYLNASLAREKNEQFR 173
Query: 140 YCFSIN 145
F N
Sbjct: 174 VLFLDN 179
>gi|108804367|ref|YP_644304.1| DNA repair protein RadC [Rubrobacter xylanophilus DSM 9941]
gi|122975977|sp|Q1AVT6|Y1530_RUBXD RecName: Full=UPF0758 protein Rxyl_1530
gi|108765610|gb|ABG04492.1| DNA repair protein RadC [Rubrobacter xylanophilus DSM 9941]
Length = 227
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 48/121 (39%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R L G +AL+ E+L ++ K +A ++ L +FGA +H L++
Sbjct: 15 RPRERLLAGGASALSDAELLGVLFGIGSREKTAVELAGDVISGAGGLHNLFGASVHELKQ 74
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ IG+ A L ++R+ A + ++ + + +F
Sbjct: 75 VKGIGEAKACILLAALELARRLSVARNPGRPVISSPADVDGLLRGRIANLDREHFVVVLL 134
Query: 144 I 144
Sbjct: 135 N 135
>gi|254292990|ref|YP_003059013.1| DNA repair protein RadC [Hirschia baltica ATCC 49814]
gi|254041521|gb|ACT58316.1| DNA repair protein RadC [Hirschia baltica ATCC 49814]
Length = 272
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 69/142 (48%)
Query: 4 FRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
+ + P Y GH +RLRDR LQ N L YE+LEL+LF IPR+D K +AKAL
Sbjct: 39 AQPAAKPKSKPVKHYHGHRDRLRDRVLQGHGNTLPDYELLELLLFAFIPRRDVKPVAKAL 98
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
+ +F + GV AP+ L+E++ IG+ A ++ + +QR + ++ L
Sbjct: 99 IDKFGGISGVMAAPIKRLKEVDGIGETCATYIQATHLLNQRCSLEEVKARPIISNWGALL 158
Query: 124 ISVERHYPMKNANNFAYCFSIN 145
V + F F +
Sbjct: 159 SHVRIALQHETEEQFRVLFLDH 180
>gi|307730752|ref|YP_003907976.1| DNA repair protein RadC [Burkholderia sp. CCGE1003]
gi|307585287|gb|ADN58685.1| DNA repair protein RadC [Burkholderia sp. CCGE1003]
Length = 214
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 47/120 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G L+ E++ L+L +P D S+A+ LL RF +L + A +
Sbjct: 2 PRERLIEQGPGVLSDLEMIVLVLGSGLPGHDVFSVARELLDRFGSLRAMLDATYADFDGL 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG +L + ++R L + + + + + F F
Sbjct: 62 RGIGPAKKAQLLAIMEMARRSLVDKMRRRSLMNSPEVVENYLRLLIRGRPQEVFVSLFLD 121
>gi|260893389|ref|YP_003239486.1| DNA repair protein RadC [Ammonifex degensii KC4]
gi|260865530|gb|ACX52636.1| DNA repair protein RadC [Ammonifex degensii KC4]
Length = 232
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 49/139 (35%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M + + + + R R+R ++G +AL+ E+L +IL R +A+ LL
Sbjct: 1 MKEEKTYRVSIKELPPSTRPRERLWREGASALSEVELLAIILRTGSARGSALDLARFLLA 60
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
F L G+ + L + +G+ A ++ +R+ S + +
Sbjct: 61 NFGGLKGLATTAVQELSSVPGMGEAKAAQVAAALELGRRLGTLEVSSRPVINSPAAAAQL 120
Query: 126 VERHYPMKNANNFAYCFSI 144
V F
Sbjct: 121 VVPTMAHLEQEEFRVILLD 139
>gi|51244567|ref|YP_064451.1| DNA repair protein RadC [Desulfotalea psychrophila LSv54]
gi|50875604|emb|CAG35444.1| related to DNA repair protein RadC [Desulfotalea psychrophila
LSv54]
Length = 249
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 57/125 (45%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH +RLR R+ ++G + L+ EI+EL+L PR D K A+ALL+++ + V A
Sbjct: 16 GHRDRLRARYFERGLDGLSDAEIIELLLSFGTPRADCKLQARALLEKYTSFARVLEASPV 75
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
LQE+ +G + + + + + R L+ K +L + + F
Sbjct: 76 ALQEVKGVGPKNSFAISFIHAVAARYLQLRLEGKSYLHSSTEVVEYLSYRMRGLKKEVFC 135
Query: 140 YCFSI 144
F
Sbjct: 136 VVFLD 140
>gi|221211489|ref|ZP_03584468.1| DNA repair protein RadC [Burkholderia multivorans CGD1]
gi|221168850|gb|EEE01318.1| DNA repair protein RadC [Burkholderia multivorans CGD1]
Length = 256
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 7 SKAPSKDSHLDYIGHHNRL--------RDRFLQKGENALAYYEILELILFRLIPRKDTKS 58
AP + + D R R+R L++G AL E++ L+L + +
Sbjct: 19 PPAPPERAQPD-APRRRRPGNWRPNLPRERLLERGPAALTDDELVALLLGTGVRGHSVFA 77
Query: 59 IAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTP 118
A+ALL RF +L G+ A IG A L ++ ++R L +++ +
Sbjct: 78 SARALLVRFGSLRGLLDATPADFGACPGIGPARAALLSAITELARRALAEKALLRRPIDS 137
Query: 119 GQPCLISVERHYPMKNANNFAYCFSI 144
+ + F +
Sbjct: 138 PAAVDDYLRLKIGTRPYEVFVTLYLD 163
>gi|322516365|ref|ZP_08069290.1| DNA repair protein RadC [Streptococcus vestibularis ATCC 49124]
gi|322125098|gb|EFX96491.1| DNA repair protein RadC [Streptococcus vestibularis ATCC 49124]
Length = 228
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R LQKG L+ E+L ++L + S+A +L +L + L+ LQEI
Sbjct: 13 PRERLLQKGAEVLSDQELLAIVLRTGTKSESVLSMANRILTGMTSLADLSRLSLNELQEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ ++ELK + ++RI KA + + + Q + K + +
Sbjct: 73 PGIGRVKSIELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLD 132
>gi|55823375|ref|YP_141816.1| DNA repair protein RadC [Streptococcus thermophilus CNRZ1066]
gi|73913743|sp|Q5LYU6|Y1465_STRT1 RecName: Full=UPF0758 protein str1465
gi|55739360|gb|AAV63001.1| DNA repair protein [Streptococcus thermophilus CNRZ1066]
Length = 228
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R LQKG L+ E+L ++L + S+A +LK +L + L+ LQEI
Sbjct: 13 PRERLLQKGAEVLSDQELLAIVLRTGTKSESVLSMANRILKGMTSLADLSRLSLNELQEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ ++ELK + ++RI KA + + + Q + K + +
Sbjct: 73 PGIGRVKSIELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLD 132
>gi|153808951|ref|ZP_01961619.1| hypothetical protein BACCAC_03252 [Bacteroides caccae ATCC 43185]
gi|149128284|gb|EDM19503.1| hypothetical protein BACCAC_03252 [Bacteroides caccae ATCC 43185]
Length = 231
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 39/127 (30%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAP 77
+R R++ ++KG AL+ E+L +++ + + + LL +
Sbjct: 12 WAPEDRPREKMIEKGAAALSDAELLAILIGSGNTEESAVELMRRLLLSCDNNLNTLAKWE 71
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ +G ++ + +R N + +T + +
Sbjct: 72 VCDYSRFKGMGPAKSITVMAALELGKRRKLQNIRERLRITCSKDIYEIFQPLMCDLAQEE 131
Query: 138 FAYCFSI 144
F
Sbjct: 132 FWVLLLN 138
>gi|58697136|ref|ZP_00372568.1| DNA repair protein RadC [Wolbachia endosymbiont of Drosophila
simulans]
gi|225630223|ref|YP_002727014.1| DNA repair protein RadC [Wolbachia sp. wRi]
gi|58536565|gb|EAL59914.1| DNA repair protein RadC [Wolbachia endosymbiont of Drosophila
simulans]
gi|225592204|gb|ACN95223.1| DNA repair protein RadC [Wolbachia sp. wRi]
Length = 224
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 53/125 (42%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR++ + +L YE+LE IL+ R D K IAK+L++ F +L VF A L
Sbjct: 7 GHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPIAKSLIENFGSLNKVFNADLE 66
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
LQ ++ + + V A R + + + L + N NF
Sbjct: 67 ALQNVDGVSNAAISAIFCVKQAFVRSAREEIKDLPIIDNWEKLLDYLRISIGSLNKENFR 126
Query: 140 YCFSI 144
+
Sbjct: 127 VIYMN 131
>gi|332170536|gb|AEE19791.1| DNA repair protein RadC [Krokinobacter diaphorus 4H-3-7-5]
Length = 237
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 52/143 (36%), Gaps = 1/143 (0%)
Query: 4 FRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
+ S + + +R R++ + KG + L+ E++ +++ + +++K +
Sbjct: 3 IKTSTDAASYISIKNWSEDDRPREKLMIKGRSVLSDAELIAILISSGSREESAVALSKRI 62
Query: 64 LKR-FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
L + L + + L + IG+ A+ + +R +K ++ +
Sbjct: 63 LSQAENNLSELGKFSVKDLMKFKGIGEAKAVTIAAALELGRRRSGGETLSRKRISSSKDA 122
Query: 123 LISVERHYPMKNANNFAYCFSIN 145
++ F F N
Sbjct: 123 YQILQPIIGELGHEEFWVLFLNN 145
>gi|118581981|ref|YP_903231.1| DNA repair protein RadC [Pelobacter propionicus DSM 2379]
gi|166218787|sp|A1AV03|Y3582_PELPD RecName: Full=UPF0758 protein Ppro_3582
gi|118504691|gb|ABL01174.1| DNA replication and repair protein RadC [Pelobacter propionicus DSM
2379]
Length = 229
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 3/129 (2%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRL--IPRKDTKSIAKALLKRFAT-LGGVFG 75
R R++ L+KG +L+ E+L LI+ K + + L+ F + L +
Sbjct: 8 WPEDERPREKMLRKGAASLSDAELLALIIRTGDTATGKSAIDLGRELISLFGSSLRELGS 67
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
A + + I +G A +K + R T +
Sbjct: 68 ADMAEITAIKGMGMAKAAGVKAAFTLASRFQGRRLENLDRFTSPRQVFDYFHYELRDCRR 127
Query: 136 NNFAYCFSI 144
F
Sbjct: 128 EYFLVLLLD 136
>gi|282916921|ref|ZP_06324679.1| DNA repair protein radC [Staphylococcus aureus subsp. aureus D139]
gi|283770726|ref|ZP_06343618.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus H19]
gi|282319408|gb|EFB49760.1| DNA repair protein radC [Staphylococcus aureus subsp. aureus D139]
gi|283460873|gb|EFC07963.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus H19]
Length = 228
Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EKPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 QVKGIGLQKAITLKAAFELGERMGRRADNNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|238028403|ref|YP_002912634.1| DNA repair protein RadC [Burkholderia glumae BGR1]
gi|237877597|gb|ACR29930.1| DNA repair protein RadC [Burkholderia glumae BGR1]
Length = 266
Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 51/127 (40%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ HH+R R+R L +G ALA +E+L L+L I T IA ++L+ F +L + A
Sbjct: 47 HNEHHDRPRERLLDRGPAALADHELLALLLGNGIAGPGTAGIAGSVLRHFGSLRALLDAS 106
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ ++ IG L + +R L S + + + +
Sbjct: 107 PGAISALSGIGPARTAVLLATTELVRRALVERASERPLVDSPGAVEDYLRLTIGTRAHEV 166
Query: 138 FAYCFSI 144
F +
Sbjct: 167 FVCLYLD 173
>gi|94268846|ref|ZP_01291300.1| DNA repair protein RadC [delta proteobacterium MLMS-1]
gi|94270555|ref|ZP_01291766.1| DNA repair protein RadC [delta proteobacterium MLMS-1]
gi|93450762|gb|EAT01820.1| DNA repair protein RadC [delta proteobacterium MLMS-1]
gi|93451446|gb|EAT02288.1| DNA repair protein RadC [delta proteobacterium MLMS-1]
Length = 243
Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPL 78
GH RLRDRFL G L ++LEL+L PR+D K +A+ LL RF + V A
Sbjct: 12 GHRQRLRDRFLSHGAQGLTDSDMLELLLTMGTPRRDCKELARNLLARFDGSFSQVLDASQ 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L+++ +G + A L V A++R L+ K +L + + +
Sbjct: 72 AELEQVKGVGPKNAFALHFVQAAARRYLQERLKGKDYLRSSREVGDYLIHALRGMSRETL 131
Query: 139 AYCFSI 144
+
Sbjct: 132 MAIYLD 137
>gi|153853159|ref|ZP_01994568.1| hypothetical protein DORLON_00553 [Dorea longicatena DSM 13814]
gi|149753945|gb|EDM63876.1| hypothetical protein DORLON_00553 [Dorea longicatena DSM 13814]
Length = 230
Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV--FGAP 77
R ++ + G ++L+ E+L ++L ++ +A+ +L G +
Sbjct: 11 PKDERPYEKCARLGADSLSDVELLAVLLRTGTQGENAVDLARRVLYHAGENGILGIHQFN 70
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L++I IG+ A+++ +S ++R+ KA++ T + + +
Sbjct: 71 VERLKKIKGIGQVKAIQISCISELAKRLSKASYEETVCFTEPKTIAQYYMEDLRHEKQEH 130
Query: 138 FAYCFSI 144
Sbjct: 131 MKLLMLN 137
>gi|255535538|ref|YP_003095909.1| DNA repair protein RadC [Flavobacteriaceae bacterium 3519-10]
gi|255341734|gb|ACU07847.1| DNA repair protein RadC [Flavobacteriaceae bacterium 3519-10]
Length = 225
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 1/129 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGVFG 75
++ +R R++FL KG+N+L+ E+L +I+ +++ +LK +
Sbjct: 4 KFLAEDDRPREKFLLKGKNSLSDAELLAIIMGSGNREDSAVELSRKILKSVDNNWHNLSR 63
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L + +G+ A+ + + R + +T + + + N
Sbjct: 64 LHIPDLMKFKGVGEAKAISIAVALEIGHRRAAQEIPDRVQITCSRDTYNVLSPYLSDLNT 123
Query: 136 NNFAYCFSI 144
F +
Sbjct: 124 EEFWAIYLN 132
>gi|58698852|ref|ZP_00373725.1| DNA repair protein RadC, truncation [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58534631|gb|EAL58757.1| DNA repair protein RadC, truncation [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 225
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 53/125 (42%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR++ + +L YE+LE IL+ R D K IAK+L++ F +L VF A L
Sbjct: 8 GHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPIAKSLIENFGSLNKVFNADLE 67
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
LQ ++ + + V A R + + + L + N NF
Sbjct: 68 ALQNVDGVSNAAISAIFCVKQAFVRSAREEIKDLPIIDNWEKLLDYLRISIGSLNKENFR 127
Query: 140 YCFSI 144
+
Sbjct: 128 VIYMN 132
>gi|320160805|ref|YP_004174029.1| DNA repair protein RadC [Anaerolinea thermophila UNI-1]
gi|319994658|dbj|BAJ63429.1| DNA repair protein RadC [Anaerolinea thermophila UNI-1]
Length = 235
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 43/122 (35%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R+R + G +L+ E+L ++L + ++ + + +L L G+ A L
Sbjct: 19 DRPRERLAELGAQSLSNAELLAILLRVGLQGENAVQLGQRILVTLGGLHGLHRASFAELS 78
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G A +LK +R+ + +T V +
Sbjct: 79 AIKGVGMAKAAQLKAAIELGRRLTMVEPQERASITCPADAAELVRYEMSALLQEHLRVIL 138
Query: 143 SI 144
Sbjct: 139 LD 140
>gi|296533048|ref|ZP_06895694.1| DNA repair protein RadC [Roseomonas cervicalis ATCC 49957]
gi|296266634|gb|EFH12613.1| DNA repair protein RadC [Roseomonas cervicalis ATCC 49957]
Length = 252
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 63/125 (50%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH R+R R LQ G +ALA +E++E++LF +PR+DTK +A+ALL RF + AP
Sbjct: 35 GHRARMRARLLQAGPDALADHELIEMLLFLALPRRDTKPVARALLARFGSFANALAAPAT 94
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L+++ +G+ LK A+ R+++A + L + + + F
Sbjct: 95 ELRQVEGLGEAGIAALKTAQAAALRLMRAEVMDQPVLNNWEKLTGYLNAALARERVEQFR 154
Query: 140 YCFSI 144
F
Sbjct: 155 ILFLD 159
>gi|254444140|ref|ZP_05057616.1| DNA repair protein RadC [Verrucomicrobiae bacterium DG1235]
gi|198258448|gb|EDY82756.1| DNA repair protein RadC [Verrucomicrobiae bacterium DG1235]
Length = 239
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R ++R +G +L+ E+L +IL ++ S+A +L+ +L G+ +
Sbjct: 18 ERPQERLEAQGPQSLSDTELLAMILRSGSKGRNVLSVASEILQESGSLNGLLKWSDAEFR 77
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I IGK AL+L + +R+ + + L + R + F
Sbjct: 78 AIKGIGKVKALQLVTIVEICRRVRERSPVSAPILDSPDLVFDFMRRDTHGLDVEKFWTLS 137
Query: 143 SI 144
Sbjct: 138 LN 139
>gi|254498591|ref|ZP_05111311.1| DNA repair protein RadC [Legionella drancourtii LLAP12]
gi|254352182|gb|EET10997.1| DNA repair protein RadC [Legionella drancourtii LLAP12]
Length = 227
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 49/121 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
LR++ L G L+ E+L + + +K +A LLK L V A H +++
Sbjct: 12 LREKLLTNGVQNLSDTELLAIFISCGSGKKSCVQLAADLLKHLGDLRAVLNADQHNFKQV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +G ++L+ V +R + +T + +++ + FA F
Sbjct: 72 HGLGTVRYVQLQAVKEICRRSDFIQLQKETQITNSKQTYAYLKKRLRDRKNETFAALFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|257413989|ref|ZP_04744897.2| DNA repair protein RadC [Roseburia intestinalis L1-82]
gi|257201600|gb|EEU99884.1| DNA repair protein RadC [Roseburia intestinalis L1-82]
gi|291536173|emb|CBL09285.1| DNA replication and repair protein RadC [Roseburia intestinalis
M50/1]
gi|291538964|emb|CBL12075.1| DNA replication and repair protein RadC [Roseburia intestinalis
XB6B4]
Length = 243
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-RFATLGGVFGAPLHLL 81
+ ++FL G L+ E+L +I+ + +A+ LL L ++ P +
Sbjct: 26 EKPYEKFLTYGPEYLSDAELLAVIIRSGTSGLKSVEVAQNLLNDGHRNLLNLYDIPFEKM 85
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
Q+I IG A++LK ++ S+RI + + +T + H +N + C
Sbjct: 86 QKIRGIGPIKAIQLKCIAELSKRIAQTKSAPNVCMTNPRTIADYYMEHLRHENKEHLIVC 145
Query: 142 FSIN 145
N
Sbjct: 146 MFDN 149
>gi|288925176|ref|ZP_06419111.1| DNA repair protein RadC [Prevotella buccae D17]
gi|315607385|ref|ZP_07882384.1| DNA repair protein RadC [Prevotella buccae ATCC 33574]
gi|288337941|gb|EFC76292.1| DNA repair protein RadC [Prevotella buccae D17]
gi|315250942|gb|EFU30932.1| DNA repair protein RadC [Prevotella buccae ATCC 33574]
Length = 255
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 43/127 (33%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAP 77
+R R++ + G +AL+ E+L +++ P++ + K ++ +
Sbjct: 36 WAEEDRPREKLERLGPSALSNAELLAILIGSGSPKESAVDLMKKVMHDCNNNLNTLGKLS 95
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ LQ+ N +G A+ + +R + + L+ + +
Sbjct: 96 ITDLQQYNGVGPAKAITILAACELGKRRQASAVEERPELSSAAAIYNYMHPRMQDLDVEE 155
Query: 138 FAYCFSI 144
Sbjct: 156 AWVLLMN 162
>gi|33592363|ref|NP_880007.1| DNA repair protein RadC [Bordetella pertussis Tohama I]
gi|39931828|sp|Q7VYS4|Y1235_BORPE RecName: Full=UPF0758 protein BP1235
gi|33572008|emb|CAE41531.1| DNA repair protein [Bordetella pertussis Tohama I]
Length = 225
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L+ G L+ E+L L L + + + LL+RF L G+ G LQ +
Sbjct: 13 PRERLLRHGAATLSDPELLALALRTGVAGCNAVQLGHDLLRRFGGLRGLLGTSPAELQVV 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G A L V ++R L+ + + L + + + +
Sbjct: 73 PGLGTAKACVLAAVLELARRTLEEDLVRQDALANPDLVRRYCQAALGHRKVEHCIALYLD 132
>gi|55821449|ref|YP_139891.1| DNA repair protein RadC [Streptococcus thermophilus LMG 18311]
gi|73913744|sp|Q5M3F9|Y1465_STRT2 RecName: Full=UPF0758 protein stu1465
gi|55737434|gb|AAV61076.1| DNA repair protein [Streptococcus thermophilus LMG 18311]
gi|312278780|gb|ADQ63437.1| DNA repair protein RadC [Streptococcus thermophilus ND03]
Length = 228
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R LQKG L+ E+L ++L + S+A +LK +L + L+ LQEI
Sbjct: 13 PRERLLQKGAEVLSDQELLAIVLRTGTRSESVLSMANRILKGMTSLADLSRLSLNELQEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ ++ELK + ++RI KA + + + Q + K + +
Sbjct: 73 PGIGRVKSIELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLD 132
>gi|33596472|ref|NP_884115.1| DNA repair protein RadC [Bordetella parapertussis 12822]
gi|39931840|sp|Q7W9B6|Y1850_BORPA RecName: Full=UPF0758 protein BPP1850
gi|33566241|emb|CAE37151.1| DNA repair protein [Bordetella parapertussis]
Length = 225
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L+ G L+ E+L L L + + + LL+RF L G+ G LQ +
Sbjct: 13 PRERLLRHGAATLSDPELLALALRTGVAGCNAVQLGHDLLRRFGGLRGLLGTSPAELQVV 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G A L V ++R L+ + + L + + + +
Sbjct: 73 PGLGTAKACVLAAVLELARRTLEEDLVRQDALANPDLVRRYCQAALGHRKVEHCIALYLD 132
>gi|313206016|ref|YP_004045193.1| DNA repair protein radc [Riemerella anatipestifer DSM 15868]
gi|312445332|gb|ADQ81687.1| DNA repair protein RadC [Riemerella anatipestifer DSM 15868]
gi|315022329|gb|EFT35357.1| DNA repair protein RadC [Riemerella anatipestifer RA-YM]
gi|325336543|gb|ADZ12817.1| DNA repair protein [Riemerella anatipestifer RA-GD]
Length = 225
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 1/129 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFG 75
+ +R R++FL KG +AL+ E+L +I+ + +A+ +L+ + +
Sbjct: 4 KNLSEDDRPREKFLTKGRDALSDAELLAIIMGSGNREESAVDLARRILQTYGHNWNALSE 63
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L + +G+ A+ + +R + +T + +
Sbjct: 64 VSVAALMKFRGVGEAKAISIATALEIGRRRAVQEQPKRLQITQSSDIFEMMAPLLSDLHN 123
Query: 136 NNFAYCFSI 144
F F
Sbjct: 124 EEFWVIFLN 132
>gi|322807326|emb|CBZ04900.1| DNA repair protein RadC [Clostridium botulinum H04402 065]
Length = 228
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 2/139 (1%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ + + + R ++R ++ G L+ E+L +IL ++ +A +L+K L
Sbjct: 2 DNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGGL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+F + L +I IG A+++ +S S+R + + V
Sbjct: 62 DQLFNQSIEELTKIKGIGVTKAVQILALSELSKRFKTYKSGNEYKINTPLDVSNLVMEDM 121
Query: 131 PMKNANNFAYCFSI--NII 147
NI+
Sbjct: 122 KYLKQEKLKILILNTKNIV 140
>gi|228477172|ref|ZP_04061810.1| DNA repair protein RadC [Streptococcus salivarius SK126]
gi|228251191|gb|EEK10362.1| DNA repair protein RadC [Streptococcus salivarius SK126]
Length = 228
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R LQKG L+ E+L ++L + S+A +LK +L + L+ LQEI
Sbjct: 13 PRERLLQKGAEVLSDQELLAIVLRTGTKSESVLSMANRILKGMTSLADLSRLSLNELQEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ ++ELK + ++RI KA + + + Q + K + +
Sbjct: 73 PGIGRVKSIELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLD 132
>gi|168179493|ref|ZP_02614157.1| DNA repair protein, RadC family [Clostridium botulinum NCTC 2916]
gi|170755607|ref|YP_001782636.1| DNA repair protein RadC [Clostridium botulinum B1 str. Okra]
gi|226950427|ref|YP_002805518.1| DNA repair protein RadC [Clostridium botulinum A2 str. Kyoto]
gi|229485548|sp|B1IM02|Y1541_CLOBK RecName: Full=UPF0758 protein CLD_1541
gi|254764432|sp|C1FVY2|Y3399_CLOBJ RecName: Full=UPF0758 protein CLM_3399
gi|169120819|gb|ACA44655.1| DNA repair protein, RadC family [Clostridium botulinum B1 str.
Okra]
gi|182669777|gb|EDT81753.1| DNA repair protein, RadC family [Clostridium botulinum NCTC 2916]
gi|226842668|gb|ACO85334.1| DNA repair protein, RadC family [Clostridium botulinum A2 str.
Kyoto]
Length = 228
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 2/139 (1%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ + + + R ++R ++ G L+ E+L +IL ++ +A +L+K L
Sbjct: 2 DNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGGL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+F + L +I IG A+++ +S S+R + + V
Sbjct: 62 DQLFNQSIEELTKIKGIGVTKAVQILALSELSKRFKTYKSGNEYKINTPLDVSNLVMEDM 121
Query: 131 PMKNANNFAYCFSI--NII 147
NI+
Sbjct: 122 KYLKQEKLKILILNTKNIV 140
>gi|153940602|ref|YP_001392279.1| DNA repair protein RadC [Clostridium botulinum F str. Langeland]
gi|166218778|sp|A7GHL9|Y3057_CLOBL RecName: Full=UPF0758 protein CLI_3057
gi|152936498|gb|ABS41996.1| DNA repair protein, RadC family [Clostridium botulinum F str.
Langeland]
gi|295320272|gb|ADG00650.1| DNA repair protein, RadC family [Clostridium botulinum F str.
230613]
Length = 228
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 2/139 (1%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ + + + R ++R ++ G L+ E+L +IL ++ +A +L+K L
Sbjct: 2 DNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGGL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+F + L +I IG A+++ +S S+R + + V
Sbjct: 62 DQLFNQSIEELTKIKGIGVTKAVQILALSELSKRFKTYKSGNEYKINTPLDVSNLVMEDM 121
Query: 131 PMKNANNFAYCFSI--NII 147
NI+
Sbjct: 122 KYLKQEKLKILILNTKNIV 140
>gi|150015380|ref|YP_001307634.1| DNA repair protein RadC [Clostridium beijerinckii NCIMB 8052]
gi|189029392|sp|A6LQP8|Y490_CLOB8 RecName: Full=UPF0758 protein Cbei_0490
gi|149901845|gb|ABR32678.1| DNA repair protein RadC [Clostridium beijerinckii NCIMB 8052]
Length = 229
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 3/140 (2%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ I + R +++ L G +L+ E+L +I+ ++ + LL L
Sbjct: 2 ESSLKIKDIPQNERPKEKLLTYGAESLSNSELLAIIIRTGTQGENVLQLCSRLLSELEGL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERH 129
G+ A + I I + A ++ ++ +R +T + +
Sbjct: 62 NGILDASFDDIISIKGIKQGKASQILALAELFKRFRTLKAINNDIKITSPKDLASLLMGE 121
Query: 130 YPMKNANNFAYCFSI--NII 147
N NI+
Sbjct: 122 MNELNQEVLKVVLLNTKNIV 141
>gi|269137424|ref|YP_003294124.1| DNA repair protein [Edwardsiella tarda EIB202]
gi|267983084|gb|ACY82913.1| DNA repair protein [Edwardsiella tarda EIB202]
gi|304557498|gb|ADM40162.1| DNA repair protein RadC [Edwardsiella tarda FL6-60]
Length = 228
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 51/121 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ E+L L L +P +A+ LL+RF +L GV A +
Sbjct: 16 PREKLLALGAAALSDRELLALFLRTGLPGVHVIQLAERLLQRFGSLQGVLRADVDTFCAS 75
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ V S+R+L+ + +T + ++ + F F
Sbjct: 76 QGLGIAKFAQLQAVIELSRRVLRHRIGEESAITSPDLTALYLQNLFVSLEREIFVVLFLD 135
Query: 145 N 145
N
Sbjct: 136 N 136
>gi|33602234|ref|NP_889794.1| DNA repair protein RadC [Bordetella bronchiseptica RB50]
gi|39931851|sp|Q7WHF0|Y3258_BORBR RecName: Full=UPF0758 protein BB3258
gi|33576673|emb|CAE33750.1| DNA repair protein [Bordetella bronchiseptica RB50]
Length = 225
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L+ G L+ E+L L L + + + LL+RF L G+ G LQ +
Sbjct: 13 PRERLLRHGAATLSDPELLALALRTGVAGCNAVQLGHDLLRRFGGLRGLLGTSPAELQVV 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G A L V ++R L+ + + L + + + +
Sbjct: 73 PGLGTAKACVLAAVLELARRTLEEDLVRQDALANPDLVRRYCQAALGHRKVEHCIALYLD 132
>gi|238918036|ref|YP_002931550.1| DNA repair protein RadC [Edwardsiella ictaluri 93-146]
gi|238867604|gb|ACR67315.1| DNA repair protein RadC [Edwardsiella ictaluri 93-146]
Length = 228
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 50/121 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ E+L L L +P +A+ LL RF +L GV A +
Sbjct: 16 PREKLLALGAAALSDRELLALFLRTGLPGVHVIQLAERLLLRFGSLQGVLRADVDTFCAS 75
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ V S+R+L+ + +T + ++ + F F
Sbjct: 76 QGLGIAKFAQLQAVIELSRRVLRHRIGEESAITSPDLTALYLQNLFVSLEREIFVVLFLD 135
Query: 145 N 145
N
Sbjct: 136 N 136
>gi|124004623|ref|ZP_01689467.1| DNA repair protein RadC [Microscilla marina ATCC 23134]
gi|123989746|gb|EAY29275.1| DNA repair protein RadC [Microscilla marina ATCC 23134]
Length = 266
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 50/132 (37%), Gaps = 3/132 (2%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAP 77
+R R++ L KG+++L+ E++ +++ +AK +L +
Sbjct: 47 WAEEDRPREKLLLKGKHSLSDAELIAILIGSGTVSVSAVDLAKQILNSVGNNLNDLAKLS 106
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L++ IG+ A+ + +R ++ S K +T + + H
Sbjct: 107 IKDLKKFKGIGEAKAISIISALELGRRRKESEPSRKPRITSSKNVYDLIAPHLMDLGHEE 166
Query: 138 FAYCFSI--NII 147
F N++
Sbjct: 167 FWAVMLNKSNVV 178
>gi|116628169|ref|YP_820788.1| DNA repair protein RadC [Streptococcus thermophilus LMD-9]
gi|122267235|sp|Q03JN0|Y1430_STRTD RecName: Full=UPF0758 protein STER_1430
gi|116101446|gb|ABJ66592.1| DNA repair protein [Streptococcus thermophilus LMD-9]
Length = 228
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R LQKG L+ E+L ++L + S+A +LK +L + L+ LQ+I
Sbjct: 13 PRERLLQKGAEVLSDQELLAIVLRTGTRSESVLSMANRILKGMTSLADLSRLSLNELQKI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ ++ELK + ++RI KA + + + Q + K + +
Sbjct: 73 PGIGRVKSIELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLD 132
>gi|153208645|ref|ZP_01946897.1| DNA repair protein RadC [Coxiella burnetii 'MSU Goat Q177']
gi|154707167|ref|YP_001425121.1| DNA repair protein [Coxiella burnetii Dugway 5J108-111]
gi|165919790|ref|ZP_02219533.1| DNA repair protein RadC [Coxiella burnetii RSA 334]
gi|212218127|ref|YP_002304914.1| DNA repair protein [Coxiella burnetii CbuK_Q154]
gi|189029394|sp|A9KGS6|Y1789_COXBN RecName: Full=UPF0758 protein CBUD_1789
gi|238054487|sp|B6J5S7|Y488_COXB1 RecName: Full=UPF0758 protein CbuK_0488
gi|120575831|gb|EAX32455.1| DNA repair protein RadC [Coxiella burnetii 'MSU Goat Q177']
gi|154356453|gb|ABS77915.1| DNA repair protein [Coxiella burnetii Dugway 5J108-111]
gi|165916873|gb|EDR35477.1| DNA repair protein RadC [Coxiella burnetii RSA 334]
gi|212012389|gb|ACJ19769.1| DNA repair protein [Coxiella burnetii CbuK_Q154]
Length = 224
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 51/123 (41%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L++ + L+ E++ +I+ + + + +A+ L L + A H L
Sbjct: 10 ERPREKLLREDAHILSDAELIAVIIQKGVRGCNAVELAREWLNHLGGLASLLNADFHRLS 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +GK V +LK + +R L+ + K L Q + + FA F
Sbjct: 70 GLRGLGKAVYCKLKAAAELQRRYLRQSLERKGQLGCTQDAQQLLYAQLRHHESEVFACLF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|103486559|ref|YP_616120.1| DNA repair protein RadC [Sphingopyxis alaskensis RB2256]
gi|98976636|gb|ABF52787.1| DNA repair protein RadC [Sphingopyxis alaskensis RB2256]
Length = 272
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
D++GH RLR R L+ + LA YE++E +L IPR+DTK +AKALL+ F +L
Sbjct: 48 DSETPDHVGHRARLRSRLLE-DADGLADYELVEYLLALAIPRRDTKPLAKALLREFGSLA 106
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
+ A L+ ++ +G LK+V +S R+LK + K L+ L +
Sbjct: 107 QLVSADPESLRRVDGLGDTGIAALKIVQASSLRLLKGEFRDKPLLSSWDALLDWLRADMG 166
Query: 132 MKNANNFAYCFSI 144
+ +
Sbjct: 167 PIDVERVRILYLN 179
>gi|258424078|ref|ZP_05686960.1| DNA repair protein RadC [Staphylococcus aureus A9635]
gi|257845699|gb|EEV69731.1| DNA repair protein RadC [Staphylococcus aureus A9635]
Length = 228
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 QVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|161509879|ref|YP_001575538.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|160368688|gb|ABX29659.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
Length = 223
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 5 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 64
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 65 KVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 124
Query: 143 SI--NII 147
N++
Sbjct: 125 LNSKNVV 131
>gi|187933370|ref|YP_001884766.1| DNA repair protein RadC [Clostridium botulinum B str. Eklund 17B]
gi|238691627|sp|B2TK55|Y562_CLOBB RecName: Full=UPF0758 protein CLL_A0562
gi|187721523|gb|ACD22744.1| DNA repair protein RadC [Clostridium botulinum B str. Eklund 17B]
Length = 229
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 3/140 (2%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ I R +++ L G + L E+L +IL ++ ++ LL +F L
Sbjct: 2 ENSLKIKDIPKKERPKEKLLSYGADTLNNSELLAIILRTGTKGENVLQLSNRLLSKFQGL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKAN-WSIKKFLTPGQPCLISVERH 129
GV A L + I I + A ++ ++ +R + + +
Sbjct: 62 DGVLEASLDDITSIKGIKEGKASQILALAELFKRFRTFKSADRDIKIMSPNDLAMLINGE 121
Query: 130 YPMKNANNFAYCFSI--NII 147
+ F NI+
Sbjct: 122 MSLLKQEILKVIFLNTKNIV 141
>gi|94264365|ref|ZP_01288156.1| DNA repair protein RadC [delta proteobacterium MLMS-1]
gi|93455194|gb|EAT05410.1| DNA repair protein RadC [delta proteobacterium MLMS-1]
Length = 243
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPL 78
GH RLRDRFL G L ++LEL+L PR+D K +A+ LL RF + V A
Sbjct: 12 GHRQRLRDRFLSHGAQGLTDSDMLELLLTMGTPRRDCKELARNLLARFDGSFSQVLDASQ 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L+++ +G + L V A++R L+ K +L + + +
Sbjct: 72 AELEQVKGVGPKNTFALHFVQAAARRYLQERLKGKDYLRSSREVGDYLIHALRGMSRETL 131
Query: 139 AYCFSI 144
+
Sbjct: 132 MAIYLD 137
>gi|310658699|ref|YP_003936420.1| DNA repair protein RadC-like protein [Clostridium sticklandii DSM
519]
gi|308825477|emb|CBH21515.1| DNA repair protein radC homolog [Clostridium sticklandii]
Length = 228
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+ L+KGE L+ E+L +++ K ++A+ +++ + + + L
Sbjct: 14 ERPRETLLKKGETYLSDSELLAILINNGTRDKSAITLAREIIETSDGIRNLSNITVEELS 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I IG A + +R+ A+ K ++ Q K F
Sbjct: 74 KIKGIGLAKACRIISALELGRRVSVASEMQKFKISSPQDIGNVYMEELRYKKKEIFRVVL 133
Query: 143 SI--NII 147
N+I
Sbjct: 134 LNTKNVI 140
>gi|329767471|ref|ZP_08258995.1| hypothetical protein HMPREF0428_00692 [Gemella haemolysans M341]
gi|328835919|gb|EGF85635.1| hypothetical protein HMPREF0428_00692 [Gemella haemolysans M341]
Length = 257
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++F + G AL+ EIL ++L ++ ++ +LK + + L L
Sbjct: 13 DRPREKFKKLGALALSDKEILAILLRTGTKNQNVIELSDMILKDMGGITKLRDTTLTELM 72
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ IG+ A+ + ++RI N K Q ++ F
Sbjct: 73 KHKGIGQEKAIHILANIEFARRIYATNVLDVKC-DSPQSIANYLKSSLENLTQEVFIVL 130
>gi|170758657|ref|YP_001788315.1| DNA repair protein RadC [Clostridium botulinum A3 str. Loch Maree]
gi|229485549|sp|B1KZT0|Y2387_CLOBM RecName: Full=UPF0758 protein CLK_2387
gi|169405646|gb|ACA54057.1| DNA repair protein, RadC family [Clostridium botulinum A3 str. Loch
Maree]
Length = 228
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 2/139 (1%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ + + + R ++R ++ G L+ E+L +IL ++ +A +L+K L
Sbjct: 2 DNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGGL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+F + L +I IG A+++ +S S+R + ++ V
Sbjct: 62 DQLFNQSIEELTKIKGIGVTKAVQILALSELSKRFKTYKSGNEYKISTPLDVSNLVMEDM 121
Query: 131 PMKNANNFAYCFSI--NII 147
NI+
Sbjct: 122 KYLKQEKLKILILNTKNIV 140
>gi|148380954|ref|YP_001255495.1| DNA repair protein, RadC family [Clostridium botulinum A str. ATCC
3502]
gi|153933543|ref|YP_001385323.1| DNA repair protein RadC [Clostridium botulinum A str. ATCC 19397]
gi|153937584|ref|YP_001388731.1| DNA repair protein RadC [Clostridium botulinum A str. Hall]
gi|168181688|ref|ZP_02616352.1| DNA repair protein, RadC family [Clostridium botulinum Bf]
gi|237796455|ref|YP_002864007.1| DNA repair protein, RadC family [Clostridium botulinum Ba4 str.
657]
gi|166218776|sp|A7FXW3|Y3028_CLOB1 RecName: Full=UPF0758 protein CLB_3028
gi|166218777|sp|A5I683|Y3003_CLOBH RecName: Full=UPF0758 protein CBO3003/CLC_2900
gi|259551858|sp|C3L3L0|Y3261_CLOB6 RecName: Full=UPF0758 protein CLJ_B3261
gi|148290438|emb|CAL84565.1| DNA repair protein [Clostridium botulinum A str. ATCC 3502]
gi|152929587|gb|ABS35087.1| DNA repair protein, RadC family [Clostridium botulinum A str. ATCC
19397]
gi|152933498|gb|ABS38997.1| DNA repair protein, RadC family [Clostridium botulinum A str. Hall]
gi|182675184|gb|EDT87145.1| DNA repair protein, RadC family [Clostridium botulinum Bf]
gi|229264193|gb|ACQ55226.1| DNA repair protein, RadC family [Clostridium botulinum Ba4 str.
657]
Length = 228
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 2/139 (1%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ + + + R ++R ++ G L+ E+L +IL ++ +A +L+K L
Sbjct: 2 DNNFKIKDLPKNERPQERLIRYGAEVLSNSELLAVILRTGTKNQNIMMLASSLIKETGGL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+F + L +I IG A+++ +S S+R + ++ V
Sbjct: 62 DQLFNQSIEELTKIKGIGVTKAVQILALSELSKRFKTYKSGNEYKISTPLDVSNLVMEDM 121
Query: 131 PMKNANNFAYCFSI--NII 147
NI+
Sbjct: 122 KYLKQEKLKILILNTKNIV 140
>gi|329733266|gb|EGG69603.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus 21193]
Length = 228
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L G+ + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNGLKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 KVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|148266148|ref|YP_001232854.1| DNA repair protein RadC [Geobacter uraniireducens Rf4]
gi|189029395|sp|A5G913|Y4138_GEOUR RecName: Full=UPF0758 protein Gura_4138
gi|146399648|gb|ABQ28281.1| DNA replication and repair protein RadC [Geobacter uraniireducens
Rf4]
Length = 228
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 2/130 (1%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRL--IPRKDTKSIAKALLKRFATLGGVF 74
R R++ L++G AL+ E+L LI+ + I + +L+ F L +
Sbjct: 6 KQWPEDERPREKLLKRGAKALSDAELLALIIGTGDSSSGRSALDIGREMLQDFGGLRNLA 65
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A + I G A +K + R + + T +
Sbjct: 66 HATASEICRIKGAGPAKAACIKAALELANRYGARRFESLERFTSPSQVFEHFHHEFRDHR 125
Query: 135 ANNFAYCFSI 144
F
Sbjct: 126 KEYFLTLLLD 135
>gi|317504084|ref|ZP_07962086.1| DNA repair protein RadC [Prevotella salivae DSM 15606]
gi|315664756|gb|EFV04421.1| DNA repair protein RadC [Prevotella salivae DSM 15606]
Length = 234
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 13/127 (10%), Positives = 40/127 (31%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAP 77
+R R++ + G +AL+ E+L +++ ++ + K +L +
Sbjct: 15 WAKEDRPREKLERLGPSALSNAELLGILIGSGTQKESAVDLMKRILIDCNNNLNTLGKLS 74
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L++ +G A+ + +R + + + + +
Sbjct: 75 IRELEQYKGVGPAKAISILAACELGKRRAMEKAQERTSIDSSKAIYEYLHPRMQDLDVEE 134
Query: 138 FAYCFSI 144
Sbjct: 135 AWIMLLN 141
>gi|323442950|gb|EGB00573.1| DNA repair protein RadC [Staphylococcus aureus O46]
Length = 223
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 5 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 64
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 65 QVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 124
Query: 143 SI--NII 147
N++
Sbjct: 125 LNSKNVV 131
>gi|21283333|ref|NP_646421.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus MW2]
gi|49486487|ref|YP_043708.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57650533|ref|YP_186546.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus COL]
gi|151221767|ref|YP_001332589.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus str.
Newman]
gi|253317195|ref|ZP_04840408.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|258443688|ref|ZP_05692027.1| DNA repair protein RadC [Staphylococcus aureus A8115]
gi|282893157|ref|ZP_06301391.1| DNA repair protein radC [Staphylococcus aureus A8117]
gi|282920202|ref|ZP_06327927.1| DNA repair protein radC [Staphylococcus aureus A9765]
gi|284024710|ref|ZP_06379108.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus 132]
gi|294848683|ref|ZP_06789429.1| DNA repair protein radC [Staphylococcus aureus A9754]
gi|297207625|ref|ZP_06924060.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300911707|ref|ZP_07129151.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus TCH70]
gi|25009019|sp|Q8NW77|Y1604_STAAW RecName: Full=UPF0758 protein MW1604
gi|54036222|sp|Q6G8R5|Y1589_STAAS RecName: Full=UPF0758 protein SAS1589
gi|81694333|sp|Q5HFB1|Y1707_STAAC RecName: Full=UPF0758 protein SACOL1707
gi|229485562|sp|A6QHJ5|Y1555_STAAE RecName: Full=UPF0758 protein NWMN_1555
gi|21204773|dbj|BAB95469.1| MW1604 [Staphylococcus aureus subsp. aureus MW2]
gi|49244930|emb|CAG43391.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284719|gb|AAW36813.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus COL]
gi|150374567|dbj|BAF67827.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus str.
Newman]
gi|257851094|gb|EEV75037.1| DNA repair protein RadC [Staphylococcus aureus A8115]
gi|282594550|gb|EFB99535.1| DNA repair protein radC [Staphylococcus aureus A9765]
gi|282764475|gb|EFC04601.1| DNA repair protein radC [Staphylococcus aureus A8117]
gi|294824709|gb|EFG41132.1| DNA repair protein radC [Staphylococcus aureus A9754]
gi|296887642|gb|EFH26540.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300887128|gb|EFK82329.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus TCH70]
gi|312830039|emb|CBX34881.1| DNA repair protein RadC family protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315198645|gb|EFU28973.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus CGS01]
gi|320140460|gb|EFW32314.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320143999|gb|EFW35768.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
MRSA177]
gi|329728423|gb|EGG64860.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus 21189]
Length = 228
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 KVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|253732311|ref|ZP_04866476.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253734554|ref|ZP_04868719.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
TCH130]
gi|257425777|ref|ZP_05602201.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
55/2053]
gi|257433760|ref|ZP_05610118.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus E1410]
gi|257436676|ref|ZP_05612720.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus M876]
gi|282914458|ref|ZP_06322244.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus M899]
gi|282919427|ref|ZP_06327162.1| DNA repair protein radC [Staphylococcus aureus subsp. aureus C427]
gi|282924804|ref|ZP_06332470.1| DNA repair protein radC [Staphylococcus aureus subsp. aureus C101]
gi|293510550|ref|ZP_06669255.1| DNA repair protein radC [Staphylococcus aureus subsp. aureus M809]
gi|253723949|gb|EES92678.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253727495|gb|EES96224.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271471|gb|EEV03617.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
55/2053]
gi|257281853|gb|EEV11990.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus E1410]
gi|257284027|gb|EEV14150.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus M876]
gi|282313170|gb|EFB43566.1| DNA repair protein radC [Staphylococcus aureus subsp. aureus C101]
gi|282317237|gb|EFB47611.1| DNA repair protein radC [Staphylococcus aureus subsp. aureus C427]
gi|282321639|gb|EFB51964.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus M899]
gi|283470928|emb|CAQ50139.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus ST398]
gi|291466441|gb|EFF08962.1| DNA repair protein radC [Staphylococcus aureus subsp. aureus M809]
gi|312437880|gb|ADQ76951.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus TCH60]
Length = 228
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 QVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|258438230|ref|ZP_05689514.1| DNA repair protein RadC [Staphylococcus aureus A9299]
gi|257848274|gb|EEV72265.1| DNA repair protein RadC [Staphylococcus aureus A9299]
Length = 185
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 KVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|87161721|ref|YP_494303.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195464|ref|YP_500268.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|109940132|sp|P31337|Y1763_STAA8 RecName: Full=UPF0758 protein SAOUHSC_01763; AltName: Full=25 kDa
protein
gi|123485497|sp|Q2FG75|Y1608_STAA3 RecName: Full=UPF0758 protein SAUSA300_1608
gi|87127695|gb|ABD22209.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203022|gb|ABD30832.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
Length = 218
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L ++
Sbjct: 2 PRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKV 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG + A+ LK +R+ + + + +T + +F
Sbjct: 62 KGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLN 121
Query: 145 --NII 147
N++
Sbjct: 122 SKNVV 126
>gi|187778415|ref|ZP_02994888.1| hypothetical protein CLOSPO_02009 [Clostridium sporogenes ATCC
15579]
gi|187772040|gb|EDU35842.1| hypothetical protein CLOSPO_02009 [Clostridium sporogenes ATCC
15579]
Length = 228
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 2/139 (1%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ + + + R ++R ++ G L+ E+L +IL ++ +A +L+K L
Sbjct: 2 DNNFKIKDLPKNERPQERLIRYGSETLSNSELLAVILRTGTKNQNIMMLANSLIKETGGL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+F + L +I IG A+++ +S S+R + + V
Sbjct: 62 DQLFNQSIEELTKIKGIGVTKAVQILALSELSKRFKTYKSGNEYKINTPLDVSNLVMEDM 121
Query: 131 PMKNANNFAYCFSI--NII 147
NI+
Sbjct: 122 KYLKQEKLKILILNTKNIV 140
>gi|15924650|ref|NP_372184.1| DNA repair protein RadC-like protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|15927239|ref|NP_374772.1| hypothetical protein SA1485 [Staphylococcus aureus subsp. aureus
N315]
gi|148268141|ref|YP_001247084.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus JH9]
gi|150394208|ref|YP_001316883.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus JH1]
gi|156979978|ref|YP_001442237.1| DNA repair protein RadC-like protein [Staphylococcus aureus subsp.
aureus Mu3]
gi|255006446|ref|ZP_05145047.2| DNA repair protein RadC-like protein [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|295405972|ref|ZP_06815780.1| DNA repair protein RadC [Staphylococcus aureus A8819]
gi|297245102|ref|ZP_06928979.1| DNA repair protein RadC [Staphylococcus aureus A8796]
gi|13701457|dbj|BAB42751.1| truncated(radC) [Staphylococcus aureus subsp. aureus N315]
gi|14247432|dbj|BAB57822.1| DNA repair protein RadC homolog [Staphylococcus aureus subsp.
aureus Mu50]
gi|147741210|gb|ABQ49508.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus JH9]
gi|149946660|gb|ABR52596.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus JH1]
gi|156722113|dbj|BAF78530.1| DNA repair protein RadC homolog [Staphylococcus aureus subsp.
aureus Mu3]
gi|285817343|gb|ADC37830.1| truncated DNA repair protein RadC [Staphylococcus aureus 04-02981]
gi|294968969|gb|EFG44990.1| DNA repair protein RadC [Staphylococcus aureus A8819]
gi|297178182|gb|EFH37430.1| DNA repair protein RadC [Staphylococcus aureus A8796]
gi|302751487|gb|ADL65664.1| putative DNA repair protein, RadC [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|329314334|gb|AEB88747.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus T0131]
gi|329727700|gb|EGG64156.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus 21172]
Length = 184
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 KVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|257428443|ref|ZP_05604841.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
65-1322]
gi|293503536|ref|ZP_06667383.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
58-424]
gi|257275284|gb|EEV06771.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
65-1322]
gi|291095202|gb|EFE25467.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
58-424]
Length = 184
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 QVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|78042658|ref|YP_359204.1| DNA repair protein RadC [Carboxydothermus hydrogenoformans Z-2901]
gi|123577004|sp|Q3AF80|Y341_CARHZ RecName: Full=UPF0758 protein CHY_0341
gi|77994773|gb|ABB13672.1| DNA repair protein RadC [Carboxydothermus hydrogenoformans Z-2901]
Length = 226
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 45/131 (34%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
+ + R R+R L+ G +L E+L ++L P+++ +A LL F L G+
Sbjct: 3 EKIKNLPEELRPRERLLRHGPESLNPAELLAVLLGSGTPQENALELALRLLTTFGGLKGL 62
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
L+ IG+ A +L ++R + K + K
Sbjct: 63 IEVHPEQLKSFKGIGQAKAAKLLAALELARRYYELTGENKLNFLNPDDVYNYLRYKIGHK 122
Query: 134 NANNFAYCFSI 144
+
Sbjct: 123 KQEQVVVLYLN 133
>gi|293537093|ref|ZP_06671773.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus M1015]
gi|290919938|gb|EFD97006.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus M1015]
Length = 228
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 QVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|158320795|ref|YP_001513302.1| DNA repair protein RadC [Alkaliphilus oremlandii OhILAs]
gi|172048007|sp|A8MHM4|Y1766_ALKOO RecName: Full=UPF0758 protein Clos_1766
gi|158140994|gb|ABW19306.1| DNA repair protein RadC [Alkaliphilus oremlandii OhILAs]
Length = 232
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 1/122 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-RFATLGGVFGAPLHLL 81
R R++ L G +L+ E+L +IL + +A+++L L G+ + L
Sbjct: 17 ERPREKLLSFGSQSLSNAELLAIILSTGTKDRTAIDLARSILNTSTEGLRGLKDCTIEEL 76
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
++ +G A ++ +RI + + N F
Sbjct: 77 SQVKGVGLAKASQIIAAVELGKRISLTTKVNNYKIKGPDDVSNLLMEEMRYLNKEIFNIL 136
Query: 142 FS 143
Sbjct: 137 LL 138
>gi|282879368|ref|ZP_06288111.1| putative DNA repair protein RadC [Prevotella buccalis ATCC 35310]
gi|281298481|gb|EFA90907.1| putative DNA repair protein RadC [Prevotella buccalis ATCC 35310]
Length = 249
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/145 (13%), Positives = 47/145 (32%), Gaps = 2/145 (1%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
L+D P++ + + +R R++ + G ++L+ E+L +++ + +
Sbjct: 13 LQDENRQDVPTRLAINHWS-EDDRPREKLERLGASSLSNAELLAILIGSGSTDESAVDLM 71
Query: 61 KALLKRFATL-GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPG 119
K LL + +H L IG A+ + ++R ++ L
Sbjct: 72 KRLLSSCNNNLNSLGKLSIHDLTRYKGIGPAKAITILAACELAKRRAMERAEERQDLGSA 131
Query: 120 QPCLISVERHYPMKNANNFAYCFSI 144
+ +
Sbjct: 132 AAIYDYMHPRMQDLDVEEAWVLLMN 156
>gi|269203278|ref|YP_003282547.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus ED98]
gi|296274911|ref|ZP_06857418.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus MR1]
gi|262075568|gb|ACY11541.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus ED98]
Length = 228
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 KVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|222528576|ref|YP_002572458.1| DNA repair protein RadC [Caldicellulosiruptor bescii DSM 6725]
gi|312623124|ref|YP_004024737.1| DNA repair protein radc [Caldicellulosiruptor kronotskyensis 2002]
gi|222455423|gb|ACM59685.1| DNA repair protein RadC [Caldicellulosiruptor bescii DSM 6725]
gi|312203591|gb|ADQ46918.1| DNA repair protein RadC [Caldicellulosiruptor kronotskyensis 2002]
Length = 232
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH RL+ RF+++G + +++LEL+LF IPRKDT IA L+ F ++ VF A
Sbjct: 8 HEGHRERLKRRFIEQGLDGFEDHQVLELLLFFSIPRKDTNEIAHRLISTFGSISNVFEAH 67
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
LQ++ +G+ A+ + L+S S+R L L + ++ + +
Sbjct: 68 PKELQKVKGVGENSAILISLISQISRRYLADKNRKTFQLRNVEAAAEYIKSLFVGRKNEV 127
Query: 138 FAYCFSI---NIIF 148
F N+I+
Sbjct: 128 FYVICLDTQLNVIY 141
>gi|282904233|ref|ZP_06312121.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus C160]
gi|282906058|ref|ZP_06313913.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908973|ref|ZP_06316791.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|283958413|ref|ZP_06375864.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
A017934/97]
gi|297590804|ref|ZP_06949442.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus MN8]
gi|282327237|gb|EFB57532.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331350|gb|EFB60864.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595851|gb|EFC00815.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus C160]
gi|283790562|gb|EFC29379.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
A017934/97]
gi|297575690|gb|EFH94406.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus MN8]
Length = 228
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 QVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|238916926|ref|YP_002930443.1| DNA repair protein RadC [Eubacterium eligens ATCC 27750]
gi|238872286|gb|ACR71996.1| DNA repair protein RadC [Eubacterium eligens ATCC 27750]
Length = 230
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 45/121 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
++ LQ G +L E+L I+ + +A+ LL+ L G++ + L +I
Sbjct: 17 PYEKCLQHGAMSLDNAELLAAIIRTGTNGLSSIQLAEKLLESAGNLKGLYDMSVSELMQI 76
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IGK A+++ + S+RI K + + + +
Sbjct: 77 KGIGKAKAVQICCILELSRRIAKQKARERLDFSNAETIAGYYMEDMRHLEKEHLVLVMLD 136
Query: 145 N 145
N
Sbjct: 137 N 137
>gi|317402956|gb|EFV83496.1| DNA repair protein radC [Achromobacter xylosoxidans C54]
Length = 225
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R+R L+ G +AL E+L + L +P + ++ LL RF L G+ GA LQ
Sbjct: 11 DRPRERLLRLGASALQNAELLAIALRTGVPGLNVLDLSCQLLDRFHGLRGLLGATPEELQ 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G A L + ++R ++ + L + + +
Sbjct: 71 ALPGLGTAKACALAAILEMAKRAVEEELARDSTLDHPSRVKQYCRVTLAHRRVEHCIALY 130
Query: 143 SI 144
Sbjct: 131 LD 132
>gi|295428233|ref|ZP_06820862.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|295127633|gb|EFG57270.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|315195564|gb|EFU25951.1| hypothetical protein CGSSa00_07855 [Staphylococcus aureus subsp.
aureus CGS00]
Length = 184
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 QVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|319764035|ref|YP_004127972.1| DNA repair protein radc [Alicycliphilus denitrificans BC]
gi|330823690|ref|YP_004386993.1| DNA repair protein RadC [Alicycliphilus denitrificans K601]
gi|317118596|gb|ADV01085.1| DNA repair protein RadC [Alicycliphilus denitrificans BC]
gi|329309062|gb|AEB83477.1| DNA repair protein RadC [Alicycliphilus denitrificans K601]
Length = 237
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 13/133 (9%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL-------------KRFATLG 71
R++ L +G AL+ E+L ++L + K +A+ LL F +
Sbjct: 12 PREKLLARGPAALSDAELLAILLRTGMVGKGVLQLAQELLGAPVRDDDGRITGGGFGGMA 71
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
G+ A L I +G EL V ++R L ++ ++ H
Sbjct: 72 GLLHAGAADLARIKGLGPAKRAELVAVLELARRALAQQLREREVFDSPGAVQGYLQLHLA 131
Query: 132 MKNANNFAYCFSI 144
+ FA F
Sbjct: 132 ARAHEVFAVLFLD 144
>gi|294637895|ref|ZP_06716164.1| DNA repair protein RadC [Edwardsiella tarda ATCC 23685]
gi|291088921|gb|EFE21482.1| DNA repair protein RadC [Edwardsiella tarda ATCC 23685]
Length = 227
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 50/121 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L+ E+L L L +P +A+ LL RF +L G+ A +
Sbjct: 15 PREKLLLLGAASLSDQELLALFLRTGVPGMHVFQLAQQLLIRFGSLQGILQADVDTFCAT 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G +L+ V S+R+L+ S +T + ++ + F F
Sbjct: 75 PGLGVAKFAQLQAVLELSRRVLQHRMSEVSAMTSPDLTALFLQNLFAALEREAFVVLFLD 134
Query: 145 N 145
N
Sbjct: 135 N 135
>gi|293400888|ref|ZP_06645033.1| DNA repair protein RadC [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305914|gb|EFE47158.1| DNA repair protein RadC [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 225
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 51/130 (39%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + R R++ +Q G NAL+ E++ L+L +A +L ATLG +
Sbjct: 2 KVKELKEEERPREKAIQYGVNALSNRELIALLLRSGTQSLSALELADKVLALKATLGELG 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A + L I I + A+EL +RI K+ + Q L + +
Sbjct: 62 NASIQELMCIKGIKQAKAIELNAAFELCRRIAFDKVMHKEQIEEPQDILEWLNQEIGYAK 121
Query: 135 ANNFAYCFSI 144
+F F
Sbjct: 122 QEHFLVLFLD 131
>gi|134300388|ref|YP_001113884.1| DNA repair protein RadC [Desulfotomaculum reducens MI-1]
gi|172044335|sp|A4J7K6|Y2549_DESRM RecName: Full=UPF0758 protein Dred_2549
gi|134053088|gb|ABO51059.1| DNA replication and repair protein RadC [Desulfotomaculum reducens
MI-1]
Length = 227
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L++G +L ++L ++L + +A L F L + A + L
Sbjct: 13 MRPRERMLKEGAGSLTEIDLLAIMLRTGTSKVSVLELAAELFSHFKDLRALSQATIEELS 72
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I +G A+++K +R+ + + + V + +F
Sbjct: 73 QIKGVGPVKAVQVKAALELGRRLAAMPAETRVIIRCPEDVCGLVMEDLRDLDREHFLALL 132
Query: 143 SI 144
Sbjct: 133 LN 134
>gi|257794047|ref|ZP_05643026.1| DNA repair protein RadC [Staphylococcus aureus A9781]
gi|257788019|gb|EEV26359.1| DNA repair protein RadC [Staphylococcus aureus A9781]
Length = 173
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 5 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 64
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 65 KVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 124
Query: 143 SI--NII 147
N++
Sbjct: 125 LNSKNVV 131
>gi|188589437|ref|YP_001919945.1| DNA repair protein RadC [Clostridium botulinum E3 str. Alaska E43]
gi|238689648|sp|B2V090|Y547_CLOBA RecName: Full=UPF0758 protein CLH_0547
gi|188499718|gb|ACD52854.1| DNA repair protein RadC [Clostridium botulinum E3 str. Alaska E43]
Length = 229
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 3/140 (2%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ I + R +++ L G + L E+L +IL ++ ++ LL F L
Sbjct: 2 ENSLKIKDIPKNERPKEKLLSYGADTLNNSELLAIILRTGTKGENVLQLSNRLLSEFQGL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKAN-WSIKKFLTPGQPCLISVERH 129
G+ A L + I I + A ++ ++ +R + + +
Sbjct: 62 DGILEASLDDITSIKGIKEGKASQILALAELFRRFRTFKSADRDIKIMSPNDIAMLINGE 121
Query: 130 YPMKNANNFAYCFSI--NII 147
+ F NI+
Sbjct: 122 MSLLKQEILKVIFLNTKNIV 141
>gi|110807685|ref|YP_691205.1| DNA repair protein RadC [Shigella flexneri 5 str. 8401]
gi|110617233|gb|ABF05900.1| DNA repair protein [Shigella flexneri 5 str. 8401]
Length = 209
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 46/116 (39%)
Query: 29 FLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIG 88
L+ G +AL E+L L L KD ++AK +L+ F +L G+ + ++ IG
Sbjct: 1 MLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIG 60
Query: 89 KRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+LK ++ ++R + L + ++ + F F
Sbjct: 61 VAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 116
>gi|313884927|ref|ZP_07818679.1| DNA repair protein RadC [Eremococcus coleocola ACS-139-V-Col8]
gi|312619618|gb|EFR31055.1| DNA repair protein RadC [Eremococcus coleocola ACS-139-V-Col8]
Length = 229
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 44/120 (36%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L G AL+ E++ ++L + + +A LLKRF +L + A + L +
Sbjct: 15 PRERLLSFGVKALSNQELMAILLRTGWRKDNVIVLAGHLLKRFESLHELGQASIEELTQT 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A+E+ +R + +T + + F
Sbjct: 75 PGIGPVKAIEIIAALELGRRCASSQLPKYGQITSTRSAGQWLMIEMADLQQEYLMALFLN 134
>gi|150390056|ref|YP_001320105.1| DNA repair protein RadC [Alkaliphilus metalliredigens QYMF]
gi|172052477|sp|A6TQH8|Y2289_ALKMQ RecName: Full=UPF0758 protein Amet_2289
gi|149949918|gb|ABR48446.1| DNA repair protein RadC [Alkaliphilus metalliredigens QYMF]
Length = 232
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL-KRFATLGGVFGAPLHLL 81
R R++ L G +L+ E+L +IL +A +L L + + L
Sbjct: 17 ERPREKLLNYGPESLSNPELLAIILSTGTKEMSAIDLATHVLSYSEEGLRHLKNCEIEEL 76
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
Q+I +G A ++ +RI + + + F
Sbjct: 77 QQIKGVGIAKASQILAAVELGKRISLTSRVNHYRIKSPDDVSNLLMEEMRYLKKEYFNIA 136
Query: 142 FSI 144
Sbjct: 137 LLN 139
>gi|302333327|gb|ADL23520.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 228
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 QVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|251780848|ref|ZP_04823768.1| DNA repair protein RadC [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243085163|gb|EES51053.1| DNA repair protein RadC [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 229
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 3/140 (2%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ I + R +++ L G + L E+L +IL ++ ++ LL F L
Sbjct: 2 ENSLKIKDIPKNERPKEKLLSYGADTLNNSELLAIILRTGTKGENVLQLSNRLLSEFQGL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKAN-WSIKKFLTPGQPCLISVERH 129
G+ A L + I I + A ++ ++ +R + + +
Sbjct: 62 DGILEASLDDITSIKGIKEGKASQILALAELFKRFRTFKSADRDIKIMSPNDIAMLINGE 121
Query: 130 YPMKNANNFAYCFSI--NII 147
+ F NI+
Sbjct: 122 MSLLKQEILKVIFLNTKNIV 141
>gi|300853909|ref|YP_003778893.1| DNA repair protein, RadC family [Clostridium ljungdahlii DSM 13528]
gi|300434024|gb|ADK13791.1| DNA repair protein, RadC family [Clostridium ljungdahlii DSM 13528]
Length = 230
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R + G L+ E+L +IL +++ S++ ++K L G+F + L L
Sbjct: 14 ERPRERLFRYGPEVLSNSELLAIILGSGTKKENIISLSSRIIKDNGGLNGIFNSNLEDLM 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I IGK + ++ V ++R + + V F
Sbjct: 74 NIRGIGKAKSAKIFAVVELAKRFKSYRDGDDYKICNPGDAAMLVMEEMKGLKQEYFKVIM 133
Query: 143 SI--NII 147
NI+
Sbjct: 134 LNTKNIV 140
>gi|262052235|ref|ZP_06024440.1| hypothetical protein SA930_0195 [Staphylococcus aureus 930918-3]
gi|259159836|gb|EEW44875.1| hypothetical protein SA930_0195 [Staphylococcus aureus 930918-3]
Length = 180
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 KVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|241889686|ref|ZP_04776984.1| DNA repair protein RadC homolog [Gemella haemolysans ATCC 10379]
gi|241863308|gb|EER67692.1| DNA repair protein RadC homolog [Gemella haemolysans ATCC 10379]
Length = 257
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++F + G AL+ EIL ++L ++ ++ +LK + + L L
Sbjct: 13 DRPREKFKKLGALALSDKEILAILLRTGTKNQNVIELSDIILKDIGGITKLRDVTLTELM 72
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ IG+ A+ + ++RI N K Q ++ F
Sbjct: 73 KHKGIGQEKAIHILANIEFARRIYATNVLDVKC-DSPQSIANYLKSSLENLTQEVFVVL 130
>gi|257431077|ref|ZP_05607454.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
68-397]
gi|257278025|gb|EEV08673.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
68-397]
Length = 180
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 QVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|319647199|ref|ZP_08001421.1| hypothetical protein HMPREF1012_02460 [Bacillus sp. BT1B_CT2]
gi|317390546|gb|EFV71351.1| hypothetical protein HMPREF1012_02460 [Bacillus sp. BT1B_CT2]
Length = 128
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 47/118 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L G +L+ +E+L ++L ++ ++ LL+ F L + A L
Sbjct: 10 ERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELS 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
I+ IG+ A+++ +RI + + + + + +F
Sbjct: 70 SISGIGRAKAVQILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVC 127
>gi|293115593|ref|ZP_05792219.2| DNA repair protein RadC [Butyrivibrio crossotus DSM 2876]
gi|292808989|gb|EFF68194.1| DNA repair protein RadC [Butyrivibrio crossotus DSM 2876]
Length = 233
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 2/122 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV--FGAPLHLLQ 82
++ + G +L E+L +I+ K+ +A+ L K +G +
Sbjct: 19 PYEKCERYGAASLTDVELLAVIIRSGTKDKNCIQVAEELFKLSGNMGILGLKHLTQRDYC 78
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I+ IGK ++ + + S RI KA + + + F
Sbjct: 79 SIDGIGKVKSIMFQCIGELSSRISKATMAKRTVFNTSKDAADYCMEELRHLEYECFMVLL 138
Query: 143 SI 144
Sbjct: 139 LN 140
>gi|328957163|ref|YP_004374549.1| DNA repair protein RadC [Carnobacterium sp. 17-4]
gi|328673487|gb|AEB29533.1| DNA repair protein RadC [Carnobacterium sp. 17-4]
Length = 230
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 49/121 (40%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R Q GE ALA +E+L ++L + ++A ++L +F L + A L
Sbjct: 17 RPRERLEQYGEKALANHELLAILLRTGTKGTNVVTLALSMLNQFEDLYYLKTASCQELMT 76
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ IG+ A+ELK RI +A+ +T + + +
Sbjct: 77 VAGIGRIKAIELKAAIELGTRISQASQIKIGQITSSTKAGEMLLLEMRGLQQEHLVVLYL 136
Query: 144 I 144
Sbjct: 137 N 137
>gi|42520237|ref|NP_966152.1| DNA repair protein RadC [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42409975|gb|AAS14086.1| DNA repair protein RadC [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 224
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 53/125 (42%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR++ + +L YE+LE IL+ R D K +AK+L++ F +L VF A L
Sbjct: 7 GHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPVAKSLIESFGSLNKVFNADLE 66
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
LQ ++ + + V A R + + + L + N NF
Sbjct: 67 ALQNVDDVSNAAISAIFCVKQAFVRSAREEIKNLPVIDNWEKLLDYLRISIGSLNKENFR 126
Query: 140 YCFSI 144
+
Sbjct: 127 VIYMN 131
>gi|325528992|gb|EGD06011.1| hypothetical protein B1M_03557 [Burkholderia sp. TJI49]
Length = 230
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L++G AL E++ L+L + + A LL++F TL G+ A
Sbjct: 18 PRERLLERGPAALTDEELVALLLGSGVRGHNVFDSATKLLRQFGTLRGMLDATADDFDAY 77
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A L V+ ++R L + ++ + + + F +
Sbjct: 78 PGIGPARAALLSAVTELARRALAEKATARQPIDSPGAVEDYLRLMIGARTHEVFVTLYLD 137
>gi|304383349|ref|ZP_07365815.1| DNA repair protein RadC [Prevotella marshii DSM 16973]
gi|304335517|gb|EFM01781.1| DNA repair protein RadC [Prevotella marshii DSM 16973]
Length = 232
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 2/140 (1%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL- 64
M P+K S +R R++ +G +L+ E+L +I+ P + + K +L
Sbjct: 1 MKTTPTKLSITQ-WAEEDRPREKLRDQGAESLSNAELLAIIIGSGTPHESAVELMKRILS 59
Query: 65 KRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
+L + + L N IG+ A+ L +R + + L
Sbjct: 60 DNNNSLSHLGKLRISDLCRYNGIGEAKAISLLAAYELGKRRQREKVGERPDLGSATAIYN 119
Query: 125 SVERHYPMKNANNFAYCFSI 144
+ +
Sbjct: 120 YMHPIMQDLDVEEAWVLLMN 139
>gi|221142588|ref|ZP_03567081.1| DNA repair protein RadC-like protein [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|304380747|ref|ZP_07363416.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|304340746|gb|EFM06677.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
Length = 179
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 KVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|258415751|ref|ZP_05682022.1| DNA repair protein RadC [Staphylococcus aureus A9763]
gi|258422012|ref|ZP_05684932.1| DNA repair protein RadC [Staphylococcus aureus A9719]
gi|258444926|ref|ZP_05693246.1| DNA repair protein RadC [Staphylococcus aureus A6300]
gi|258447980|ref|ZP_05696112.1| DNA repair protein RadC [Staphylococcus aureus A6224]
gi|258451824|ref|ZP_05699846.1| DNA repair protein RadC [Staphylococcus aureus A5948]
gi|258454312|ref|ZP_05702281.1| DNA repair protein RadC [Staphylococcus aureus A5937]
gi|282929335|ref|ZP_06336902.1| DNA repair protein radC [Staphylococcus aureus A10102]
gi|257839344|gb|EEV63817.1| DNA repair protein RadC [Staphylococcus aureus A9763]
gi|257842056|gb|EEV66485.1| DNA repair protein RadC [Staphylococcus aureus A9719]
gi|257856134|gb|EEV79049.1| DNA repair protein RadC [Staphylococcus aureus A6300]
gi|257858741|gb|EEV81612.1| DNA repair protein RadC [Staphylococcus aureus A6224]
gi|257860536|gb|EEV83362.1| DNA repair protein RadC [Staphylococcus aureus A5948]
gi|257863542|gb|EEV86301.1| DNA repair protein RadC [Staphylococcus aureus A5937]
gi|282589067|gb|EFB94168.1| DNA repair protein radC [Staphylococcus aureus A10102]
gi|315130708|gb|EFT86694.1| hypothetical protein CGSSa03_10705 [Staphylococcus aureus subsp.
aureus CGS03]
Length = 178
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 KVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|87199332|ref|YP_496589.1| DNA repair protein RadC [Novosphingobium aromaticivorans DSM 12444]
gi|87135013|gb|ABD25755.1| DNA repair protein RadC [Novosphingobium aromaticivorans DSM 12444]
Length = 245
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 8 KAPSKDSHLDY-----IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA 62
+ P K + D+ GH RLR R + GE+ALA +E++E +L PR DTK IA++
Sbjct: 11 QEPGKGTRTDFDGADPSGHRARLRKRLMAGGEDALADHEVIEYLLMVARPRIDTKPIARS 70
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
L++RF +L GV A L +G+ A L++V++A++R+ + + L+ Q
Sbjct: 71 LVQRFGSLAGVLNADPQALALHPNMGETSAAALRIVALAARRLARTVVREQPILSNWQAL 130
Query: 123 LISVERHYPMKNANNFAYCFSI 144
L + +
Sbjct: 131 LDYLHIDMAHLTVERVRVLYLN 152
>gi|77917683|ref|YP_355498.1| DNA repair protein RadC [Pelobacter carbinolicus DSM 2380]
gi|123575192|sp|Q3A8G4|Y065_PELCD RecName: Full=UPF0758 protein Pcar_0065
gi|77543766|gb|ABA87328.1| DNA replication and repair protein RadC [Pelobacter carbinolicus
DSM 2380]
Length = 227
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 2/130 (1%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIP--RKDTKSIAKALLKRFATLGGVF 74
R R++ L +G AL+ E+L LIL + L+++F TL +
Sbjct: 5 KDWPEDERPREKLLHRGAEALSDAELLALILRSGDAASGHSALDQGRLLIQQFDTLRQMA 64
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A LQ I IG A EL+ V ++R + T Q
Sbjct: 65 TATTSELQAIKGIGPAKAAELQAVFELARRFGRNPLRPGDRYTSPQAVFAHFHERLRDHK 124
Query: 135 ANNFAYCFSI 144
F
Sbjct: 125 RERFIALLLD 134
>gi|255527526|ref|ZP_05394394.1| DNA repair protein RadC [Clostridium carboxidivorans P7]
gi|255508796|gb|EET85168.1| DNA repair protein RadC [Clostridium carboxidivorans P7]
Length = 228
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 53/140 (37%), Gaps = 2/140 (1%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ + + + R R+R L+ G +L+ E+L +IL +++ S++ ++K L
Sbjct: 2 EQTLKIMDLPENERPRERLLRYGTQSLSNAELLAIILSSGTKKENVLSLSNRIIKETGGL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
G+ + ++ IG+ A +L + S+R ++ + V
Sbjct: 62 NGLLKSTAEDFMSLSGIGEAKAAQLMALLEISKRFKSYRDGNDYKVSKPRDAAALVMDEM 121
Query: 131 PMKNANNFAYCFSI--NIIF 148
+ N++
Sbjct: 122 KNFKQEHLKVIMLNTKNVVL 141
>gi|291166595|gb|EFE28641.1| DNA repair protein RadC [Filifactor alocis ATCC 35896]
Length = 227
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 39/123 (31%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R++ ++ G +AL+ E+L +IL K +++ +L L G+ ++
Sbjct: 12 DEKPREKMMKLGVSALSNVELLAIILDTGSSDKSVLDLSQEVLSLSKGLSGIRSLSINDF 71
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG + S RI K + F
Sbjct: 72 LSIKGIGPAKTGRILASLELSSRIAKQESEDLFQIDSAVSVANLFMEELRYLKREVFKVL 131
Query: 142 FSI 144
F
Sbjct: 132 FLD 134
>gi|298694931|gb|ADI98153.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus ED133]
Length = 228
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNIELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 QVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|322373383|ref|ZP_08047919.1| DNA repair protein RadC [Streptococcus sp. C150]
gi|321278425|gb|EFX55494.1| DNA repair protein RadC [Streptococcus sp. C150]
Length = 228
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R LQKG L+ E+L ++L + S+A +LK +L + L+ LQ I
Sbjct: 13 PRERLLQKGAEVLSDQELLAIVLRTGTRSESVLSMASRILKGMTSLADLSRLSLNELQAI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ ++ELK + S+RI KA + + + Q + K + +
Sbjct: 73 PGIGRVKSIELKAMVELSKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLD 132
>gi|238924108|ref|YP_002937624.1| DNA repair protein RadC [Eubacterium rectale ATCC 33656]
gi|238875783|gb|ACR75490.1| DNA repair protein RadC [Eubacterium rectale ATCC 33656]
Length = 229
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-RFATLGGVFGAPLHLL 81
R ++FL G + L+ ++L +I+ K IA+ +L + + L ++ L
Sbjct: 14 ERPYEKFLSLGASGLSDADLLAIIIKTGTRDKTVIDIAQDILSGKHSNLLNLYEMSYEEL 73
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG+ A++LK ++ S RI K + Q
Sbjct: 74 LSIPGIGQIKAIQLKAIAELSLRIAKTKKVQSIRMNNPQTIADYYMEQMRHLTNEVVICA 133
Query: 142 FSI 144
+
Sbjct: 134 YFD 136
>gi|15894524|ref|NP_347873.1| DNA repair protein RadC [Clostridium acetobutylicum ATCC 824]
gi|25009038|sp|Q97JN2|Y1241_CLOAB RecName: Full=UPF0758 protein CA_C1241
gi|15024167|gb|AAK79213.1|AE007637_3 RadC protein ortholog [Clostridium acetobutylicum ATCC 824]
gi|325508656|gb|ADZ20292.1| DNA repair protein RadC [Clostridium acetobutylicum EA 2018]
Length = 229
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G L+ E+L +IL ++ +++ +LK L GV L+
Sbjct: 15 ERPRERLLRYGSEVLSNSELLAIILRTGTLHENIINLSSRILKESGGLNGVLNLSFEELK 74
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG A+++ + +R +T + V N +
Sbjct: 75 KVKGIGNAKAVQILALGELFKRFKAYKSFESVKITSPKEAANLVMEQLRSFNKEHLYVIM 134
Query: 143 SI--NII 147
NI+
Sbjct: 135 LNTKNIV 141
>gi|312878119|ref|ZP_07738052.1| DNA repair protein RadC [Caldicellulosiruptor lactoaceticus 6A]
gi|311795101|gb|EFR11497.1| DNA repair protein RadC [Caldicellulosiruptor lactoaceticus 6A]
Length = 232
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH RL+ RF+++G + +++LEL+LF IPRKDT IA L+ F ++ VF A
Sbjct: 8 HEGHRERLKKRFVEQGLDGFEDHQVLELLLFFSIPRKDTNEIAHRLISTFGSISNVFEAH 67
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
LQ++ +G+ A+ + L+S S+R L L + ++ + +
Sbjct: 68 PKELQKVKGVGENSAILISLISQISRRYLADKNRKNFQLRNVEVAAEYIKSLFVGRKNEV 127
Query: 138 FAYCFSI---NIIF 148
F N+I+
Sbjct: 128 FYVICLDTQLNVIY 141
>gi|291533850|emb|CBL06963.1| DNA replication and repair protein RadC [Megamonas hypermegale
ART12/1]
Length = 229
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 2/134 (1%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF--ATL 70
+ + + R R++ L G AL+ E+L ++L +K +++ +L ++ L
Sbjct: 2 STSIKDLPDEERPREKLLTLGAKALSNVELLAILLHSGTRKKSVFELSQEILAKYKEDGL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+ + L I +G L R+ K + K + + V
Sbjct: 62 ASLVNSSPKELISIKGLGLAKVTTLLAAIELGLRLAKKPSAQKLAIKRPLDVVNYVMPRL 121
Query: 131 PMKNANNFAYCFSI 144
+ +FA
Sbjct: 122 RYEKKEHFAILLLD 135
>gi|261494189|ref|ZP_05990691.1| DNA repair protein RadC [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261495585|ref|ZP_05992031.1| DNA repair protein RadC [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261308692|gb|EEY09949.1| DNA repair protein RadC [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310170|gb|EEY11371.1| DNA repair protein RadC [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 245
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G +L E+L + L ++A+++L F +L + A + +I
Sbjct: 20 PREKLLTQGAASLTDAELLAIFLRTGTKAVPVLALAESVLMAFGSLRQLLNANIDDFCKI 79
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+GK ++L+ ++R L + + ++ + + F F
Sbjct: 80 YGLGKTKYIQLQASKEMTKRYLAQQMEFSEMIQAPYMAIMYFQTELEEEEREVFMVLFLD 139
Query: 145 N 145
N
Sbjct: 140 N 140
>gi|220932261|ref|YP_002509169.1| DNA repair protein RadC [Halothermothrix orenii H 168]
gi|219993571|gb|ACL70174.1| DNA repair protein RadC [Halothermothrix orenii H 168]
Length = 228
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 42/117 (35%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRI 87
+ ++ G AL+ E+L LI+ ++ +++ +L F L + + + IN +
Sbjct: 19 KLIKHGARALSNAELLALIIRTGNKKRTAVELSQDILNFFGGLEALNDISVEEITRINGV 78
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G +++ S+R+ KA + + V F
Sbjct: 79 GLAKGAQIQATVELSKRLFKAGKDNRPVVKSPGDVAELVMPDMRYLKQEVFKIILFD 135
>gi|224476750|ref|YP_002634356.1| putative DNA repair protein RadC [Staphylococcus carnosus subsp.
carnosus TM300]
gi|254789659|sp|B9DNE3|Y1264_STACT RecName: Full=UPF0758 protein Sca_1264
gi|222421357|emb|CAL28171.1| putative DNA repair protein RadC [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 226
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 2/133 (1%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ +++ +++ + KG LA E+L +++ + +A+ L+K +L +
Sbjct: 4 KQLPENDKPKEKLIAKGAAHLADSELLAILINTGRKGHSSIEVAQDLIKMARSLKELKLL 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L+ + ++ IG A+ LK +R+ + K +T Q
Sbjct: 64 SLNDIMKVKGIGLNKAIILKAAFELGERMYIPDLDTKVKITSPQDAADYFLSRMMHLTHE 123
Query: 137 NFAYCFSI--NII 147
F F N++
Sbjct: 124 QFEVLFLNSKNVV 136
>gi|312863769|ref|ZP_07724007.1| DNA repair protein RadC [Streptococcus vestibularis F0396]
gi|311101305|gb|EFQ59510.1| DNA repair protein RadC [Streptococcus vestibularis F0396]
Length = 228
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R LQKG L+ E+L ++L + S+A +L +L + L+ LQEI
Sbjct: 13 PRERLLQKGAEVLSDQELLAIVLRTGTKSESVLSMANRILTGMTSLADLSRLSLNELQEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ ++ELK + ++RI KA + + + Q + K + +
Sbjct: 73 PGIGRVKSIELKAMVELAKRIEKAELARSEQIMSSQQMARRMMLDIGDKPQEHLVAIYLD 132
>gi|224536395|ref|ZP_03676934.1| hypothetical protein BACCELL_01269 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521987|gb|EEF91092.1| hypothetical protein BACCELL_01269 [Bacteroides cellulosilyticus
DSM 14838]
Length = 228
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 36/127 (28%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAP 77
+R R++ + KG AL+ E+L +++ + S+ + +L L +
Sbjct: 9 WAEEDRPREKMMLKGAEALSDAELLAILIGSGNTEESAVSLMQRVLSTCGNDLNQLGKWE 68
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ G ++ + +R + + +
Sbjct: 69 VQDFSSFKGFGPAKSITIMAALELGKRRKLQERPERATIHSSKDIYEIFHPLLCDLTHEE 128
Query: 138 FAYCFSI 144
F
Sbjct: 129 FWVLLLN 135
>gi|124267880|ref|YP_001021884.1| DNA repair protein RadC [Methylibium petroleiphilum PM1]
gi|171769841|sp|A2SJB0|Y2695_METPP RecName: Full=UPF0758 protein Mpe_A2695
gi|124260655|gb|ABM95649.1| DNA repair protein radC family [Methylibium petroleiphilum PM1]
Length = 222
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 49/121 (40%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ L +G ALA E+L L+L + + +A+ALL RF L G+ L
Sbjct: 9 RPREKLLARGPAALADAELLALLLRTGLKGQGVLQLAQALLDRFGGLSGLLATDTAELGS 68
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G EL V ++R L + + Q ++ K FA F
Sbjct: 69 VKGLGPAKRAELAAVLEIARRSLASRLAQTPVFDSPQAVKDYLQLQLASKPHEVFAVLFL 128
Query: 144 I 144
Sbjct: 129 D 129
>gi|39995494|ref|NP_951445.1| DNA repair protein RadC [Geobacter sulfurreducens PCA]
gi|54036228|sp|Q74G62|Y386_GEOSL RecName: Full=UPF0758 protein GSU0386
gi|39982257|gb|AAR33718.1| DNA repair protein RadC [Geobacter sulfurreducens PCA]
gi|298504494|gb|ADI83217.1| protein of unknown function DUF2466 [Geobacter sulfurreducens
KN400]
Length = 229
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 3/129 (2%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRL--IPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ L++G L+ E+L LI+ + + + +ALL+ L + GA
Sbjct: 8 WPEDERPREKLLRRGAPVLSDAELLALIIRTGDSVTGRSAIDLGRALLQECGDLRTLAGA 67
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIK-KFLTPGQPCLISVERHYPMKNA 135
+ L + +G A +K + RI I + T + + +
Sbjct: 68 TVSELCAVKGMGTAKATSIKAALEMASRINSERLMICSERFTSPEQVYNHYHYAFRDRRK 127
Query: 136 NNFAYCFSI 144
F
Sbjct: 128 EYFMALLLD 136
>gi|329769004|ref|ZP_08260427.1| hypothetical protein HMPREF0433_00191 [Gemella sanguinis M325]
gi|328835811|gb|EGF85534.1| hypothetical protein HMPREF0433_00191 [Gemella sanguinis M325]
Length = 258
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 1/121 (0%)
Query: 21 HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHL 80
+R R++F + G AL+ EIL ++L I ++ +A ++LK + +
Sbjct: 12 EDDRPREKFRKFGATALSDKEILAILLRTGIKNQNVIELADSILKDVGGITKLRDVTFDE 71
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L + IG A+ + ++RI N K + + ++ F
Sbjct: 72 LTKHKGIGTEKAIHILANIEFARRIYATNVLDVKC-SSPESIARYLKSSVENLTQEVFIV 130
Query: 141 C 141
Sbjct: 131 L 131
>gi|161523974|ref|YP_001578986.1| DNA repair protein RadC [Burkholderia multivorans ATCC 17616]
gi|189351265|ref|YP_001946893.1| DNA repair protein RadC [Burkholderia multivorans ATCC 17616]
gi|160341403|gb|ABX14489.1| DNA repair protein RadC [Burkholderia multivorans ATCC 17616]
gi|189335287|dbj|BAG44357.1| DNA repair protein [Burkholderia multivorans ATCC 17616]
Length = 256
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 47/120 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L++G AL E++ L+L + + A+ALL RF +L G+ A
Sbjct: 44 PRERLLERGPAALTDDELVALLLGSGVRGHSVFASARALLVRFGSLRGLLDATPADFGAC 103
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A L ++ ++R L +++ + + + F +
Sbjct: 104 PGIGPARAGLLGAITELARRALAEKALLRRPIDSPAAVDDYLRLKIGTRPYEVFVTLYLD 163
>gi|70726267|ref|YP_253181.1| hypothetical protein SH1266 [Staphylococcus haemolyticus JCSC1435]
gi|123660411|sp|Q4L700|Y1266_STAHJ RecName: Full=UPF0758 protein SH1266
gi|68446991|dbj|BAE04575.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 228
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + G +L+ E+L +++ + IA LL F L + ++ L I
Sbjct: 12 PRERLIHNGAKSLSNSELLAILINTGRHGFSSLDIANELLISFNGLKELKHLSINDLTTI 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A+ LK +R+ +++ K +T + +F
Sbjct: 72 KGIGLYKAVILKAAFELGERMYARDFNEKIKITSPSDVSNIMMSKMKDLTQEHFVVLLLN 131
Query: 145 --NII 147
NI+
Sbjct: 132 SKNIV 136
>gi|221199269|ref|ZP_03572313.1| DNA repair protein RadC [Burkholderia multivorans CGD2M]
gi|221205829|ref|ZP_03578844.1| DNA repair protein RadC [Burkholderia multivorans CGD2]
gi|221174667|gb|EEE07099.1| DNA repair protein RadC [Burkholderia multivorans CGD2]
gi|221180554|gb|EEE12957.1| DNA repair protein RadC [Burkholderia multivorans CGD2M]
Length = 214
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 47/120 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L++G AL E++ L+L + + A+ALL RF +L G+ A
Sbjct: 2 PRERLLERGPAALTDDELVALLLGSGVRGHSVFASARALLVRFGSLRGLLDATPADFGAC 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A L ++ S+R L +++ + + + F +
Sbjct: 62 PGIGPARAALLGAITELSRRALAEKALLRRPIDSPAAVDDYLRLKIGTRPYEVFVTLYLD 121
>gi|295110011|emb|CBL23964.1| DNA replication and repair protein RadC [Ruminococcus obeum A2-162]
Length = 236
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 5/128 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-----ATLGGVFGAP 77
R ++ +++GE +L+ E+L +IL ++ ++A +LK L G+ +
Sbjct: 12 QRPYEKCIREGEGSLSDSELLAVILRTGTRGSNSLTLANDILKHMEQSSYPGLPGIIHSS 71
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L L+ I+ IG A++LK + S+RI +
Sbjct: 72 LPELRRIHGIGAVKAVQLKCIGELSKRIASEAARPMLDFKNPDSIAAYYMEQLRHQEQEV 131
Query: 138 FAYCFSIN 145
N
Sbjct: 132 MICMMLDN 139
>gi|221633793|ref|YP_002523019.1| DNA repair protein RadC-like protein [Thermomicrobium roseum DSM
5159]
gi|221156245|gb|ACM05372.1| DNA repair protein radC homolog [Thermomicrobium roseum DSM 5159]
Length = 261
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 48/139 (34%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
MS+ + + + R R+R Q G L E+L +IL + +A+ LL
Sbjct: 26 MSENRATYHSIKELPASERPRERIQQYGPEVLTNAELLAIILNTGTRGESVLDLAQRLLV 85
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
F L G+ A L L+ + +G+ A +LK +R+ A + + +
Sbjct: 86 EFGGLVGLARADLASLRRFHGLGEAKAAKLKAALELGRRLALAQPEERPVIRTPEDVYAI 145
Query: 126 VERHYPMKNANNFAYCFSI 144
Sbjct: 146 AGAEMATLEQEQLRVVLLD 164
>gi|297569910|ref|YP_003691254.1| DNA repair protein RadC [Desulfurivibrio alkaliphilus AHT2]
gi|296925825|gb|ADH86635.1| DNA repair protein RadC [Desulfurivibrio alkaliphilus AHT2]
Length = 246
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-AT 69
S S GH RLRDRFL G + L ++LEL+L PR+D K A+ LL RF +
Sbjct: 3 SDGSKSKGEGHRQRLRDRFLAHGADGLTDSDMLELLLTMGTPRRDCKEPARELLARFNNS 62
Query: 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
L V A L+++ +G + A + V ++R L+ K++L + +
Sbjct: 63 LSRVLDASQQELEQVKGVGSKNAFAIHFVQAVARRYLRERLIGKEYLRSSREVGDYLLHA 122
Query: 130 YPMKNANNFAYCFSI 144
+
Sbjct: 123 MRGLSRETLVAILLD 137
>gi|325267779|ref|ZP_08134429.1| DNA repair protein RadC [Kingella denitrificans ATCC 33394]
gi|324980660|gb|EGC16322.1| DNA repair protein RadC [Kingella denitrificans ATCC 33394]
Length = 237
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 45/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
R R++ LQ+G AL+ E+L ++L +A++LL+ + L GV A
Sbjct: 16 KDWAEGERPREKLLQRGAAALSDAELLAILLRVGTQGMSAVDLARSLLQHYQGLSGVMTA 75
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L + +G + V +R+L + L Q + +
Sbjct: 76 SAAELSQHKGMGTAAFAQFATVLEIGRRVLGEQLQQQPLLQTPQAACDYLRLRIGHERVE 135
Query: 137 NFAYCFSI 144
F
Sbjct: 136 VSLALFLD 143
>gi|319947102|ref|ZP_08021336.1| DNA repair protein RadC [Streptococcus australis ATCC 700641]
gi|319747150|gb|EFV99409.1| DNA repair protein RadC [Streptococcus australis ATCC 700641]
Length = 227
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L +G + L++ E+L ++L K IA+ LL +L + L LQE+
Sbjct: 13 PRERLLTEGPDKLSHQELLSILLRTGNKNKTVYEIAQDLLGSLKSLKELASMSLQELQEV 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IGK A+EL +RI + + + Q +++ + + +
Sbjct: 73 PGIGKVKAIELLAAIELGKRIQTSQVIETEQIMSSQKLAKMMQQKIGHEKQEHLLALYLN 132
>gi|91201867|emb|CAJ74927.1| similar to DNA repair protein RadC [Candidatus Kuenenia
stuttgartiensis]
Length = 232
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 44/138 (31%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
+ SK + + + R R+R +Q E L E+L +I+ +AK LL +
Sbjct: 2 QEKSKRPTIKQLPLNERPRERLIQGSEEHLTDAELLGIIIRDGTQEYSAIDLAKKLLSDY 61
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
+ + L ++ IG A ++K ++R +
Sbjct: 62 GDFRALSAISIGELCKVKGIGPARAAQIKASLAIARRFSTIPVKTAQQFKKSSDIFHHFH 121
Query: 128 RHYPMKNANNFAYCFSIN 145
K F N
Sbjct: 122 ERLREKKQEYFLITLLDN 139
>gi|254361402|ref|ZP_04977543.1| DNA repair protein RadC [Mannheimia haemolytica PHL213]
gi|153092908|gb|EDN73939.1| DNA repair protein RadC [Mannheimia haemolytica PHL213]
Length = 241
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 48/121 (39%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G +L E+L + L ++A+++L F +L + A + +I
Sbjct: 16 PREKLLTQGAASLTDSELLAIFLRTGTKAVPVLALAESVLMAFGSLRQLLNANIDDFCKI 75
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+GK ++L+ ++R L + + ++ + + F F
Sbjct: 76 YGLGKTKYIQLQASKEMTKRYLAQQMEFSEMIQAPYMAIMYFQTELEEEEREVFMVLFLD 135
Query: 145 N 145
N
Sbjct: 136 N 136
>gi|167758182|ref|ZP_02430309.1| hypothetical protein CLOSCI_00520 [Clostridium scindens ATCC 35704]
gi|167664079|gb|EDS08209.1| hypothetical protein CLOSCI_00520 [Clostridium scindens ATCC 35704]
Length = 230
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
++ + + I R ++ +KG +L+ E+L ++L +D S+A+ +L
Sbjct: 2 NQSNTIKEIPEMERPYEKCERKGAASLSDVELLAVLLRTGTRGEDVLSLARRILYHAGEP 61
Query: 71 GGV--FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
G + + L +I IGK A+++ +S ++R+ KA++ +
Sbjct: 62 GILGIHQFSMERLLKIKGIGKVKAIQISCISELAKRLSKASYQDGLSFSHPATIARYYME 121
Query: 129 HYPMKNANNFAYCFSI 144
+
Sbjct: 122 DLRHEKQEVMKLLMLN 137
>gi|78357485|ref|YP_388934.1| DNA repair protein RadC [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219890|gb|ABB39239.1| DNA repair protein RadC [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 225
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 1/130 (0%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
Y GH RLR++ +K LA YEILELIL ++ R+DTK +AK LL RF +L GV
Sbjct: 4 EPHYHGHRQRLREKL-KKDSTQLADYEILELILGMVLRRQDTKPLAKRLLGRFGSLRGVL 62
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A L +G + L+ R +A + L +
Sbjct: 63 DARPQELMAEKGVGPAMESFWLLLREFIARYAEAPMRERTLLVSSRAVADMARTRLAGCP 122
Query: 135 ANNFAYCFSI 144
+
Sbjct: 123 HEEVWVAYMD 132
>gi|312794199|ref|YP_004027122.1| DNA repair protein radc [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312181339|gb|ADQ41509.1| DNA repair protein RadC [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 232
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH RL+ RF+++G + +++LEL+LF IPRKDT IA L+ F ++ VF A
Sbjct: 8 HEGHRERLKKRFVEQGLDGFEDHQVLELLLFFSIPRKDTNEIAHRLISTFGSISNVFEAH 67
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
LQ+++ +G A+ + L+S S+R L+ L Q ++ + +
Sbjct: 68 PKELQKVDGVGANSAILISLISQISRRYLEDKSRKTFQLRNVQTAAEYIKSLFVGRKNEV 127
Query: 138 FAYCFSI---NIIF 148
F N+I+
Sbjct: 128 FYVICLDTQLNVIY 141
>gi|52549653|gb|AAU83502.1| DNA repair proteins [uncultured archaeon GZfos29E12]
Length = 403
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 2/138 (1%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
++ S + + I R R++ + G L E+L LIL +++ ++ L+ +
Sbjct: 175 ESKSNTTRIKDICQAERPREKLERYGAGYLNNDELLALILRTGHQKENAIEMSHRLINEY 234
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKA-NWSIKKFLTPGQPCLISV 126
L + L+ LQEI IG A ++ + ++R KA + +
Sbjct: 235 G-LDKLSDLALNELQEIKGIGFAKACQIIALFEFNKRHNKAVKTKEIVTIEKPEDVYNYF 293
Query: 127 ERHYPMKNANNFAYCFSI 144
K +F
Sbjct: 294 VDELKDKKKEHFYALLLD 311
>gi|153814880|ref|ZP_01967548.1| hypothetical protein RUMTOR_01095 [Ruminococcus torques ATCC 27756]
gi|317500393|ref|ZP_07958617.1| DNA repair protein RadC [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089600|ref|ZP_08338499.1| hypothetical protein HMPREF1025_02082 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847911|gb|EDK24829.1| hypothetical protein RUMTOR_01095 [Ruminococcus torques ATCC 27756]
gi|316898148|gb|EFV20195.1| DNA repair protein RadC [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404968|gb|EGG84506.1| hypothetical protein HMPREF1025_02082 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 233
Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF---GAPLH 79
+R ++ + G L E+L +++ +++ +++ LL + G+ L
Sbjct: 14 DRPYEKCEKFGAENLTDTELLAILIRTGTKGENSLELSRKLLYKNGFHNGLAGIHKWSLD 73
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L +I IGK A++L +S S+R+ + + K + + +
Sbjct: 74 ELIQIKGIGKVKAIQLVCLSELSKRLARTSTVGKLDFSSPRTIADYYMEDMRHRTREILK 133
Query: 140 YCFSI 144
F
Sbjct: 134 LIFLN 138
>gi|294674886|ref|YP_003575502.1| DNA repair protein RadC [Prevotella ruminicola 23]
gi|294471906|gb|ADE81295.1| DNA repair protein RadC [Prevotella ruminicola 23]
Length = 229
Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAP 77
+R R++ +G AL+ E+L +++ ++ + K +L +L +
Sbjct: 10 WAEEDRPREKMATQGAEALSSAELLAILIGSGSTKESAVDLMKRILADCNNSLNTLGKKS 69
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+H L + N +G+ A+ + +R + L + +
Sbjct: 70 IHDLCQYNGVGEAKAITILAACELGKRRQMETPEERPDLGTATRIYNHMHPVMQDLDVEE 129
Query: 138 FAYCFSI 144
F
Sbjct: 130 FWVLLLN 136
>gi|53711774|ref|YP_097766.1| putative DNA repair protein [Bacteroides fragilis YCH46]
gi|52214639|dbj|BAD47232.1| putative DNA repair protein [Bacteroides fragilis YCH46]
Length = 230
Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 36/129 (27%), Gaps = 1/129 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFG 75
+R R++ + KG AL+ E+L +++ + + + +L +
Sbjct: 9 KQWSKADRPREKMMAKGSEALSDAELLGILIGSGNTEESAVELMRRILATCDNNLNELGK 68
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ +G +L + +R ++ + +
Sbjct: 69 WEVRNFSSFKGMGPAKSLTIMAALELGKRRKLQESKEREQIRCSEDIYKLFHPLMCDLPQ 128
Query: 136 NNFAYCFSI 144
F
Sbjct: 129 EEFWILLLN 137
>gi|197301738|ref|ZP_03166808.1| hypothetical protein RUMLAC_00464 [Ruminococcus lactaris ATCC
29176]
gi|197299178|gb|EDY33708.1| hypothetical protein RUMLAC_00464 [Ruminococcus lactaris ATCC
29176]
Length = 238
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK---RFATLGGVFGAPLH 79
R ++ Q G L E+L ++L +++ +A+ +L L + +
Sbjct: 16 ERPYEKCEQYGAENLTDAELLAVLLRTGTKGENSLRLAQKILHPETDRGGLVNLPQWTVE 75
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L+++ IGK A++++ ++ ++R+ KA + +
Sbjct: 76 QLRQVRGIGKVKAIQIRCLAELARRMAKAEALEGLDFSSPNTIARYYMEDMRHRQKEVMK 135
Query: 140 YCFSI 144
Sbjct: 136 LLLLN 140
>gi|323704266|ref|ZP_08115845.1| DNA repair protein RadC [Thermoanaerobacterium xylanolyticum LX-11]
gi|323536332|gb|EGB26104.1| DNA repair protein RadC [Thermoanaerobacterium xylanolyticum LX-11]
Length = 234
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 47/128 (36%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ +R R+R ++ G + L+ E++ +I+ + +++ LL L +
Sbjct: 10 KDLPEDDRPRERLIKYGPSVLSNAELMAIIIGTGNKDESAIMLSQRLLSEGHGLKYLLDT 69
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L EI IG A ++K +RI +S + + + N
Sbjct: 70 GVERLSEIKGIGLAKAAKIKAAIELGRRIALTGYSDGYIIKKPDDVISLLMDEMRYLNKE 129
Query: 137 NFAYCFSI 144
+F
Sbjct: 130 HFKVVLLN 137
>gi|300772729|ref|ZP_07082599.1| DNA repair protein RadC [Sphingobacterium spiritivorum ATCC 33861]
gi|300761032|gb|EFK57858.1| DNA repair protein RadC [Sphingobacterium spiritivorum ATCC 33861]
Length = 229
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 44/127 (34%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL-KRFATLGGVFGAP 77
++R R++ ++G L+ E+L +++ +D +A+ +L L +
Sbjct: 9 WAENDRPREKLERRGRRVLSNAELLAILIGSGSFGEDAVGLARRILSDHQHNLDFLSQQD 68
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L++ IG A+ + +R ++ L + +
Sbjct: 69 VDDLKKYKGIGSAKAITIIAALELGRRRKESTEKEAIILNCSKKVFEYFKFQLQDLLHEE 128
Query: 138 FAYCFSI 144
F +
Sbjct: 129 FWVLYLN 135
>gi|260881538|ref|ZP_05404673.2| DNA repair protein RadC [Mitsuokella multacida DSM 20544]
gi|260848721|gb|EEX68728.1| DNA repair protein RadC [Mitsuokella multacida DSM 20544]
Length = 226
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 2/128 (1%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA--TLGGVFGA 76
+ R R++ + G +AL+ E+L ++L + +A+++L +F + +
Sbjct: 5 LPRDERPREKLIAYGADALSNAELLAVLLHTGTREQSVLHLAESVLGKFKERGIASIVHT 64
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L I+ IG A + +R+ K + + + V H +
Sbjct: 65 SVADLAGIHGIGPSKAASILAAVELGRRLAKKAAEKVQIVHGPEDAAHYVMPHLRYEQKE 124
Query: 137 NFAYCFSI 144
+FA
Sbjct: 125 HFAVLLLN 132
>gi|163857461|ref|YP_001631759.1| DNA repair protein RadC [Bordetella petrii DSM 12804]
gi|229485545|sp|A9IU27|Y3149_BORPD RecName: Full=UPF0758 protein Bpet3149
gi|163261189|emb|CAP43491.1| DNA repair protein radC homolog [Bordetella petrii]
Length = 225
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 3/135 (2%)
Query: 16 LDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFG 75
+ H R R+R L+ G +L E+L L L + + LL R+ L G+F
Sbjct: 4 PADLPPHERPRERLLRHGPASLRDAELLALALRTGTRGRTAIDMGSQLLHRYGGLRGLFA 63
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
A L + +G A L + ++R + ++ ++ +
Sbjct: 64 ASPQELMSLPGLGAAKAGTLAAILELARRAAEERLMRQQAMSEPGSVKRYFKTALANCAV 123
Query: 136 NNFAYCFSI---NII 147
+ + N+I
Sbjct: 124 EHCLALYLDSQLNLI 138
>gi|319785772|ref|YP_004145247.1| DNA repair protein RadC [Pseudoxanthomonas suwonensis 11-1]
gi|317464284|gb|ADV26016.1| DNA repair protein RadC [Pseudoxanthomonas suwonensis 11-1]
Length = 224
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 44/123 (35%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G AL+ E+L + L + +D A+ LL L + P H L
Sbjct: 10 ERPREKLLARGAAALSDAELLAIFLGSGLQGRDAVETARGLLAAHGPLRALLDRPAHALA 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G A L R L A + LT R + FA F
Sbjct: 70 RLPGLGPARACALAAALELGNRHLAAALERGEALTDPATAGRYFARRLRPRPHEVFAALF 129
Query: 143 SIN 145
N
Sbjct: 130 LDN 132
>gi|325290578|ref|YP_004266759.1| DNA replication and repair protein RadC [Syntrophobotulus
glycolicus DSM 8271]
gi|324965979|gb|ADY56758.1| DNA replication and repair protein RadC [Syntrophobotulus
glycolicus DSM 8271]
Length = 230
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 47/121 (38%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
+ R+R + G +L+ E+L ++L ++ +A +L + + G +H ++
Sbjct: 17 KPRERLYRIGPQSLSDAEVLAILLGTGSKGENVLDLAARILTEAGGISSMAGKSVHDFEQ 76
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I IG+ A ++K +R + + + ++ V + +F
Sbjct: 77 IRGIGQAKAAQVKAALEFGRRSASSTYGQRPIVSSPGDASALVMEEMRFLDREHFRVMHL 136
Query: 144 I 144
Sbjct: 137 N 137
>gi|312128297|ref|YP_003993171.1| DNA repair protein radc [Caldicellulosiruptor hydrothermalis 108]
gi|311778316|gb|ADQ07802.1| DNA repair protein RadC [Caldicellulosiruptor hydrothermalis 108]
Length = 230
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH RL+ RF+++G + +++LEL+LF IPRKDT IA L+ F ++ VF A
Sbjct: 6 HEGHRERLKRRFIEQGLDGFEDHQVLELLLFFSIPRKDTNEIAHRLISTFGSISNVFEAH 65
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
LQ++ +G+ A+ + L+S S+R L L + ++ + +
Sbjct: 66 PKELQKVKGVGENSAILISLISQISRRYLVDKNRKTFQLRNVEVAAEYIKSLFVGRKNEV 125
Query: 138 FAYCFSI---NIIF 148
F N+I+
Sbjct: 126 FYVICLDTQLNVIY 139
>gi|325479032|gb|EGC82133.1| DNA repair protein RadC [Anaerococcus prevotii ACS-065-V-Col13]
Length = 227
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ +++G +L+ E+L +I+ +K+ ++K +L F + + + L
Sbjct: 13 DRPREKMIREGFESLSDEELLAVIISTGSKKKNVIELSKEILDTF-SYEELLEIEVDELV 71
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIK-KFLTPGQPCLISVERHYPMKNANNFAYC 141
EI+ I A ++ +RI K K +T ++ K +F
Sbjct: 72 EIDGIKAAKATKIVASLQLGKRINDKVIKRKIKTITSSTDVYNYMKDSLRFKKKEHFVII 131
Query: 142 FSI--NII 147
N+I
Sbjct: 132 LLDSKNVI 139
>gi|16803589|ref|NP_465074.1| DNA repair protein RadC [Listeria monocytogenes EGD-e]
gi|47096713|ref|ZP_00234298.1| DNA repair protein RadC [Listeria monocytogenes str. 1/2a F6854]
gi|224499790|ref|ZP_03668139.1| DNA repair protein RadC [Listeria monocytogenes Finland 1988]
gi|224501511|ref|ZP_03669818.1| DNA repair protein RadC [Listeria monocytogenes FSL R2-561]
gi|254828216|ref|ZP_05232903.1| DNA repair protein RadC [Listeria monocytogenes FSL N3-165]
gi|254831950|ref|ZP_05236605.1| DNA repair protein RadC [Listeria monocytogenes 10403S]
gi|254898284|ref|ZP_05258208.1| DNA repair protein RadC [Listeria monocytogenes J0161]
gi|254912223|ref|ZP_05262235.1| DNA repair protein RadC [Listeria monocytogenes J2818]
gi|254936551|ref|ZP_05268248.1| DNA repair protein RadC [Listeria monocytogenes F6900]
gi|255026815|ref|ZP_05298801.1| DNA repair protein RadC [Listeria monocytogenes FSL J2-003]
gi|284801939|ref|YP_003413804.1| DNA repair protein RadC [Listeria monocytogenes 08-5578]
gi|284995081|ref|YP_003416849.1| DNA repair protein RadC [Listeria monocytogenes 08-5923]
gi|25009032|sp|Q8Y6Y2|Y1549_LISMO RecName: Full=UPF0758 protein lmo1549
gi|16410978|emb|CAC99627.1| lmo1549 [Listeria monocytogenes EGD-e]
gi|47014897|gb|EAL05845.1| DNA repair protein RadC [Listeria monocytogenes str. 1/2a F6854]
gi|258600605|gb|EEW13930.1| DNA repair protein RadC [Listeria monocytogenes FSL N3-165]
gi|258609145|gb|EEW21753.1| DNA repair protein RadC [Listeria monocytogenes F6900]
gi|284057501|gb|ADB68442.1| DNA repair protein RadC [Listeria monocytogenes 08-5578]
gi|284060548|gb|ADB71487.1| DNA repair protein RadC [Listeria monocytogenes 08-5923]
gi|293590197|gb|EFF98531.1| DNA repair protein RadC [Listeria monocytogenes J2818]
Length = 224
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 48/128 (37%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
I + + R++ G AL+ E++ LI+ + +IA ++ +F +G + A
Sbjct: 4 HEISENEKPREKLQNYGIEALSSSELVALIIETGTKNESVLTIANRIIMKFKNVGEMQYA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ Q +N IG A ++ +RI + + + + V
Sbjct: 64 SIEEFQLVNGIGIAKASKIMAAIELGRRISIVTEQEEVVVRCPEDAVKLVMPELAFLFQE 123
Query: 137 NFAYCFSI 144
+F F
Sbjct: 124 HFHCLFLN 131
>gi|229135299|ref|ZP_04264094.1| DNA repair protein radC [Bacillus cereus BDRD-ST196]
gi|228648168|gb|EEL04208.1| DNA repair protein radC [Bacillus cereus BDRD-ST196]
Length = 148
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 48/118 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + +++ +L F L + A L +
Sbjct: 27 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLTLSDNILHHFDGLRMLKDATLEEMM 86
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
I+ +G A +L +R+++ + + + + C + +F
Sbjct: 87 SIHGVGIAKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCASYMMEEMRFLQQEHFVC 144
>gi|225567950|ref|ZP_03776975.1| hypothetical protein CLOHYLEM_04023 [Clostridium hylemonae DSM
15053]
gi|225163238|gb|EEG75857.1| hypothetical protein CLOHYLEM_04023 [Clostridium hylemonae DSM
15053]
Length = 230
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 2/124 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV--FGAPLHL 80
R ++ ++G +L+ E+L ++L ++ ++A+ +L G + +
Sbjct: 14 ERPYEKCERRGAGSLSDVELLAVLLRTGTRGENALTLAQKILYHTGETGILSIHQFSIER 73
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L +I IGK A+++ +S ++R+ KA T + +
Sbjct: 74 LMQIKGIGKVKAVQISCISELAKRLAKACAGESLCFTRPETIAGYYMEDLRHEKQEQMKL 133
Query: 141 CFSI 144
Sbjct: 134 LMLN 137
>gi|310778318|ref|YP_003966651.1| DNA repair protein RadC [Ilyobacter polytropus DSM 2926]
gi|309747641|gb|ADO82303.1| DNA repair protein RadC [Ilyobacter polytropus DSM 2926]
Length = 225
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
IGH RLR+++++ G ++ YE LEL+L I RKD K +AK LLKRF TL GV AP
Sbjct: 5 IGHRKRLREKYIKGGYDSFLDYEKLELLLTYSIVRKDVKPVAKELLKRFKTLEGVMKAPF 64
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF--LTPGQPCLISVERHYPMKNAN 136
L +++ +G+ + LKL+S S+ I K ++S K ++ + L +
Sbjct: 65 DELFKVDGLGEGSVVFLKLISETSKDIFKGSYSKKDVTTISGTRDLLAFLRNDIGFSPIE 124
Query: 137 NFAYCFSI 144
F F
Sbjct: 125 EFKVIFLD 132
>gi|213963331|ref|ZP_03391587.1| DNA repair protein RadC [Capnocytophaga sputigena Capno]
gi|213953999|gb|EEB65325.1| DNA repair protein RadC [Capnocytophaga sputigena Capno]
Length = 221
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 46/123 (37%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAPLHLL 81
++ R++ + +G+ AL+ E+L ++L + ++++ +L +L + L L
Sbjct: 10 DKPREKMITQGKTALSNAELLAILLGSGSANESAVALSRRILASVGNSLTALGKQTLAQL 69
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
IG+ A+ + + +R + + + ++ F
Sbjct: 70 TTFKGIGEAKAITILAATEMGRRRAAETHEPQPKIEAPRHVFTLMQPLIGDLPHEEFWVL 129
Query: 142 FSI 144
+
Sbjct: 130 YLN 132
>gi|304439839|ref|ZP_07399733.1| DNA repair protein RadC [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371578|gb|EFM25190.1| DNA repair protein RadC [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 245
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 42/122 (34%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R +++ +GE +L+ E++ LI+ + + + LL + +G + +
Sbjct: 30 DRPQEKLFAEGEASLSNAELIALIIRTGTKEETAVELCQKLLNAYGGIGELTKLRPSDIM 89
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I G A + ++RI + K L + +F
Sbjct: 90 KIKGFGPSKAAMVSAALELARRISTVSKFEKLLLNNPMAIYEFLSPQMSHLPYESFRVLS 149
Query: 143 SI 144
Sbjct: 150 LD 151
>gi|256003755|ref|ZP_05428743.1| DNA repair protein RadC [Clostridium thermocellum DSM 2360]
gi|255992316|gb|EEU02410.1| DNA repair protein RadC [Clostridium thermocellum DSM 2360]
gi|316940493|gb|ADU74527.1| DNA repair protein RadC [Clostridium thermocellum DSM 1313]
Length = 224
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 62/127 (48%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH RL++RFL++G ++ +++LEL+LF IPRKDT +A LL R+ +L GVF A
Sbjct: 3 HEGHRKRLKERFLREGLDSFEQHQVLELLLFFSIPRKDTNELAHTLLNRYGSLSGVFEAD 62
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L IG+ A+ L L+ S+R L W K L + +N
Sbjct: 63 PKDLATTPGIGENSAILLSLIPHLSRRYLNDKWRDKPELNSSAKAGQYAISLFAGRNYEV 122
Query: 138 FAYCFSI 144
F
Sbjct: 123 FYVICLD 129
>gi|117923573|ref|YP_864190.1| DNA repair protein RadC [Magnetococcus sp. MC-1]
gi|117607329|gb|ABK42784.1| DNA repair protein RadC [Magnetococcus sp. MC-1]
Length = 241
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 8 KAPSKDSHLD-YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR 66
+ P K + + GH +RLR+RF Q+G + ++ILEL LF +PR+DT IA L++R
Sbjct: 4 ENPKKTTKTKLHGGHRDRLRNRFAQEGLDGFEDHQILELALFYALPRRDTNPIAHRLMQR 63
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILK-ANWSIKKFLTPGQPCLIS 125
F +L V A L + +G+ AL + ++ ++R A K L
Sbjct: 64 FGSLSAVMEADPVDLATVEGMGETAALFITMLPALTRRYQHDAATRNKTPLNRADNVRDY 123
Query: 126 VERHYPMKNANNFAYCFSI 144
+ + F
Sbjct: 124 LVPLMAGRTEEVFYVLCLD 142
>gi|329724695|gb|EGG61201.1| DNA repair protein RadC [Staphylococcus epidermidis VCU144]
Length = 226
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 2/128 (1%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H + R+R + G +L+ E+L ++L + IA LLK+ +T+ + ++ L
Sbjct: 9 HEKPRERLITYGAKSLSNVELLAILLNTGRKGFSSIDIANELLKQQSTIRDLKKLSINDL 68
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+I IG A+ L+ +RI + K +T + +F
Sbjct: 69 LKIKGIGLYKAVILQAAFELGERINSTSTFDKVQITHPSDVASLMMSTMKDLEQKHFVVL 128
Query: 142 FSI--NII 147
NI+
Sbjct: 129 LLNSKNIV 136
>gi|60680007|ref|YP_210151.1| putative DNA repair protein [Bacteroides fragilis NCTC 9343]
gi|265765155|ref|ZP_06093430.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|60491441|emb|CAH06191.1| putative DNA repair protein [Bacteroides fragilis NCTC 9343]
gi|263254539|gb|EEZ25973.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 230
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 36/129 (27%), Gaps = 1/129 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFG 75
+R R++ + KG AL+ E+L +++ + + + +L +
Sbjct: 9 KQWSKADRPREKMMTKGSEALSDAELLGILIGSGNTEESAVELMRRILATCDNNLNELGK 68
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ +G +L + +R ++ + +
Sbjct: 69 WEVRNFSSFKGMGPAKSLTIMAALELGKRRKLQESKEREQIRCSEDIYKLFHPLMCDLPQ 128
Query: 136 NNFAYCFSI 144
F
Sbjct: 129 EEFWILLLN 137
>gi|167618186|ref|ZP_02386817.1| DNA repair protein RadC [Burkholderia thailandensis Bt4]
Length = 209
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 42/116 (36%)
Query: 29 FLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIG 88
L +G AL+ E++ L+L +P D ++A LL RF +L + A + + IG
Sbjct: 1 MLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLTRFGSLRALLDAAPDDFKGLRGIG 60
Query: 89 KRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L V ++R L + + + + F F
Sbjct: 61 PARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCLFLD 116
>gi|125973275|ref|YP_001037185.1| DNA repair protein RadC [Clostridium thermocellum ATCC 27405]
gi|281417478|ref|ZP_06248498.1| DNA repair protein RadC [Clostridium thermocellum JW20]
gi|125713500|gb|ABN51992.1| DNA repair protein RadC [Clostridium thermocellum ATCC 27405]
gi|281408880|gb|EFB39138.1| DNA repair protein RadC [Clostridium thermocellum JW20]
Length = 223
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 62/127 (48%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH RL++RFL++G ++ +++LEL+LF IPRKDT +A LL R+ +L GVF A
Sbjct: 2 HEGHRKRLKERFLREGLDSFEQHQVLELLLFFSIPRKDTNELAHTLLNRYGSLSGVFEAD 61
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L IG+ A+ L L+ S+R L W K L + +N
Sbjct: 62 PKDLATTPGIGENSAILLSLIPHLSRRYLNDKWRDKPELNSSAKAGQYAISLFAGRNYEV 121
Query: 138 FAYCFSI 144
F
Sbjct: 122 FYVICLD 128
>gi|312898568|ref|ZP_07757958.1| putative DNA repair protein RadC [Megasphaera micronuciformis
F0359]
gi|310620487|gb|EFQ04057.1| putative DNA repair protein RadC [Megasphaera micronuciformis
F0359]
Length = 229
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 3/123 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA--TLGGVFGAPLHL 80
R R+RF G A++ ++L ++L + +++ +L+ + + +
Sbjct: 12 ERPRERFFHHGAAAVSDQDLLAILLRTGTKGQSVLDVSRCILRTLPEENIYYLGETDVRR 71
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWS-IKKFLTPGQPCLISVERHYPMKNANNFA 139
L + IG+ A+ L +RI + + + V F+
Sbjct: 72 LCTVKGIGRDKAVTLCAAIELGKRIARQRVKANARDFSSPSTVADYVMEDMRCLRQEKFS 131
Query: 140 YCF 142
+
Sbjct: 132 ALY 134
>gi|225378107|ref|ZP_03755328.1| hypothetical protein ROSEINA2194_03767 [Roseburia inulinivorans DSM
16841]
gi|225210108|gb|EEG92462.1| hypothetical protein ROSEINA2194_03767 [Roseburia inulinivorans DSM
16841]
Length = 230
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 1/129 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFG 75
+ R ++F + G AL+ E+L +++ + +A++ L + L ++
Sbjct: 8 KELPESERPYEKFWKYGATALSDAELLAIVIKSGSSKMTAVDVARSFLSQKDRNLMNLYE 67
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+++I+ IG +A++LK ++ S RI + +
Sbjct: 68 MSYDEMKKIHGIGDVIAMQLKCIAELSTRIANTRHFEGIQMRSAATVAEYYMEQLRHEQQ 127
Query: 136 NNFAYCFSI 144
C
Sbjct: 128 EKLIVCMFD 136
>gi|302871177|ref|YP_003839813.1| DNA repair protein RadC [Caldicellulosiruptor obsidiansis OB47]
gi|302574036|gb|ADL41827.1| DNA repair protein RadC [Caldicellulosiruptor obsidiansis OB47]
Length = 230
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH RL+ RF+++G + +++LEL+LF IPRKDT IA L+ F ++ VF A
Sbjct: 6 HEGHRERLKRRFIEQGLDGFEDHQVLELLLFFSIPRKDTNDIAHRLISTFGSISNVFEAH 65
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
LQ++N +G+ A+ + L+S S+R L L + ++ + +
Sbjct: 66 PKDLQKVNGVGENSAILISLISQISRRYLADKNRKTFQLRNVEVASEYIKSLFVGRKNEV 125
Query: 138 FAYCFSI---NIIF 148
F N+I+
Sbjct: 126 FYVICLDTQLNVIY 139
>gi|46907778|ref|YP_014167.1| DNA repair protein RadC [Listeria monocytogenes str. 4b F2365]
gi|47093084|ref|ZP_00230861.1| DNA repair protein RadC [Listeria monocytogenes str. 4b H7858]
gi|226224150|ref|YP_002758257.1| DNA repair protein RadC [Listeria monocytogenes Clip81459]
gi|254824392|ref|ZP_05229393.1| DNA repair protein RadC [Listeria monocytogenes FSL J1-194]
gi|254852174|ref|ZP_05241522.1| DNA repair protein RadC [Listeria monocytogenes FSL R2-503]
gi|254992662|ref|ZP_05274852.1| DNA repair protein RadC [Listeria monocytogenes FSL J2-064]
gi|255522562|ref|ZP_05389799.1| DNA repair protein RadC [Listeria monocytogenes FSL J1-175]
gi|300764784|ref|ZP_07074774.1| DNA repair protein RadC [Listeria monocytogenes FSL N1-017]
gi|54036226|sp|Q71ZC0|Y1569_LISMF RecName: Full=UPF0758 protein LMOf2365_1569
gi|259551878|sp|C1KVJ6|Y1560_LISMC RecName: Full=UPF0758 protein Lm4b_01560
gi|46881047|gb|AAT04344.1| DNA repair protein RadC [Listeria monocytogenes serotype 4b str.
F2365]
gi|47018524|gb|EAL09280.1| DNA repair protein RadC [Listeria monocytogenes str. 4b H7858]
gi|225876612|emb|CAS05321.1| Putative DNA repair protein RadC [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258605477|gb|EEW18085.1| DNA repair protein RadC [Listeria monocytogenes FSL R2-503]
gi|293593627|gb|EFG01388.1| DNA repair protein RadC [Listeria monocytogenes FSL J1-194]
gi|300514460|gb|EFK41517.1| DNA repair protein RadC [Listeria monocytogenes FSL N1-017]
gi|328465585|gb|EGF36814.1| hypothetical protein LM1816_06675 [Listeria monocytogenes 1816]
gi|328474908|gb|EGF45708.1| hypothetical protein LM220_12012 [Listeria monocytogenes 220]
Length = 224
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 48/128 (37%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
I + + R++ G AL+ E++ LI+ + +IA ++ +F +G + A
Sbjct: 4 HEISENEKPREKLQNYGIEALSSSELVALIIETGTKNESVLTIANRIIMKFKNVGEMQYA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ Q +N IG A ++ +RI + + + + V
Sbjct: 64 SIEEFQLVNGIGIAKASKIMAAIELGRRIGIVTEQEEVVVRCPEDAVKLVMPELAFLFQE 123
Query: 137 NFAYCFSI 144
+F F
Sbjct: 124 HFHCLFLN 131
>gi|251771587|gb|EES52163.1| DNA repair protein RadC [Leptospirillum ferrodiazotrophum]
Length = 232
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 47/134 (35%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ + R R++ + G +L E+L ++L + ++ + LL F +
Sbjct: 3 DGTPRVSEWPPYERPREKLVSMGAKSLNDSELLAILLRTGNRNESAVALGQRLLATFGGI 62
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
G+ + L + +G ++ +R+ + + ++ + G+ +
Sbjct: 63 PGLSRTVVAELSRVKGVGLAKGAQILAALELGRRMSERSLVPEESIRSGESVYRLLGPRL 122
Query: 131 PMKNANNFAYCFSI 144
+ +F
Sbjct: 123 REERKESFWVLLLD 136
>gi|206895219|ref|YP_002247779.1| DNA repair protein [Coprothermobacter proteolyticus DSM 5265]
gi|229485550|sp|B5Y6A0|Y1522_COPPD RecName: Full=UPF0758 protein COPRO5265_1522
gi|206737836|gb|ACI16914.1| DNA repair protein [Coprothermobacter proteolyticus DSM 5265]
Length = 235
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 4/126 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+ L KG L ++L +IL + + +A+ LL F G++ A + L
Sbjct: 17 ERPRELLLSKGPEHLPDAKLLAIILRTGNKEETAEDLARRLLNTFGGFTGLYRASVEELL 76
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI----SVERHYPMKNANNF 138
+I +GK A ++K +R L+ + +T + + + +F
Sbjct: 77 QIKGMGKAKAAQVKAALEIGKRFLQNETVEEARITTPEDAIEYAARYFSSMLMNEGKEHF 136
Query: 139 AYCFSI 144
Sbjct: 137 WILLLD 142
>gi|88606961|ref|YP_504859.1| DNA repair protein RadC [Anaplasma phagocytophilum HZ]
gi|88598024|gb|ABD43494.1| DNA repair protein RadC [Anaplasma phagocytophilum HZ]
Length = 232
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 61/139 (43%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M ++ + +GH RLR + L + + YE+LEL+L + R D K +AK L++
Sbjct: 1 MPESRDAERKRQQLGHRERLRQKILNGNGDGVFDYEVLELLLCSVRGRVDLKPVAKRLME 60
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF L V A ++ L+++ +G L V A R+++ N + L +
Sbjct: 61 RFGNLSQVLYADINELRKVKDMGDSSVAMLVCVREALIRVMRGNITSCVMLDKWPKLIDY 120
Query: 126 VERHYPMKNANNFAYCFSI 144
++ NF +
Sbjct: 121 LKVKIGNSTIENFLVLYLN 139
>gi|227538101|ref|ZP_03968150.1| DNA repair protein RadC [Sphingobacterium spiritivorum ATCC 33300]
gi|227242177|gb|EEI92192.1| DNA repair protein RadC [Sphingobacterium spiritivorum ATCC 33300]
Length = 229
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL-KRFATLGGVFGAP 77
+R R++ +G L+ E+L +++ +D +A+ +L L +
Sbjct: 9 WAETDRPREKLESRGRRVLSNAELLAILIGSGSFGEDAVGLARRILSDHQHNLDFLSQLD 68
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L++ IG A+ + +R ++ L + +
Sbjct: 69 VDDLKKYKGIGSAKAITIIAALELGRRRKESTEKEAVVLNCSKKVFEYFKFQLQDLLHEE 128
Query: 138 FAYCFSI 144
F +
Sbjct: 129 FWVLYLN 135
>gi|182419744|ref|ZP_02950984.1| DNA repair protein [Clostridium butyricum 5521]
gi|237666375|ref|ZP_04526360.1| DNA repair protein RadC [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376292|gb|EDT73874.1| DNA repair protein [Clostridium butyricum 5521]
gi|237657574|gb|EEP55129.1| DNA repair protein RadC [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 229
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 1/120 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R +++ L G L E+L +IL + ++ ++ +L F L G+ A + +
Sbjct: 14 ERPKEKLLTYGAETLNNSELLAIILGSGVKGENAIELSNRILNEFDDLDGILTADYNEII 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
IN I A ++ +S +R +T + + N
Sbjct: 74 SINGIKSGKASQIMALSELFKRFRTLRAGKRNIKITSPKDLADLLMGEMSYLNQEVLKVI 133
>gi|254251634|ref|ZP_04944952.1| DNA repair protein RadC [Burkholderia dolosa AUO158]
gi|124894243|gb|EAY68123.1| DNA repair protein RadC [Burkholderia dolosa AUO158]
Length = 258
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 1/121 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAPLHLLQE 83
R+R L++G AL E++ L+L +D A+ALL RF L G+ A +
Sbjct: 45 PRERLLERGPGALTDAELVALLLGTGSRGQDVFVSARALLDRFGGSLRGMLDAAPAEFET 104
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
IG A L V+ ++R L + + + + F +
Sbjct: 105 HPGIGAARAALLIAVTELARRALAEEVDERLRIGSPGAVEDFLRLKIGTREHEVFVTLYL 164
Query: 144 I 144
Sbjct: 165 D 165
>gi|312892247|ref|ZP_07751743.1| DNA replication and repair protein RadC [Mucilaginibacter paludis
DSM 18603]
gi|311295222|gb|EFQ72395.1| DNA replication and repair protein RadC [Mucilaginibacter paludis
DSM 18603]
Length = 232
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 41/127 (32%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAP 77
+R R++ + +G L E++ +++ + ++K +L + L + A
Sbjct: 13 WAEEDRPREKLIGQGRRNLTDAELIAILIGSGSRDESAVELSKRILHHYKNDLNALGKAS 72
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L + IG+ A+ + +R + + + N
Sbjct: 73 VAELCKFKGIGEAKAISIVAALELGRRRDDTEVKAIEKIGSSRDAYQLFYPLLADLNHEE 132
Query: 138 FAYCFSI 144
F
Sbjct: 133 FWIMLMN 139
>gi|312134462|ref|YP_004001800.1| DNA repair protein radc [Caldicellulosiruptor owensensis OL]
gi|311774513|gb|ADQ04000.1| DNA repair protein RadC [Caldicellulosiruptor owensensis OL]
Length = 230
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH RL+ RF+++G + +++LEL+LF IPR+DT +A L+ F ++ VF A
Sbjct: 6 HEGHRERLKRRFIEQGLDGFEDHQVLELLLFFSIPRRDTNDVAHRLISTFGSISNVFEAH 65
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
LQ++N IGK A+ + L+S S+R L L + ++ + +
Sbjct: 66 PEDLQKVNGIGKNSAILISLISQISRRYLADKNRKTFQLRNVEVAAEYIKSLFVGRKNEV 125
Query: 138 FAYCFSI---NIIF 148
F N+I+
Sbjct: 126 FYVICLDTQLNVIY 139
>gi|253564158|ref|ZP_04841615.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251947934|gb|EES88216.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|301161548|emb|CBW21088.1| putative DNA repair protein [Bacteroides fragilis 638R]
Length = 230
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 36/129 (27%), Gaps = 1/129 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFG 75
+R R++ + KG AL+ E+L +++ + + + +L +
Sbjct: 9 KQWSKADRPREKMMTKGSEALSDAELLGILIGSGNTEESAVELMRRILATCDNNLNELGK 68
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ +G +L + +R ++ + +
Sbjct: 69 WEVRNFSSFKGMGPAKSLTIMAALELGKRRKLQESKEREQIRCSEDIYKLFHPLMCDLPQ 128
Query: 136 NNFAYCFSI 144
F
Sbjct: 129 EEFWILLLN 137
>gi|210612724|ref|ZP_03289439.1| hypothetical protein CLONEX_01641 [Clostridium nexile DSM 1787]
gi|210151417|gb|EEA82425.1| hypothetical protein CLONEX_01641 [Clostridium nexile DSM 1787]
Length = 232
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 4/128 (3%)
Query: 21 HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL----KRFATLGGVFGA 76
R ++ L+ G L+ E+L ++L ++ +A+ +L + + V
Sbjct: 12 EDERPYEKCLRYGVENLSNAELLAVLLRTGTRGTNSLEMARNILRTSEQEEDNILAVHQL 71
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L+ I IG A ++ +S ++R+ KA+ T +
Sbjct: 72 TMEKLKAIKGIGTVKATQILCLSELAKRLSKASVKESLIFTSPSTIADYYMEDLRHRKQE 131
Query: 137 NFAYCFSI 144
+
Sbjct: 132 HMKLLMLN 139
>gi|169831623|ref|YP_001717605.1| DNA repair protein RadC [Candidatus Desulforudis audaxviator
MP104C]
gi|229485551|sp|B1I4S0|Y1467_DESAP RecName: Full=UPF0758 protein Daud_1467
gi|169638467|gb|ACA59973.1| DNA repair protein RadC [Candidatus Desulforudis audaxviator
MP104C]
Length = 230
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 43/121 (35%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R G +L+ E+L ++L +A +L RF L G+ A + LQ
Sbjct: 17 RPRERLAAHGVQSLSDAELLAILLRSGTVTTTAIDLANQILSRFGGLRGLAEAGIEELQA 76
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G + E++ +R + + + V + +F
Sbjct: 77 VKGVGPAKSAEVRAAFELGRRAACRPGEWQPTVRTPEEAAGLVMEEMRYFDREHFWALVL 136
Query: 144 I 144
Sbjct: 137 N 137
>gi|83858758|ref|ZP_00952280.1| DNA repair protein [Oceanicaulis alexandrii HTCC2633]
gi|83853581|gb|EAP91433.1| DNA repair protein [Oceanicaulis alexandrii HTCC2633]
Length = 213
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 63/120 (52%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
+R RF + G LA YE+LEL LFR IPR+D K +AKAL+ RF LGGV A LH L+E+
Sbjct: 1 MRARFAEAGGPGLADYELLELALFRSIPRRDVKPLAKALIARFGGLGGVCAADLHQLKEV 60
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ ++ AL+LKL+ + R+ + + L+ L + F +
Sbjct: 61 KGVSEKTALDLKLIEALAVRMAREQVVGRPILSSWSALLDYLRTALQHAATEQFRVLYLD 120
>gi|300714649|ref|YP_003739452.1| DNA repair protein RadC [Erwinia billingiae Eb661]
gi|299060485|emb|CAX57592.1| DNA repair protein RadC [Erwinia billingiae Eb661]
Length = 222
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 1/122 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L KG AL E+L L L ++A+ L+ F +L + A +
Sbjct: 9 PREKLLVKGVEALNDTELLALFLRTGSGGVHVMALAQQLIGTFGSLYHLMTADRTAFDRV 68
Query: 85 NRIGKRVALELKLVSVASQRILKA-NWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
IG ++ ++ ++R + ++ L + F F
Sbjct: 69 KGIGDAKYTQINAIAELARRFFSSIPVQERQLAGGTADMLTFFISQLAHREREIFMVAFL 128
Query: 144 IN 145
N
Sbjct: 129 DN 130
>gi|193212294|ref|YP_001998247.1| DNA repair protein RadC [Chlorobaculum parvum NCIB 8327]
gi|229485546|sp|B3QM94|Y627_CHLP8 RecName: Full=UPF0758 protein Cpar_0627
gi|193085771|gb|ACF11047.1| DNA repair protein RadC [Chlorobaculum parvum NCIB 8327]
Length = 222
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ I NR R+RFL+ G+ AL+ E+L LIL P + L+ +L G+
Sbjct: 2 RIHDIDPDNRPRERFLRSGKEALSPAELLALILRSGTPNLNIIDTCNQLIAEH-SLEGLA 60
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
LH LQ+I IG+ A+++ V +RI A + + Q ++ P ++
Sbjct: 61 DLSLHELQKIPGIGQAKAMQIAAVFELHRRIRFAKNINR-KIQGAQDVFEYMQGRIPDES 119
Query: 135 ANNFAYCFSI 144
+ F
Sbjct: 120 KEHLFVLFLN 129
>gi|189464342|ref|ZP_03013127.1| hypothetical protein BACINT_00683 [Bacteroides intestinalis DSM
17393]
gi|189438132|gb|EDV07117.1| hypothetical protein BACINT_00683 [Bacteroides intestinalis DSM
17393]
Length = 228
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 36/127 (28%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAP 77
+R R++ + KG AL+ E+L +++ + S+ + +L L +
Sbjct: 9 WAEEDRPREKMMLKGAEALSDAELLAILIGSGNTEESAVSLMQRVLSACSNDLNQLGKWE 68
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ G ++ + +R + + +
Sbjct: 69 VQDFSRFKGFGPAKSITIMAALELGKRRKLQERPERTTIRSSKDIYEIFHPLLCDLAHEE 128
Query: 138 FAYCFSI 144
F
Sbjct: 129 FWVLLLN 135
>gi|146295826|ref|YP_001179597.1| DNA repair protein RadC [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145409402|gb|ABP66406.1| DNA repair protein RadC [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 230
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH RL+ RF+++G ++ +++LEL+LF IPR+DT IA L+ F ++ VF A
Sbjct: 6 HEGHRQRLKRRFVEEGLDSFEDHQVLELLLFFSIPRRDTNEIAHRLISTFGSISNVFEAH 65
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
LQ++ +G+ A+ + L+S ++R L L + ++ + +
Sbjct: 66 PKELQKVEGVGENSAILISLISQIARRYLADKTRKTFQLKNVEVAAEYIKSLFVGRKNEV 125
Query: 138 FAYCFSI---NII 147
F N+I
Sbjct: 126 FYVICLDTQLNVI 138
>gi|218290834|ref|ZP_03494903.1| DNA repair protein RadC [Alicyclobacillus acidocaldarius LAA1]
gi|218239192|gb|EED06393.1| DNA repair protein RadC [Alicyclobacillus acidocaldarius LAA1]
Length = 233
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G +AL E+L I+ +++ IA++L + L + + L +
Sbjct: 17 PRERLMRLGPSALRVDELLACIMQSGNGKQNVYEIAQSLCRHLGDLDRLADLEVAELLSV 76
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A+++ +R+ + K+ + + V +F
Sbjct: 77 PGIGPAKAIQIAAAVELGRRVARKPPGEKRQIRTAEDAAKYVMDRLRYLKKEHFVTLLLD 136
>gi|290893950|ref|ZP_06556926.1| DNA repair protein RadC [Listeria monocytogenes FSL J2-071]
gi|290556488|gb|EFD90026.1| DNA repair protein RadC [Listeria monocytogenes FSL J2-071]
gi|313608630|gb|EFR84484.1| putative DNA repair protein [Listeria monocytogenes FSL F2-208]
Length = 224
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 46/122 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R++ L G +L+ E++ LI+ + +IA ++ +F + + A + Q
Sbjct: 10 EKPREKLLNYGIESLSSSELVALIIETGTKNESVLTIANRIIMKFKNVAEMQYASIEEFQ 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+N IG A ++ +RI + + + + V +F F
Sbjct: 70 LVNGIGIAKASKIMAAIELGKRISIVTEQEEVVVRCPEDAVKLVMPELAFLFQEHFHCLF 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|296328881|ref|ZP_06871392.1| DNA repair protein RadC [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|296154002|gb|EFG94809.1| DNA repair protein RadC [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 232
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
S D GH R+R++FL G + A YEILEL+L IPRKDTK IAK LL +F +L V
Sbjct: 2 SEKDNQGHRERIREKFLNNGIDGFAEYEILELLLTYCIPRKDTKPIAKELLNKFKSLDNV 61
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANW-------SIKKFLTPGQPCLISV 126
F A L I+ +GK LKL+ I K ++ L +
Sbjct: 62 FKASFDKLSAIDGLGKNSITFLKLLGELPSIIYKDELKNKKLIDKETLKISNKDILLKYL 121
Query: 127 ERHYPMKNANNFAYCFS 143
+ F +
Sbjct: 122 RNKIGYEEIEKFYVIYL 138
>gi|196230018|ref|ZP_03128881.1| DNA repair protein RadC [Chthoniobacter flavus Ellin428]
gi|196225615|gb|EDY20122.1| DNA repair protein RadC [Chthoniobacter flavus Ellin428]
Length = 231
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
+ + +R R++ +G AL+ E++ ++L +P + +A+ LL F +L
Sbjct: 2 ATLRIHELPEQDRPREKLAAQGAGALSDSELIAILLRTGLPGANAVDVARKLLAEFKSLS 61
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
G+ + L +I +G A++L + R+ + + + L + +
Sbjct: 62 GLARCSVKELSKIKGVGPAKAVQLVAAFGLASRLARETLAR-QRLDSPELINDLLGPEMR 120
Query: 132 MKNANNFAYCFSI 144
+
Sbjct: 121 ALGRESLRLVLLD 133
>gi|217964304|ref|YP_002349982.1| RadC [Listeria monocytogenes HCC23]
gi|254789655|sp|B8DHJ9|Y1020_LISMH RecName: Full=UPF0758 protein LMHCC_1020
gi|217333574|gb|ACK39368.1| RadC [Listeria monocytogenes HCC23]
gi|307571130|emb|CAR84309.1| DNA repair protein [Listeria monocytogenes L99]
Length = 224
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 46/122 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R++ L G +L+ E++ LI+ + +IA ++ +F + + A + Q
Sbjct: 10 EKPREKLLNYGIESLSSSELVALIIETGTKNESVLTIANRIIMKFKNVAEMQYASIEEFQ 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+N IG A ++ +RI + + + + V +F F
Sbjct: 70 LVNGIGVAKASKIMAAIELGKRISIVTEQEEVVVRCPEDAVKLVMPELAFLFQEHFHCLF 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|189423594|ref|YP_001950771.1| DNA repair protein RadC [Geobacter lovleyi SZ]
gi|254789653|sp|B3E339|Y523_GEOLS RecName: Full=UPF0758 protein Glov_0523
gi|189419853|gb|ACD94251.1| DNA repair protein RadC [Geobacter lovleyi SZ]
Length = 230
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 3/136 (2%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRL--IPRKDTKSIAKALLKRF-A 68
++ + R R++ L++G AL+ E+L L+L K + + LL+RF
Sbjct: 2 SNNAIKDWPEDERPREKLLKRGAAALSDAELLALVLRTGDAAAGKSAIDLGRELLERFDG 61
Query: 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
L + A L+ LQ+I +G A +K +R + T
Sbjct: 62 NLRELAQAELNELQQIKGLGLAKAASIKAAFTLGKRFQARRLETLERFTSPAQVFDFFHH 121
Query: 129 HYPMKNANNFAYCFSI 144
F
Sbjct: 122 ELRDNRKELFLTLLLD 137
>gi|258511792|ref|YP_003185226.1| DNA repair protein RadC [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478518|gb|ACV58837.1| DNA repair protein RadC [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 233
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G +AL E+L I+ +++ IA++L + L + + L +
Sbjct: 17 PRERLMRLGPSALRVDELLACIMQSGNGKQNVYEIAQSLCRHLGDLDRLADLEVAELLSV 76
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A+++ +R+ + K+ + + V +F
Sbjct: 77 PGIGPAKAVQIAAAVELGRRVARKPPGEKRQIRTAEDAAKYVMDRLRYLKKEHFVTLLLD 136
>gi|302875597|ref|YP_003844230.1| DNA repair protein RadC [Clostridium cellulovorans 743B]
gi|307690127|ref|ZP_07632573.1| DNA repair protein RadC [Clostridium cellulovorans 743B]
gi|302578454|gb|ADL52466.1| DNA repair protein RadC [Clostridium cellulovorans 743B]
Length = 228
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 49/130 (37%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + + R R+R L G L+ E+L +IL ++ S++ ++++ + G+
Sbjct: 6 KVKDLPENERPRERLLLYGAETLSNSELLAVILGNGSREENAISLSSRIIQKSGGINGLL 65
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
L I IG+ ++ ++ ++R K +T + + + + +
Sbjct: 66 TQGTEELLAIRGIGRAKCAQIIALTEIAKRFNGFKSGDKYKITCPKDAANLMIKDMSLLS 125
Query: 135 ANNFAYCFSI 144
Sbjct: 126 KEVLRIIMLN 135
>gi|163791281|ref|ZP_02185695.1| DNA repair protein RadC [Carnobacterium sp. AT7]
gi|159873422|gb|EDP67512.1| DNA repair protein RadC [Carnobacterium sp. AT7]
Length = 230
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 47/121 (38%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R GE ALA +E+L ++L + ++A +L F L + A L
Sbjct: 17 RPRERLELYGEKALANHELLAILLRTGTKGTNVVTLAMVMLNHFEDLYHLKTASSQELMT 76
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I+ IGK ALELK RI +A+ +T + N +
Sbjct: 77 ISGIGKVKALELKAAIEIGVRISQASQIKIGQITSSTKAGEMLLVEMQGLQQENVVVLYL 136
Query: 144 I 144
Sbjct: 137 N 137
>gi|150003115|ref|YP_001297859.1| putative DNA repair protein [Bacteroides vulgatus ATCC 8482]
gi|149931539|gb|ABR38237.1| putative DNA repair protein [Bacteroides vulgatus ATCC 8482]
Length = 229
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 37/127 (29%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL-KRFATLGGVFGAP 77
+R R++ + G L+ E+L +++ + + +L +L +
Sbjct: 10 WAEEDRPREKMMLHGVGTLSDAELLAILIGSGNTEDSAVELMRKVLSDYHNSLNELGKTT 69
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L IG A+ + S +R + +K + +
Sbjct: 70 VDELCHYKGIGPAKAITILAASELGKRRKEEEGKERKVILSSRDVYQYFYPLMCDLPTEE 129
Query: 138 FAYCFSI 144
Sbjct: 130 CWVLLLN 136
>gi|325661600|ref|ZP_08150224.1| hypothetical protein HMPREF0490_00958 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331084842|ref|ZP_08333930.1| hypothetical protein HMPREF0987_00233 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325472127|gb|EGC75341.1| hypothetical protein HMPREF0490_00958 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410936|gb|EGG90358.1| hypothetical protein HMPREF0987_00233 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 231
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR---FATLGGVFGAPLH 79
R ++ Q G L E+L ++L +A+ +L + + +
Sbjct: 14 ERPYEKCEQYGAGNLTDVELLAILLRTGTKGHSVLELARKILYPVYWQDGILNIHHWTME 73
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L +I IGK A+++ +S ++R+ KA+ + +
Sbjct: 74 QLMQIKGIGKIKAIQILCLSELAKRLSKADAYQGLDFRTPSSIAEYYMEDMRHRTQEHMK 133
Query: 140 YCFSI 144
Sbjct: 134 LLMLN 138
>gi|268318025|ref|YP_003291744.1| DNA repair protein RadC [Rhodothermus marinus DSM 4252]
gi|262335559|gb|ACY49356.1| DNA repair protein RadC [Rhodothermus marinus DSM 4252]
Length = 245
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 4/130 (3%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRK----DTKSIAKALLKRFATLGGVF 74
+R R++ +++G +AL+ E++ LI K + +AL++ + +L +
Sbjct: 22 WDEADRPREKLMRRGPSALSDAELIALIFGSGTRTKQGSISAVQLGQALIRAYGSLYALA 81
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
L L + +G A++L +R+ + +
Sbjct: 82 QRDLKELTRVAGVGPAKAVQLVAAFEIGRRVEAQRPGRRIQVRTPADVAACYGPLLRDLK 141
Query: 135 ANNFAYCFSI 144
F
Sbjct: 142 REVFKIVLLN 151
>gi|225164735|ref|ZP_03726969.1| DNA repair protein-like protein [Opitutaceae bacterium TAV2]
gi|224800656|gb|EEG19018.1| DNA repair protein-like protein [Opitutaceae bacterium TAV2]
Length = 246
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 43/122 (35%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R ++R + G +L+ E+L ++L D ++A L++ +L G+ +
Sbjct: 25 ERPQERLARLGPASLSDTELLAMLLRSGTRGHDVITLATRLIQAAGSLHGLTRWVGADFR 84
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ IG AL+L V ++RIL L G +
Sbjct: 85 RMRGIGPVKALQLVTVMEVARRILFQGMGEAPELNDGAAVAAYMRPQLQGLTVEKCWVLC 144
Query: 143 SI 144
Sbjct: 145 LN 146
>gi|254931489|ref|ZP_05264848.1| DNA repair protein RadC [Listeria monocytogenes HPB2262]
gi|293583041|gb|EFF95073.1| DNA repair protein RadC [Listeria monocytogenes HPB2262]
Length = 185
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 48/128 (37%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
I + + R++ G AL+ E++ LI+ + +IA ++ +F +G + A
Sbjct: 4 HEISENEKPREKLQNYGIEALSSSELVALIIETGTKNESVLTIANRIIMKFKNVGEMQYA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ Q +N IG A ++ +RI + + + + V
Sbjct: 64 SIEEFQLVNGIGIAKASKIMAAIELGRRIGIVTEQEEVVVRCPEDAVKLVMPELAFLFQE 123
Query: 137 NFAYCFSI 144
+F F
Sbjct: 124 HFHCLFLN 131
>gi|57234651|ref|YP_181315.1| RadC family DNA repair protein [Dehalococcoides ethenogenes 195]
gi|57225099|gb|AAW40156.1| DNA repair protein, RadC family [Dehalococcoides ethenogenes 195]
Length = 222
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 44/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R G L+ E+L +IL R + + A+ LL F G+ A + L
Sbjct: 8 ERPRERLQSLGAGVLSSAELLAVILGRGVAGEPVLQSAQRLLTHFGGPSGIASASVEELL 67
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG A +LK ++R + + + + + +F
Sbjct: 68 KLKGIGLAKACQLKAAFELAKRAGGIKAEYQPCIKTPEDVFQIIYPLVCDEKKEHFFCLM 127
Query: 143 SI 144
Sbjct: 128 LD 129
>gi|167844668|ref|ZP_02470176.1| DNA repair protein RadC [Burkholderia pseudomallei B7210]
Length = 208
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 42/115 (36%)
Query: 30 LQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGK 89
L +G AL+ E++ L+L +P D ++A LL RF +L + A + + IG
Sbjct: 1 LARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDFKGLRGIGP 60
Query: 90 RVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L V ++R L + + + + F F
Sbjct: 61 ARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCLFLD 115
>gi|82751250|ref|YP_416991.1| DNA repair protein RadC [Staphylococcus aureus RF122]
gi|123547872|sp|Q2YT78|Y1521_STAAB RecName: Full=UPF0758 protein SAB1521c
gi|82656781|emb|CAI81210.1| DNA repair protein homolog [Staphylococcus aureus RF122]
Length = 228
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFLSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 QVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI--NII 147
N++
Sbjct: 130 LNSKNVV 136
>gi|224370717|ref|YP_002604881.1| RadC3 [Desulfobacterium autotrophicum HRM2]
gi|223693434|gb|ACN16717.1| RadC3 [Desulfobacterium autotrophicum HRM2]
Length = 279
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 58/128 (45%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
GH +RL+ RFL G + YE++EL+L PRKD K AKALL RF TL GVF A
Sbjct: 47 SNTGHRSRLKQRFLANGISGFLDYEVIELLLTLNTPRKDCKPSAKALLDRFKTLQGVFEA 106
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +N +G L +KL+ S R L+ K L + +
Sbjct: 107 SVEELCRVNGVGPSNVLGIKLIKAVSDRYLEQRIRSKTVLKNSHDLCAFLGHAIGHRPRE 166
Query: 137 NFAYCFSI 144
F F
Sbjct: 167 VFVGIFLD 174
>gi|124516759|gb|EAY58267.1| DNA repair protein (RadC) [Leptospirillum rubarum]
Length = 237
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 4/137 (2%)
Query: 12 KDSHLDY----IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
K+ Y +R R+R +G AL E+L ++L + + ++A+ LL ++
Sbjct: 2 KERETHYCVREWSEGDRPRERLRDRGPAALHDAELLAILLRVGNRGESSVALAQRLLAKY 61
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
L GV A L ++ +G A ++ +R+ S + + + +
Sbjct: 62 GGLEGVAAAGFSALSSLSGMGLAKAAQIMAGIELGRRVSGKARSFRPEIRSARDVYDILG 121
Query: 128 RHYPMKNANNFAYCFSI 144
+ +F
Sbjct: 122 ARLRDEKKESFWVLLLD 138
>gi|282911289|ref|ZP_06319091.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282324984|gb|EFB55294.1| DNA repair protein RadC [Staphylococcus aureus subsp. aureus
WBG10049]
Length = 134
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 47/122 (38%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R L G +L+ E+L +++ + I+ LLK + L + + ++ L
Sbjct: 10 EMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG + A+ LK +R+ + + + +T + +F
Sbjct: 70 QVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILL 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|302345924|ref|YP_003814277.1| DNA repair protein RadC [Prevotella melaninogenica ATCC 25845]
gi|302149303|gb|ADK95565.1| DNA repair protein RadC [Prevotella melaninogenica ATCC 25845]
Length = 228
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 1/126 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFG 75
+ +R R++ + G AL+ E+L +++ P++ + K +L +
Sbjct: 7 SHWAEADRPREKLERLGAAALSDAELLAILIGSGTPKESAVDLMKRILNDCNNNLNTLGK 66
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L++ IG A+ + +R KA L + + +
Sbjct: 67 LSIRDLEQYKGIGSAKAITILAACELGKRRQKATVEEAPILNSAENIYQFMHTTIQDLDI 126
Query: 136 NNFAYC 141
Sbjct: 127 EEGWVL 132
>gi|228967555|ref|ZP_04128581.1| DNA repair protein radC [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228792134|gb|EEM39710.1| DNA repair protein radC [Bacillus thuringiensis serovar sotto str.
T04001]
Length = 132
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 48/118 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L +G +L+ E+L ++L + ++ +L +F L + A L L
Sbjct: 11 EQPRERLLLEGAGSLSNRELLAVLLRTGSKEETVLKLSDKILHQFDGLRMLKDATLEELI 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
I+ IG A +L +R+++ + + + + C + +F
Sbjct: 71 SIHGIGISKASQLMAAFELGRRMVRLEYQNRYSIRSPEDCAKYMMEEMRFLQQEHFVC 128
>gi|255009935|ref|ZP_05282061.1| putative DNA repair protein [Bacteroides fragilis 3_1_12]
gi|313147722|ref|ZP_07809915.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313136489|gb|EFR53849.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 231
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 13/127 (10%), Positives = 36/127 (28%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAP 77
+R R++ + KG AL+ E+L +++ + + + +L +
Sbjct: 12 WSKADRPREKMMAKGAEALSNAELLGILIGSGNTEESAVELMRRVLASCDNNLNELGKWE 71
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ +G +L + +R ++ + +
Sbjct: 72 VRDFSSFKGMGPAKSLTIMAALELGKRRKLQESKEREQVRCSEDIYRLFHPLMCDLPQEE 131
Query: 138 FAYCFSI 144
F
Sbjct: 132 FWILLLN 138
>gi|153811312|ref|ZP_01963980.1| hypothetical protein RUMOBE_01704 [Ruminococcus obeum ATCC 29174]
gi|149832439|gb|EDM87523.1| hypothetical protein RUMOBE_01704 [Ruminococcus obeum ATCC 29174]
Length = 236
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 5/134 (3%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-----ATLG 71
I R ++ +++GEN L+ E+L +IL ++ ++A +L L
Sbjct: 6 KEIPESQRPYEKCIREGENTLSDSELLAVILRCGTRGMNSLTLANDILSHMEQSPYPGLL 65
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
G+ + L++I+ IG A++LK + S+RI I
Sbjct: 66 GLLHCSVSDLKKIHGIGTVKAVQLKCIGELSKRIASTAARISLDFNSPDSIAAYYMEQLR 125
Query: 132 MKNANNFAYCFSIN 145
+ N
Sbjct: 126 HQEQEIMICMMLDN 139
>gi|167764281|ref|ZP_02436408.1| hypothetical protein BACSTE_02666 [Bacteroides stercoris ATCC
43183]
gi|167698397|gb|EDS14976.1| hypothetical protein BACSTE_02666 [Bacteroides stercoris ATCC
43183]
Length = 237
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 38/123 (30%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAPLHLL 81
+R R++ + KG AL+ E+L +++ + ++ + L L + +H
Sbjct: 22 DRPREKMMLKGAEALSDAELLAILIGSGNTEESAVALMQRTLACCNNDLNRLGKWEVHDF 81
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
IG ++ + +R + S + + F
Sbjct: 82 SRFKGIGPAKSVTIMAALELGKRRNRQERSERVAIHSSDDIYGIFHPLLCDLTVEEFWVL 141
Query: 142 FSI 144
Sbjct: 142 LLN 144
>gi|56417029|ref|YP_154103.1| DNA repair protein [Anaplasma marginale str. St. Maries]
gi|222475397|ref|YP_002563814.1| DNA repair protein (radC) [Anaplasma marginale str. Florida]
gi|255003383|ref|ZP_05278347.1| DNA repair protein (radC) [Anaplasma marginale str. Puerto Rico]
gi|255004504|ref|ZP_05279305.1| DNA repair protein (radC) [Anaplasma marginale str. Virginia]
gi|56388261|gb|AAV86848.1| DNA repair protein [Anaplasma marginale str. St. Maries]
gi|222419535|gb|ACM49558.1| DNA repair protein (radC) [Anaplasma marginale str. Florida]
Length = 230
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 50/125 (40%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR+R + L YEILELIL R D K IAK L+ F TL V A +
Sbjct: 13 GHRARLRERLISGEGVGLLDYEILELILCSARSRVDLKPIAKQLIAEFGTLSKVIYADVA 72
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L+ + +G+ + V A R LK + Q L + + N
Sbjct: 73 KLKRVKGVGESSVAAILCVREAVIRTLKGEMKYGVVVNEWQKLLDYLRVKIGNSSVENLC 132
Query: 140 YCFSI 144
+
Sbjct: 133 VLYLN 137
>gi|54298489|ref|YP_124858.1| DNA repair protein RadC [Legionella pneumophila str. Paris]
gi|81369883|sp|Q5X240|Y2553_LEGPA RecName: Full=UPF0758 protein lpp2553
gi|53752274|emb|CAH13706.1| DNA repair protein RadC [Legionella pneumophila str. Paris]
Length = 227
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
LR++ L G ++L+ E+L + + RK +A L K L + A L + I
Sbjct: 12 LREKLLTNGVHSLSDIELLAIFISSGNNRKSCLQLAYELTKHLGNLRNILNADLQSFKSI 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +G+ +L+ R + + L+ Q +++ FA F
Sbjct: 72 HGLGEVRYAQLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|182414800|ref|YP_001819866.1| DNA repair protein RadC [Opitutus terrae PB90-1]
gi|177842014|gb|ACB76266.1| DNA repair protein RadC [Opitutus terrae PB90-1]
Length = 199
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R ++R Q G AL+ E+L ++L +D ++A L+ +L G+ +
Sbjct: 5 DRPQERLEQFGPTALSDTELLAMLLRSGTHGQDVLTLATRLIAEAGSLAGLIAWKESDFR 64
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ IG+ AL+L V ++R+L L + F
Sbjct: 65 RLKGIGRVKALQLVTVVEIAKRVLIQKSEESPVLNRADLVADHLFPLARGLQVEKFWVLC 124
Query: 143 SI 144
Sbjct: 125 LN 126
>gi|294775858|ref|ZP_06741357.1| DNA repair protein RadC [Bacteroides vulgatus PC510]
gi|294450227|gb|EFG18728.1| DNA repair protein RadC [Bacteroides vulgatus PC510]
Length = 229
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 37/127 (29%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL-KRFATLGGVFGAP 77
+R R++ + G L+ E+L +++ + + +L +L +
Sbjct: 10 WAEEDRPREKMMLHGVGTLSDAELLAILIGSGNTEDSAVELMRKVLSDYHNSLNELGKTT 69
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L IG A+ + S +R + +K + +
Sbjct: 70 VDELCHYKGIGPAKAITILAASELGKRRKEEEGKERKVILSSRDVYQYFYPLMCDLPTEE 129
Query: 138 FAYCFSI 144
Sbjct: 130 CWVLLLN 136
>gi|307269918|ref|ZP_07551244.1| DNA repair protein RadC family protein [Enterococcus faecalis
TX4248]
gi|312899721|ref|ZP_07759044.1| DNA repair protein RadC family protein [Enterococcus faecalis
TX0470]
gi|306513708|gb|EFM82314.1| DNA repair protein RadC family protein [Enterococcus faecalis
TX4248]
gi|311293153|gb|EFQ71709.1| DNA repair protein RadC family protein [Enterococcus faecalis
TX0470]
Length = 181
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 25 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 84
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 85 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 144
>gi|254882396|ref|ZP_05255106.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319640551|ref|ZP_07995271.1| DNA repair protein [Bacteroides sp. 3_1_40A]
gi|254835189|gb|EET15498.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317387828|gb|EFV68687.1| DNA repair protein [Bacteroides sp. 3_1_40A]
Length = 229
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 37/127 (29%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL-KRFATLGGVFGAP 77
+R R++ + G L+ E+L +++ + + +L +L +
Sbjct: 10 WAEEDRPREKMMLHGVGTLSDAELLAILIGSGNTEDSAVELMRKVLSDYHNSLNELGKTT 69
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L IG A+ + S +R + +K + +
Sbjct: 70 VDELCHYKGIGPAKAITILAASELGKRRKEEEGKERKVILSSRDVYQYFYPLMCDLPTEE 129
Query: 138 FAYCFSI 144
Sbjct: 130 CWVLLLN 136
>gi|331001793|ref|ZP_08325315.1| hypothetical protein HMPREF0491_00177 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412767|gb|EGG92150.1| hypothetical protein HMPREF0491_00177 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 229
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 4/134 (2%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA---TLG 71
+ + R DR L+ G +L E+L ++L + ++A +L+ +
Sbjct: 3 KIKELPPEQRPYDRALEYGVESLTDVELLAVLLRSGTKDINVVNLAYKILEGNGEGFGIH 62
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRIL-KANWSIKKFLTPGQPCLISVERHY 130
+F + L I IGK A+++ + +R + N + + + +
Sbjct: 63 SIFHHNIDNLLGIKGIGKVKAVQILALGEFCKRAWERKNTKNRISFSSPETVANYYKESI 122
Query: 131 PMKNANNFAYCFSI 144
F
Sbjct: 123 RHLEVEELRIIFLD 136
>gi|222839521|gb|EEE77858.1| predicted protein [Populus trichocarpa]
Length = 226
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA--TLGGVFGAPLHLLQ 82
R++ +G +AL+ E+L ++L + K +A+ LL+ L G+ A L+
Sbjct: 12 PREKLAARGPSALSDIELLAIVLRTGMAGKGVLQLAQELLQLPGRAGLSGLLQAGHADLK 71
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G +L V ++R + + L + ++ H + FA F
Sbjct: 72 AIKGLGPSKCAQLLAVLELARRAMAEQLRERPALASPEAVARYLQLHLAARQHEVFAVLF 131
Query: 143 SI 144
Sbjct: 132 LD 133
>gi|126698739|ref|YP_001087636.1| DNA repair protein [Clostridium difficile 630]
gi|122974104|sp|Q18B06|Y1144_CLOD6 RecName: Full=UPF0758 protein CD1144
gi|115250176|emb|CAJ67997.1| DNA repair protein RadC homolog [Clostridium difficile]
Length = 235
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 2/140 (1%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
+ K+ + + + R R++ L KG +L+ E+L ++L K+ +A ++
Sbjct: 4 LKKSFNSTIKVKEMAPEERPREKMLAKGVKSLSNAELLAILLRTGNKNKNAIELANYIIN 63
Query: 66 RF-ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
R + + + L I+ IG + ++K R+ K + P
Sbjct: 64 RDIQGIRHLEDMTIEELCNIDGIGLSKSTQIKAALELGSRVASFKPIKYKIMNPW-DIQR 122
Query: 125 SVERHYPMKNANNFAYCFSI 144
F
Sbjct: 123 YYMDSLRYLKKEVFKAVLLN 142
>gi|121534093|ref|ZP_01665918.1| DNA repair protein RadC [Thermosinus carboxydivorans Nor1]
gi|121307196|gb|EAX48113.1| DNA repair protein RadC [Thermosinus carboxydivorans Nor1]
Length = 232
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 39/116 (33%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRI 87
+ L KG AL+ E+L ++L + +A+ LL L V L +I I
Sbjct: 23 KLLAKGPAALSNVELLAILLRTGTKNQSVMRLAEGLLAMQDGLAKVSRLTAQELSKIKGI 82
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
G A+ L +R+ + + Q + + +F
Sbjct: 83 GAAKAVTLVAAMELGKRLASLEAMQRAVIRSPQDIRDLMMPRLRYETKEHFVALLL 138
>gi|288801042|ref|ZP_06406498.1| DNA repair protein RadC [Prevotella sp. oral taxon 299 str. F0039]
gi|288331976|gb|EFC70458.1| DNA repair protein RadC [Prevotella sp. oral taxon 299 str. F0039]
Length = 229
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 1/135 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
K + Y +R R++ L++G L+ E+L +++ D + K +L +
Sbjct: 2 EKKLSITYWPEDDRPREKLLKQGAQYLSNAELLAILIGTGYAETDAVMVMKQVLTQCNNN 61
Query: 71 -GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
+ L IG+ A+ + +R K++ ++ L+ +
Sbjct: 62 LNALGKMTARELMAFKGIGEAKAVTILAACELGKRRAKSDVIEQETLSSAEAIYRYAHCI 121
Query: 130 YPMKNANNFAYCFSI 144
++ + +
Sbjct: 122 IGEQSVEHGLVLYLN 136
>gi|325298868|ref|YP_004258785.1| DNA repair protein RadC [Bacteroides salanitronis DSM 18170]
gi|324318421|gb|ADY36312.1| DNA repair protein RadC [Bacteroides salanitronis DSM 18170]
Length = 229
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 1/129 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGVFG 75
+R R++ +Q+G AL+ E+L +++ + + + +L R +L +
Sbjct: 8 SQWAEEDRPREKLMQQGAFALSNAELLAILIGSGNTEESAVGLMRRVLDRYHNSLNELGK 67
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
A + L IG A+ + S +R + +K + +
Sbjct: 68 ASIEDLCRFKGIGPAKAVTVLAASELGKRRAEETPKERKLIRCSKDIYELFHPLMCDLPV 127
Query: 136 NNFAYCFSI 144
Sbjct: 128 EECWILLLN 136
>gi|254995210|ref|ZP_05277400.1| DNA repair protein (radC) [Anaplasma marginale str. Mississippi]
Length = 230
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 50/125 (40%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR+R + L YEILELIL R D K IAK L+ F TL V A +
Sbjct: 13 GHRARLRERLISGEGVGLLDYEILELILCSARSRVDLKPIAKQLIAEFGTLSKVIYADVA 72
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L+ + +G+ + V A R LK + Q L + + N
Sbjct: 73 KLKRVKGVGESSVAAILCVREAVIRTLKGEMKYGVVVNEWQKLLDYLRVKIGNSSVENLC 132
Query: 140 YCFSI 144
+
Sbjct: 133 VLYLN 137
>gi|294495396|ref|YP_003541889.1| DNA replication and repair protein RadC [Methanohalophilus mahii
DSM 5219]
gi|292666395|gb|ADE36244.1| DNA replication and repair protein RadC [Methanohalophilus mahii
DSM 5219]
Length = 229
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 50/128 (39%), Gaps = 1/128 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ +R R+R + G ++L+ E+L +IL +++ ++ + + ++ + A
Sbjct: 9 HDMPQEDRPRERIAKYGPSSLSNTELLAIILRTGTSKENVINLCSRIFANY-SIKNLSQA 67
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L EI+ +G A ++ + ++R+ K + + + +
Sbjct: 68 NITKLTEIHGVGIAKASQISAIFELARRLEKHSDEPLPRIRSPDDVYKLLHPQLRCQKKE 127
Query: 137 NFAYCFSI 144
+
Sbjct: 128 HLTTLHLD 135
>gi|228475221|ref|ZP_04059947.1| DNA repair protein RadC [Staphylococcus hominis SK119]
gi|228270832|gb|EEK12234.1| DNA repair protein RadC [Staphylococcus hominis SK119]
Length = 225
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
++R +Q GE +L+ E+L +++ + IA ++ + L + +H L +I
Sbjct: 12 PKERLIQYGEKSLSNSELLAILINTGRRGVSSIDIANEMINKVNNLKELKLLSIHDLLKI 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A+ LK +RI K N K + + + + F
Sbjct: 72 KGIGLHKAVTLKAAFELGERINKRNSIEKVKIKSPKDVADMMMSKMKDLTQEHLVALFLN 131
Query: 145 --NII 147
NI+
Sbjct: 132 TKNIV 136
>gi|218131967|ref|ZP_03460771.1| hypothetical protein BACEGG_03590 [Bacteroides eggerthii DSM 20697]
gi|217985843|gb|EEC52183.1| hypothetical protein BACEGG_03590 [Bacteroides eggerthii DSM 20697]
Length = 241
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAPLHLL 81
+R R++ + KG AL+ E+L +++ + ++ + L L + +H
Sbjct: 26 DRPREKMMLKGAEALSDAELLAILIGSGNTEESAVTLMQRTLACCNNDLNRLGKWEVHDF 85
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G ++ + +R + F
Sbjct: 86 SRFKGLGPAKSITIMAALELGKRRKLQEHPEHTVIRSSNDIYEIFHPLLCDLTIEEFWVL 145
Query: 142 FSI 144
Sbjct: 146 LLN 148
>gi|225027645|ref|ZP_03716837.1| hypothetical protein EUBHAL_01904 [Eubacterium hallii DSM 3353]
gi|224954959|gb|EEG36168.1| hypothetical protein EUBHAL_01904 [Eubacterium hallii DSM 3353]
Length = 242
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA---TLGGVFGAPLH 79
R ++ L+ G +L E+L +++ +A ALL R L G++ +
Sbjct: 25 ERPYEKCLKAGAESLTDGELLAVLIRCGTKNYSALELAFALLDRHPVYKGLAGLYHLDME 84
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
+L+ I IG A+E+ S+R+ +A+ + + +
Sbjct: 85 MLKTIPGIGNVKAIEILCALELSKRLARASIKEESDFSSPEYIASYYMEEMRHLCVEKVM 144
Query: 140 YCFSI 144
Sbjct: 145 LLLLD 149
>gi|160897347|ref|YP_001562929.1| DNA repair protein RadC [Delftia acidovorans SPH-1]
gi|238687206|sp|A9BYK1|Y1904_DELAS RecName: Full=UPF0758 protein Daci_1904
gi|160362931|gb|ABX34544.1| DNA repair protein RadC [Delftia acidovorans SPH-1]
Length = 226
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA--TLGGVFGAPLHLLQ 82
R++ +G +AL+ E+L ++L + K +A+ LL+ L G+ A L+
Sbjct: 12 PREKLAARGPSALSDIELLAIVLRTGMAGKGVLQLAQELLQLPGRAGLSGLLQAGHADLK 71
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G +L V ++R + + L + ++ H + FA F
Sbjct: 72 AIKGLGPSKCAQLLAVLELARRAMAEQLRERPALASPEAVARYLQLHLAARQHEVFAVLF 131
Query: 143 SI 144
Sbjct: 132 LD 133
>gi|255280930|ref|ZP_05345485.1| DNA repair protein RadC [Bryantella formatexigens DSM 14469]
gi|255268378|gb|EET61583.1| DNA repair protein RadC [Bryantella formatexigens DSM 14469]
Length = 231
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL---KRFATLGGVFGAPL 78
R ++ L+ G L+ E+L +IL + +A+ +L K L G++
Sbjct: 12 DERPYEKCLKCGAGVLSDAELLAVILRTGAKGMTSVELAREILSFPKPQPGLSGLYHLSA 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L +I +GK A++++ ++ S+RI K+ S T Q +
Sbjct: 72 SALCDIKGVGKVKAVQIQCITELSRRIAKSVASEGNTFTSAQAIADYYMEDFRHLQQERV 131
Query: 139 AYCFSI 144
Sbjct: 132 FLLSFD 137
>gi|283852530|ref|ZP_06369798.1| DNA repair protein RadC [Desulfovibrio sp. FW1012B]
gi|283572138|gb|EFC20130.1| DNA repair protein RadC [Desulfovibrio sp. FW1012B]
Length = 228
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+K Y+GH RL+DR L+ ALA YE+LEL+L +I R+DTK +AK LL RF +L
Sbjct: 3 TKKEPPHYLGHRRRLKDRLLEN-PRALADYEVLELLLGYVIVRRDTKPLAKELLARFGSL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
G A L+++ G L L A R + + +
Sbjct: 62 RGTLLARTEELRDVPGFGPGAEEFLALWREAWARFHEQPARDRMVCNSPEIVADMARARI 121
Query: 131 PMKNANNFAYCFSI 144
+ F
Sbjct: 122 GAREHEEFWMALVD 135
>gi|256845195|ref|ZP_05550653.1| DNA repair protein radC [Fusobacterium sp. 3_1_36A2]
gi|294785500|ref|ZP_06750788.1| DNA repair protein RadC [Fusobacterium sp. 3_1_27]
gi|256718754|gb|EEU32309.1| DNA repair protein radC [Fusobacterium sp. 3_1_36A2]
gi|294487214|gb|EFG34576.1| DNA repair protein RadC [Fusobacterium sp. 3_1_27]
Length = 232
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
S D GH R+R++FL+ G + A YEILEL+L IPRKDTKSIAK LL +F +L +
Sbjct: 2 SEKDNQGHRERIREKFLKNGIDGFAEYEILELLLTYCIPRKDTKSIAKELLNKFKSLDNI 61
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANW-------SIKKFLTPGQPCLISV 126
F A L I+ +GK LKL+ I K ++ L +
Sbjct: 62 FKADFDKLSAIDGLGKNSITFLKLLGELPSIIYKDELKNKKLIDKETLKISNKDILLKYL 121
Query: 127 ERHYPMKNANNFAYCFS 143
+ F +
Sbjct: 122 RNKIGYEEIEKFYIIYL 138
>gi|319937413|ref|ZP_08011820.1| hypothetical protein HMPREF9488_02656 [Coprobacillus sp. 29_1]
gi|319807779|gb|EFW04372.1| hypothetical protein HMPREF9488_02656 [Coprobacillus sp. 29_1]
Length = 226
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 2/120 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ + G +L+ E+L L+L + +A+ LLK + + L +
Sbjct: 11 PREKAIVNGIESLSNVELLALVLRTGNKDESVIQLAQRLLKEIGGISQLSHICYADLIAL 70
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
I K A+EL V S+R+ + L V+ M +F
Sbjct: 71 KGIKKAKAIELLSVIEMSKRLKQKESHES--LLSPSDIYDYVKNEMMMLKQEHFVVLCLD 128
>gi|269958556|ref|YP_003328343.1| DNA repair protein RadC [Anaplasma centrale str. Israel]
gi|269848385|gb|ACZ49029.1| DNA repair protein RadC [Anaplasma centrale str. Israel]
Length = 230
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 50/125 (40%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR+R + L YEILELIL R D K IAK L+ F TL V A +
Sbjct: 13 GHRARLRERLISGEGVGLLDYEILELILCSARSRVDLKPIAKQLVAEFGTLSKVIYADVA 72
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L+ + +G+ + V A R LK + Q L + + N
Sbjct: 73 KLKRVKGVGESSVAAILCVREAVIRTLKGEMKYGVVVNEWQKLLDYLRVKIGNSSVENLC 132
Query: 140 YCFSI 144
+
Sbjct: 133 VLYLN 137
>gi|317474431|ref|ZP_07933705.1| DNA repair protein RadC [Bacteroides eggerthii 1_2_48FAA]
gi|316909112|gb|EFV30792.1| DNA repair protein RadC [Bacteroides eggerthii 1_2_48FAA]
Length = 241
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAPLHLL 81
+R R++ + KG AL+ E+L +++ + ++ + L L + +H
Sbjct: 26 DRPREKMMLKGAEALSDAELLAILIGSGNTEESAVTLMQRTLACCNNDLNRLGKWEVHDF 85
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G ++ + +R + F
Sbjct: 86 SRFKGLGPAKSITIMAALELGKRRKLQEHPEHTVIRSSNDIYEIFHPLLCDLTIEEFWVL 145
Query: 142 FSI 144
Sbjct: 146 LLN 148
>gi|325272067|ref|ZP_08138503.1| hypothetical protein G1E_04282 [Pseudomonas sp. TJI-51]
gi|324102763|gb|EGC00174.1| hypothetical protein G1E_04282 [Pseudomonas sp. TJI-51]
Length = 167
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 44/115 (38%)
Query: 30 LQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGK 89
+Q+G L+ E+L ++L + ++ +A+ LL RF L A + IG
Sbjct: 1 MQRGAAVLSDAELLAVLLGSGVAGRNVLDLARGLLVRFGGLRQFLEAERAAVLREPGIGA 60
Query: 90 RVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+L+ + +R L + + L + ++ + + F F
Sbjct: 61 VKYAQLQALLEIGRRYLDEHIARAAVLEGPEAVRRYLKAMLRHEPSEVFGCLFLD 115
>gi|19704244|ref|NP_603806.1| DNA repair protein radC [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|25009025|sp|Q8RF15|Y909_FUSNN RecName: Full=UPF0758 protein FN0909
gi|19714474|gb|AAL95105.1| DNA repair protein radC [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 232
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
S D GH R+R++F G + A YEILEL+L IPRKDTK IAK LL +F +L V
Sbjct: 2 SEKDNQGHRERIREKFFNNGIDGFAEYEILELLLTYCIPRKDTKPIAKELLNKFKSLDNV 61
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANW-------SIKKFLTPGQPCLISV 126
F A L I+ +GK LKL+ I K ++ L +
Sbjct: 62 FKASFDKLSTIDGLGKNSITFLKLLGELPSIIYKDELKNKKLIDKETLKISNKDILLKYL 121
Query: 127 ERHYPMKNANNFAYCFS 143
+ F +
Sbjct: 122 RNKIGYEEIEKFYVIYL 138
>gi|304316582|ref|YP_003851727.1| DNA repair protein RadC [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778084|gb|ADL68643.1| DNA repair protein RadC [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 234
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 47/128 (36%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ +R R+R ++ G + L+ E++ +I+ + +++ LL L +
Sbjct: 10 KDLPEDDRPRERLIKYGPSVLSNAELMAIIIGTGNRDESAIMLSQRLLSEGNGLKYLLDT 69
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L EI IG A ++K +R+ A +S + + + N
Sbjct: 70 GVERLSEIKGIGLAKAAKIKAAIELGRRLALAGYSDGYIIKKPDDVISLLMDEMRYLNKE 129
Query: 137 NFAYCFSI 144
F
Sbjct: 130 YFKVVMLN 137
>gi|314936234|ref|ZP_07843581.1| DNA repair protein RadC [Staphylococcus hominis subsp. hominis C80]
gi|313654853|gb|EFS18598.1| DNA repair protein RadC [Staphylococcus hominis subsp. hominis C80]
Length = 228
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
++R +Q GE +L+ E+L +++ + IA ++ + L + +H L +I
Sbjct: 15 PKERLIQYGEKSLSNSELLAILINTGRRGVSSIDIANEMINKVNNLKELKLLSIHDLLKI 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A+ LK +RI K N K + + + + F
Sbjct: 75 KGIGLHKAVTLKAAFELGERINKRNSIEKVKIKSPKDVADMMMSKMKDLTQEHLVALFLN 134
Query: 145 --NII 147
NI+
Sbjct: 135 TKNIV 139
>gi|154504386|ref|ZP_02041124.1| hypothetical protein RUMGNA_01890 [Ruminococcus gnavus ATCC 29149]
gi|153795315|gb|EDN77735.1| hypothetical protein RUMGNA_01890 [Ruminococcus gnavus ATCC 29149]
Length = 231
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK---RFATLGGVFGAPLH 79
R +R + G + L E+L ++L ++ +A +L + +
Sbjct: 13 ERPYERCERFGASNLTDSELLAVLLRTGTRGENALQLADKILHPVFSQKGVLNLHQWTYE 72
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L +I IGK A+++ ++ S+R+ KA + N
Sbjct: 73 QLMQIKGIGKVKAIQILCLAELSRRLAKATAQEGLNFSNPASIARYYMEDLRHANQEQMK 132
Query: 140 YCFSI 144
Sbjct: 133 LLLLN 137
>gi|307706681|ref|ZP_07643487.1| DNA repair protein radC [Streptococcus mitis SK321]
gi|307617925|gb|EFN97086.1| DNA repair protein radC [Streptococcus mitis SK321]
Length = 226
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++G AL+ +E+L ++L + IA+ +L ++L + L LQ +
Sbjct: 13 PRERLAKEGVEALSNHELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI K + + Q +++ K + +
Sbjct: 73 SGIGRVKAIELQAMIELGHRIHKHETIEMESILSSQKLAKKMQQELGHKKQEHLVALYLN 132
>gi|95931398|ref|ZP_01314108.1| DNA repair protein RadC [Desulfuromonas acetoxidans DSM 684]
gi|95132554|gb|EAT14243.1| DNA repair protein RadC [Desulfuromonas acetoxidans DSM 684]
Length = 233
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 2/136 (1%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIP--RKDTKSIAKALLKRFA 68
++ + +R R++ LQ+G AL+ E+L LIL A++LL +F
Sbjct: 2 AELRRIKDWPEGDRPREKLLQRGSEALSDAELLALILRTGDAASGTSAVDQARSLLNQFD 61
Query: 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
L + A L I+ IG + EL V ++R+ T +
Sbjct: 62 NLPQLARATTSELCTISGIGPAKSAELHAVFELARRLSDCALMPGGSFTHAETVFQRYRN 121
Query: 129 HYPMKNANNFAYCFSI 144
+ N F
Sbjct: 122 RFLRYNKEVFIALLLD 137
>gi|260888418|ref|ZP_05899681.1| DNA repair protein RadC [Selenomonas sputigena ATCC 35185]
gi|330838268|ref|YP_004412848.1| DNA repair protein RadC [Selenomonas sputigena ATCC 35185]
gi|260861954|gb|EEX76454.1| DNA repair protein RadC [Selenomonas sputigena ATCC 35185]
gi|329746032|gb|AEB99388.1| DNA repair protein RadC [Selenomonas sputigena ATCC 35185]
Length = 229
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 2/125 (1%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL--KRFATLGGVFGAPLH 79
R R+R L +G +L+ E+L ++L + +A+ +L + L +
Sbjct: 11 DERPRERLLAEGAASLSNTELLAVLLRTGVKDDSVLRVAEKVLALYKERGLAAITQMSAK 70
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L I +G A + +R+ + + V + + +FA
Sbjct: 71 ELSSIKGVGMAKAATILAAVELGRRLALKAAEERTIVHGPADAASYVMPRFRFERREHFA 130
Query: 140 YCFSI 144
Sbjct: 131 VLLLN 135
>gi|34762350|ref|ZP_00143353.1| DNA repair protein radC [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27888004|gb|EAA25068.1| DNA repair protein radC [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 232
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
GH R++++FL+ G ++ A YEILEL+L IPRKDTKSIAK LL +F +L +F A
Sbjct: 7 QGHRERIKEKFLKNGIDSFAEYEILELLLTYCIPRKDTKSIAKELLNKFKSLDNIFKADF 66
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANW-------SIKKFLTPGQPCLISVERHYP 131
L I+ +GK LKL+ I K ++ L +
Sbjct: 67 DKLSAIDGLGKNSIAFLKLIGDLPSIIYKDELKNKKLVNKETLKISNKDILLNYLRNKIG 126
Query: 132 MKNANNFAYCFS 143
+ F +
Sbjct: 127 YEEKEKFYVIYL 138
>gi|291459235|ref|ZP_06598625.1| DNA repair protein RadC [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291418489|gb|EFE92208.1| DNA repair protein RadC [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 232
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 4/125 (3%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF---GAPLHLL 81
R++ +++G ++L E+L ++L K +++ LL R G+ L
Sbjct: 16 PREKCIREGASSLTDAELLAVLLRTGTKEKSVLELSEELLSREENFDGLVALTHLDPAEL 75
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWS-IKKFLTPGQPCLISVERHYPMKNANNFAY 140
+++ IG A EL V ++RI + G+ + +
Sbjct: 76 RKLRGIGVSKAAELSAVGEIARRIWNRKMRVRRLSFHRGRDVYDYFKEDLRYLDHEVIHI 135
Query: 141 CFSIN 145
+ N
Sbjct: 136 LYLDN 140
>gi|222151541|ref|YP_002560697.1| DNA repair protein RadC homolog [Macrococcus caseolyticus JCSC5402]
gi|222120666|dbj|BAH18001.1| DNA repair protein RadC homolog [Macrococcus caseolyticus JCSC5402]
Length = 223
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
++ R+R L G L E+L LI+ + ++ ++A+ LL+ +G + L
Sbjct: 9 DKPRERLLTYGAAQLTNQELLSLIIGSGVREENVYTVAQRLLEHIGHIGDLRYMTFQELI 68
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I IG++ A + + + R+ + + + +F
Sbjct: 69 TIKGIGQKKAAMILAIIELAIRMHTHTKETRIKVKSPACAANLLMERLRYMTQEHFIVLS 128
Query: 143 SI--NII 147
NI+
Sbjct: 129 LNTKNIV 135
>gi|307611348|emb|CBX01009.1| DNA repair protein RadC [Legionella pneumophila 130b]
Length = 227
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
LR++ L G ++L+ E+L + + +K +A L K L + A L + I
Sbjct: 12 LREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSI 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +G+ +L+ R + + L+ Q +++ FA F
Sbjct: 72 HGLGEVRYAQLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|116872978|ref|YP_849759.1| DNA repair protein RadC [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123461096|sp|A0AIZ8|Y1562_LISW6 RecName: Full=UPF0758 protein lwe1562
gi|116741856|emb|CAK20980.1| DNA repair protein RadC homolog [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 224
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 45/128 (35%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
I + R++ G AL+ E++ LI+ + +IA ++ +F + + A
Sbjct: 4 SEISESEKPREKLQNYGIEALSSSELVALIIETGTKNESVLTIANRIIMKFKHVAEMQYA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ Q +N IG A ++ +RI + + + V
Sbjct: 64 SIEEFQLVNGIGVAKASKIMAAIELGRRISIVTNQEEIVIRCPDDAVKLVMPELAFLFQE 123
Query: 137 NFAYCFSI 144
+F F
Sbjct: 124 HFHCIFLN 131
>gi|187735725|ref|YP_001877837.1| DNA repair protein RadC [Akkermansia muciniphila ATCC BAA-835]
gi|187425777|gb|ACD05056.1| DNA repair protein RadC [Akkermansia muciniphila ATCC BAA-835]
Length = 246
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 2/121 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L++G ++L+ E+L + L I K+ ++ L++ +L + + I
Sbjct: 15 PREKLLRQGRHSLSNAELLAIFLRMGIKGKNVLDMSSDLIQSAGSLDALAHMEAAEIANI 74
Query: 85 -NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
IG A L R L+ S + + + + K
Sbjct: 75 CKGIGMAKAATLSAAFELGARALRETLSRQP-IQTPEDVYDYLTTAMRWKEKETVLVLLL 133
Query: 144 I 144
Sbjct: 134 D 134
>gi|212691747|ref|ZP_03299875.1| hypothetical protein BACDOR_01242 [Bacteroides dorei DSM 17855]
gi|237708658|ref|ZP_04539139.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237724073|ref|ZP_04554554.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265755314|ref|ZP_06090084.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212665648|gb|EEB26220.1| hypothetical protein BACDOR_01242 [Bacteroides dorei DSM 17855]
gi|229437533|gb|EEO47610.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229457358|gb|EEO63079.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263234456|gb|EEZ20046.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 229
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 37/127 (29%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL-KRFATLGGVFGAP 77
+R R++ + G L+ E+L +++ + + +L +L +
Sbjct: 10 WAEEDRPREKMMLHGVGTLSDAELLAILIGSGNTEDSAVELMRKVLSDYHNSLNELGKTT 69
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L IG A+ + S +R + +K + +
Sbjct: 70 VDELCHYKGIGPAKAITILAASELGKRRKEEEGKERKVILSSRDVYQYFYPLMCDLPIEE 129
Query: 138 FAYCFSI 144
Sbjct: 130 CWVLLLN 136
>gi|317495680|ref|ZP_07954045.1| DNA repair protein RadC [Gemella moribillum M424]
gi|316914133|gb|EFV35614.1| DNA repair protein RadC [Gemella moribillum M424]
Length = 258
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ + G +L+ E+L ++L K+ +A ++L+ + + + L
Sbjct: 14 DRPREKLKKYGAFSLSDKEVLAILLRTGTKNKNVIELASSILEDVGGITKLRETTFNELA 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ IG+ A+ + ++RI + K + ++ F
Sbjct: 74 KHKGIGEEKAIHILANIEFARRIYSTDIPDIKC-NSPEVIARFLKSSLENLTQEFFIVL 131
>gi|116750704|ref|YP_847391.1| DNA repair protein RadC [Syntrophobacter fumaroxidans MPOB]
gi|116699768|gb|ABK18956.1| DNA repair protein RadC [Syntrophobacter fumaroxidans MPOB]
Length = 225
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 59/125 (47%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR+RF + G + +E+LEL+L IPR+D K +AK LL RF +L V AP
Sbjct: 7 GHRARLRERFGRSGLSGFHDHEVLELLLSYAIPRRDVKPLAKDLLSRFGSLAAVLDAPPA 66
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
+L+ + IG A L ++ R ++ W ++ + + + + + F
Sbjct: 67 VLRNVPGIGPNAAALLSILPELFTRYRESRWHREETFNSTRGAVSYLSALLCTERSEKFC 126
Query: 140 YCFSI 144
Sbjct: 127 ILALN 131
>gi|206603634|gb|EDZ40114.1| DNA repair protein (RadC) [Leptospirillum sp. Group II '5-way CG']
Length = 237
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 4/137 (2%)
Query: 12 KDSHLDY----IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
K+S Y +R R+R +G AL E+L ++L + + ++A+ LL +
Sbjct: 2 KESETHYCVREWSEGDRPRERLRDRGPAALHDAELLAILLRVGNRGESSVALAQKLLAMY 61
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
L GV A L ++ +G A ++ +R+ + + + +
Sbjct: 62 GGLEGVAAAGFSALSSLSGMGLAKASQIMAGIELGRRVSGKARPFRPEIRSARDVYDILG 121
Query: 128 RHYPMKNANNFAYCFSI 144
+ +F
Sbjct: 122 ARLRDEKKESFWVLLLD 138
>gi|254303275|ref|ZP_04970633.1| DNA repair protein RadC [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
gi|148323467|gb|EDK88717.1| DNA repair protein RadC [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
Length = 232
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
GH R++++FL+ G + A YEILEL+L IPRKDTK IAK LL +F +L VF A
Sbjct: 7 QGHRERIKEKFLKNGIDGFAEYEILELLLTYCIPRKDTKPIAKELLNKFKSLDNVFKADF 66
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANW-------SIKKFLTPGQPCLISVERHYP 131
L I+ +GK LKL+ I K ++ L +
Sbjct: 67 DKLSAIDGLGKNSIAFLKLIGDLPSIIYKDELKNKKLIDKETLKISNKDILLKYLRNKIG 126
Query: 132 MKNANNFAYCFS 143
+ F +
Sbjct: 127 YEEIEKFYVLYL 138
>gi|158520692|ref|YP_001528562.1| DNA repair protein RadC [Desulfococcus oleovorans Hxd3]
gi|158509518|gb|ABW66485.1| DNA repair protein RadC [Desulfococcus oleovorans Hxd3]
Length = 253
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 61/134 (45%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
++ + GH RLR++FL G + YEI+EL+L PRKD K+ AKA + F TL
Sbjct: 2 TQTTSHKGTGHRQRLREKFLASGLSGFHDYEIIELLLTLATPRKDCKAPAKAAMAEFKTL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
GV A L I+ IG + ++LV + R L+ + L L +
Sbjct: 62 QGVLNAAPEALCRIDGIGPKNLFGIRLVKAVADRCLEKELVGRPLLANSTDLLNYLNHTL 121
Query: 131 PMKNANNFAYCFSI 144
++ FA F
Sbjct: 122 RDRHRETFAAIFMD 135
>gi|313204670|ref|YP_004043327.1| DNA repair protein radc [Paludibacter propionicigenes WB4]
gi|312443986|gb|ADQ80342.1| DNA repair protein RadC [Paludibacter propionicigenes WB4]
Length = 233
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 41/128 (32%), Gaps = 2/128 (1%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAP 77
+R R++ L KG L+ E+L +++ + +++ ++ + +
Sbjct: 13 WAEDDRPREKMLCKGCQCLSDAELLAILIGSGNRDESAVELSRRIMHECSDNINELAQLS 72
Query: 78 LHLLQ-EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L IG+ A+ + +R + +K +T E
Sbjct: 73 ITDLCKRFKGIGEAKAITIMAALEIGKRRKTSEVVERKKITSSLDLFDLFEPQLVDLPHE 132
Query: 137 NFAYCFSI 144
F
Sbjct: 133 EFWVGLLN 140
>gi|166031835|ref|ZP_02234664.1| hypothetical protein DORFOR_01536 [Dorea formicigenerans ATCC
27755]
gi|166028288|gb|EDR47045.1| hypothetical protein DORFOR_01536 [Dorea formicigenerans ATCC
27755]
Length = 230
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 2/124 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV--FGAPLHL 80
+R ++ + G AL+ E+L ++L ++ +A +L G + +
Sbjct: 14 DRPYEKCEKLGAGALSDTELLAVLLRTGTRGENALELASRILYHNGESGILGIHQFSIER 73
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L++I+ +G+ A++L +S ++R+ KA+ +
Sbjct: 74 LKKIHGVGRVKAVQLSCISELAKRLSKASAGELLSFENPDSIARYYMEDLRHEKQEIMKL 133
Query: 141 CFSI 144
Sbjct: 134 LMLN 137
>gi|27262222|gb|AAN87392.1| DNA repair protein RadC [Heliobacillus mobilis]
Length = 216
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 1/128 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ R R+R L G AL E+L ++L R+ +A +L R L + A
Sbjct: 10 KDMPEDLRPRERLLSAGPQALTNAELLAILLRTGTTRETAIDLAHRIL-RQGGLRFLAEA 68
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L + +G + ++K +RI + + + + V +
Sbjct: 69 TAEELSSLKGLGLAKSAQVKAAVELGRRIASTSPESRPSIRSPEDVSRLVMEEMRFMDKE 128
Query: 137 NFAYCFSI 144
F
Sbjct: 129 FFRAIALN 136
>gi|15675098|ref|NP_269272.1| DNA repair protein RadC [Streptococcus pyogenes M1 GAS]
gi|19746067|ref|NP_607203.1| DNA repair protein RadC [Streptococcus pyogenes MGAS8232]
gi|56808362|ref|ZP_00366118.1| COG2003: DNA repair proteins [Streptococcus pyogenes M49 591]
gi|71910653|ref|YP_282203.1| DNA repair protein RadC [Streptococcus pyogenes MGAS5005]
gi|94988589|ref|YP_596690.1| DNA repair protein RadC [Streptococcus pyogenes MGAS9429]
gi|94990465|ref|YP_598565.1| DNA repair protein RadC [Streptococcus pyogenes MGAS10270]
gi|94992412|ref|YP_600511.1| DNA repair protein RadC [Streptococcus pyogenes MGAS2096]
gi|94994387|ref|YP_602485.1| DNA repair protein RadC [Streptococcus pyogenes MGAS10750]
gi|139473789|ref|YP_001128505.1| DNA repair protein RadC [Streptococcus pyogenes str. Manfredo]
gi|209559401|ref|YP_002285873.1| DNA repair protein RadC [Streptococcus pyogenes NZ131]
gi|306827376|ref|ZP_07460663.1| DNA repair protein RadC [Streptococcus pyogenes ATCC 10782]
gi|54039004|sp|P65963|Y1079_STRP8 RecName: Full=UPF0758 protein spyM18_1079
gi|54041785|sp|P65962|Y1118_STRP1 RecName: Full=UPF0758 protein SPy_1118/M5005_Spy0840
gi|229485566|sp|Q1JBU1|Y915_STRPB RecName: Full=UPF0758 protein MGAS2096_Spy0915
gi|229485567|sp|Q1JLS3|Y959_STRPC RecName: Full=UPF0758 protein MGAS9429_Spy0959
gi|229485568|sp|Q1JGX3|Y956_STRPD RecName: Full=UPF0758 protein MGAS10270_Spy0956
gi|229485569|sp|Q1J6P2|Y991_STRPF RecName: Full=UPF0758 protein MGAS10750_Spy0991
gi|229485570|sp|A2REK0|Y948_STRPG RecName: Full=UPF0758 protein SpyM50948
gi|238054491|sp|B5XLG6|Y870_STRPZ RecName: Full=UPF0758 protein Spy49_0870
gi|13622255|gb|AAK33993.1| putative DNA repair protein [Streptococcus pyogenes M1 GAS]
gi|19748237|gb|AAL97702.1| putative DNA repair protein [Streptococcus pyogenes MGAS8232]
gi|71853435|gb|AAZ51458.1| DNA repair protein [Streptococcus pyogenes MGAS5005]
gi|94542097|gb|ABF32146.1| DNA repair protein [Streptococcus pyogenes MGAS9429]
gi|94543973|gb|ABF34021.1| DNA repair protein radC [Streptococcus pyogenes MGAS10270]
gi|94545920|gb|ABF35967.1| DNA repair protein radC [Streptococcus pyogenes MGAS2096]
gi|94547895|gb|ABF37941.1| DNA repair protein radC [Streptococcus pyogenes MGAS10750]
gi|134272036|emb|CAM30275.1| DNA repair protein RadC [Streptococcus pyogenes str. Manfredo]
gi|209540602|gb|ACI61178.1| RadC-like DNA repair protein [Streptococcus pyogenes NZ131]
gi|304430523|gb|EFM33545.1| DNA repair protein RadC [Streptococcus pyogenes ATCC 10782]
Length = 226
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G +L+ E+L ++L K ++ LL +L L LQ +
Sbjct: 13 PRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IGK A+E+K + RIL + ++ + + K + +
Sbjct: 73 AGIGKVKAIEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLD 132
Query: 145 N 145
N
Sbjct: 133 N 133
>gi|54295324|ref|YP_127739.1| DNA repair protein RadC [Legionella pneumophila str. Lens]
gi|81368019|sp|Q5WTW4|Y2409_LEGPL RecName: Full=UPF0758 protein lpl2409
gi|53755156|emb|CAH16649.1| DNA repair protein RadC [Legionella pneumophila str. Lens]
Length = 227
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
LR++ L G ++L+ E+L + + +K +A L K L + A L + I
Sbjct: 12 LREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSI 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +G+ +L+ R + + L+ Q +++ FA F
Sbjct: 72 HGLGEVRYAQLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|325138320|gb|EGC60889.1| DNA repair protein RadC [Neisseria meningitidis ES14902]
gi|325142461|gb|EGC64865.1| DNA repair protein RadC [Neisseria meningitidis 961-5945]
Length = 209
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 41/115 (35%)
Query: 30 LQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGK 89
+++G AL+ E+L ++L +A+ LL+ F +LG + A + L +G
Sbjct: 1 MERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGT 60
Query: 90 RVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +V +RIL L+ + H +
Sbjct: 61 ASFTQFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLN 115
>gi|71903481|ref|YP_280284.1| DNA repair protein RadC [Streptococcus pyogenes MGAS6180]
gi|123639877|sp|Q48TN1|Y816_STRPM RecName: Full=UPF0758 protein M28_Spy0816
gi|71802576|gb|AAX71929.1| DNA repair protein [Streptococcus pyogenes MGAS6180]
Length = 226
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G +L+ E+L ++L K ++ LL +L L LQ +
Sbjct: 13 PRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IGK A+E+K + RIL + ++ + + K + +
Sbjct: 73 AGIGKVKAIEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLD 132
Query: 145 N 145
N
Sbjct: 133 N 133
>gi|257066807|ref|YP_003153063.1| DNA repair protein RadC [Anaerococcus prevotii DSM 20548]
gi|256798687|gb|ACV29342.1| DNA repair protein RadC [Anaerococcus prevotii DSM 20548]
Length = 228
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 8/145 (5%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M +A S Y ++ R++ +++G ++L YE+L +IL K+ ++K +L+
Sbjct: 1 MKEAKSFKDLEKY----DKPREKLIREGFSSLTDYELLAIILSTGTKDKNVIELSKEILE 56
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLI 124
F + + + L +I I + A + +RI + + +T +
Sbjct: 57 VF-SYEELLEIEVKELTDIKGIKQAKATRVVAGLQLGKRINERVLDKKIEKITSSKDVYD 115
Query: 125 SVERHYPMKNANNFAYCFSI--NII 147
+ F N+I
Sbjct: 116 IMSPRLSNLKKEYFYAILLDSKNVI 140
>gi|154483531|ref|ZP_02025979.1| hypothetical protein EUBVEN_01235 [Eubacterium ventriosum ATCC
27560]
gi|149735441|gb|EDM51327.1| hypothetical protein EUBVEN_01235 [Eubacterium ventriosum ATCC
27560]
Length = 231
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 5/127 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG-----VFGAP 77
+R ++ KG L E+L +IL + ++K +L + G +
Sbjct: 11 DRPYEKCFAKGPEYLTDVELLAVILRTGTNGISSFELSKDILSHKSQNGKQDLLAIMHMT 70
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L I +G A+++ V +RI N
Sbjct: 71 KEQLLSIKGVGMVKAVQIMCVRELVRRISSVKAKDSIQYNIPSTIADYYMEQLRHLEQEN 130
Query: 138 FAYCFSI 144
F
Sbjct: 131 LVVMFLD 137
>gi|189462975|ref|ZP_03011760.1| hypothetical protein BACCOP_03677 [Bacteroides coprocola DSM 17136]
gi|189430257|gb|EDU99241.1| hypothetical protein BACCOP_03677 [Bacteroides coprocola DSM 17136]
Length = 230
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAP 77
+R R++ +Q G AL+ E+L +++ + + +L + +L +
Sbjct: 11 WAEEDRPREKMMQHGAAALSNAELLAILIGSGNTEDSAVELMRKVLGDYRNSLSELGKTT 70
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L IG A+ + S +R L+ +K + +
Sbjct: 71 IDELCRYKGIGPAKAITILAASEIGRRRLEEEPLERKQIRCSKDIYEVFYPLMCDLPVEE 130
Query: 138 FAYCFSI 144
Sbjct: 131 CWVLLLN 137
>gi|330428834|gb|AEC20168.1| DNA repair protein RadC [Pusillimonas sp. T7-7]
Length = 225
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 48/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L G + L E+L +IL + D S+ + L+++F L G+ A H L +
Sbjct: 13 PRERLLAHGAHVLTSPELLAIILRTGMKGCDAVSLGRRLIEQFDGLRGLLSADAHTLMGL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G EL ++ ++R L+ N + L Q + + +
Sbjct: 73 PGLGMAKTCELLAINELNRRALEENLKAGQALDQPQRVKHYCTAKLGHLSVEHCIALYLD 132
>gi|50914184|ref|YP_060156.1| DNA repair protein RadC [Streptococcus pyogenes MGAS10394]
gi|73913742|sp|Q5XC90|Y838_STRP6 RecName: Full=UPF0758 protein M6_Spy0838
gi|50903258|gb|AAT86973.1| DNA repair protein radC [Streptococcus pyogenes MGAS10394]
Length = 226
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G +L+ E+L ++L K ++ LL +L L LQ +
Sbjct: 13 PRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IGK A+E+K + RIL + ++ + + K + +
Sbjct: 73 AGIGKVKAIEIKAMIELVSRILAIDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLD 132
Query: 145 N 145
N
Sbjct: 133 N 133
>gi|320527463|ref|ZP_08028644.1| putative DNA repair protein RadC [Solobacterium moorei F0204]
gi|320132176|gb|EFW24725.1| putative DNA repair protein RadC [Solobacterium moorei F0204]
Length = 239
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R RD+ L+ G +L+ E+L LIL + ++A LL+ + G+ L
Sbjct: 10 ERPRDKGLRYGVRSLSSRELLALILRTGSQGESVLTMADNLLQMSKGIKGLVHMSNEELC 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I I K AL+L+ + S+R ++ + + + + + F +
Sbjct: 70 KIKGISKVKALQLQAIFEISRRASLEAAYEEEIIDNPERIIEWLRNEIGTGSQEKFLVVY 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|307243140|ref|ZP_07525314.1| DNA repair protein RadC [Peptostreptococcus stomatis DSM 17678]
gi|306493500|gb|EFM65479.1| DNA repair protein RadC [Peptostreptococcus stomatis DSM 17678]
Length = 228
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 2/124 (1%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-RFATLGGVFGAPLHL 80
+ R++ ++KG +L+ E+L +++ + +++ +L + G+ L
Sbjct: 13 DEKPREKMIKKGVKSLSDAELLAIMIRTGDKNNNAVTLSSKVLTLSKDGVRGLTDLSLDE 72
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L I+ IG A +K R+ + K + F
Sbjct: 73 LCSIDGIGPSKATIIKAALELGIRVSQY-LPRKFKINNPWDVYSYYMEELRYLKKEVFKV 131
Query: 141 CFSI 144
Sbjct: 132 ILLN 135
>gi|52842697|ref|YP_096496.1| DNA repair protein RadC [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|81376830|sp|Q5ZSM8|Y2489_LEGPH RecName: Full=UPF0758 protein lpg2489
gi|52629808|gb|AAU28549.1| DNA repair protein RadC [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
Length = 227
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
LR++ L G ++L+ E+L + + +K +A L K L + A L + I
Sbjct: 12 LREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSI 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +G+ +L+ R + + L+ Q +++ FA F
Sbjct: 72 HGLGEVRYAQLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLD 131
Query: 145 N 145
N
Sbjct: 132 N 132
>gi|160947462|ref|ZP_02094629.1| hypothetical protein PEPMIC_01396 [Parvimonas micra ATCC 33270]
gi|158446596|gb|EDP23591.1| hypothetical protein PEPMIC_01396 [Parvimonas micra ATCC 33270]
Length = 287
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
++ R++ + G L+ YE++ +++ ++D +++K L K + ++ L
Sbjct: 72 DKPREKLYKFGLENLSEYELIAILIRSGSKKEDVLTLSKKLWKYMNKFHRISEITINDLM 131
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I+ IG A + S+R+ + + + +F
Sbjct: 132 KIDGIGLSKACSIVSALELSKRLNMRECVDNFSIGSPKSVADIFMNILRDEMKEHFYVLL 191
Query: 143 SI 144
Sbjct: 192 LD 193
>gi|260593482|ref|ZP_05858940.1| DNA repair protein RadC [Prevotella veroralis F0319]
gi|260534598|gb|EEX17215.1| DNA repair protein RadC [Prevotella veroralis F0319]
Length = 228
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 1/124 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAP 77
+R R++ + G NAL+ E+L +++ + + K +LK +
Sbjct: 9 WAEADRPREKLERLGANALSDAELLAILIGSGTANESAVDLMKRILKDCNNNLNTLGKLS 68
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
LH L+E IG A+ + +R +A L + + N
Sbjct: 69 LHRLEEYKGIGPAKAITILAACELGKRRQRAKVEDAPLLNSAEAIYNYMHTTIQDLNIEE 128
Query: 138 FAYC 141
Sbjct: 129 GWIL 132
>gi|294783990|ref|ZP_06749312.1| DNA repair protein RadC [Fusobacterium sp. 1_1_41FAA]
gi|294479802|gb|EFG27581.1| DNA repair protein RadC [Fusobacterium sp. 1_1_41FAA]
Length = 236
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M+K +K+ GH R+R +FL+ G N L YE+LEL+LF +IPR+DTK+IAK L+K
Sbjct: 1 MAKEKTKNDA---EGHRERVRKKFLENGFNGLEDYEVLELLLFYVIPRQDTKAIAKELIK 57
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIK-------KFLTP 118
RF TL V A L+ I+ +G LK++ RI K + +T
Sbjct: 58 RFKTLANVLKADTLELKNIDGLGPISITFLKMIGDLPARIYKDELKNQKLIKDDKNKITD 117
Query: 119 GQPCLISVERHYPMKNANNFAYCFS 143
+ L + ++ F +
Sbjct: 118 KEVLLSFLRNKIGYEDVEKFYVIYL 142
>gi|237741852|ref|ZP_04572333.1| DNA repair protein radC [Fusobacterium sp. 4_1_13]
gi|229429500|gb|EEO39712.1| DNA repair protein radC [Fusobacterium sp. 4_1_13]
Length = 232
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
S D GH R++++FL+ G + A YEILEL+L IPRKDTK IAK LL +F +L +
Sbjct: 2 SEKDNQGHRERIKEKFLKNGIDGFAEYEILELLLTYCIPRKDTKPIAKKLLNKFKSLDNI 61
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANW-------SIKKFLTPGQPCLISV 126
F A L I+ +GK LKL+ I K ++ L +
Sbjct: 62 FKADFDKLFAIDGLGKNSIAFLKLIGDLPSIIYKDELKNKKLVNKEILKISNKDILLNYL 121
Query: 127 ERHYPMKNANNFAYCFS 143
+ F +
Sbjct: 122 RNKIGYEEKEKFYVIYL 138
>gi|149199804|ref|ZP_01876834.1| DNA repair protein RadC [Lentisphaera araneosa HTCC2155]
gi|149137092|gb|EDM25515.1| DNA repair protein RadC [Lentisphaera araneosa HTCC2155]
Length = 235
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLG 71
+ + + +R R+R LQ GE L+ E+L LI+ + +A+ +L F ++
Sbjct: 2 NKKIKDLAEFDRPRERMLQLGEAQLSESELLALIIGSGTREQSALGLAREILAHFDNSVF 61
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
+ A L L+ I+ +G A L+ V +++++ + + + + +
Sbjct: 62 RLSRATLEDLETIHGVGPAKATSLRAVFALARKLVAEEAMEQFTIHRPESAAPYLIQLLA 121
Query: 132 MKNANNFAYCFSI 144
K+ F
Sbjct: 122 GKSKEEFHILLLD 134
>gi|91772435|ref|YP_565127.1| DNA repair protein RadC [Methanococcoides burtonii DSM 6242]
gi|121684487|sp|Q12YU9|Y382_METBU RecName: Full=UPF0758 protein Mbur_0382
gi|91711450|gb|ABE51377.1| DNA repair protein RadC [Methanococcoides burtonii DSM 6242]
Length = 229
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + +R R+R L+ G L+ E+L +IL ++ S++ +L + L +
Sbjct: 7 RIHDMPSEDRPRERLLKHGPGFLSNAELLSVILRTGSKDENVVSMSSRILSEY-NLKQLS 65
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A + L +I IG A ++ + ++++ K+ + + +
Sbjct: 66 QANISQLTKIRGIGPAKASQIAALFELARKLEIFTDDPKRKIRSANDVYSLLYPRHRELK 125
Query: 135 ANNFAYCFSI---NII 147
+ + NII
Sbjct: 126 KEHLTALYLDTKNNII 141
>gi|315651397|ref|ZP_07904422.1| DNA repair protein RadC [Eubacterium saburreum DSM 3986]
gi|315486356|gb|EFU76713.1| DNA repair protein RadC [Eubacterium saburreum DSM 3986]
Length = 236
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 4/126 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA---TLGGVFGAPLH 79
R DR ++ G +L E+L ++L + ++A +L+ + +F +
Sbjct: 18 QRPYDRAVEYGVESLTDVELLAVLLRTGTKDVNVVNLAYKILEGNGEGFGINSIFHHNMD 77
Query: 80 LLQEINRIGKRVALELKLVSVASQRIL-KANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L I IGK A+++ + +R + N + +
Sbjct: 78 RLLSIKGIGKVKAVQILALGEFCKRAWERKNIKNRISFGSPDVVANYYKESIRHLEVEEL 137
Query: 139 AYCFSI 144
F
Sbjct: 138 RIVFLD 143
>gi|319900227|ref|YP_004159955.1| DNA repair protein RadC [Bacteroides helcogenes P 36-108]
gi|319415258|gb|ADV42369.1| DNA repair protein RadC [Bacteroides helcogenes P 36-108]
Length = 228
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 40/127 (31%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAP 77
+R R++ +QKG AL+ E+L +++ + ++ + +L L +
Sbjct: 9 WAEEDRPREKMMQKGAEALSDAELLAILIGSGNTEESAVTLMQRVLSDCGNDLNRLGKWE 68
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+H +G ++ + +R + + + +
Sbjct: 69 VHDFSRFKGLGPAKSISIMAALELGKRRKQQERPERATIRSSADIYELFHPLLCDLSIEE 128
Query: 138 FAYCFSI 144
F
Sbjct: 129 FWILLMN 135
>gi|258647040|ref|ZP_05734509.1| DNA repair protein RadC [Prevotella tannerae ATCC 51259]
gi|260853150|gb|EEX73019.1| DNA repair protein RadC [Prevotella tannerae ATCC 51259]
Length = 228
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-RFATLGGVFGAP 77
+R R++F + G L+ E+L +++ P KD + K +L +L +
Sbjct: 8 WSKEDRPREKFEELGPRQLSSAELLAILIGSGCPGKDAVVLMKEILNDHDNSLRRLGRVD 67
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L IG A+ + +R + + + Q +
Sbjct: 68 IQSLCRYAGIGPAKAITILAACELGRRRAEEPAEQRPLMDGPQKIYSFFRQRLEDTPHEE 127
Query: 138 FAYCFSI 144
F F
Sbjct: 128 FHAMFLN 134
>gi|298243838|ref|ZP_06967645.1| DNA repair protein [Ktedonobacter racemifer DSM 44963]
gi|297556892|gb|EFH90756.1| DNA repair protein [Ktedonobacter racemifer DSM 44963]
Length = 398
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 47/121 (38%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ H R R+R ++G ++L+ ++L +IL R + +A LL ++ LGG+ A
Sbjct: 23 HDLPHDERPRERLQKQGADSLSNADLLAIILRTGTQRDNVMEMAGKLLAKYGGLGGLMSA 82
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
H L E +G A +LK +R+ K + V
Sbjct: 83 SFHQLSEEYGLGLAKAAQLKAALELGKRLSMLQHDQKYQIRSADDVANLVRMELMFLEHE 142
Query: 137 N 137
Sbjct: 143 E 143
>gi|315282469|ref|ZP_07870876.1| putative DNA repair protein [Listeria marthii FSL S4-120]
gi|313613887|gb|EFR87624.1| putative DNA repair protein [Listeria marthii FSL S4-120]
Length = 224
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R++ G AL+ E++ LI+ + +IA ++ +F + + A + Q
Sbjct: 10 EKPREKLQNYGIEALSSSELVALIIETGTKNESVLTIANRIIMKFKNVAEMQYASIEEFQ 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+N IG A ++ +RI + + + + V +F F
Sbjct: 70 LVNGIGIAKASKIMAAVELGRRISLVTEQEEVVVRCPEDAVKLVMPELAFLFQEHFHCLF 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|289432459|ref|YP_003462332.1| DNA repair protein RadC [Dehalococcoides sp. GT]
gi|288946179|gb|ADC73876.1| DNA repair protein RadC [Dehalococcoides sp. GT]
Length = 228
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 4/139 (2%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
MS PS R R+R G AL+ E+L +IL R + + A+ L+
Sbjct: 1 MSPVPSIRDLPLA----ERPRERLQSLGAGALSSVELLAVILGRGVAGEPVLQSAQRLIA 56
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
F G+ A + L ++ IG A +LK ++R + + +
Sbjct: 57 HFGGPSGIACASVEELSKLKGIGLAKACQLKAAFELAKRAGGIKGEYQPCIKTPEDVFQI 116
Query: 126 VERHYPMKNANNFAYCFSI 144
+ + F
Sbjct: 117 IYPLVCDEKKEYFFCLMLD 135
>gi|330895708|gb|EGH27998.1| hypothetical protein PSYJA_02844 [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 117
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 45/108 (41%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LLK+F L + A L +
Sbjct: 10 ERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLKQFDGLRPLLDADLSVFT 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+G +L+ V ++R + + + L ++
Sbjct: 70 SQLGLGPAKFAQLQAVMEMARRHMAESLRRESALENPTQVRGYLKALL 117
>gi|291559003|emb|CBL37803.1| DNA replication and repair protein RadC [butyrate-producing
bacterium SSC/2]
Length = 242
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 3/143 (2%)
Query: 5 RMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
+ S K L + R ++ + G L+ E+L +IL + +A +L
Sbjct: 7 KGSDMEEKHQTLKELPVSERPYEKCEKNGTAMLSDAELLAVILRSGTKDQTAIDLATKVL 66
Query: 65 KRFA---TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
+ G+ LQ+I IGK A+++ ++ S+R+ A K
Sbjct: 67 SIDPFYEGILGICHTSREELQKIPGIGKVKAMQILCIAELSKRLASAKVEDKISFHSPAS 126
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ F
Sbjct: 127 IADYYMERMRHLSREEMILIFFN 149
>gi|257080642|ref|ZP_05575003.1| predicted protein [Enterococcus faecalis E1Sol]
gi|256988672|gb|EEU75974.1| predicted protein [Enterococcus faecalis E1Sol]
Length = 186
Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 30 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 89
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 90 RGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 149
>gi|296451131|ref|ZP_06892872.1| DNA repair protein RadC [Clostridium difficile NAP08]
gi|296880517|ref|ZP_06904479.1| DNA repair protein RadC [Clostridium difficile NAP07]
gi|296259952|gb|EFH06806.1| DNA repair protein RadC [Clostridium difficile NAP08]
gi|296428471|gb|EFH14356.1| DNA repair protein RadC [Clostridium difficile NAP07]
Length = 235
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 2/140 (1%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
+ K+ + + + R R++ L KG +L+ E+L ++L K+ +A ++
Sbjct: 4 LKKSFNSTIKVKEMAPEERPREKMLAKGVKSLSNAELLAILLRTGDKNKNAIELANYIIN 63
Query: 66 RF-ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
R + + + L I+ IG A ++K R+ +
Sbjct: 64 RDIQGIRHLEDMTIEELCNIDGIGLSKATQIKAALELGSRVASFKPIKY-KIRNPWDIQR 122
Query: 125 SVERHYPMKNANNFAYCFSI 144
F
Sbjct: 123 YYMDSLRYLKKEVFKAVLLN 142
>gi|289168032|ref|YP_003446301.1| DNA repair protein RadC [Streptococcus mitis B6]
gi|288907599|emb|CBJ22436.1| DNA repair protein RadC [Streptococcus mitis B6]
Length = 226
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++G AL+ E+L ++L + + IA+ +L ++L + L LQ +
Sbjct: 13 PRERLAKEGVEALSNQELLAILLRTGTRQANVFEIAQKVLNNLSSLTDLKKMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI K + + Q +++ K + +
Sbjct: 73 SGIGRVKAIELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGHKKQEHLVALYLN 132
>gi|164687854|ref|ZP_02211882.1| hypothetical protein CLOBAR_01498 [Clostridium bartlettii DSM
16795]
gi|164603129|gb|EDQ96594.1| hypothetical protein CLOBAR_01498 [Clostridium bartlettii DSM
16795]
Length = 235
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 2/124 (1%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHL 80
R R++ L KG +L+ E+L +I+ + + ++ + K + ++ +
Sbjct: 20 DQRPREKMLTKGVKSLSDAELLAIIIRTGTKKYNAIELSTQIFKEKLINIRDLYDISIEE 79
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L I+ IG A ++K R K P F
Sbjct: 80 LCSIDGIGLTKATQIKAAIELGVRASSYKPPKYKIKVPW-DIYKYYMEELRYAPKEIFKI 138
Query: 141 CFSI 144
Sbjct: 139 VLLN 142
>gi|299143817|ref|ZP_07036897.1| DNA repair protein RadC [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518302|gb|EFI42041.1| DNA repair protein RadC [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 240
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 8/147 (5%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M K S+ + + +R +++ ++ G ++L E+L LI+ K + I++ +L
Sbjct: 1 MEKKLSRTYSIKDMPIDDRPQEKLMKLGADSLTNAELLALIIRTGTKTKTSVEISQEILN 60
Query: 66 --------RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLT 117
+ + + + L E+ IG+ A + + RI + + K+ ++
Sbjct: 61 TISIGRDKNSSAISFLKNISMADLMEVKGIGESKAAMILAAITLASRINRESVFKKEKIS 120
Query: 118 PGQPCLISVERHYPMKNANNFAYCFSI 144
+ V F
Sbjct: 121 SPAILVDYVMDEMSSLQIEEFRIVVLN 147
>gi|237744553|ref|ZP_04575034.1| DNA repair protein radC [Fusobacterium sp. 7_1]
gi|229431782|gb|EEO41994.1| DNA repair protein radC [Fusobacterium sp. 7_1]
Length = 232
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
S D GH R+R++F G + A YEILEL+L IPRKDTKSIAK LL +F TL V
Sbjct: 2 SEKDNQGHRERIREKFFNNGIDGFAEYEILELLLTYCIPRKDTKSIAKELLNKFKTLDNV 61
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANW-------SIKKFLTPGQPCLISV 126
F A L I+ +GK LKL+ I K ++ L +
Sbjct: 62 FKADFDKLFAIDGLGKNSIAFLKLIGELPSIIYKDELKNKKLINKETLKISNKDILLKYL 121
Query: 127 ERHYPMKNANNFAYCFS 143
+ F +
Sbjct: 122 RNKIGYEEIEKFYVIYL 138
>gi|327405127|ref|YP_004345965.1| DNA repair protein RadC [Fluviicola taffensis DSM 16823]
gi|327320635|gb|AEA45127.1| DNA repair protein RadC [Fluviicola taffensis DSM 16823]
Length = 230
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 1/128 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-RFATLGGVFGAP 77
+R R++ + KG++ L+ E++ +++ K + + LL L
Sbjct: 11 WAEDDRPREKMILKGKSVLSDAELIAILIGTGSGDKSAVDLGRELLSLSDGCLYEFGKLR 70
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L L E+ IG+ A+ + +R + K + Q ++ ++
Sbjct: 71 LSQLCEVKGIGRSKAISILAALELGRRRKELRADKKPKIDSVQKAYEELKGYFTDLTHEE 130
Query: 138 FAYCFSIN 145
F + N
Sbjct: 131 FYILYLNN 138
>gi|325294835|ref|YP_004281349.1| DNA repair protein RadC [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065283|gb|ADY73290.1| DNA repair protein RadC [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 226
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 1/128 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ +R R++ L+ G L E+L +IL + K+ +++ +L+ F + G+ A
Sbjct: 7 KDLPESDRPREKLLKFGVENLTDSELLAIILRTGLKGKNVLDLSREILEYFGGIPGISRA 66
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L +GK A+ L +R L N +T + + +
Sbjct: 67 HIKELVSFKGLGKTKAVTLLASFEIGRRALLGN-GNSPKITSPEDVVNLIWPKVNNLPVE 125
Query: 137 NFAYCFSI 144
F
Sbjct: 126 IFGIVTLN 133
>gi|329956074|ref|ZP_08296845.1| putative DNA repair protein RadC [Bacteroides clarus YIT 12056]
gi|328524833|gb|EGF51887.1| putative DNA repair protein RadC [Bacteroides clarus YIT 12056]
Length = 239
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 36/123 (29%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAPLHLL 81
+R R++ + KG AL+ E+L +++ + ++ + L L + +
Sbjct: 24 DRPREKMMLKGAEALSDAELLAILIGSGNTEESAVALMQRTLACCNNDLNQLGKWEVRDF 83
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G ++ + +R + + + F
Sbjct: 84 SRFKGLGPAKSIAIMAALELGKRRRQQEHPERAVIHSSNDIYEIFHPLLCDLTIEEFWVL 143
Query: 142 FSI 144
Sbjct: 144 LLN 146
>gi|307709460|ref|ZP_07645917.1| DNA repair protein radC [Streptococcus mitis SK564]
gi|307619774|gb|EFN98893.1| DNA repair protein radC [Streptococcus mitis SK564]
Length = 226
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++G AL+ E+L ++L + IA+ +L ++L + L LQ +
Sbjct: 13 PRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLSNLSSLTDLKKMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI K + + Q +++ K + +
Sbjct: 73 SGIGRVKAIELQAMIELGHRIHKHETIEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 132
>gi|220904890|ref|YP_002480202.1| DNA repair protein RadC [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869189|gb|ACL49524.1| DNA repair protein RadC [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 229
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 1/134 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ S + GH RLR+RF ++ +A YE+LEL+L + RKDTK +AK LL+RF +
Sbjct: 4 TSGSIPSHTGHRARLRERF-ERDPAGMADYEVLELLLGYSLTRKDTKPLAKELLRRFGGI 62
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
GV A L + G + + R + ++ L Q +
Sbjct: 63 RGVMDARPDELLAVPGFGPGLMTFFTALRETYSRYTDSAVRKREVLATPQAVARMAQSRL 122
Query: 131 PMKNANNFAYCFSI 144
Sbjct: 123 AGCPHEECWLALVD 136
>gi|28895890|ref|NP_802240.1| DNA repair protein RadC [Streptococcus pyogenes SSI-1]
gi|73913741|sp|Q8K7J5|Y777_STRP3 RecName: Full=UPF0758 protein SpyM3_0777/SPs0978
gi|28811140|dbj|BAC64073.1| putative DNA repair protein [Streptococcus pyogenes SSI-1]
Length = 226
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 47/121 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G +L+ E+L ++L K ++ LL +L L LQ +
Sbjct: 13 PRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IGK A+E+K + RIL + ++ + + K + +
Sbjct: 73 AGIGKVKAIEIKAMIELVSRILATDKTLTDSVLTSVQVAEKIMAALGDKKQEHLVVLYLD 132
Query: 145 N 145
N
Sbjct: 133 N 133
>gi|329964659|ref|ZP_08301713.1| putative DNA repair protein RadC [Bacteroides fluxus YIT 12057]
gi|328525059|gb|EGF52111.1| putative DNA repair protein RadC [Bacteroides fluxus YIT 12057]
Length = 258
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAP 77
+R R++ +QKG AL+ E+ +++ + S+ + +L L +
Sbjct: 39 WAEKDRPREKMMQKGAEALSDAELFAILIGSGNTEESAVSLMQRILASSGNDLNQLGKWE 98
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ G +L + +R + + Q
Sbjct: 99 IQDFARFKGFGPAKSLTIMAALELGRRRNLQEHHERPTIHCSQDIYELFHPLLCDLAQEE 158
Query: 138 FAYCFSI 144
F
Sbjct: 159 FWILLMN 165
>gi|315641420|ref|ZP_07896493.1| DNA repair protein RadC [Enterococcus italicus DSM 15952]
gi|315482807|gb|EFU73330.1| DNA repair protein RadC [Enterococcus italicus DSM 15952]
Length = 226
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 48/121 (39%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R L+ GE AL+ E+L +IL +A+ +L+ F L + A L LQ
Sbjct: 12 RPRERLLEAGEGALSNQELLAIILRTGSKPYTVIDLAQMILEEFPDLYTLKDASLSELQR 71
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I +G ++ELK + +RI A+ + + + +
Sbjct: 72 IPGVGVVRSIELKAMMEFGRRIHLASQPKLGKVQSSYAIAQQLMEEMKDYQQEHLLCLYL 131
Query: 144 I 144
Sbjct: 132 N 132
>gi|322411656|gb|EFY02564.1| DNA repair protein RadC [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 226
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G AL+ E+L ++L K ++ LL +L L LQ +
Sbjct: 13 PRERLMRMGAEALSNQELLAILLRTGNKEKHVLELSSYLLSHLESLADFKKLSLQELQTL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IGK A+E+K + + RI ++ + + + K + +
Sbjct: 73 AGIGKVKAIEIKAMIELAARIQATEQTMSEKILSSVQIAEKMMAVLGDKKQEHLVVLYLD 132
>gi|319789619|ref|YP_004151252.1| DNA repair protein RadC [Thermovibrio ammonificans HB-1]
gi|317114121|gb|ADU96611.1| DNA repair protein RadC [Thermovibrio ammonificans HB-1]
Length = 222
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ +QKG AL E+L ++L K ++A +LK F L G+ A L L
Sbjct: 11 DRPREKLIQKGPAALTDSELLAILLRTGSRGKSALALASEILKEFNGLQGLTRASLRELT 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
I +G A+ ++ A + +A+ + +T + ++ + K +F
Sbjct: 71 SIKGLGTAKAV---TLAAALELARRASRREVRRITSPEEAFSVLKPLFGHKEVEHFGV 125
>gi|304391571|ref|ZP_07373513.1| putative DNA repair protein RadC-like protein [Ahrensia sp. R2A130]
gi|303295800|gb|EFL90158.1| putative DNA repair protein RadC-like protein [Ahrensia sp. R2A130]
Length = 259
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 2 EDFRMSKAPSKDSHLDYI--GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSI 59
E ++ + + + + GH +R R+RF ++ +AL YE+LE++LF+ + R DTK+I
Sbjct: 23 ESPQLPILKTAAAKPENLLLGHRDRARNRFEKR-PDALEDYEVLEILLFQSVARADTKAI 81
Query: 60 AKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPG 119
AK LLK+F ++ GV GA LQ++ ++G R+A L +V + R LK L
Sbjct: 82 AKRLLKKFGSVRGVLGASSAELQKVEKVGPRMAENLAVVGEITSRALKDRIEGPVDLGSW 141
Query: 120 QPCLISVERHYPMKNANNFAYCFSI 144
+ + +
Sbjct: 142 SKVIAYCQSRMSELKNERLRVLYLN 166
>gi|210623724|ref|ZP_03294008.1| hypothetical protein CLOHIR_01959 [Clostridium hiranonis DSM 13275]
gi|210153412|gb|EEA84418.1| hypothetical protein CLOHIR_01959 [Clostridium hiranonis DSM 13275]
Length = 225
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 2/131 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-RFATLGGV 73
+ Y R++ L+ G +L+ E++ ++L K +A LLK + +
Sbjct: 3 KVKYSVKDEFPREKMLKDGVESLSNAELIAVLLRTGSKNKTVIELANELLKVDHEGIRFL 62
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
+ + L EI IG A +K R+ ++ + P
Sbjct: 63 KSSSIEELCEIEGIGISKATLIKAALELGVRVAESEIVRYQVKNPW-DIYKYYMESMRYL 121
Query: 134 NANNFAYCFSI 144
F
Sbjct: 122 KEEIFKTVLLN 132
>gi|147669191|ref|YP_001214009.1| DNA repair protein RadC [Dehalococcoides sp. BAV1]
gi|146270139|gb|ABQ17131.1| DNA replication and repair protein RadC [Dehalococcoides sp. BAV1]
Length = 228
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 4/139 (2%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
MS PS R R+R G AL+ E+L +IL R + + A+ L+
Sbjct: 1 MSPVPSIRDLPLA----ERPRERLQSLGAGALSSVELLAVILGRGVAGEPVLQSAQRLIA 56
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
F G+ A + L ++ IG A +LK ++R + + +
Sbjct: 57 HFGGPSGIACASVEELSKLKGIGLAKACQLKAAFELAKRAGGIKGEYQPCIKTPEDVFQI 116
Query: 126 VERHYPMKNANNFAYCFSI 144
+ + F
Sbjct: 117 IYPLVCDEKKEYFFCLMLD 135
>gi|256027337|ref|ZP_05441171.1| DNA repair protein radC [Fusobacterium sp. D11]
gi|289765306|ref|ZP_06524684.1| DNA repair protein radC [Fusobacterium sp. D11]
gi|289716861|gb|EFD80873.1| DNA repair protein radC [Fusobacterium sp. D11]
Length = 232
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
S D GH R+R++F G + A YEILEL+L IPRKDTKSIAK LL +F TL V
Sbjct: 2 SEKDNQGHRERIREKFFNNGIDGFAEYEILELLLTYCIPRKDTKSIAKELLNKFKTLDNV 61
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANW-------SIKKFLTPGQPCLISV 126
F A L I+ +GK LKL+ I K ++ L +
Sbjct: 62 FKADFDKLFAIDGLGKNSIAFLKLIGELPSIIYKDELKNKKLINKETLKISNKDILLKYL 121
Query: 127 ERHYPMKNANNFAYCFS 143
+ F +
Sbjct: 122 RNKIGYEEIEKFYVIYL 138
>gi|51891509|ref|YP_074200.1| DNA repair protein [Symbiobacterium thermophilum IAM 14863]
gi|81692227|sp|Q67SI7|Y371_SYMTH RecName: Full=UPF0758 protein STH371
gi|51855198|dbj|BAD39356.1| DNA repair protein [Symbiobacterium thermophilum IAM 14863]
Length = 234
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 8/139 (5%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF----- 67
L + +R R+R L+ G L+ E+L ++L + +A+ LL
Sbjct: 2 TPSLKRLPEADRPRERLLRLGPEKLSDVELLAILLGTGSRGRSVIEVARDLLHHCEAKDP 61
Query: 68 -ATLGGVFGA-PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
L + + + +G + R A L +
Sbjct: 62 GGGLRALLHLRDAERSELVKGLGPAKVCTILAGLHLGLRASAAPLRRVD-LCNPRAVFEF 120
Query: 126 VERHYPMKNANNFAYCFSI 144
+ + F
Sbjct: 121 LAPRMAHLSIEQFHVILLN 139
>gi|315613236|ref|ZP_07888146.1| DNA repair protein RadC [Streptococcus sanguinis ATCC 49296]
gi|315314798|gb|EFU62840.1| DNA repair protein RadC [Streptococcus sanguinis ATCC 49296]
Length = 226
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G AL+ E+L ++L + + IA+ +L +L + L LQ +
Sbjct: 13 PRERLVKEGVEALSNQELLAILLRTGTRQANVFEIAQRVLNSLNSLTDLKNMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ V RI K + + Q +++ K + +
Sbjct: 73 SGIGRIKAIELQAVIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 132
>gi|229547599|ref|ZP_04436324.1| DNA repair protein RadC [Enterococcus faecalis TX1322]
gi|229548193|ref|ZP_04436918.1| DNA repair protein RadC [Enterococcus faecalis ATCC 29200]
gi|307275090|ref|ZP_07556244.1| DNA repair protein RadC [Enterococcus faecalis TX2134]
gi|307287379|ref|ZP_07567438.1| DNA repair protein RadC [Enterococcus faecalis TX0109]
gi|312952214|ref|ZP_07771092.1| DNA repair protein RadC [Enterococcus faecalis TX0102]
gi|229306672|gb|EEN72668.1| DNA repair protein RadC [Enterococcus faecalis ATCC 29200]
gi|229307289|gb|EEN73276.1| DNA repair protein RadC [Enterococcus faecalis TX1322]
gi|306501552|gb|EFM70848.1| DNA repair protein RadC [Enterococcus faecalis TX0109]
gi|306508208|gb|EFM77324.1| DNA repair protein RadC [Enterococcus faecalis TX2134]
gi|310629870|gb|EFQ13153.1| DNA repair protein RadC [Enterococcus faecalis TX0102]
gi|315028140|gb|EFT40072.1| DNA repair protein RadC [Enterococcus faecalis TX2137]
gi|315030879|gb|EFT42811.1| DNA repair protein RadC [Enterococcus faecalis TX4000]
gi|315032296|gb|EFT44228.1| DNA repair protein RadC [Enterococcus faecalis TX0017]
gi|315036225|gb|EFT48157.1| DNA repair protein RadC [Enterococcus faecalis TX0027]
gi|315148798|gb|EFT92814.1| DNA repair protein RadC [Enterococcus faecalis TX4244]
gi|315154537|gb|EFT98553.1| DNA repair protein RadC [Enterococcus faecalis TX0031]
gi|315160102|gb|EFU04119.1| DNA repair protein RadC [Enterococcus faecalis TX0312]
gi|315163278|gb|EFU07295.1| DNA repair protein RadC [Enterococcus faecalis TX0645]
gi|315165917|gb|EFU09934.1| DNA repair protein RadC [Enterococcus faecalis TX1302]
gi|315169324|gb|EFU13341.1| DNA repair protein RadC [Enterococcus faecalis TX1341]
gi|315171821|gb|EFU15838.1| DNA repair protein RadC [Enterococcus faecalis TX1342]
gi|327536079|gb|AEA94913.1| DNA repair protein RadC [Enterococcus faecalis OG1RF]
Length = 240
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 25 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 84
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 85 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 144
>gi|323342146|ref|ZP_08082379.1| DNA repair protein RadC [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464571|gb|EFY09764.1| DNA repair protein RadC [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 235
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 3/126 (2%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G N L E++ ++L K+ S+A +L + + L +I
Sbjct: 19 PREKLLVLGPNKLTDEELVAILLRTGTRNKNVVSLASEVLTSIGGIQNLIKIQYSQLSKI 78
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS- 143
+ + L V +RI+ K L+ + + + F F
Sbjct: 79 KGMKQAKCTTLLAVHELLRRIVMPFPGEKIKLSSCDRIVRWLNLEIGFEEQELFRVLFLS 138
Query: 144 --INII 147
N+I
Sbjct: 139 TQNNLI 144
>gi|294508375|ref|YP_003572433.1| DNA repair protein RadC [Salinibacter ruber M8]
gi|294344703|emb|CBH25481.1| DNA repair protein RadC [Salinibacter ruber M8]
Length = 258
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 15/156 (9%)
Query: 7 SKAPSKDSHL--------DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKD--- 55
+P ++ R++ L G L+ E+L L+L D
Sbjct: 14 PSSPEGSEEPALLYRVPIHEWDESDQPREKLLTHGPTVLSDAEVLALLLGSGTRTSDGPV 73
Query: 56 -TKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWS-IK 113
+ +ALL+ + +L V L +G A +L A +R+ +
Sbjct: 74 SAVELGRALLQSYGSLHEVSQRKPKELTRTRGVGPAKATKLAAAFEAGRRVESQRQQDER 133
Query: 114 KFLTPGQPCLISVERHYPMKNANNFAYCFSI--NII 147
+T + F N+I
Sbjct: 134 MQVTCPADVADVYGPLLRDLDKEVFKVVHLNTANVI 169
>gi|307272661|ref|ZP_07553909.1| DNA repair protein RadC [Enterococcus faecalis TX0855]
gi|306510656|gb|EFM79678.1| DNA repair protein RadC [Enterococcus faecalis TX0855]
Length = 240
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L +
Sbjct: 25 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAV 84
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 85 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 144
>gi|306829577|ref|ZP_07462767.1| DNA repair protein RadC [Streptococcus mitis ATCC 6249]
gi|304428663|gb|EFM31753.1| DNA repair protein RadC [Streptococcus mitis ATCC 6249]
Length = 226
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G AL+ E+L ++L + + IA+ +L ++ + L LQ +
Sbjct: 13 PRERLVKEGVEALSNQELLAILLRTGTRKANVFEIAQKVLNSLNSITDLKKMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ V R+ K + + Q +++ K + +
Sbjct: 73 SGIGRIKAIELQAVIELGNRVHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 132
>gi|331266304|ref|YP_004325934.1| DNA repair protein RadC [Streptococcus oralis Uo5]
gi|326682976|emb|CBZ00593.1| DNA repair protein RadC [Streptococcus oralis Uo5]
Length = 226
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G AL+ E+L ++L + + IA+ +L +L + L LQ +
Sbjct: 13 PRERLVKEGVEALSNQELLAILLRTGTRQANVFEIAQRVLNSLNSLTDLKNMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ V RI K + + Q +++ K + +
Sbjct: 73 SGIGRIKAIELQAVIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 132
>gi|291522255|emb|CBK80548.1| DNA replication and repair protein RadC [Coprococcus catus GD/7]
Length = 234
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV---FGAPLH 79
R ++ + G L+ E+L +IL +A LL + G+ G L
Sbjct: 17 ERPYEKCEKNGAGTLSDAELLAIILKTGTRGDKVMDLAVQLLNLNPSCPGLEGIMGLELA 76
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
Q+I IG+ A++L V S+R+ + +S T Q +
Sbjct: 77 DFQKIRGIGRVKAVQLAAVCELSRRMSRIQFSESYAFTTPQSIADYYMAYMCRLGHEEVH 136
Query: 140 YCFSI 144
Sbjct: 137 VMMLD 141
>gi|315303311|ref|ZP_07873944.1| putative DNA repair protein [Listeria ivanovii FSL F6-596]
gi|313628326|gb|EFR96826.1| putative DNA repair protein [Listeria ivanovii FSL F6-596]
Length = 224
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 43/122 (35%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R++ G AL+ E++ +I+ + +IA ++ +F + + A L Q
Sbjct: 10 EKPREKLQNYGIEALSTSELVAIIIETGTKSESVLTIANRIIMKFKHVAEMQYASLEEFQ 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
IN IG A ++ +RI + + V +F F
Sbjct: 70 LINGIGIAKASKIMAAIELGKRISLVTEREEIVIRCPGDAAKLVMPELAFLFQEHFHCIF 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|262065984|ref|ZP_06025596.1| DNA repair protein RadC [Fusobacterium periodonticum ATCC 33693]
gi|291380341|gb|EFE87859.1| DNA repair protein RadC [Fusobacterium periodonticum ATCC 33693]
Length = 237
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH R+R +FL+ G N L YE+LEL+LF +IPR+DTK+IAK L+ +F TL V A
Sbjct: 13 GHRERVRKKFLENGFNGLEDYEVLELLLFYVIPRRDTKAIAKELMAKFKTLANVLKADNK 72
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-------LTPGQPCLISVERHYPM 132
L+ IN +G LK++ ++I + +K +T + L +
Sbjct: 73 ELKTINGLGDVAITFLKMMGALPEKIYEDKLKNEKIIKDDTNKITNKEILLNFLRNKIGY 132
Query: 133 KNANNFAYCFS 143
+N F +
Sbjct: 133 ENVEKFYVIYL 143
>gi|73669792|ref|YP_305807.1| DNA repair protein RadC [Methanosarcina barkeri str. Fusaro]
gi|121729469|sp|Q46A65|Y2303_METBF RecName: Full=UPF0758 protein Mbar_A2303
gi|72396954|gb|AAZ71227.1| DNA replication and repair protein RadC [Methanosarcina barkeri
str. Fusaro]
Length = 229
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ I R R+R ++ G +L+ E+L +IL +++ S++ + + ++ +
Sbjct: 7 RIQDIPEEERPRERLIRNGPESLSNSELLGVILRTGSNKENVVSLSSRIFSEY-SIKQLS 65
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A + L +++ +GK A ++ V ++R+ K+ + + + +
Sbjct: 66 LANVSRLMKVHGVGKAKAAQIAAVFELARRLETFVEEPKRKVCSPKDVYTLMYPKMREQK 125
Query: 135 ANNFAYCFSI 144
F
Sbjct: 126 KEKFITLCLD 135
>gi|289434829|ref|YP_003464701.1| DNA repair protein RadC [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171073|emb|CBH27615.1| DNA repair protein RadC [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 224
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R++ G AL+ E++ +I+ + +IA ++ +F + + A L LQ
Sbjct: 10 EKPREKLQNYGIEALSTSELVAIIIETGTKNESVLTIANRIIMKFKHVAEMQYASLEELQ 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
IN IG A ++ +RI + + + V +F F
Sbjct: 70 LINGIGLAKASKIMAAVELGKRISLVTEREEIVIRCPDDAVKLVMPELAFLFQEHFHCIF 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|149006239|ref|ZP_01829951.1| DNA repair protein RadC [Streptococcus pneumoniae SP18-BS74]
gi|168491982|ref|ZP_02716125.1| DNA repair protein RadC [Streptococcus pneumoniae CDC0288-04]
gi|168494522|ref|ZP_02718665.1| DNA repair protein RadC [Streptococcus pneumoniae CDC3059-06]
gi|225854584|ref|YP_002736096.1| DNA repair protein RadC [Streptococcus pneumoniae JJA]
gi|307127380|ref|YP_003879411.1| DNA repair protein RadC [Streptococcus pneumoniae 670-6B]
gi|254789664|sp|C1CE75|Y1027_STRZJ RecName: Full=UPF0758 protein SPJ_1027
gi|147762016|gb|EDK68978.1| DNA repair protein RadC [Streptococcus pneumoniae SP18-BS74]
gi|183573793|gb|EDT94321.1| DNA repair protein RadC [Streptococcus pneumoniae CDC0288-04]
gi|183575616|gb|EDT96144.1| DNA repair protein RadC [Streptococcus pneumoniae CDC3059-06]
gi|225722254|gb|ACO18107.1| DNA repair protein RadC [Streptococcus pneumoniae JJA]
gi|306484442|gb|ADM91311.1| DNA repair protein RadC [Streptococcus pneumoniae 670-6B]
gi|332075043|gb|EGI85514.1| hypothetical protein SPAR148_1048 [Streptococcus pneumoniae
GA17545]
Length = 226
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++G AL+ E+L ++L + IA+ +L ++L + L LQ +
Sbjct: 13 PRERLAKEGVEALSNQELLAILLRTGTRQVSVFEIAQKVLNNLSSLTDLKKMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI K + + Q +++ K + +
Sbjct: 73 SGIGRVKAIELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 132
>gi|116516612|ref|YP_816450.1| DNA repair protein RadC [Streptococcus pneumoniae D39]
gi|39931955|sp|Q8DPU7|Y996_STRR6 RecName: Full=UPF0758 protein spr0996
gi|122278664|sp|Q04KJ8|Y975_STRP2 RecName: Full=UPF0758 protein SPD_0975
gi|116077188|gb|ABJ54908.1| DNA repair protein RadC [Streptococcus pneumoniae D39]
Length = 226
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++G AL+ E+L ++L + IA+ +L ++L + L LQ +
Sbjct: 13 PRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI K + + Q +++ K + +
Sbjct: 73 SGIGRVKAIELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 132
>gi|15900956|ref|NP_345560.1| DNA repair protein RadC [Streptococcus pneumoniae TIGR4]
gi|111657603|ref|ZP_01408339.1| hypothetical protein SpneT_02001213 [Streptococcus pneumoniae
TIGR4]
gi|148985060|ref|ZP_01818303.1| DNA repair protein RadC [Streptococcus pneumoniae SP3-BS71]
gi|148989131|ref|ZP_01820521.1| DNA repair protein RadC [Streptococcus pneumoniae SP6-BS73]
gi|148994162|ref|ZP_01823477.1| DNA repair protein RadC [Streptococcus pneumoniae SP9-BS68]
gi|148998354|ref|ZP_01825796.1| DNA repair protein RadC [Streptococcus pneumoniae SP11-BS70]
gi|149003796|ref|ZP_01828628.1| DNA repair protein RadC [Streptococcus pneumoniae SP14-BS69]
gi|149012918|ref|ZP_01833831.1| DNA repair protein RadC [Streptococcus pneumoniae SP19-BS75]
gi|149024890|ref|ZP_01836291.1| DNA repair protein RadC [Streptococcus pneumoniae SP23-BS72]
gi|168483163|ref|ZP_02708115.1| DNA repair protein RadC [Streptococcus pneumoniae CDC1873-00]
gi|168486495|ref|ZP_02711003.1| DNA repair protein RadC [Streptococcus pneumoniae CDC1087-00]
gi|168488931|ref|ZP_02713130.1| DNA repair protein RadC [Streptococcus pneumoniae SP195]
gi|168576187|ref|ZP_02722081.1| DNA repair protein RadC [Streptococcus pneumoniae MLV-016]
gi|169834408|ref|YP_001694513.1| DNA repair protein RadC [Streptococcus pneumoniae Hungary19A-6]
gi|194397499|ref|YP_002037719.1| DNA repair protein RadC [Streptococcus pneumoniae G54]
gi|221231830|ref|YP_002510982.1| DNA repair protein RadC [Streptococcus pneumoniae ATCC 700669]
gi|225856732|ref|YP_002738243.1| DNA repair protein RadC [Streptococcus pneumoniae P1031]
gi|225858901|ref|YP_002740411.1| DNA repair protein RadC [Streptococcus pneumoniae 70585]
gi|225861054|ref|YP_002742563.1| DNA repair protein RadC [Streptococcus pneumoniae Taiwan19F-14]
gi|237650761|ref|ZP_04525013.1| DNA repair protein RadC [Streptococcus pneumoniae CCRI 1974]
gi|237822348|ref|ZP_04598193.1| DNA repair protein RadC [Streptococcus pneumoniae CCRI 1974M2]
gi|298230847|ref|ZP_06964528.1| DNA repair protein RadC [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255794|ref|ZP_06979380.1| DNA repair protein RadC [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502896|ref|YP_003724836.1| DNA repair protein RadC [Streptococcus pneumoniae TCH8431/19A]
gi|303254201|ref|ZP_07340313.1| DNA repair protein RadC [Streptococcus pneumoniae BS455]
gi|303259751|ref|ZP_07345726.1| DNA repair protein RadC [Streptococcus pneumoniae SP-BS293]
gi|303262926|ref|ZP_07348861.1| DNA repair protein RadC [Streptococcus pneumoniae SP14-BS292]
gi|303264889|ref|ZP_07350805.1| DNA repair protein RadC [Streptococcus pneumoniae BS397]
gi|303266869|ref|ZP_07352747.1| DNA repair protein RadC [Streptococcus pneumoniae BS457]
gi|303268906|ref|ZP_07354691.1| DNA repair protein RadC [Streptococcus pneumoniae BS458]
gi|307067729|ref|YP_003876695.1| DNA repair protein [Streptococcus pneumoniae AP200]
gi|25009039|sp|Q97QW0|Y1088_STRPN RecName: Full=UPF0758 protein SP_1088
gi|238688293|sp|B1IBM8|Y1181_STRPI RecName: Full=UPF0758 protein SPH_1181
gi|238690819|sp|B5E4K3|Y1010_STRP4 RecName: Full=UPF0758 protein SPG_1010
gi|254789661|sp|C1C785|Y1163_STRP7 RecName: Full=UPF0758 protein SP70585_1163
gi|254789662|sp|B8ZPT5|Y1009_STRPJ RecName: Full=UPF0758 protein SPN23F10090
gi|254789665|sp|C1CKF5|Y1095_STRZP RecName: Full=UPF0758 protein SPP_1095
gi|254789666|sp|C1CRJ1|Y1135_STRZT RecName: Full=UPF0758 protein SPT_1135
gi|14972563|gb|AAK75200.1| DNA repair protein RadC [Streptococcus pneumoniae TIGR4]
gi|147755751|gb|EDK62796.1| DNA repair protein RadC [Streptococcus pneumoniae SP11-BS70]
gi|147758242|gb|EDK65244.1| DNA repair protein RadC [Streptococcus pneumoniae SP14-BS69]
gi|147763207|gb|EDK70147.1| DNA repair protein RadC [Streptococcus pneumoniae SP19-BS75]
gi|147922758|gb|EDK73875.1| DNA repair protein RadC [Streptococcus pneumoniae SP3-BS71]
gi|147925354|gb|EDK76432.1| DNA repair protein RadC [Streptococcus pneumoniae SP6-BS73]
gi|147927405|gb|EDK78435.1| DNA repair protein RadC [Streptococcus pneumoniae SP9-BS68]
gi|147929513|gb|EDK80507.1| DNA repair protein RadC [Streptococcus pneumoniae SP23-BS72]
gi|168996910|gb|ACA37522.1| DNA repair protein RadC [Streptococcus pneumoniae Hungary19A-6]
gi|172043536|gb|EDT51582.1| DNA repair protein RadC [Streptococcus pneumoniae CDC1873-00]
gi|183570483|gb|EDT91011.1| DNA repair protein RadC [Streptococcus pneumoniae CDC1087-00]
gi|183572425|gb|EDT92953.1| DNA repair protein RadC [Streptococcus pneumoniae SP195]
gi|183577950|gb|EDT98478.1| DNA repair protein RadC [Streptococcus pneumoniae MLV-016]
gi|194357166|gb|ACF55614.1| DNA repair protein RadC [Streptococcus pneumoniae G54]
gi|220674290|emb|CAR68832.1| DNA repair protein RadC [Streptococcus pneumoniae ATCC 700669]
gi|225720674|gb|ACO16528.1| DNA repair protein RadC [Streptococcus pneumoniae 70585]
gi|225724639|gb|ACO20491.1| DNA repair protein RadC [Streptococcus pneumoniae P1031]
gi|225728037|gb|ACO23888.1| DNA repair protein RadC [Streptococcus pneumoniae Taiwan19F-14]
gi|298238491|gb|ADI69622.1| DNA repair protein RadC [Streptococcus pneumoniae TCH8431/19A]
gi|301794205|emb|CBW36624.1| DNA repair protein RadC [Streptococcus pneumoniae INV104]
gi|301800059|emb|CBW32654.1| DNA repair protein RadC [Streptococcus pneumoniae OXC141]
gi|301802020|emb|CBW34749.1| DNA repair protein RadC [Streptococcus pneumoniae INV200]
gi|302598872|gb|EFL65906.1| DNA repair protein RadC [Streptococcus pneumoniae BS455]
gi|302635903|gb|EFL66403.1| DNA repair protein RadC [Streptococcus pneumoniae SP14-BS292]
gi|302638956|gb|EFL69416.1| DNA repair protein RadC [Streptococcus pneumoniae SP-BS293]
gi|302641524|gb|EFL71886.1| DNA repair protein RadC [Streptococcus pneumoniae BS458]
gi|302643567|gb|EFL73836.1| DNA repair protein RadC [Streptococcus pneumoniae BS457]
gi|302645577|gb|EFL75808.1| DNA repair protein RadC [Streptococcus pneumoniae BS397]
gi|306409266|gb|ADM84693.1| DNA repair protein [Streptococcus pneumoniae AP200]
gi|327389354|gb|EGE87699.1| hypothetical protein SPAR5_1040 [Streptococcus pneumoniae GA04375]
gi|332073448|gb|EGI83927.1| RadC, DNA repair family protein [Streptococcus pneumoniae GA17570]
gi|332075422|gb|EGI85891.1| hypothetical protein SPAR68_1132 [Streptococcus pneumoniae GA41301]
Length = 226
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++G AL+ E+L ++L + IA+ +L ++L + L LQ +
Sbjct: 13 PRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI K + + Q +++ K + +
Sbjct: 73 SGIGRVKAIELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 132
>gi|315576278|gb|EFU88469.1| DNA repair protein RadC [Enterococcus faecalis TX0309B]
Length = 240
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 25 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 84
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 85 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 144
>gi|114567158|ref|YP_754312.1| DNA repair protein RadC [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122317861|sp|Q0AWG3|Y1642_SYNWW RecName: Full=UPF0758 protein Swol_1642
gi|114338093|gb|ABI68941.1| DNA repair protein RadC [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 235
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 6/127 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAPLHLL 81
R R++ + +GE+ L E+L ++L + +A+ LL R L + A L L
Sbjct: 17 MRPREKLIARGEDKLDEAELLAIVLGSGTREMNALELARQLLARHGGSLRFLMSATLEEL 76
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP----CLISVERHYPMKNANN 137
IG A+ +K +R++ N +++ + + + +
Sbjct: 77 TAEKGIGMAKAVSIKAAIEMGRRVV-GNIQLRRIIKSPEDVQEAVRELAMEEMRHYDREH 135
Query: 138 FAYCFSI 144
F +
Sbjct: 136 FRVLYLD 142
>gi|315582770|gb|EFU94961.1| DNA repair protein RadC [Enterococcus faecalis TX0309A]
Length = 240
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 25 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 84
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 85 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 144
>gi|238764328|ref|ZP_04625279.1| DNA repair protein radC [Yersinia kristensenii ATCC 33638]
gi|238697479|gb|EEP90245.1| DNA repair protein radC [Yersinia kristensenii ATCC 33638]
Length = 123
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH R++ L+ G L E+L + L IP +A+ L++ F +L + A
Sbjct: 4 WYGHIA-PREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMRMAEYLIEEFGSLHELISAD 62
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+L IG +++ ++ + R ++ + L ++ +
Sbjct: 63 YQVLCAKKGIGVSKYSQIQAIAELAGRCFSSHLMRESALLNADITQKFLQNILSHREREV 122
Query: 138 F 138
F
Sbjct: 123 F 123
>gi|307704752|ref|ZP_07641648.1| DNA repair protein radC [Streptococcus mitis SK597]
gi|307708771|ref|ZP_07645233.1| DNA repair protein RadC [Streptococcus mitis NCTC 12261]
gi|307615137|gb|EFN94348.1| DNA repair protein RadC [Streptococcus mitis NCTC 12261]
gi|307621661|gb|EFO00702.1| DNA repair protein radC [Streptococcus mitis SK597]
Length = 226
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R Q+G AL+ E+L ++L + IA+ +L ++L + L LQ +
Sbjct: 13 PRERLAQEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI K + + Q +++ K + +
Sbjct: 73 SGIGRVKAIELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 132
>gi|307290160|ref|ZP_07570079.1| putative DNA repair protein RadC [Enterococcus faecalis TX0411]
gi|312902611|ref|ZP_07761816.1| putative DNA repair protein RadC [Enterococcus faecalis TX0635]
gi|306498788|gb|EFM68286.1| putative DNA repair protein RadC [Enterococcus faecalis TX0411]
gi|310633949|gb|EFQ17232.1| putative DNA repair protein RadC [Enterococcus faecalis TX0635]
gi|315145982|gb|EFT89998.1| putative DNA repair protein RadC [Enterococcus faecalis TX2141]
gi|315578970|gb|EFU91161.1| putative DNA repair protein RadC [Enterococcus faecalis TX0630]
Length = 191
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 25 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 84
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 85 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 144
>gi|288817942|ref|YP_003432289.1| DNA repair protein [Hydrogenobacter thermophilus TK-6]
gi|288787341|dbj|BAI69088.1| DNA repair protein [Hydrogenobacter thermophilus TK-6]
gi|308751539|gb|ADO45022.1| DNA repair protein RadC [Hydrogenobacter thermophilus TK-6]
Length = 225
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 52/133 (39%), Gaps = 6/133 (4%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K L I R R++ G +L+ E+L L+L +D S+++ ++K
Sbjct: 3 KSKRLKDIPKELRPREKIKSLGSQSLSDEELLALVLGSGTKEEDVLSLSRRIIKL--GWE 60
Query: 72 GVFGAPLHL-LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+ ++ ++EI IG+ A ++K + S+R+ + + ++
Sbjct: 61 RLKSMSVNELIKEIKGIGEAKACQIKALIELSRRMY--EPHAHTVINSPEDVYNLLKDKM 118
Query: 131 PMKNANNFAYCFS 143
+ + +
Sbjct: 119 DNR-REHLWALYL 130
>gi|220929963|ref|YP_002506872.1| DNA repair protein RadC [Clostridium cellulolyticum H10]
gi|220000291|gb|ACL76892.1| DNA repair protein RadC [Clostridium cellulolyticum H10]
Length = 229
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 2/124 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK--RFATLGGVFGAPLHL 80
R ++ + G +L+ E+L +I+ +A+ +LK + L + +
Sbjct: 13 ERPYEKMSEVGAESLSNAELLAIIIKTGTKSYTAVELAQMVLKLSQDGRLSSLNNVSIEQ 72
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
++ IG+ A+++K V S+R+ +N ++ + + F
Sbjct: 73 FMKVKGIGRVKAIQIKAVLEFSKRVATSNGIVRHVVNSPGDVSNLMMEEMRYLKKEMFKA 132
Query: 141 CFSI 144
Sbjct: 133 ILLD 136
>gi|149280605|ref|ZP_01886720.1| DNA repair protein [Pedobacter sp. BAL39]
gi|149228650|gb|EDM34054.1| DNA repair protein [Pedobacter sp. BAL39]
Length = 232
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 37/129 (28%), Gaps = 1/129 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFG 75
+R R++ ++ G L E++ +++ + ++K +L L +
Sbjct: 11 KDWAEADRPREKLMKHGRRHLTDAELVAILINSGNKDESAVDLSKRILASCGNDLDALGR 70
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L IG+ A+ + +R + + +
Sbjct: 71 LSVKELSTFRGIGEAKAIAIVAALELGRRRKNTEAKAVVQIRSSADSYQQLLPVFSDLTH 130
Query: 136 NNFAYCFSI 144
F
Sbjct: 131 EEFWILLLN 139
>gi|89895926|ref|YP_519413.1| hypothetical protein DSY3180 [Desulfitobacterium hafniense Y51]
gi|219670358|ref|YP_002460793.1| DNA repair protein RadC [Desulfitobacterium hafniense DCB-2]
gi|122481851|sp|Q24SM3|Y3180_DESHY RecName: Full=UPF0758 protein DSY3180
gi|254789647|sp|B8FVF5|Y4352_DESHD RecName: Full=UPF0758 protein Dhaf_4352
gi|89335374|dbj|BAE84969.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540618|gb|ACL22357.1| DNA repair protein RadC [Desulfitobacterium hafniense DCB-2]
Length = 227
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 47/116 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R Q G +AL+ EIL ++L + ++ ++ LL L G+ +H L
Sbjct: 15 PRERLFQYGADALSNREILAILLRTGVKGENVLDFSERLLTETGGLSGLARLTVHELTRY 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
+G A ELK +R + ++ ++ + Q V + +F
Sbjct: 75 RGMGTAKAAELKAALELGRRSVSSDPLVRPVINSPQDIAHLVMEEMRYLDREHFRV 130
>gi|313623636|gb|EFR93796.1| putative DNA repair protein [Listeria innocua FSL J1-023]
Length = 224
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R++ G AL+ E++ LI+ + +IA ++ +F + + A + Q
Sbjct: 10 EKPREKLQNYGIEALSTSELVALIIETGTKTESVLTIANRIMMKFKHIAEMQYASIEEFQ 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+N IG A ++ +RI + + + + V +F F
Sbjct: 70 LVNGIGIAKASKIMAAVELGKRISLVTEQKEIVIRCPEDAVKLVMPELAFLFQEHFHCIF 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|315174741|gb|EFU18758.1| DNA repair protein RadC [Enterococcus faecalis TX1346]
Length = 232
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D S+A LLK+F L + A L+ L I
Sbjct: 17 PRERLLAIGEKALSNQELLAILLRTGSKEADVMSVAATLLKQFKQLSYLQQATLNELMAI 76
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 77 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 136
>gi|322376781|ref|ZP_08051274.1| DNA repair protein RadC [Streptococcus sp. M334]
gi|321282588|gb|EFX59595.1| DNA repair protein RadC [Streptococcus sp. M334]
Length = 226
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R Q+G AL+ E+L ++L + IA+ +L ++L + L LQ +
Sbjct: 13 PRERLAQEGVEALSNQELLAILLRTGTRQSSVFEIAQKVLSNLSSLTDLKKMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI K + + Q +++ K + +
Sbjct: 73 SGIGRVKAIELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 132
>gi|227518208|ref|ZP_03948257.1| DNA repair protein RadC [Enterococcus faecalis TX0104]
gi|256618290|ref|ZP_05475136.1| DNA repair protein RadC [Enterococcus faecalis ATCC 4200]
gi|256852483|ref|ZP_05557859.1| DNA repair protein RadC [Enterococcus faecalis T8]
gi|256958161|ref|ZP_05562332.1| DNA repair protein RadC [Enterococcus faecalis DS5]
gi|257077434|ref|ZP_05571795.1| DNA repair protein RadC [Enterococcus faecalis JH1]
gi|257088067|ref|ZP_05582428.1| DNA repair protein RadC [Enterococcus faecalis D6]
gi|257091146|ref|ZP_05585507.1| DNA repair protein radC [Enterococcus faecalis CH188]
gi|257417093|ref|ZP_05594087.1| DNA repair protein RadC [Enterococcus faecalis AR01/DG]
gi|257417807|ref|ZP_05594801.1| DNA repair protein radC [Enterococcus faecalis T11]
gi|294779645|ref|ZP_06745036.1| DNA repair protein RadC [Enterococcus faecalis PC1.1]
gi|300860938|ref|ZP_07107025.1| DNA repair protein RadC [Enterococcus faecalis TUSoD Ef11]
gi|227074364|gb|EEI12327.1| DNA repair protein RadC [Enterococcus faecalis TX0104]
gi|256597817|gb|EEU16993.1| DNA repair protein RadC [Enterococcus faecalis ATCC 4200]
gi|256712337|gb|EEU27369.1| DNA repair protein RadC [Enterococcus faecalis T8]
gi|256948657|gb|EEU65289.1| DNA repair protein RadC [Enterococcus faecalis DS5]
gi|256985464|gb|EEU72766.1| DNA repair protein RadC [Enterococcus faecalis JH1]
gi|256996097|gb|EEU83399.1| DNA repair protein RadC [Enterococcus faecalis D6]
gi|256999958|gb|EEU86478.1| DNA repair protein radC [Enterococcus faecalis CH188]
gi|257158921|gb|EEU88881.1| DNA repair protein RadC [Enterococcus faecalis ARO1/DG]
gi|257159635|gb|EEU89595.1| DNA repair protein radC [Enterococcus faecalis T11]
gi|294453302|gb|EFG21713.1| DNA repair protein RadC [Enterococcus faecalis PC1.1]
gi|295114297|emb|CBL32934.1| DNA replication and repair protein RadC [Enterococcus sp. 7L76]
gi|300849977|gb|EFK77727.1| DNA repair protein RadC [Enterococcus faecalis TUSoD Ef11]
gi|315151663|gb|EFT95679.1| DNA repair protein RadC [Enterococcus faecalis TX0012]
gi|323478891|gb|ADX78330.1| DNA repair protein RadC family protein [Enterococcus faecalis 62]
gi|329573420|gb|EGG55030.1| DNA repair protein RadC [Enterococcus faecalis TX1467]
Length = 232
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 17 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 76
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 77 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 136
>gi|282883116|ref|ZP_06291715.1| DNA repair protein RadC-like protein [Peptoniphilus lacrimalis
315-B]
gi|281296928|gb|EFA89425.1| DNA repair protein RadC-like protein [Peptoniphilus lacrimalis
315-B]
Length = 236
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 6/128 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG------VFGA 76
R +++ L G +AL E+L LI+ + + + +L+ + A
Sbjct: 15 ERPQEKLLHLGPSALTNAELLALIIRTGTKELTSVELCEKILRELKRENNSSLLSGLRIA 74
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L I +G+ A + ++R+ ++ KK +T + V
Sbjct: 75 SMDKLTAIKGVGQAKAAMIMAALTLAERLNSSSIYDKKKITSPEDAAKYVMASMRDLETE 134
Query: 137 NFAYCFSI 144
F
Sbjct: 135 VFRIIILN 142
>gi|313633115|gb|EFS00011.1| putative DNA repair protein [Listeria seeligeri FSL N1-067]
gi|313637692|gb|EFS03068.1| putative DNA repair protein [Listeria seeligeri FSL S4-171]
Length = 224
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R++ G +L+ E++ +I+ + +IA ++ +F + + A L LQ
Sbjct: 10 EKPREKLQNYGIESLSTSELVAIIIETGTKNESVLTIANRIIMKFKHVAEMQYASLEELQ 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
IN IG A ++ +RI + + + V +F F
Sbjct: 70 LINGIGLAKASKIMAAVELGKRISLVTEREEIVIRCPDDAVKLVMPELAFLFQEHFHCIF 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|198274552|ref|ZP_03207084.1| hypothetical protein BACPLE_00704 [Bacteroides plebeius DSM 17135]
gi|198272606|gb|EDY96875.1| hypothetical protein BACPLE_00704 [Bacteroides plebeius DSM 17135]
Length = 229
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAP 77
+R R++ + G AL+ E+L +++ + + + +L +
Sbjct: 10 WAEEDRPREKMMLHGPAALSNAELLAILIGSGNTEETAVELMRKVLDDCHNRLSELGKYT 69
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L IG A+ + S +R + S +K +T Q
Sbjct: 70 VDDLCRYKGIGPAKAVTILAASELGKRRREEEPSERKKITSSQDVYAFFHPLMCDLPVEE 129
Query: 138 FAYCFSI 144
Sbjct: 130 CWVMLLN 136
>gi|307278557|ref|ZP_07559629.1| DNA repair protein RadC [Enterococcus faecalis TX0860]
gi|306504794|gb|EFM73992.1| DNA repair protein RadC [Enterococcus faecalis TX0860]
Length = 240
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L +
Sbjct: 25 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELIAV 84
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 85 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 144
>gi|312865347|ref|ZP_07725575.1| DNA repair protein RadC [Streptococcus downei F0415]
gi|311099458|gb|EFQ57674.1| DNA repair protein RadC [Streptococcus downei F0415]
Length = 231
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 46/122 (37%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R + G L+ E+L ++L + ++A +L+ ++L L LQ
Sbjct: 11 MRPRERLVTLGPENLSNQELLAILLRTGTRQHHVLTLANNILEEVSSLADFRSYSLEELQ 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I IG+ ++E+K ++R+ + + + K + +
Sbjct: 71 AIPGIGQVKSIEIKAALEFAKRVNQTLPEKSDRIISSDRLAKKMMAELRDKRQEHLIALY 130
Query: 143 SI 144
Sbjct: 131 LD 132
>gi|223940790|ref|ZP_03632624.1| DNA repair protein RadC [bacterium Ellin514]
gi|223890547|gb|EEF57074.1| DNA repair protein RadC [bacterium Ellin514]
Length = 244
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R +Q G + L E++ ++L + ++A+ LL RF TL + A L L
Sbjct: 23 ERPRERLVQHGADVLKNSELIAILLRTGLKGVSAITVAEQLLHRFGTLDTLSRATLADLC 82
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG+ A+ LK ++R+ L + + NF
Sbjct: 83 KVKGIGRDKAIALKSAFTLARRMAAELKPEGTVLDNPEAIADLLREENRSYEVENFQVVL 142
Query: 143 SI 144
Sbjct: 143 LN 144
>gi|311748301|ref|ZP_07722086.1| DNA repair protein RadC [Algoriphagus sp. PR1]
gi|126576798|gb|EAZ81046.1| DNA repair protein RadC [Algoriphagus sp. PR1]
Length = 231
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 50/130 (38%), Gaps = 1/130 (0%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGV 73
+ + +R R++ L KG+++L+ E++ +++ +++ +L L +
Sbjct: 8 KISQLAEADRPREKLLLKGKSSLSDAELIAILIGSGSTTLSAVDLSRHILSSVNHDLFSL 67
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
+ L++ IG+ A+ + +R + K +T Q ++ +
Sbjct: 68 ARLSVQDLKKFKGIGEAKAISIIAALEIGRRRKDSEPVQKPKITSSQDVYNLMKAELADE 127
Query: 134 NANNFAYCFS 143
+ F
Sbjct: 128 SVEYFYLVLL 137
>gi|255970845|ref|ZP_05421431.1| DNA repair protein RadC [Enterococcus faecalis T1]
gi|256761220|ref|ZP_05501800.1| DNA repair protein RadC [Enterococcus faecalis T3]
gi|255961863|gb|EET94339.1| DNA repair protein RadC [Enterococcus faecalis T1]
gi|256682471|gb|EEU22166.1| DNA repair protein RadC [Enterococcus faecalis T3]
Length = 227
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 12 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 72 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 131
>gi|16800652|ref|NP_470920.1| DNA repair protein RadC [Listeria innocua Clip11262]
gi|25009035|sp|Q92BG5|Y1584_LISIN RecName: Full=UPF0758 protein lin1584
gi|16414071|emb|CAC96815.1| lin1584 [Listeria innocua Clip11262]
gi|313618770|gb|EFR90672.1| putative DNA repair protein [Listeria innocua FSL S4-378]
Length = 224
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R++ G AL+ E++ LI+ + +IA ++ +F + + A + Q
Sbjct: 10 EKPREKLQNYGIEALSTSELVALIIETGTKTESVLTIANRIMMKFKHIAEMQYASIEEFQ 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+N IG A ++ +RI + + + + V +F F
Sbjct: 70 LVNGIGIAKASKIMAAVELGKRISLVTEQKEIVIRCPEDAVKLVMPELAFLFQEHFHCIF 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|254974678|ref|ZP_05271150.1| DNA repair protein [Clostridium difficile QCD-66c26]
gi|255092066|ref|ZP_05321544.1| DNA repair protein [Clostridium difficile CIP 107932]
gi|255100158|ref|ZP_05329135.1| DNA repair protein [Clostridium difficile QCD-63q42]
gi|255306048|ref|ZP_05350220.1| DNA repair protein [Clostridium difficile ATCC 43255]
gi|255313803|ref|ZP_05355386.1| DNA repair protein [Clostridium difficile QCD-76w55]
gi|255516484|ref|ZP_05384160.1| DNA repair protein [Clostridium difficile QCD-97b34]
gi|255649584|ref|ZP_05396486.1| DNA repair protein [Clostridium difficile QCD-37x79]
gi|260682749|ref|YP_003214034.1| DNA repair protein [Clostridium difficile CD196]
gi|260686347|ref|YP_003217480.1| DNA repair protein [Clostridium difficile R20291]
gi|306519710|ref|ZP_07406057.1| DNA repair protein [Clostridium difficile QCD-32g58]
gi|260208912|emb|CBA61903.1| DNA repair protein [Clostridium difficile CD196]
gi|260212363|emb|CBE03177.1| DNA repair protein [Clostridium difficile R20291]
Length = 219
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 2/123 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
R R++ L KG +L+ E+L ++L K+ +A ++ R + + + L
Sbjct: 5 ERPREKMLAKGVKSLSNAELLAILLRTGNKNKNAIELANYIINRDIQGIRHLEDMTIEEL 64
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I+ IG + ++K R+ + F
Sbjct: 65 CNIDGIGLSKSTQIKAALELGSRVASFKPIKY-KIRNPWDIQRYYMDSLRYLKKEVFKAV 123
Query: 142 FSI 144
Sbjct: 124 LLN 126
>gi|229823990|ref|ZP_04450059.1| hypothetical protein GCWU000282_01294 [Catonella morbi ATCC 51271]
gi|229786344|gb|EEP22458.1| hypothetical protein GCWU000282_01294 [Catonella morbi ATCC 51271]
Length = 231
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 43/120 (35%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + G AL+ E+L ++L ++ A+L F L + A L + I
Sbjct: 17 PRERLVNFGAKALSNQELLAILLGTGSQDLRVLDLSLAVLTHFRDLSELKSASLDQFEAI 76
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A++L+ QRI + LT + + + F
Sbjct: 77 KGIGPVKAIQLQACIELGQRIAQKRPPKLGTLTSTKAAGQWLHDALCDMQQEHLMALFLN 136
>gi|21673446|ref|NP_661511.1| DNA repair protein RadC [Chlorobium tepidum TLS]
gi|30580476|sp|Q8KES1|Y611_CHLTE RecName: Full=UPF0758 protein CT0611
gi|21646548|gb|AAM71853.1| DNA repair protein RadC [Chlorobium tepidum TLS]
Length = 222
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 2/129 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ I NR R+RFL+ G+ +L+ E+L LIL + L+ L +
Sbjct: 2 RIHDIDPDNRPRERFLRSGKESLSPAELLALILRSGTAGLNIIDTCNKLISEHG-LERLA 60
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
+ LQ+ IG+ A+++ + +R+ A K + ++ P +
Sbjct: 61 DLSIQELQKTPGIGEAKAMQIAAIFELQRRLHFARNMNLKV-KGARDVFEYMKGRIPDET 119
Query: 135 ANNFAYCFS 143
+ F
Sbjct: 120 KEHLFVLFL 128
>gi|29377390|ref|NP_816544.1| DNA repair protein RadC [Enterococcus faecalis V583]
gi|54036236|sp|Q82ZX1|Y2926_ENTFA RecName: Full=UPF0758 protein EF_2926
gi|29344857|gb|AAO82614.1| DNA repair protein RadC [Enterococcus faecalis V583]
Length = 232
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 17 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 76
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 77 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 136
>gi|322391926|ref|ZP_08065390.1| DNA repair protein RadC [Streptococcus peroris ATCC 700780]
gi|321145152|gb|EFX40549.1| DNA repair protein RadC [Streptococcus peroris ATCC 700780]
Length = 226
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G AL+ E+L ++L + + IA+ +L + L + L LQ +
Sbjct: 13 PRERLVKEGVEALSNQELLAILLRTGTKQANVFEIAQKVLNQLTCLTDLKKMSLQELQTL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI K + + Q ++ K + +
Sbjct: 73 SGIGRVKAIELQAMIELGCRIHKRETVEMESILSSQRLAKKMQDELGDKKQEHLVALYLN 132
>gi|189501561|ref|YP_001957278.1| DNA repair protein RadC [Candidatus Amoebophilus asiaticus 5a2]
gi|189497002|gb|ACE05549.1| DNA repair protein RadC [Candidatus Amoebophilus asiaticus 5a2]
Length = 243
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 6/140 (4%)
Query: 7 SKAPSKDSHLDY-----IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
S PS+++ Y +R R++ +QKG + L+ E++ ++L +A+
Sbjct: 6 SNLPSQNTEASYLKIQDWAKEDRPREKLIQKGPSVLSEAELIGILLGSGTKNLSAVGLAQ 65
Query: 62 ALLKRFA-TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
A+LK L + + LQ+ IG+ A+ + +R K +T
Sbjct: 66 AILKHHNYDLNELAKRSVKELQKFKGIGEAKAVSIVSAMELGRRRKAKEKLQKPRITSSL 125
Query: 121 PCLISVERHYPMKNANNFAY 140
+ K F
Sbjct: 126 EAYELMRMELSDKVIEEFWI 145
>gi|73748411|ref|YP_307650.1| RadC family DNA repair protein [Dehalococcoides sp. CBDB1]
gi|73660127|emb|CAI82734.1| DNA repair protein, RadC family [Dehalococcoides sp. CBDB1]
Length = 219
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 44/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R G AL+ E+L +IL R + + A+ L+ F G+ A + L
Sbjct: 5 ERPRERLQSLGAGALSSVELLAVILGRGVAGEPVLQSAQRLIAHFGGPSGIACASVEELS 64
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG A +LK ++R + + + + + F
Sbjct: 65 KLKGIGLAKACQLKAAFELAKRAGGIKGEYQPCIKTPEDVFQIIYPLVCDEKKEYFFCLM 124
Query: 143 SI 144
Sbjct: 125 LD 126
>gi|148360058|ref|YP_001251265.1| DNA repair protein RadC [Legionella pneumophila str. Corby]
gi|296108121|ref|YP_003619822.1| DNA repair protein RadC [Legionella pneumophila 2300/99 Alcoy]
gi|229485555|sp|A5IEW9|Y1989_LEGPC RecName: Full=UPF0758 protein LPC_1989
gi|148281831|gb|ABQ55919.1| DNA repair protein RadC [Legionella pneumophila str. Corby]
gi|295650023|gb|ADG25870.1| DNA repair protein RadC [Legionella pneumophila 2300/99 Alcoy]
Length = 227
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
LR++ L G ++L+ E+L + + +K +A L K L + A L + I
Sbjct: 12 LREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSI 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +G+ +L+ R + + L+ Q +++ FA F
Sbjct: 72 HGLGEVRYAQLQAAKEICHRSDFIDLQKEIQLSNTQQTYAFLKKRLRDYKNETFAALFLD 131
>gi|15903040|ref|NP_358590.1| DNA repair protein RadC [Streptococcus pneumoniae R6]
gi|15458611|gb|AAK99800.1| DNA repair protein [Streptococcus pneumoniae R6]
Length = 231
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++G AL+ E+L ++L + IA+ +L ++L + L LQ +
Sbjct: 18 PRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSL 77
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI K + + Q +++ K + +
Sbjct: 78 SGIGRVKAIELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 137
>gi|303236161|ref|ZP_07322762.1| putative DNA repair protein RadC [Prevotella disiens FB035-09AN]
gi|302483667|gb|EFL46661.1| putative DNA repair protein RadC [Prevotella disiens FB035-09AN]
Length = 229
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAP 77
+R R++ ++ G ++L+ E+L +++ PR+ + K ++ L +
Sbjct: 10 WAEEDRPREKLMRLGADSLSNAELLAILIGSGSPRESAVELMKRVMNDCQNNLNTLGKMS 69
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ LQ+ N IG A+ + +R + ++ L + K+
Sbjct: 70 IDELQQYNGIGAAKAVTILAACELGKRRQAEAAADRQDLGSASAIYNFMHTKLQDKDMEE 129
Query: 138 FAYCFSI 144
Sbjct: 130 AWVLLMN 136
>gi|182684160|ref|YP_001835907.1| DNA repair protein RadC [Streptococcus pneumoniae CGSP14]
gi|182629494|gb|ACB90442.1| DNA repair protein RadC [Streptococcus pneumoniae CGSP14]
Length = 231
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++G AL+ E+L ++L + IA+ +L ++L + L LQ +
Sbjct: 18 PRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSL 77
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI K + + Q +++ K + +
Sbjct: 78 SGIGRVKAIELQAMIELGHRIHKHETLEIESILSSQKLAKKMQQELGDKKQEHLVALYLN 137
>gi|227872346|ref|ZP_03990699.1| possible DNA repair protein RadC [Oribacterium sinus F0268]
gi|227841810|gb|EEJ52087.1| possible DNA repair protein RadC [Oribacterium sinus F0268]
Length = 229
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR---FATLGGVFGAPLHLL 81
R++ ++ G +AL E+L +IL + ++A+ +L + L G+ L L
Sbjct: 13 PREKAIRLGVSALTDEELLAVILRTGTREESVLALAEKVLHLSPVYDGLVGLMQYSLEDL 72
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIK-KFLTPGQPCLISVERHYPMKNANNFAY 140
Q I +G+ ALEL+++ ++RI + + L + +
Sbjct: 73 QAIKGVGETKALELQVIGELAKRIWNRKIREEVQSFRSPGSVLQYFKEELRHLSYEEVHV 132
Query: 141 CFSI 144
F
Sbjct: 133 LFLD 136
>gi|256819754|ref|YP_003141033.1| DNA repair protein RadC [Capnocytophaga ochracea DSM 7271]
gi|256581337|gb|ACU92472.1| DNA repair protein RadC [Capnocytophaga ochracea DSM 7271]
Length = 225
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 46/123 (37%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGVFGAPLHLL 81
++ R++ + +G+ AL+ E+L ++L + +++ +L +L + L L
Sbjct: 10 DKPREKMISQGKTALSNAELLAILLGSGSADESAVELSRRILASVNNSLTTLGKQSLQQL 69
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
Q IG+ A+ + + +R + + + ++ F
Sbjct: 70 QAFKGIGQAKAITILAATEMGRRRAAETPEPQPKIEVAHNVFVLMQPLIGELPHEEFWVL 129
Query: 142 FSI 144
+
Sbjct: 130 YLN 132
>gi|293382175|ref|ZP_06628118.1| DNA repair protein RadC [Enterococcus faecalis R712]
gi|293388514|ref|ZP_06633018.1| DNA repair protein RadC [Enterococcus faecalis S613]
gi|312905730|ref|ZP_07764752.1| DNA repair protein RadC [Enterococcus faecalis DAPTO 512]
gi|312909075|ref|ZP_07767935.1| DNA repair protein RadC [Enterococcus faecalis DAPTO 516]
gi|291080458|gb|EFE17822.1| DNA repair protein RadC [Enterococcus faecalis R712]
gi|291082118|gb|EFE19081.1| DNA repair protein RadC [Enterococcus faecalis S613]
gi|310628209|gb|EFQ11492.1| DNA repair protein RadC [Enterococcus faecalis DAPTO 512]
gi|311290637|gb|EFQ69193.1| DNA repair protein RadC [Enterococcus faecalis DAPTO 516]
Length = 240
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 25 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 84
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 85 RGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 144
>gi|254463516|ref|ZP_05076932.1| DNA repair protein RadC [Rhodobacterales bacterium HTCC2083]
gi|206680105|gb|EDZ44592.1| DNA repair protein RadC [Rhodobacteraceae bacterium HTCC2083]
Length = 253
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Query: 5 RMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
+M + HH LR+RF G L+ E+LEL+L PRKDT+ IA+ +L
Sbjct: 23 KMGRDRLGLYDSKLRDHHVALRERFQDHGAEHLSDAEMLELLLLHASPRKDTRPIAQKIL 82
Query: 65 KRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
F + A L+ + + +LKLV AS+R+ KA + + ++ L
Sbjct: 83 AEFGDIASTLAADTARLEALIGVSATQ--DLKLVFGASKRMAKARIAHRPLISSWDAVLT 140
Query: 125 SVERHYPMKNANNFAYCFSI 144
K F F
Sbjct: 141 YCRTSLAHKETEEFHVLFLN 160
>gi|291278966|ref|YP_003495801.1| DNA repair protein RadC [Deferribacter desulfuricans SSM1]
gi|290753668|dbj|BAI80045.1| DNA repair protein RadC [Deferribacter desulfuricans SSM1]
Length = 232
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 6/134 (4%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K Y+GH RL++RF+ ++LA YEI+EL+L ++ KD K AK +L +
Sbjct: 11 KKEKPHYLGHRKRLKERFVNN-PSSLADYEIVELLLGYVVRGKDVKPQAKNILAHVGGIQ 69
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHY 130
+F I +G L ++ +R +N + L ++
Sbjct: 70 NIFKISDD----IEGVGSETVLFFNIIKDLFRRCEYSNLRENETILNSPTAVFKFLKFEV 125
Query: 131 PMKNANNFAYCFSI 144
+ F
Sbjct: 126 GFDDVEKLIAVFLD 139
>gi|270292791|ref|ZP_06199002.1| DNA repair protein RadC [Streptococcus sp. M143]
gi|270278770|gb|EFA24616.1| DNA repair protein RadC [Streptococcus sp. M143]
Length = 231
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G AL+ E+L ++L + + IA+ +L +L + L LQ +
Sbjct: 18 PRERLVKEGVEALSNQELLAILLRTGTRQANVFEIAQKVLNSLNSLTDLKKMTLQELQSL 77
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ V RI K + + Q +++ K + +
Sbjct: 78 SGIGRIKAIELQAVIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 137
>gi|255655143|ref|ZP_05400552.1| DNA repair protein [Clostridium difficile QCD-23m63]
Length = 219
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 2/123 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
R R++ L KG +L+ E+L ++L K+ +A ++ R + + + L
Sbjct: 5 ERPREKMLAKGVKSLSNAELLAILLRTGDKNKNAIELANYIINRDIQGIRHLEDMTIEEL 64
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I+ IG A ++K R+ + F
Sbjct: 65 CNIDGIGLSKATQIKAALELGSRVASFKPIKY-KIRNPWDIQRYYMDSLRYLKKEVFKAV 123
Query: 142 FSI 144
Sbjct: 124 LLN 126
>gi|160888055|ref|ZP_02069058.1| hypothetical protein BACUNI_00463 [Bacteroides uniformis ATCC 8492]
gi|270295580|ref|ZP_06201781.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317478564|ref|ZP_07937721.1| DNA repair protein RadC [Bacteroides sp. 4_1_36]
gi|156862554|gb|EDO55985.1| hypothetical protein BACUNI_00463 [Bacteroides uniformis ATCC 8492]
gi|270274827|gb|EFA20688.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316905205|gb|EFV27002.1| DNA repair protein RadC [Bacteroides sp. 4_1_36]
Length = 228
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 39/124 (31%), Gaps = 1/124 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAPLHLL 81
+R R++ +QKG AL+ E+L +++ + ++ + +L L + +
Sbjct: 13 DRPREKMMQKGAEALSDAELLAILIGSGNTEETAVTLMQRILAACGNDLNRLGKWEVRDF 72
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G ++ + +R S + + F
Sbjct: 73 SRFKGMGPAKSITVMASLELGKRRKLQERSGRTAIRSSADIYELFHPLLCDLATEEFWVL 132
Query: 142 FSIN 145
+
Sbjct: 133 LMNH 136
>gi|18311126|ref|NP_563060.1| DNA repair protein RadC [Clostridium perfringens str. 13]
gi|168212819|ref|ZP_02638444.1| DNA repair protein, RadC family [Clostridium perfringens CPE str.
F4969]
gi|168215771|ref|ZP_02641396.1| DNA repair protein, RadC family [Clostridium perfringens NCTC 8239]
gi|182623959|ref|ZP_02951747.1| DNA repair protein, RadC family [Clostridium perfringens D str.
JGS1721]
gi|25009030|sp|Q8XIH5|Y2144_CLOPE RecName: Full=UPF0758 protein CPE2144
gi|18145809|dbj|BAB81850.1| DNA repair protein [Clostridium perfringens str. 13]
gi|170715570|gb|EDT27752.1| DNA repair protein, RadC family [Clostridium perfringens CPE str.
F4969]
gi|177910852|gb|EDT73206.1| DNA repair protein, RadC family [Clostridium perfringens D str.
JGS1721]
gi|182382393|gb|EDT79872.1| DNA repair protein, RadC family [Clostridium perfringens NCTC 8239]
Length = 227
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 4/124 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L G L+ E+L +IL + ++ ++ L G+F A L
Sbjct: 14 ERPREKLLFYGAQFLSNEELLAIILRTGNKDSNVVELSYRIIHSVGGLNGLFKASAKELM 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
E+ + + A ++ + +R + + ++ V M
Sbjct: 74 EVKGVKEAKATQILAMCELYKRFKVSELTQV-KISKPSDVAKLVLDELRMLRQE---VLI 129
Query: 143 SINI 146
IN+
Sbjct: 130 LINL 133
>gi|110800059|ref|YP_696822.1| DNA repair protein RadC [Clostridium perfringens ATCC 13124]
gi|168208846|ref|ZP_02634471.1| DNA repair protein, RadC family [Clostridium perfringens B str.
ATCC 3626]
gi|123148570|sp|Q0TNG8|Y2399_CLOP1 RecName: Full=UPF0758 protein CPF_2399
gi|110674706|gb|ABG83693.1| DNA repair protein, RadC family [Clostridium perfringens ATCC
13124]
gi|170713218|gb|EDT25400.1| DNA repair protein, RadC family [Clostridium perfringens B str.
ATCC 3626]
Length = 227
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 4/124 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L G L+ E+L +IL + ++ ++ L G+F A L
Sbjct: 14 ERPREKLLFYGAQFLSNEELLAIILRTGNKDSNVVELSYRIIHSVGGLNGLFKASAKELM 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
E+ + + A ++ + +R + + ++ V M
Sbjct: 74 EVKGVKEAKATQILAMCELYKRFKVSELAQV-KISKPSDVAKLVLDELRMLRQE---VLI 129
Query: 143 SINI 146
IN+
Sbjct: 130 LINL 133
>gi|323343922|ref|ZP_08084149.1| DNA repair protein RadC [Prevotella oralis ATCC 33269]
gi|323095741|gb|EFZ38315.1| DNA repair protein RadC [Prevotella oralis ATCC 33269]
Length = 242
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 37/127 (29%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAP 77
+R R++ G L E+L +++ + + K +L L +
Sbjct: 23 WAEEDRPREKLEHIGAANLTNAELLAILIGSGSTNESAVDLMKRILNDCKNNLNTLGKMT 82
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ LQ +G A+ + +R + ++ L + + +
Sbjct: 83 VAELQRYKGMGPAKAITVLAACELGKRRAREKAEERQDLGSAKAIYDYMHPFMQDLDVEE 142
Query: 138 FAYCFSI 144
Sbjct: 143 SWILLMN 149
>gi|256962798|ref|ZP_05566969.1| DNA repair protein RadC [Enterococcus faecalis HIP11704]
gi|256953294|gb|EEU69926.1| DNA repair protein RadC [Enterococcus faecalis HIP11704]
Length = 196
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L +
Sbjct: 30 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAV 89
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 90 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 149
>gi|293365525|ref|ZP_06612234.1| DNA repair protein RadC [Streptococcus oralis ATCC 35037]
gi|307703484|ref|ZP_07640426.1| DNA repair protein radC [Streptococcus oralis ATCC 35037]
gi|291315893|gb|EFE56337.1| DNA repair protein RadC [Streptococcus oralis ATCC 35037]
gi|307622891|gb|EFO01886.1| DNA repair protein radC [Streptococcus oralis ATCC 35037]
Length = 226
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G AL+ E+L ++L + + IA+ +L +L + L LQ +
Sbjct: 13 PRERLVKEGVEALSNQELLAILLRTGTRQANVFEIAQKVLNSLTSLTDLKKMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ V RI K + + Q +++ K + +
Sbjct: 73 SGIGRIKAIELQAVIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 132
>gi|225175173|ref|ZP_03729169.1| DNA repair protein RadC [Dethiobacter alkaliphilus AHT 1]
gi|225169349|gb|EEG78147.1| DNA repair protein RadC [Dethiobacter alkaliphilus AHT 1]
Length = 232
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 40/122 (32%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L G +L+ +++ +++ + +A+ +L L + +
Sbjct: 15 ERPRERLLANGTPSLSDADLIAILIRSGTREETAVQLAERVLLNVGGLQELPRCGADDIL 74
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G A+ + + ++R+ ++ V +F
Sbjct: 75 SIKGLGPAKAVTILAAAELAKRLSSRLRHESVTVSSPGDAAGLVMEEMRHNLREHFRAIM 134
Query: 143 SI 144
Sbjct: 135 LD 136
>gi|255974420|ref|ZP_05425006.1| DNA repair protein RadC [Enterococcus faecalis T2]
gi|255967292|gb|EET97914.1| DNA repair protein RadC [Enterococcus faecalis T2]
Length = 227
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L +
Sbjct: 12 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELIAV 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 72 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 131
>gi|322387839|ref|ZP_08061447.1| DNA repair protein RadC [Streptococcus infantis ATCC 700779]
gi|321141341|gb|EFX36838.1| DNA repair protein RadC [Streptococcus infantis ATCC 700779]
Length = 226
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G AL+ E+L ++L + + IA+ +L + L + L LQ +
Sbjct: 13 PRERLVKEGVEALSNQELLAILLRTGTKQANVFEIAQKVLNQLTCLTDLKRMSLQELQTL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ V RI K + + + ++ K + +
Sbjct: 73 SGIGRVKAIELQAVIELGYRIHKKETVEMESILSSRKLAKKMQSEIGDKKQEHLVALYLN 132
>gi|315225157|ref|ZP_07866974.1| DNA repair protein RadC [Capnocytophaga ochracea F0287]
gi|314944840|gb|EFS96872.1| DNA repair protein RadC [Capnocytophaga ochracea F0287]
Length = 225
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 46/123 (37%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGVFGAPLHLL 81
++LR++ + +G+ AL+ E+L ++L + +++ +L +L + L L
Sbjct: 10 DKLREKMIAQGKTALSNAELLAILLGSGSADESAVELSRRILASVNNSLTTLGKQSLQQL 69
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
Q IG+ A+ + + +R + + ++ F
Sbjct: 70 QAFKGIGQAKAITILAATEMGRRRAAETPEPQPKIEVAHNVFTLMQPLIGELPHEEFWVL 129
Query: 142 FSI 144
+
Sbjct: 130 YLN 132
>gi|167630773|ref|YP_001681272.1| DNA repair protein radc [Heliobacterium modesticaldum Ice1]
gi|167593513|gb|ABZ85261.1| DNA repair protein radc [Heliobacterium modesticaldum Ice1]
Length = 223
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 1/128 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ R R+R L G AL E+L ++L R+ +A +L R L + A
Sbjct: 4 KDLPEDLRPRERLLSAGPQALTNAELLAILLRTGTTRETAIDMAHRIL-RQGGLRFLAEA 62
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L + +G A ++K +RI + + + V +
Sbjct: 63 TADELSALRGLGAAKAAQVKAAVELGRRIASTAPESRPVIRSPEDASRLVMEDMRFLDRE 122
Query: 137 NFAYCFSI 144
F
Sbjct: 123 VFRAIALN 130
>gi|291550398|emb|CBL26660.1| DNA replication and repair protein RadC [Ruminococcus torques
L2-14]
Length = 240
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFG---APLH 79
+R ++ Q G L E+L ++L +++ +A+ +L G+ +
Sbjct: 16 DRPYEKCEQYGAEHLTDVELLAVLLRTGTKGENSLRLAQKILHPPFGSEGLLSIPQWSME 75
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L +I IGK ++++ ++ ++R+ KA S+ + K
Sbjct: 76 QLLKIKGIGKVKSIQILCLAELARRMAKAEASLGLDFSSPDSIARYYMEDLRHKKREVMK 135
Query: 140 YCFSI 144
Sbjct: 136 LLLLN 140
>gi|258544459|ref|ZP_05704693.1| DNA repair protein RadC [Cardiobacterium hominis ATCC 15826]
gi|258520300|gb|EEV89159.1| DNA repair protein RadC [Cardiobacterium hominis ATCC 15826]
Length = 224
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L G ALA YE+L ++L + ++ LL+ L G+F + LQ +
Sbjct: 11 PRERMLHNGAQALADYELLAILLRTGSKGSNVLEFSRELLRGRGGLVGLFNSRAADLQAV 70
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFS 143
+GK E+ V+ ++R ++ + + + + F F
Sbjct: 71 RGLGKAKTAEILAVTELARRFMREEMRQPSWSFKTAADVRDYLLMQFKGQALEAFGVLFL 130
Query: 144 I 144
Sbjct: 131 N 131
>gi|168205621|ref|ZP_02631626.1| DNA repair protein, RadC family [Clostridium perfringens E str.
JGS1987]
gi|169344220|ref|ZP_02865202.1| DNA repair protein, RadC family [Clostridium perfringens C str.
JGS1495]
gi|169297679|gb|EDS79779.1| DNA repair protein, RadC family [Clostridium perfringens C str.
JGS1495]
gi|170662943|gb|EDT15626.1| DNA repair protein, RadC family [Clostridium perfringens E str.
JGS1987]
Length = 227
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 4/124 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L G L+ E+L +IL + ++ ++ L G+F A L
Sbjct: 14 ERPREKLLFYGAQFLSNEELLAIILRTGNKDLNVVELSYRIIHSVGGLNGLFKASAKELM 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
E+ + + A ++ + +R + + ++ V M
Sbjct: 74 EVKGVKEAKATQILAMCELYKRFKVSELTQV-KISKPSDVAKLVLDELRMLRQE---VLI 129
Query: 143 SINI 146
IN+
Sbjct: 130 LINL 133
>gi|260494432|ref|ZP_05814562.1| DNA repair protein radC [Fusobacterium sp. 3_1_33]
gi|260197594|gb|EEW95111.1| DNA repair protein radC [Fusobacterium sp. 3_1_33]
Length = 232
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
S D GH R+R++F G + A YEILEL+L IPRKDTKSIAK LL +F TL V
Sbjct: 2 SEKDNQGHRGRIREKFFNNGIDGFAEYEILELLLTYCIPRKDTKSIAKELLNKFKTLDNV 61
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANW-------SIKKFLTPGQPCLISV 126
F A L I+ +GK LKL+ I K ++ L +
Sbjct: 62 FKADFDKLFAIDGLGKNSIAFLKLIGELPSIIYKDELKNKKLINKETLKISNKDILLKYL 121
Query: 127 ERHYPMKNANNFAYCFS 143
+ F +
Sbjct: 122 RNKIGYEEIEKFYVIYL 138
>gi|256960307|ref|ZP_05564478.1| DNA repair protein RadC [Enterococcus faecalis Merz96]
gi|257083375|ref|ZP_05577736.1| DNA repair protein RadC [Enterococcus faecalis Fly1]
gi|256950803|gb|EEU67435.1| DNA repair protein RadC [Enterococcus faecalis Merz96]
gi|256991405|gb|EEU78707.1| DNA repair protein RadC [Enterococcus faecalis Fly1]
Length = 232
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 17 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 76
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ +T Q + + + +
Sbjct: 77 RGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 136
>gi|303241148|ref|ZP_07327656.1| DNA repair protein RadC [Acetivibrio cellulolyticus CD2]
gi|302591275|gb|EFL61015.1| DNA repair protein RadC [Acetivibrio cellulolyticus CD2]
Length = 226
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 60/127 (47%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH RL+ RFL+ G ++ +++LEL+LF IPRKDT +A LL ++ +L GVF A
Sbjct: 2 HEGHRKRLKMRFLKDGLDSFEPHQVLELLLFYSIPRKDTNELAHELLSKYGSLSGVFEAD 61
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L +I+ +G+ A L L+ S+R W K L + +
Sbjct: 62 PKDLSQISGVGESTAFLLSLIPQLSRRYFNDKWGEKPELNSSTKAGQYAVSLFAGRTYEA 121
Query: 138 FAYCFSI 144
F
Sbjct: 122 FYIICLD 128
>gi|253702454|ref|YP_003023643.1| DNA repair protein RadC [Geobacter sp. M21]
gi|251777304|gb|ACT19885.1| DNA repair protein RadC [Geobacter sp. M21]
Length = 231
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 5/131 (3%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIP--RKDTKSIAKALLKRFATLGGVFGA 76
R R++ +Q G + L+ E+L LIL + + + L+ +F +L + A
Sbjct: 8 WPEKERPREKLMQHGASFLSEAELLALILKSGDAASGRSALDLGRELMLQFGSLSLLADA 67
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRIL---KANWSIKKFLTPGQPCLISVERHYPMK 133
+Q++ IG A + ++RI + T + + +
Sbjct: 68 SCSEIQKVKGIGPAKATCILAALDLARRIKERDRRPIESLTRFTSASQVFEHLNPEFRDR 127
Query: 134 NANNFAYCFSI 144
+ F
Sbjct: 128 HKEQFMALLLD 138
>gi|322421682|ref|YP_004200905.1| DNA repair protein RadC [Geobacter sp. M18]
gi|320128069|gb|ADW15629.1| DNA repair protein RadC [Geobacter sp. M18]
Length = 231
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 5/131 (3%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIP--RKDTKSIAKALLKRFATLGGVFGA 76
R R++ + KG +AL+ E+L LIL + + + LL +F +L + A
Sbjct: 8 WPEAERPREKLMHKGVSALSEAELLALILGSGDAASGRSALDLGRELLLQFKSLRVLADA 67
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKAN---WSIKKFLTPGQPCLISVERHYPMK 133
+Q++ IG A + S+RI + + T + + +
Sbjct: 68 SCREIQQVKGIGPAKATCILAALALSRRIREKEGRPIESFERFTSASQVFEHLNHEFRDR 127
Query: 134 NANNFAYCFSI 144
+ F
Sbjct: 128 HTEQFMVLLLD 138
>gi|260587686|ref|ZP_05853599.1| DNA repair protein RadC [Blautia hansenii DSM 20583]
gi|331084025|ref|ZP_08333132.1| hypothetical protein HMPREF0992_02056 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541951|gb|EEX22520.1| DNA repair protein RadC [Blautia hansenii DSM 20583]
gi|330402387|gb|EGG81957.1| hypothetical protein HMPREF0992_02056 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 231
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 3/128 (2%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF---GA 76
+R ++ L+ G L E+L ++L + +A+ +LK G+
Sbjct: 11 PEEDRPYEKCLRMGAECLTDSELLAVLLRTGTKGSPSVEMAEEVLKLSKDKEGLLGLHQL 70
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L LQ + IGK A+++K + S+RI A +
Sbjct: 71 SLAQLQAVKGIGKVKAIQIKCIGELSKRIATATAKKGLSFRHPASIADYYMEQLRHEEQE 130
Query: 137 NFAYCFSI 144
Sbjct: 131 LLICMMLD 138
>gi|213425229|ref|ZP_03357979.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
Length = 198
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 43/104 (41%)
Query: 41 EILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSV 100
E+L L L P KD ++AK +L+ F +L G+ A + +N IG +LK ++
Sbjct: 2 ELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSADFAQFRGVNGIGLAKFAQLKGIAE 61
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++R + + L + ++ + F F
Sbjct: 62 LARRYYSVRMNEESALLSPEMTREFLQSQLTGEEREIFLVIFLD 105
>gi|251782289|ref|YP_002996591.1| DNA repair protein RadC [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390918|dbj|BAH81377.1| DNA repair protein RadC [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323127188|gb|ADX24485.1| DNA repair protein RadC [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 226
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G AL+ E+L ++L K ++ LL +L L LQ +
Sbjct: 13 PRERLMRMGAEALSNQELLAILLRTGNKEKHVLELSSYLLSHLESLADFKKLSLQELQTL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IGK A+E+K + + RI ++ + + + K + +
Sbjct: 73 AGIGKVKAIEIKAMIELAARIQATEQTLSERILSSVQIAEKMMAVLGDKKQEHLVVLYLD 132
>gi|294054448|ref|YP_003548106.1| DNA repair protein RadC [Coraliomargarita akajimensis DSM 45221]
gi|293613781|gb|ADE53936.1| DNA repair protein RadC [Coraliomargarita akajimensis DSM 45221]
Length = 239
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 2/124 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R ++R ++G AL+ E+L LIL D S+ LL + +L +
Sbjct: 16 ERPQERLEKQGAAALSDRELLALILRSGQRGIDIVSLTGNLLDQAGSLPQLMHWTREDYL 75
Query: 83 EINRIGKRVALELKLVSVASQRILKA--NWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
++ IG A +L V ++R+++A I + L + + + F
Sbjct: 76 RLHGIGAVKAAQLVTVMELARRVIRAWDEEQIDQVLDSPELVARRLRSRSAGLDVEKFWV 135
Query: 141 CFSI 144
Sbjct: 136 LCLD 139
>gi|309791140|ref|ZP_07685673.1| DNA repair protein RadC [Oscillochloris trichoides DG6]
gi|308226838|gb|EFO80533.1| DNA repair protein RadC [Oscillochloris trichoides DG6]
Length = 236
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 40/120 (33%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G AL+ E+L ++L + + +A+ LL G+ A L
Sbjct: 21 PRERLRDAGPAALSDAELLAILLRVGVAGTNVLQLAQQLLLEHGGWIGLQRADYSELCRR 80
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +G+ A LK +RIL + + + + +
Sbjct: 81 HGVGEAKAATLKAALEIGRRILITGTDERPQIRSPTDVANLLMVEMGHLDQEHLRTVLLD 140
>gi|154248875|ref|YP_001409700.1| DNA repair protein RadC [Fervidobacterium nodosum Rt17-B1]
gi|154152811|gb|ABS60043.1| DNA repair protein RadC [Fervidobacterium nodosum Rt17-B1]
Length = 225
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 3/122 (2%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAPLHLLQE 83
R++ L++G AL E++ ++L KD +K L +F L + A +
Sbjct: 7 PREKLLKEGSEALETSELIAILLRTGTNGKDVLETSKELFNKFGGSLYKMSRATFDDFKS 66
Query: 84 INRIGKRVALELKLVSVASQRILKAN-WSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G + L ++R++K + LT + F
Sbjct: 67 IKGLGDVKIVTLMAALELAKRLVKEETVILDPKLTSPENVFQYC-IDMQSYPQEIVRVIF 125
Query: 143 SI 144
Sbjct: 126 LD 127
>gi|315156406|gb|EFU00423.1| DNA repair protein RadC [Enterococcus faecalis TX0043]
Length = 240
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 25 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 84
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ + Q + + + +
Sbjct: 85 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVMSSQQVAQRLLQEMKGLQQEHLICIYLN 144
>gi|217967270|ref|YP_002352776.1| DNA repair protein RadC [Dictyoglomus turgidum DSM 6724]
gi|217336369|gb|ACK42162.1| DNA repair protein RadC [Dictyoglomus turgidum DSM 6724]
Length = 228
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 1/134 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K + R R+R L GE AL+ E+L +IL +A+ L+ F +L
Sbjct: 2 KKRKIKDFPKSERPRERLLNYGEKALSDAELLAIILRTGNKNYSVYELAQNLIVDFGSLK 61
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIK-KFLTPGQPCLISVERHY 130
+ + L + IG A+++K +RI + + + + +
Sbjct: 62 RIAEVGIGELIKYPGIGITKAVQIKASIELGRRIFSEKKNYFGESILNPHDAFLIFKEDM 121
Query: 131 PMKNANNFAYCFSI 144
+ +
Sbjct: 122 FDLKEEHLFCIYMD 135
>gi|167835745|ref|ZP_02462628.1| DNA repair protein RadC [Burkholderia thailandensis MSMB43]
Length = 203
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 39/110 (35%)
Query: 35 NALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALE 94
AL+ E++ L+L +P D ++A LL RF +L + A + + IG
Sbjct: 1 AALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDFKGLRGIGPARTAI 60
Query: 95 LKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L V ++R L + + + + F F
Sbjct: 61 LVAVVELARRALAEKARERPLVDSPGAVEDYLRLLIGTRPREVFVCLFLD 110
>gi|326791184|ref|YP_004309005.1| DNA repair protein RadC [Clostridium lentocellum DSM 5427]
gi|326541948|gb|ADZ83807.1| DNA repair protein RadC [Clostridium lentocellum DSM 5427]
Length = 234
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 10/132 (7%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK----------RFATLGG 72
R ++F + G + L+ E+L ++L + + +A LL + +L G
Sbjct: 10 ERPYEKFGKYGPDYLSNTELLAILLRSGTKTYNAEELAWHLLTYGEKEKPEHIKTPSLIG 69
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
++ + L IN IG A+++ + S+RI K + + +T
Sbjct: 70 LYHISYNELMSINGIGPVKAIQILTLLELSKRITKEKYQSGEKITSPAILSCYFMEELRH 129
Query: 133 KNANNFAYCFSI 144
F
Sbjct: 130 SREERFIITLLD 141
>gi|110801616|ref|YP_699420.1| DNA repair protein RadC [Clostridium perfringens SM101]
gi|122956547|sp|Q0SR37|Y2111_CLOPS RecName: Full=UPF0758 protein CPR_2111
gi|110682117|gb|ABG85487.1| DNA repair protein, RadC family [Clostridium perfringens SM101]
Length = 227
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 4/124 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L G L+ E+L +IL + ++ ++ L G+F A L
Sbjct: 14 ERPREKLLFYGAQCLSNEELLAIILRTGNKDSNVVELSYRIIHSVGGLNGLFKASAKELM 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
E+ + + A ++ + +R + + ++ V M
Sbjct: 74 ELKGVKEAKATQILAMCELYKRFKVSELTQI-KISKPSDVAKLVLDELRMLRQE---VLI 129
Query: 143 SINI 146
IN+
Sbjct: 130 LINL 133
>gi|83814790|ref|YP_446439.1| DNA repair protein RadC [Salinibacter ruber DSM 13855]
gi|123528135|sp|Q2S042|Y2338_SALRD RecName: Full=UPF0758 protein SRU_2338
gi|83756184|gb|ABC44297.1| DNA repair protein RadC [Salinibacter ruber DSM 13855]
Length = 233
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 7/138 (5%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKD----TKSIAKALLKRFATLGG 72
++ R++ L G L+ E+L L+L D + +ALL+ + +L
Sbjct: 7 HEWDESDQPREKLLTHGPTVLSDAEVLALLLGSGTRTSDGPVSAVELGRALLQSYGSLHE 66
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWS-IKKFLTPGQPCLISVERHYP 131
V L +G A +L A +R+ + +T
Sbjct: 67 VSQRKPKELTRTRGVGPAKATKLAAAFEAGRRVESQRQQDERMQVTCPADVADVYGPLLR 126
Query: 132 MKNANNFAYCFSI--NII 147
+ F N+I
Sbjct: 127 DLDKEVFKVVHLNTANVI 144
>gi|163793591|ref|ZP_02187566.1| DNA repair protein RadC [alpha proteobacterium BAL199]
gi|159181393|gb|EDP65908.1| DNA repair protein RadC [alpha proteobacterium BAL199]
Length = 229
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 56/128 (43%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
D GH +RLR RFL G ALA YE+LEL+LF PR D K +AK L+ +F + A
Sbjct: 9 DRTGHRSRLRQRFLTVGAEALADYELLELLLFLAKPRGDVKPLAKRLIAQFGSFAEAVSA 68
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
P L ++ +G+ + L+ + R+L + L+ L +
Sbjct: 69 PADALARVDGMGEASIVALRTAQATAARLLGQPLLDRPLLSSWIQLLDYCRVAIAYQPVE 128
Query: 137 NFAYCFSI 144
+
Sbjct: 129 EVRVLYLD 136
>gi|296876566|ref|ZP_06900617.1| DNA repair protein RadC [Streptococcus parasanguinis ATCC 15912]
gi|296432559|gb|EFH18355.1| DNA repair protein RadC [Streptococcus parasanguinis ATCC 15912]
Length = 227
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + +G + L++ E+L ++L +K IA+ LL +L + L LQEI
Sbjct: 13 PRERLVSEGVDKLSHQELLSILLRTGNKQKSVYEIAQGLLSSVNSLKELSQLTLEELQEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ V +RI K + + Q +++ K + +
Sbjct: 73 SGIGRVKAIELQAVIEFGRRIHKDELMSSEQIMSSQKLAHKIQQEIGHKKQEHLVALYLN 132
Query: 145 --NII 147
NII
Sbjct: 133 TQNII 137
>gi|257420575|ref|ZP_05597565.1| DNA repair protein radC [Enterococcus faecalis X98]
gi|257162399|gb|EEU92359.1| DNA repair protein radC [Enterococcus faecalis X98]
Length = 232
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L GE AL+ E+L ++L D ++A LLK+F L + A L+ L I
Sbjct: 17 PRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAI 76
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+EL+ RI +++ + Q + + + +
Sbjct: 77 KGIGQVKAIELRAAIELGCRIYQSSQIKFGKVMSSQQVAQRLLQEMKGLQQEHLICIYLN 136
>gi|270307935|ref|YP_003329993.1| DNA repair protein RadC [Dehalococcoides sp. VS]
gi|270153827|gb|ACZ61665.1| DNA repair protein RadC [Dehalococcoides sp. VS]
Length = 228
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 42/122 (34%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R G + E+L +IL R + + A+ LL F G+ A + L
Sbjct: 14 EKPRERLQSLGAGVFSSAELLAVILGRGVTGEPVLQSAQRLLAHFGGPSGIASASVEELS 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ IG A +LK ++R + + + + + F
Sbjct: 74 KLKGIGLAKACQLKAAFELAKRARGIKGEYQPCIKTPEDVFQIIYPLVSDEKKEYFFCLM 133
Query: 143 SI 144
Sbjct: 134 LD 135
>gi|317154521|ref|YP_004122569.1| DNA repair protein RadC [Desulfovibrio aespoeensis Aspo-2]
gi|316944772|gb|ADU63823.1| DNA repair protein RadC [Desulfovibrio aespoeensis Aspo-2]
Length = 227
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+ Y+GH RLR++ L+ ALA YEILEL L +IPR+DTK +AK +++RF +L
Sbjct: 2 KETDAPHYLGHRQRLREKLLRD-SRALADYEILELALAAIIPRRDTKPLAKLMIERFGSL 60
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
A L+ I+ IG L R+ +A L+ +
Sbjct: 61 KDALMARPDQLEAISGIGPAAVAHWALTQELFARMGEARTRSGAPLSDPAEVARAAMARI 120
Query: 131 PMKNANNFAYCFSI 144
K F F
Sbjct: 121 GSKGVEEFWAAFMD 134
>gi|254520230|ref|ZP_05132286.1| DNA repair protein RadC [Clostridium sp. 7_2_43FAA]
gi|226913979|gb|EEH99180.1| DNA repair protein RadC [Clostridium sp. 7_2_43FAA]
Length = 229
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 4/133 (3%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
I R ++ L G L+ E+L +IL ++ S++ +L F L G+ +
Sbjct: 10 IPKEERPIEKLLINGPEILSNAELLAVILRTGTRGENVISLSTRILSEFDGLNGLLDIGI 69
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLISVERHYPMKNANN 137
+ I I A ++ + +R N ++ + +
Sbjct: 70 SEITSIKGIKNIKASQILAIGELFRRFNSLNLIREGNSISSPRDIAKLLINEMMSLKQEI 129
Query: 138 FAYCFSI---NII 147
NII
Sbjct: 130 LKLIMLDTKNNII 142
>gi|303245835|ref|ZP_07332117.1| DNA repair protein RadC [Desulfovibrio fructosovorans JJ]
gi|302492618|gb|EFL52486.1| DNA repair protein RadC [Desulfovibrio fructosovorans JJ]
Length = 228
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
+K Y+GH RL+DR + ALA YE+LEL+L + R+D K +AK LL RF +L
Sbjct: 3 TKKETPHYLGHRRRLKDRLMSD-PRALADYEVLELVLGYVNVRRDNKPLAKELLSRFGSL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
G A + L+++ G + L A R + + L
Sbjct: 62 RGTLLARMEELRDVPGFGPGAEEFVTLWREAWARFHEQPARDRIVLNAPDIVADMARARI 121
Query: 131 PMKNANNFAYCFSI 144
K F
Sbjct: 122 GAKEREEFWMALVD 135
>gi|317498488|ref|ZP_07956782.1| helix-hairpin-helix domain-containing protein [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316894181|gb|EFV16369.1| helix-hairpin-helix domain-containing protein [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 165
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 3/143 (2%)
Query: 5 RMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
+ S K L + R ++ + G L+ E+L +IL + +A +L
Sbjct: 18 KGSDMEEKHQTLKELPVSERPYEKCEKNGTAMLSDAELLAVILRSGTKDQTAIDLATKVL 77
Query: 65 KRFA---TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
+ G+ LQ+I IGK A+++ ++ S+R+ A K
Sbjct: 78 SIDPFYEGILGICHTSREELQKIPGIGKVKAMQILCIAELSKRLASAKVEDKISFHSPAS 137
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ F +
Sbjct: 138 IADYYMERMRHLSREEMILIFLM 160
>gi|266623040|ref|ZP_06115975.1| DNA repair protein RadC [Clostridium hathewayi DSM 13479]
gi|288865204|gb|EFC97502.1| DNA repair protein RadC [Clostridium hathewayi DSM 13479]
Length = 231
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 4/127 (3%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL---KRFATLGGVFGAPL 78
+R ++ LQ G L+ E+L +I+ + ++A+ +L + G+ L
Sbjct: 12 DDRPYEKCLQTGPERLSDAELLSIIIRTGSREDSSLALAQKILALNYPSEGILGLLHLSL 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKAN-WSIKKFLTPGQPCLISVERHYPMKNANN 137
L +I IG+ +L + S+RI K T + +
Sbjct: 72 PELTQIKGIGRVKGAQLLCIGELSKRIWKKAVLEDVASFTNPEDIVNYYVEDMRHMEQEQ 131
Query: 138 FAYCFSI 144
Sbjct: 132 IRIMLLN 138
>gi|163814086|ref|ZP_02205478.1| hypothetical protein COPEUT_00239 [Coprococcus eutactus ATCC 27759]
gi|158450535|gb|EDP27530.1| hypothetical protein COPEUT_00239 [Coprococcus eutactus ATCC 27759]
Length = 264
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG---GVFGAPLH 79
R ++ + G L+ E+L +IL R + + A +L G+
Sbjct: 39 ERPYEKSYKYGVEVLSDAELLAVILRTGSQRANALTTAYRILDAHPIHKGIVGLNYLTTG 98
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L++I +GK A+++K ++ S+R+ +A Q +
Sbjct: 99 DLEDIEGVGKVKAVQMKCLAEISRRMARATLKPFMSFHSPQSIADYFMENTRYLEKEYVY 158
Query: 140 YCFSI 144
Sbjct: 159 LLMFD 163
>gi|167718469|ref|ZP_02401705.1| DNA repair protein RadC [Burkholderia pseudomallei DM98]
Length = 203
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 39/110 (35%)
Query: 35 NALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALE 94
AL+ E++ L+L +P D ++A LL RF +L + A + + IG
Sbjct: 1 AALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDFKGLRGIGPARTAI 60
Query: 95 LKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L V ++R L + + + + F F
Sbjct: 61 LVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCLFLD 110
>gi|294084235|ref|YP_003550993.1| DNA repair protein RadC [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663808|gb|ADE38909.1| DNA repair protein RadC [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 247
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
D+ D GH R+R R L KG ++L E+LE++L+ R+DTK +AK L+ +F +L G
Sbjct: 23 DNDPDKAGHRKRMRARILDKGADSLTELELLEVLLYAGNARRDTKPLAKRLMVKFKSLSG 82
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
V A L+ ++ +G LKLV + + + LT
Sbjct: 83 VLRADQADLRAVDEMGDAYIAALKLVESVGMHLAHSRIKDQPILTNWVQVQEYCINRLAH 142
Query: 133 KNANNFAYCFSIN 145
+ +F N
Sbjct: 143 QPIEHFLILCLDN 155
>gi|225419747|ref|ZP_03762050.1| hypothetical protein CLOSTASPAR_06085 [Clostridium asparagiforme
DSM 15981]
gi|225041614|gb|EEG51860.1| hypothetical protein CLOSTASPAR_06085 [Clostridium asparagiforme
DSM 15981]
Length = 231
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 14/148 (9%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+E RM P++ R ++ + G L+ E+L +I+ + + +A
Sbjct: 1 MERIRMKDLPTE----------QRPYEKCRKNGPETLSDGELLSVIIRTGSREESSLELA 50
Query: 61 KALLKRFA---TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRIL-KANWSIKKFL 116
+ +L L G+ L L ++ IG ++L V+ S+RI + + +
Sbjct: 51 ERILDLGGPGDGLVGLLHHSLPDLMKVKGIGMVKGVQLACVAELSRRIWKRKTLACRTLF 110
Query: 117 TPGQPCLISVERHYPMKNANNFAYCFSI 144
T F
Sbjct: 111 TCPGEIADYYMEDMRHLEKEEIRAMFLD 138
>gi|257452349|ref|ZP_05617648.1| DNA repair protein radC [Fusobacterium sp. 3_1_5R]
gi|317058892|ref|ZP_07923377.1| DNA repair protein radC [Fusobacterium sp. 3_1_5R]
gi|313684568|gb|EFS21403.1| DNA repair protein radC [Fusobacterium sp. 3_1_5R]
Length = 227
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
L GH RLR R++++G N+L YE+LEL+L +PRKDTK++AK LL RF TL V
Sbjct: 2 EILKNEGHRERLRKRYIERGFNSLQEYEVLELLLTYALPRKDTKALAKELLHRFGTLSAV 61
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLT--PGQPCLISVERHYP 131
A LQ I I + ++ L V + + + + +K + + + V
Sbjct: 62 CKAKTEELQSIKGIKENTSILLHFVGDLQKELFRNSLQEEKNIHIQRKEDLISYVRAQIG 121
Query: 132 MKNANNFAYCFSI 144
+N F F
Sbjct: 122 FENREKFFVLFLN 134
>gi|325106478|ref|YP_004276132.1| DNA replication and repair protein RadC [Pedobacter saltans DSM
12145]
gi|324975326|gb|ADY54310.1| DNA replication and repair protein RadC [Pedobacter saltans DSM
12145]
Length = 234
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 10/139 (7%)
Query: 16 LDYIGH--------HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
Y H +R R++ L G L+ E++ +++ + ++K +L +
Sbjct: 3 PHYKPHIPITTWAEEDRPREKLLLHGRRTLSDSELIAILIGSGSKNESAVDLSKRILNHY 62
Query: 68 -ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSI-KKFLTPGQPCLIS 125
L + + L + IG+ A+ + +R A +T
Sbjct: 63 QNNLDALGRLSVQELSKFKGIGEAKAISIIAALELGRRRKDAENEQLHSKITSSFDVYKL 122
Query: 126 VERHYPMKNANNFAYCFSI 144
+ H+ F
Sbjct: 123 LSSHFFDLLHEEFWIVLLN 141
>gi|218888170|ref|YP_002437491.1| DNA repair protein RadC [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218759124|gb|ACL10023.1| DNA repair protein RadC [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 225
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 1/132 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
+ Y GH R+R R + AL YE+LEL+L ++ R+DTK +AK LL RF +L G
Sbjct: 2 TTGPHYHGHRERVRARL-RNDPAALPDYEVLELLLGHVLLRRDTKPLAKELLSRFGSLRG 60
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
V A L + G + L+ R ++ ++ L Q
Sbjct: 61 VLDARPSELMGVKGFGPAMLDFWALLREVMARYVETPAREREVLGSPQAVAEMARMRLAA 120
Query: 133 KNANNFAYCFSI 144
Sbjct: 121 SPHEEVWVALLD 132
>gi|78189473|ref|YP_379811.1| DNA repair protein RadC [Chlorobium chlorochromatii CaD3]
gi|123579488|sp|Q3AQF7|Y1513_CHLCH RecName: Full=UPF0758 protein Cag_1513
gi|78171672|gb|ABB28768.1| DNA replication and repair protein RadC [Chlorobium chlorochromatii
CaD3]
Length = 222
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
L I NR R+RFLQ G AL+ E+L LIL + + ++ RF +L +
Sbjct: 2 KLHDIDPDNRPRERFLQHGAAALSPAELLALILRSGSQQYNILDTCHHIINRF-SLEKLS 60
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
L LQ+I IG+ A+++ + ++R+ + + + + + P ++
Sbjct: 61 DVSLKELQQIKGIGESKAMQIVAIFELNRRLHYSR-NQLRKIMAAGDVFEYMSGRIPDES 119
Query: 135 ANNFAYCFSI 144
+
Sbjct: 120 KEHLFVLHLN 129
>gi|145628111|ref|ZP_01783912.1| DNA repair protein RadC [Haemophilus influenzae 22.1-21]
gi|144979886|gb|EDJ89545.1| DNA repair protein RadC [Haemophilus influenzae 22.1-21]
Length = 105
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 44/102 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + A +
Sbjct: 2 PREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSV 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
+G ++L+ ++ ++R LK + + + +
Sbjct: 62 KGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFF 103
>gi|70608422|gb|AAZ04486.1| DNA repair protein RadC [Acetobacter aceti]
Length = 274
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 61/126 (48%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
GH R+R R + +G ALA YE+LE++L+ +PRKDTK +AK+L+ F + V A
Sbjct: 44 TGHRKRMRQRVMAQGAAALADYELLEMLLYVGVPRKDTKPLAKSLINAFGSFQAVIEAKE 103
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L++I + + A L+ V+ + R+ + ++FL L + +
Sbjct: 104 EDLRQIGGVTRASAALLQNVARVADRLPENGAESRRFLGNWDSILEYADVYLAHTPKGQV 163
Query: 139 AYCFSI 144
F
Sbjct: 164 RALFLD 169
>gi|300726257|ref|ZP_07059710.1| DNA repair protein RadC [Prevotella bryantii B14]
gi|299776454|gb|EFI73011.1| DNA repair protein RadC [Prevotella bryantii B14]
Length = 230
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 40/127 (31%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAP 77
+R R++ + G L+ E+L +++ ++ + K ++ +
Sbjct: 10 WAEEDRPREKMERLGAENLSNAELLAILIGSGSSKESAVDLMKRVMNDCNNNLNTLGKLS 69
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L+ L++ N +G ++ + +R + K L + +
Sbjct: 70 LNDLEKYNGLGPAKSITILAACELGKRRQREEVEKKTSLNCASDIYEYMHPKMQDLDVEE 129
Query: 138 FAYCFSI 144
Sbjct: 130 AWIILMN 136
>gi|312867735|ref|ZP_07727941.1| DNA repair protein RadC [Streptococcus parasanguinis F0405]
gi|311096798|gb|EFQ55036.1| DNA repair protein RadC [Streptococcus parasanguinis F0405]
Length = 227
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + +G + L++ E+L ++L +K IA+ LL +L + L LQEI
Sbjct: 13 PRERLVSEGVDKLSHQELLSILLRTGNKQKSVYEIAQDLLSSVNSLKELSQLTLEELQEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ V +RI K + + Q +++ K + +
Sbjct: 73 SGIGRVKAIELQAVIEFGRRIHKDELMSSEQIMSSQKLAHKIQQEIGHKKQEHLVALYLN 132
>gi|319795329|ref|YP_004156969.1| DNA repair protein radc [Variovorax paradoxus EPS]
gi|315597792|gb|ADU38858.1| DNA repair protein RadC [Variovorax paradoxus EPS]
Length = 225
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ + +G ALA E+L L+L + K+ +A+ LL+RF L G+ L
Sbjct: 9 DARPREKLIARGVTALADAELLALLLRTGVAGKNVLQMAQELLERFGGLSGLLHTGPEEL 68
Query: 82 QEINRI-GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
+ + + G EL V ++R + + V+ H + FA
Sbjct: 69 KLVKGMGGDAKRAELIAVLELARRAMAEQLKERTVFDSPDAVKQYVQLHIGSRPHEVFAV 128
Query: 141 CFSI 144
F
Sbjct: 129 LFLD 132
>gi|260061882|ref|YP_003194962.1| putative DNA repair protein [Robiginitalea biformata HTCC2501]
gi|88786015|gb|EAR17184.1| putative DNA repair protein [Robiginitalea biformata HTCC2501]
Length = 242
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 1/124 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL-KRFATLGGVFGAPLHLL 81
R R+R L G AL+ E+L ++L + ++A+ +L +L G+ + L
Sbjct: 27 ERPRERLLDAGVTALSDAELLAVLLGSGTRGETALALARRILGNAGGSLSGLERISVEGL 86
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + +G A + ++R+ + + ++ + F
Sbjct: 87 RSFSGVGPAKAAAIAAALEVARRLANGPGLKRIRIRESADAFRMLQPVLARLDHEEFWVL 146
Query: 142 FSIN 145
+ N
Sbjct: 147 YLNN 150
>gi|315500042|ref|YP_004088845.1| DNA repair protein radc [Asticcacaulis excentricus CB 48]
gi|315418054|gb|ADU14694.1| DNA repair protein RadC [Asticcacaulis excentricus CB 48]
Length = 244
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 9/143 (6%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
++ + D+ GH RLRDR + G + L YE+LELILFR IP++D K +AKALL RF +L
Sbjct: 9 TETTLPDHGGHRQRLRDRARRGGTSVLPDYEVLELILFRSIPQRDVKPLAKALLSRFGSL 68
Query: 71 GGVFGAPLHLLQEINR---------IGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
V APL + +++ + +AL+L+L+ A++R++ ++ Q
Sbjct: 69 SAVLSAPLEDMLQVSALDNKGRSLKMTPDIALDLQLMFEATRRLMAEPLKRSTVISSWQA 128
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
L + + F F
Sbjct: 129 LLSYLRVTLAHEPREQFRLLFLD 151
>gi|329113314|ref|ZP_08242095.1| DNA repair protein RadC [Acetobacter pomorum DM001]
gi|326697139|gb|EGE48799.1| DNA repair protein RadC [Acetobacter pomorum DM001]
Length = 274
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 64/126 (50%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
GH R+R R L +G +LA YE+LE++L+ IPRKDTK +AK+L+ F TL V A
Sbjct: 44 TGHRKRMRQRVLAQGAASLADYELLEMLLYVGIPRKDTKPLAKSLINTFGTLQAVLEAGE 103
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L++I+ + + A L+ V+ + R+ ++ ++FL L + +
Sbjct: 104 ENLRQISGVTRASAAVLQDVACVADRLPESGEESRQFLGNWDSILEYADVYLANAPRGQV 163
Query: 139 AYCFSI 144
F
Sbjct: 164 RALFLD 169
>gi|225868493|ref|YP_002744441.1| DNA repair protein RadC [Streptococcus equi subsp. zooepidemicus]
gi|259551902|sp|C0MEY7|Y914_STRS7 RecName: Full=UPF0758 protein SZO_09140
gi|225701769|emb|CAW99162.1| DNA repair protein RadC [Streptococcus equi subsp. zooepidemicus]
Length = 225
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 48/126 (38%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
H R+R ++ G L+ E+L ++L K ++ LL +L + L
Sbjct: 6 TDHKLMPRERLIRLGPEKLSNQELLAILLRTGNKEKHVLELSAYLLSSLDSLADLKKFSL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
LQ ++ IGK A+E+K + + RI A ++ + + K +
Sbjct: 66 QELQRLSGIGKVKAIEIKAMLELADRIQIAGQAVADPVLSSAQVAEKMMIELGDKQQEHL 125
Query: 139 AYCFSI 144
+
Sbjct: 126 VAIYLD 131
>gi|322375315|ref|ZP_08049828.1| DNA repair protein RadC [Streptococcus sp. C300]
gi|321279578|gb|EFX56618.1| DNA repair protein RadC [Streptococcus sp. C300]
Length = 226
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G AL+ E+L ++L + I++ +L +L + L LQ +
Sbjct: 13 PRERLVKEGVEALSNQELLAILLRTGTRTANVFEISQKVLNSLTSLTDLKKMTLQELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ V RI K + + Q +++ K + +
Sbjct: 73 SGIGRIKAIELQAVIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 132
>gi|253577906|ref|ZP_04855178.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850224|gb|EES78182.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 239
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-----RFATLG 71
+ R ++ +GE +L E+L +IL K++ ++A+ +LK + L
Sbjct: 9 KQLPREQRPYEKCFMQGEGSLNDTELLAVILRSGTSGKNSLALAQEILKFMESSSYPGLM 68
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
G+ + L +I+ IG+ A++LK + S+RI KA + +
Sbjct: 69 GLMHVSVQDLMKIHGIGQVKAVQLKCIGELSKRIAKAAARPQIVMNNPSSIAAYYMEELR 128
Query: 132 MKNANNFAYCFSI 144
+ S
Sbjct: 129 HEEQELVICMMSD 141
>gi|194336045|ref|YP_002017839.1| DNA repair protein RadC [Pelodictyon phaeoclathratiforme BU-1]
gi|229470323|sp|B4SF75|Y935_PELPB RecName: Full=UPF0758 protein Ppha_0935
gi|194308522|gb|ACF43222.1| DNA repair protein RadC [Pelodictyon phaeoclathratiforme BU-1]
Length = 222
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 2/130 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ NR R+R L+ G +L+ E+L +IL + L+ R+ +L +
Sbjct: 2 RIHDFDPDNRPRERLLRSGAASLSPAELLAIILRTGTKNLNIVDTCNELIARY-SLEKLA 60
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
L L+++ IG A+++ + ++R+ + K + + + P +
Sbjct: 61 NITLEELKKVKGIGDAKAMQIVAIFELNKRLHYSRNLNK-KIQAARDVFEYMAGRVPDET 119
Query: 135 ANNFAYCFSI 144
+
Sbjct: 120 KEHLFVLHLN 129
>gi|218282132|ref|ZP_03488431.1| hypothetical protein EUBIFOR_01006 [Eubacterium biforme DSM 3989]
gi|218216925|gb|EEC90463.1| hypothetical protein EUBIFOR_01006 [Eubacterium biforme DSM 3989]
Length = 224
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L+ G +L+ E++ LIL + IA +LK L + ++ L
Sbjct: 10 QRPREKALRYGLESLSDLELVALILQSGNKNRSVFEIASDVLKESEGLSKLMTMHVNTLM 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I I + AL+L S+R++K+ L + + + Y + F +
Sbjct: 70 QIQGIREVKALQLLASVELSKRVIKSKVYHAPILK-PEDVIEWFKFEYGTMSQECFIALY 128
Query: 143 SI 144
Sbjct: 129 LD 130
>gi|187478895|ref|YP_786919.1| DNA repair protein RadC [Bordetella avium 197N]
gi|123514372|sp|Q2KXW4|Y2405_BORA1 RecName: Full=UPF0758 protein BAV2405
gi|115423481|emb|CAJ50015.1| DNA repair protein [Bordetella avium 197N]
Length = 225
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 41/115 (35%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G L E+L L L + +A+ LL R L G+F L
Sbjct: 11 QRPRERLLRLGAPLLNDAELLALCLRTGRHGCNALELAQRLLTRHGGLRGIFALSAQELC 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+G A L + S+R ++ ++ + + + +
Sbjct: 71 TEPGLGVAKACSLLVAPELSRRSIEETLLGRQAMKHPEEVRRYCLTALAHQPVEH 125
>gi|222152997|ref|YP_002562174.1| DNA repair protein RadC [Streptococcus uberis 0140J]
gi|254789663|sp|B9DS19|Y843_STRU0 RecName: Full=UPF0758 protein SUB0843
gi|222113810|emb|CAR41883.1| DNA repair protein RadC [Streptococcus uberis 0140J]
Length = 226
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ +Q G L++ E+L ++L K +A +L +L L LQ++
Sbjct: 13 PREKLVQYGVEQLSHQELLAILLRTGNKEKHVMELASHILHCLESLADFDKLSLQELQQL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IGK A+ELK + RI KA S + + K + +
Sbjct: 73 PGIGKVKAIELKAMVELCHRIQKAKSSHSIQILSSYQVAKRMMHELGDKKQEHLIAIYLD 132
>gi|306821365|ref|ZP_07454973.1| DNA repair protein RadC [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304550583|gb|EFM38566.1| DNA repair protein RadC [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 229
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 4/129 (3%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ L G + L+ E+L + + + IAK L+ L + ++++
Sbjct: 14 RPREKLLSGGVSTLSDEELLAIFIDNGTKDYNAIEIAKQLINLAGDLSNLAKFDVNMMTM 73
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYPMKNANNFAYCF 142
+ IG ++ + R++K + K +T + + + F
Sbjct: 74 VKGIGVAKGCKIVSAIEFANRVVKNSAKKKDESITSPNQLIDMFSVEFETLSVEVFKVIC 133
Query: 143 SI---NIIF 148
+IIF
Sbjct: 134 LDTKKHIIF 142
>gi|257465859|ref|ZP_05630170.1| DNA repair protein radC [Fusobacterium gonidiaformans ATCC 25563]
gi|315917016|ref|ZP_07913256.1| DNA repair protein radC [Fusobacterium gonidiaformans ATCC 25563]
gi|313690891|gb|EFS27726.1| DNA repair protein radC [Fusobacterium gonidiaformans ATCC 25563]
Length = 227
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR R+L++G ++L YE+LEL+L +PRKDTK+++K LL RF TL V A
Sbjct: 8 GHRERLRKRYLERGFSSLQEYEVLELLLTYALPRKDTKALSKELLHRFGTLSAVCKAKTE 67
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLT--PGQPCLISVERHYPMKNANN 137
LQ I I + ++ L V + + + + +K + + + V +N
Sbjct: 68 ELQSIKGIKENTSILLHFVGDLQKELFRNSLQEEKNIHIQRKEDLISYVRAQIGFENREK 127
Query: 138 FAYCFSI 144
F F
Sbjct: 128 FFVLFLN 134
>gi|257869998|ref|ZP_05649651.1| DNA repair protein RadC [Enterococcus gallinarum EG2]
gi|257804162|gb|EEV32984.1| DNA repair protein RadC [Enterococcus gallinarum EG2]
Length = 226
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 42/120 (35%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L G AL+ E+L ++L + +A +L F L + L LQ I
Sbjct: 12 PRERLLHYGAEALSNQELLAILLRTGSHPFNVIELAGQILNEFEDLYELKHVTLDELQAI 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ A+ELK RI +A + + + +
Sbjct: 72 RGVGQIKAIELKATVELGARIQRAAQPKYGRVHSSVDIANQMMEELKDYQQEHLLCLYLN 131
>gi|302670846|ref|YP_003830806.1| DNA repair protein RadC [Butyrivibrio proteoclasticus B316]
gi|302395319|gb|ADL34224.1| DNA repair protein RadC [Butyrivibrio proteoclasticus B316]
Length = 237
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 4/125 (3%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK----RFATLGGVFGAPLHL 80
+RFL G +L E+L +I+ IA ++ + L +F L
Sbjct: 19 PYERFLAYGPESLTDTELLAIIIRTGSNCNSPVDIAGQIMDLGIGKEKGLNSLFSLTLDE 78
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L I+ IG+ A++LK ++ ++R+ +
Sbjct: 79 LMSIHGIGQIKAVKLKCIAEIAKRMSSQTRGELLNCNNPSDVADYFMEKLRHEEQEKTIL 138
Query: 141 CFSIN 145
N
Sbjct: 139 LCLDN 143
>gi|110598384|ref|ZP_01386657.1| DNA repair protein RadC [Chlorobium ferrooxidans DSM 13031]
gi|110339993|gb|EAT58495.1| DNA repair protein RadC [Chlorobium ferrooxidans DSM 13031]
Length = 223
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 2/130 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + NR R+RFL G +L+ E+L +IL + L+ R L +
Sbjct: 2 RIHDLDPENRPRERFLTTGPASLSPAELLAIILRSGTKNHNIVDTCNELIARVG-LEKLS 60
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
L LQ+ IG+ A+++ + ++R+ + + K + + + P +
Sbjct: 61 DLTLSELQKTRGIGEAKAMQIMAIFELNRRLHYSR-NQNKKIQAARDVFEYMAGRIPDEK 119
Query: 135 ANNFAYCFSI 144
+
Sbjct: 120 KEHLFVLHLN 129
>gi|322389482|ref|ZP_08063034.1| DNA repair protein RadC [Streptococcus parasanguinis ATCC 903]
gi|321143860|gb|EFX39286.1| DNA repair protein RadC [Streptococcus parasanguinis ATCC 903]
Length = 227
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + +G + L++ E+L ++L +K IA+ LL +L + L LQEI
Sbjct: 13 PRERLVSEGVDKLSHQELLSILLRTGNKQKSVYEIAQGLLSSVNSLKELSQLTLEELQEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ V +RI K + + Q +++ K + +
Sbjct: 73 SGIGRVKAIELQAVIEFGRRIHKDELMSSEQIMSSQKLAHKIQQEIGHKKQEHLVALYLN 132
>gi|262282816|ref|ZP_06060583.1| DNA repair protein RadC [Streptococcus sp. 2_1_36FAA]
gi|262261068|gb|EEY79767.1| DNA repair protein RadC [Streptococcus sp. 2_1_36FAA]
Length = 226
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G L+ E+L +++ +++ IA +L ++L + L LQ I
Sbjct: 13 PRERLVRLGAEQLSNQELLSILIRTGNKKENVFQIASRILASVSSLTELRHMTLSELQGI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI KA + + Q +++ K + +
Sbjct: 73 SGIGQVKAIELQAMIELGSRISKAENFEGERILSSQKLAKKMQQELSHKKQEHLVALYLN 132
>gi|258542142|ref|YP_003187575.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-01]
gi|256633220|dbj|BAH99195.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-01]
gi|256636279|dbj|BAI02248.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-03]
gi|256639332|dbj|BAI05294.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-07]
gi|256642388|dbj|BAI08343.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-22]
gi|256645443|dbj|BAI11391.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-26]
gi|256648496|dbj|BAI14437.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-32]
gi|256651549|dbj|BAI17483.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654540|dbj|BAI20467.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-12]
Length = 274
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 63/126 (50%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
GH R+R R L +G +LA YE+LE++L+ IPRKDTK +AK L+ F +L V A
Sbjct: 44 TGHRKRMRQRVLAQGAASLADYELLEMLLYVGIPRKDTKPLAKNLINVFGSLPAVLEAGE 103
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L++I+ + + A L+ ++ + R+ ++ ++FL L + +
Sbjct: 104 ENLRQISGVTRASAAVLQDIAYVADRLPESGEETRQFLGNWDSILEYADVYLAKATRGQV 163
Query: 139 AYCFSI 144
F
Sbjct: 164 RALFLD 169
>gi|194333569|ref|YP_002015429.1| DNA repair protein RadC [Prosthecochloris aestuarii DSM 271]
gi|229470324|sp|B4S6M7|Y735_PROA2 RecName: Full=UPF0758 protein Paes_0735
gi|194311387|gb|ACF45782.1| DNA repair protein RadC [Prosthecochloris aestuarii DSM 271]
Length = 223
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + NR R+RFL+ G +AL+ E++ LIL + + + +L + L +
Sbjct: 2 RIHDLDPENRPRERFLRSGVSALSSAELMALILKTGTKKHNIIETCQEMLSIYG-LEKLA 60
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
L LQ+IN IG A+++K V +R+ + K + + ++ P +
Sbjct: 61 DLSLAELQKINGIGPAKAMQIKAVFELHRRMHFRRNTNK-KIRSARDVFDYMQGRLPDEM 119
Query: 135 ANNFAYCFSINI 146
+ F +N+
Sbjct: 120 REH---LFLLNL 128
>gi|239909102|ref|YP_002955844.1| DNA repair protein RadC [Desulfovibrio magneticus RS-1]
gi|239798969|dbj|BAH77958.1| DNA repair protein RadC [Desulfovibrio magneticus RS-1]
Length = 228
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 53/134 (39%), Gaps = 1/134 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
SK Y+GH RL+DR L ALA YE+LEL+L + R+D K +AK LL RF +L
Sbjct: 3 SKKEPPHYLGHRRRLKDRLLDD-PRALAKYEVLELVLGYVNVRRDNKPLAKELLARFGSL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
GV A L+ + G L L R + + L
Sbjct: 62 RGVLTARFEELRGVPGFGAGAEEFLTLWREVWARFHEQPMRDRAVLGSPDVVAEMARARI 121
Query: 131 PMKNANNFAYCFSI 144
+K F
Sbjct: 122 GVKEHEEFWMALVD 135
>gi|197120145|ref|YP_002140572.1| DNA repair protein RadC [Geobacter bemidjiensis Bem]
gi|197089505|gb|ACH40776.1| protein of unknown function DUF2466 [Geobacter bemidjiensis Bem]
Length = 231
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 5/131 (3%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIP--RKDTKSIAKALLKRFATLGGVFGA 76
R R++ +Q G + L+ E+L LIL R+ + + L+ +F +L + A
Sbjct: 8 WPEKERPREKLMQHGVSFLSEAELLALILKSGDAASRRSALDLGRELMLQFGSLSLLADA 67
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRIL---KANWSIKKFLTPGQPCLISVERHYPMK 133
LQ++ IG A + ++RI + T + + +
Sbjct: 68 SCSELQKVKGIGPAKATCILAALDLARRIKERDRRPIESLTRFTSASQVFEHLNPEFRDR 127
Query: 134 NANNFAYCFSI 144
+ F
Sbjct: 128 HKEQFMALLLD 138
>gi|226324950|ref|ZP_03800468.1| hypothetical protein COPCOM_02742 [Coprococcus comes ATCC 27758]
gi|225206298|gb|EEG88652.1| hypothetical protein COPCOM_02742 [Coprococcus comes ATCC 27758]
Length = 236
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 40/127 (31%), Gaps = 5/127 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-----RFATLGGVFGAP 77
R ++ + G +L E+L ++L + +A+ L + +
Sbjct: 14 ERPYEKCERFGAGSLTDIELLAVLLRTGTKGESALDLARKLFYPGEGTQPQAKAHLQSWT 73
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L +I+ IG+ A+++ + S+R+ + + + +
Sbjct: 74 KEELLKISGIGRVKAIQILCLCELSKRMSQLSAREDLDFSRPDTIAAYYMEDMRYYRQEH 133
Query: 138 FAYCFSI 144
Sbjct: 134 LKLLMLN 140
>gi|195978173|ref|YP_002123417.1| DNA repair protein RadC [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|229485563|sp|B4U337|Y1052_STREM RecName: Full=UPF0758 protein Sez_1052
gi|195974878|gb|ACG62404.1| DNA repair protein RadC-like [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 225
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 48/126 (38%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
H R+R ++ G L+ E+L ++L K ++ LL +L + L
Sbjct: 6 TDHKLMPRERLIRLGPEKLSNQELLAILLRTGNKEKHVLELSAYLLSSLDSLADLKKFSL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
LQ ++ IGK A+E+K + + RI A ++ + + K +
Sbjct: 66 QELQRLSGIGKVKAIEIKAMLELADRIQIAGQAVAAPVLSSAQVAEKMMIELGDKQQEHL 125
Query: 139 AYCFSI 144
+
Sbjct: 126 VAIYLD 131
>gi|300867663|ref|ZP_07112308.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300334246|emb|CBN57480.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 243
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALL-----KRFATLGGVFG 75
R R+R + G +L+ E++ ++L P K + + +L + L +
Sbjct: 14 ERPRERLMAIGAKSLSTAELIAILLGTGQGPGKLSAVGLGQFILNQLSLHQRDPLSILRN 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L +I+ IG A + +R+ ++ + Q ++ + K
Sbjct: 74 ISVQELTQIHGIGPAKATTILAAVELGKRVFQSRSPDLAMIDSPQAAADALSQDLMWKQQ 133
Query: 136 NNFAYCFSI 144
+FA
Sbjct: 134 EHFAVLLLD 142
>gi|294101601|ref|YP_003553459.1| DNA repair protein RadC [Aminobacterium colombiense DSM 12261]
gi|293616581|gb|ADE56735.1| DNA repair protein RadC [Aminobacterium colombiense DSM 12261]
Length = 224
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R ++G AL+ E++ ++L KD ++ LL F L G+ A + +
Sbjct: 10 ERPRERLFREGATALSLAELIAILLRTGSENKDVLGLSGELLHLFGGLKGISKASISEIL 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ +GK L +R++ + +I+ + L + R + F
Sbjct: 70 QVKGMGKAKVAVLVAALELGKRLMACDTNIESERDEWRKTLSYLCRLLSEEEREIIVSLF 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|171912382|ref|ZP_02927852.1| DNA repair protein RadC [Verrucomicrobium spinosum DSM 4136]
Length = 231
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 2/131 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + ++R R+R L G ++L E+L + + +P ++ +A+ LLK + TL +
Sbjct: 4 RIQDLPENDRPRERLLNTGADSLTNAELLAIFINTGLPGENAVQVAQRLLKTYRTLRNLS 63
Query: 75 GAPLHLLQE-INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
LQ+ +G L +R + + + + +
Sbjct: 64 RRSAKELQKEFKGLGPAKTAHLVAAFELGRRAAQEEVLE-DKMDSPELVYRYLGADMARQ 122
Query: 134 NANNFAYCFSI 144
Sbjct: 123 GYETLRILVLN 133
>gi|295135718|ref|YP_003586394.1| DNA repair protein RadC [Zunongwangia profunda SM-A87]
gi|294983733|gb|ADF54198.1| DNA repair protein RadC [Zunongwangia profunda SM-A87]
Length = 232
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 1/139 (0%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-R 66
+ SK + +R R++ L+KG+ AL+ E++ +++ ++ ++K +L
Sbjct: 2 EEQSKGLSIKKWAIDDRPREKLLKKGKLALSDSELIAILIGSGNRKETAVELSKRILAAT 61
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
L + + L + IG+ A+ + +R + + +T + +
Sbjct: 62 QNNLSELGKLSVGQLCKFKGIGEAKAITIIAALELGRRRRLESALERIKITSSRSVFELM 121
Query: 127 ERHYPMKNANNFAYCFSIN 145
+ F + N
Sbjct: 122 QPLIGELPHEEFWIIYLNN 140
>gi|320546653|ref|ZP_08040965.1| DNA repair protein RadC [Streptococcus equinus ATCC 9812]
gi|320448708|gb|EFW89439.1| DNA repair protein RadC [Streptococcus equinus ATCC 9812]
Length = 226
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 48/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G L+ E+L ++L + +A +LK +L L LQ+I
Sbjct: 13 PRERLRDLGAEQLSNQELLSILLRTGTKTRPVLEVANDILKHIDSLADFQHLSLQELQKI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG ++E+K + ++RI KA + K+ + + + + + +
Sbjct: 73 KGIGHVKSIEIKAMIELAKRISKAEYVQKERIMSSERLARKMMLELSDQKQEHLVAIYLD 132
>gi|154494083|ref|ZP_02033403.1| hypothetical protein PARMER_03428 [Parabacteroides merdae ATCC
43184]
gi|154086343|gb|EDN85388.1| hypothetical protein PARMER_03428 [Parabacteroides merdae ATCC
43184]
Length = 226
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 2/128 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGV 73
+ +R R++ L KG +L+ E+L +++ R+ +++ +L L +
Sbjct: 2 KIKEWAEEDRPREKMLLKGIASLSDAELLAILIGSGNSRETAVQLSQRILNSVNNNLNAL 61
Query: 74 FGAPLHLLQ-EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
+ L + IGK A+ + +R ++ + +
Sbjct: 62 GKLSVKELMFKFKGIGKVKAITINAALELGKRRGNSDPVQRPVIHSSSDVYRIFYPLLCD 121
Query: 133 KNANNFAY 140
Sbjct: 122 LPHEELWI 129
>gi|255530732|ref|YP_003091104.1| DNA repair protein RadC [Pedobacter heparinus DSM 2366]
gi|255343716|gb|ACU03042.1| DNA repair protein RadC [Pedobacter heparinus DSM 2366]
Length = 232
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKA-LLKRFATLGGVFGAP 77
+R R++ L G L E++ +++ + ++K LL L + A
Sbjct: 13 WAEADRPREKLLLNGRRHLTDAELIAILIGSGNKNETAVDLSKRVLLFYNNDLDALGKAS 72
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L + IG A+ + +R + + + ++ + N
Sbjct: 73 VKDLSKFKGIGGAKAISIVAALELGRRRKETEGRDVVKVFSSKDAFEALIPVFADLNHEE 132
Query: 138 FAYCFSI 144
F
Sbjct: 133 FWILILN 139
>gi|310829102|ref|YP_003961459.1| DNA repair protein RadC [Eubacterium limosum KIST612]
gi|308740836|gb|ADO38496.1| DNA repair protein RadC [Eubacterium limosum KIST612]
Length = 234
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 5/128 (3%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHL 80
R R++ ++ G ++L+ E++ +I+ + + +L+ F L FG +
Sbjct: 16 DERPREKLIKHGVHSLSNAELIGIIIQTGCQDATAVELGQRILRAFDNDLSAFFGMSIEE 75
Query: 81 LQE---INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L + IG A ++K +R+ + + + + +
Sbjct: 76 LDRNALLKGIGPAKACQIKAAIELGRRV-NTRPPEQPKIGSPKDVATLLTDELRYLKQEH 134
Query: 138 FAYCFSIN 145
F N
Sbjct: 135 FMILLLDN 142
>gi|224024589|ref|ZP_03642955.1| hypothetical protein BACCOPRO_01315 [Bacteroides coprophilus DSM
18228]
gi|224017811|gb|EEF75823.1| hypothetical protein BACCOPRO_01315 [Bacteroides coprophilus DSM
18228]
Length = 230
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAP 77
+R R++ + G AL+ E+L +++ + + +L +L +
Sbjct: 11 WAKEDRPREKMMLHGPGALSNAELLAILIGSGNTEDSAVELMRKVLDDCRNSLSELGKRS 70
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L IG A+ + S +R S + + Q +
Sbjct: 71 VDDLCAYKGIGPAKAITILAASELGKRRKDEGPSERLRVRCSQDIFLYFHPLMCDLPVEE 130
Query: 138 FAYCFSI 144
Sbjct: 131 CWVMLLN 137
>gi|206901273|ref|YP_002250597.1| DNA repair protein [Dictyoglomus thermophilum H-6-12]
gi|206740376|gb|ACI19434.1| DNA repair protein [Dictyoglomus thermophilum H-6-12]
Length = 228
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 1/134 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K + R R+R L GE AL+ E+L +IL + +A+ L+ F +L
Sbjct: 2 KKRKIKDFPTSERPRERLLNYGEKALSDVELLAIILRTGDKKYSVYELAQNLIIDFGSLR 61
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIK-KFLTPGQPCLISVERHY 130
+ + L + IG A+++K +RI S + ++ + +
Sbjct: 62 RIAEVGIGELIKYPGIGVTKAIQIKASIELGRRIFSEKKSYFGESISNPYDAFLIFKEDM 121
Query: 131 PMKNANNFAYCFSI 144
+ +
Sbjct: 122 FDLKEEHLFCIYMD 135
>gi|325860385|ref|ZP_08173497.1| DNA repair protein RadC [Prevotella denticola CRIS 18C-A]
gi|327312589|ref|YP_004328026.1| DNA repair protein RadC [Prevotella denticola F0289]
gi|325482043|gb|EGC85064.1| DNA repair protein RadC [Prevotella denticola CRIS 18C-A]
gi|326945677|gb|AEA21562.1| DNA repair protein RadC [Prevotella denticola F0289]
Length = 232
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 1/125 (0%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGA 76
+ +R R++ + G AL+ E+L +++ + ++ K +L +
Sbjct: 12 HWAEADRPREKLERLGAGALSDAELLAILIGSGTAEESAVALMKRVLNDCGNNLNTLGKL 71
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
PL L + IG A+ + +R KA LT + +
Sbjct: 72 PLRDLIQYKGIGPAKAITILAACELGKRRQKAGVEEAPMLTNAAKIYHFMHTTIQDLDIE 131
Query: 137 NFAYC 141
Sbjct: 132 EGWML 136
>gi|167771605|ref|ZP_02443658.1| hypothetical protein ANACOL_02977 [Anaerotruncus colihominis DSM
17241]
gi|167666245|gb|EDS10375.1| hypothetical protein ANACOL_02977 [Anaerotruncus colihominis DSM
17241]
Length = 230
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 62/128 (48%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH RL++RFL++G + + +LEL+LF +P++DT +A L+ RF +L VF A
Sbjct: 5 HEGHRQRLKERFLREGLDHFEPHTVLELLLFYAVPQRDTNELAHRLIARFGSLDAVFDAA 64
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L + IG+ A LKLV ++R L + + LT Q + + +
Sbjct: 65 FDELCAVEGIGRNTATLLKLVPDLTRRYLDSADHEQVLLTSVQAIGDFLRPKFLGRTKEM 124
Query: 138 FAYCFSIN 145
N
Sbjct: 125 VFLLCLNN 132
>gi|284049159|ref|YP_003399498.1| DNA repair protein RadC [Acidaminococcus fermentans DSM 20731]
gi|283953380|gb|ADB48183.1| DNA repair protein RadC [Acidaminococcus fermentans DSM 20731]
Length = 220
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFG-APLHLL 81
R R+R L KG AL E+L +++ IA+ L + + L
Sbjct: 5 ERPRERLLAKGPEALTITELLAILIGTGRKDHSALDIARELTGDLLKDARLARTQDVREL 64
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I+ IG A + +R+ A + + + + V +N +F
Sbjct: 65 TRISGIGPAKATVILAALELGRRLAGAGTRPFRTIHCPEDGAMLVMPRLRYENHEHFLVV 124
Query: 142 FSI 144
Sbjct: 125 LLN 127
>gi|291288346|ref|YP_003505162.1| DNA repair protein RadC [Denitrovibrio acetiphilus DSM 12809]
gi|290885506|gb|ADD69206.1| DNA repair protein RadC [Denitrovibrio acetiphilus DSM 12809]
Length = 221
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
Y GH NRL+ RF ++ +L YE+LEL+L ++ +D K AK LL+R +L +
Sbjct: 2 KEHYHGHRNRLKKRFSKE-PESLYDYEVLELLLGYVLRGRDVKPQAKELLERAGSLSAIL 60
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLISVERHYPMK 133
G + I +G+ + + R+ + + + ++
Sbjct: 61 GYDT---KNIKGLGEEAQMFFGAIREFFARLGYEDIDREAVIIDKPEKAAQFLKYKIAYD 117
Query: 134 NANNFAYCFSI 144
+F F
Sbjct: 118 KKEHFVALFLD 128
>gi|307297496|ref|ZP_07577302.1| DNA repair protein RadC [Thermotogales bacterium mesG1.Ag.4.2]
gi|306916756|gb|EFN47138.1| DNA repair protein RadC [Thermotogales bacterium mesG1.Ag.4.2]
Length = 226
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 2/121 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L KG AL+ E++ ++L I KD +++ LL + +L + A ++ L
Sbjct: 7 PREKLLDKGAGALSNSELIAILLRTGIKGKDVLQLSEELLGYYGSLTALLSAEVNELLNT 66
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFS 143
+GK A+ LK QRI + K L + +
Sbjct: 67 KGLGKAKAVCLKAALELGQRIFREMTEKTKVRLDEPEGVYHLCH-DMAFMDRETVRVISL 125
Query: 144 I 144
Sbjct: 126 D 126
>gi|327469997|gb|EGF15461.1| DNA repair protein RadC [Streptococcus sanguinis SK330]
Length = 227
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G L+ E+L + L ++ +++ +L ++L + L LQ I
Sbjct: 14 PRERLMREGAEKLSNQELLSIFLRTGNKKESVFQVSQRILSSISSLNDLKYLTLQELQTI 73
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG A+EL+ + +RI +A K+ + Q +++ +
Sbjct: 74 SGIGPIKAVELQAIIELGRRINRAEVLQKEQIMGSQKLAQKMQQELGDMRQECLVAIYLN 133
>gi|290969098|ref|ZP_06560628.1| putative DNA repair protein RadC [Megasphaera genomosp. type_1 str.
28L]
gi|290780858|gb|EFD93456.1| putative DNA repair protein RadC [Megasphaera genomosp. type_1 str.
28L]
Length = 229
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 3/122 (2%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA--TLGGVFGAPLHLLQ 82
R++F++ G + ++L ++L +A A+L++ + + + + L
Sbjct: 14 PREKFVRHGTAGVTERDLLAILLRTGTRGLSVLELADAVLRQLPQENIYYLGESSVADLC 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIK-KFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG+ A+ L +RI K + + Q V FA
Sbjct: 74 RIRGIGQDKAITLCAAVELGRRIAKQRVKQQAPDFSTPQAIAEYVMEDMRTALQERFAVV 133
Query: 142 FS 143
F
Sbjct: 134 FL 135
>gi|313903989|ref|ZP_07837369.1| DNA repair protein RadC [Eubacterium cellulosolvens 6]
gi|313471138|gb|EFR66460.1| DNA repair protein RadC [Eubacterium cellulosolvens 6]
Length = 236
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA---TLGGVFGAPLH 79
R +R +++G L+ E+L ++L +A +L + G+ L
Sbjct: 15 ERPYERCIRQGPQHLSDTELLAVLLRTGRQNCSALELADEILHLCPFESGVTGLLHLNLQ 74
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L+E+ IG A+++ + S+RI K + + +
Sbjct: 75 QLREVRGIGDVKAVQILCLGELSRRISKREVRRRICFSAPSGVAEYYVESLRYEEQEVVC 134
Query: 140 YCFSI 144
Sbjct: 135 AVMLD 139
>gi|225010502|ref|ZP_03700973.1| DNA repair protein RadC [Flavobacteria bacterium MS024-3C]
gi|225005331|gb|EEG43282.1| DNA repair protein RadC [Flavobacteria bacterium MS024-3C]
Length = 231
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
++ R+++L+ G L E+L ++L + S+AK LL L +F + L
Sbjct: 16 DQPREKYLRLGGQKLTDAELLAIVLGNGSVGQSALSLAKTLLIACDNDLQKLFELSIEKL 75
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ +GK A+++K R+L N ++ L+ ++ F
Sbjct: 76 MDFKGVGKVKAIKIKASLDFGYRLLHVNATVPLSLSSSGAAFSILKPVLIGLTYEEFWVL 135
Query: 142 FSIN 145
+ N
Sbjct: 136 YLDN 139
>gi|315222705|ref|ZP_07864594.1| DNA repair protein RadC [Streptococcus anginosus F0211]
gi|319938952|ref|ZP_08013316.1| hypothetical protein HMPREF9459_00303 [Streptococcus anginosus
1_2_62CV]
gi|315188391|gb|EFU22117.1| DNA repair protein RadC [Streptococcus anginosus F0211]
gi|319812002|gb|EFW08268.1| hypothetical protein HMPREF9459_00303 [Streptococcus anginosus
1_2_62CV]
Length = 226
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 54/120 (45%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + +G L+ E+L +++ ++ +++ +L ++L + L LQ I
Sbjct: 13 PRERLVAEGAEQLSNQELLSILIRTGNKKETVFQVSQRILSTISSLNDLRNMTLQELQSI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + QR+ KA ++ + Q +++ K + +
Sbjct: 73 SGIGRIKAIELQAMIELGQRVSKAELITQEQILGSQKLAKKMQQELGHKKQEHLVALYLN 132
>gi|162447226|ref|YP_001620358.1| DNA repair protein [Acholeplasma laidlawii PG-8A]
gi|161985333|gb|ABX80982.1| DNA repair protein [Acholeplasma laidlawii PG-8A]
Length = 217
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 43/122 (35%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R++ +Q G AL YE++ ++L ++D +AK +L + + + L
Sbjct: 1 MKPREKLIQHGVRALEDYELIAILLRTGNTKEDVLLLAKKVLSQLDNFEDMLHITVEDLL 60
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I I A + +R+ ++K +T ++ +
Sbjct: 61 TIYGISDAKATTIIAAVELGRRLSDRKKPVRKMITESSEVYHLLKEDMSYLRKEHLIVLC 120
Query: 143 SI 144
Sbjct: 121 LD 122
>gi|171057386|ref|YP_001789735.1| DNA repair protein RadC [Leptothrix cholodnii SP-6]
gi|238689101|sp|B1Y0I9|Y695_LEPCP RecName: Full=UPF0758 protein Lcho_0695
gi|170774831|gb|ACB32970.1| DNA repair protein RadC [Leptothrix cholodnii SP-6]
Length = 222
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 49/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L G ALA E+L L+L + +A LL +F +GG+ A L+
Sbjct: 8 MRPREKLLALGPAALADAELLALLLRTGLKGTGVLQLAGQLLAQFGGIGGLLQADPAGLK 67
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G EL+ V ++R + + + + Q + + FA F
Sbjct: 68 TVKGLGPAKRSELQAVLELARRAIVSQLAQRPVFDSPQAVRDYLRLQLGRLDHEVFAVLF 127
Query: 143 SI 144
Sbjct: 128 LD 129
>gi|189499793|ref|YP_001959263.1| DNA repair protein RadC [Chlorobium phaeobacteroides BS1]
gi|238692279|sp|B3EP05|Y831_CHLPB RecName: Full=UPF0758 protein Cphamn1_0831
gi|189495234|gb|ACE03782.1| DNA repair protein RadC [Chlorobium phaeobacteroides BS1]
Length = 223
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + R R+RF+ G ++L+ E+L LI+ RK+ + L+ R L +
Sbjct: 2 RIHDLDPQERPRERFMISGVSSLSSAELLALIIKTGTKRKNILETCQDLIGRNG-LEKLA 60
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
+ LQE + IG A++++ V +R+ + + KK + + P ++
Sbjct: 61 DLSMRELQETDGIGPAKAMQIQAVFELQKRLHFSRNTNKKV-RSARDVFDYMYGRVPDES 119
Query: 135 ANNFAYCFSI 144
+
Sbjct: 120 KEHLFVLHLN 129
>gi|324991114|gb|EGC23048.1| DNA repair protein RadC [Streptococcus sanguinis SK353]
gi|324994499|gb|EGC26412.1| DNA repair protein RadC [Streptococcus sanguinis SK678]
Length = 227
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G L+ E+L + L ++ +++ +L ++L + L LQ I
Sbjct: 14 PRERLMREGAEKLSNQELLSIFLRTGNKKETVFQVSQRILSSISSLNDLKYLTLQELQTI 73
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG A+EL+ + +RI +A K+ + Q +++ K +
Sbjct: 74 SGIGPIKAVELQAIIELGRRINRAEVLQKEQIMGSQKLAQKMQQELGDKRQECLVAIYLN 133
>gi|322385574|ref|ZP_08059218.1| DNA repair protein RadC [Streptococcus cristatus ATCC 51100]
gi|321270312|gb|EFX53228.1| DNA repair protein RadC [Streptococcus cristatus ATCC 51100]
Length = 227
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G + L+ E+L + L ++ +++ +L ++L + L LQ I
Sbjct: 14 PRERLIREGADKLSNQELLSIFLRTGSKKETVFQVSQRILSSISSLNDLKYLTLQELQTI 73
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG A+EL+ + RI KA ++ + Q ++ K +
Sbjct: 74 SGIGPVKAVELQAIIELGCRINKAEVLEREQIFGSQKLARKMQVELGDKKQECLVAIYLN 133
>gi|171779331|ref|ZP_02920295.1| hypothetical protein STRINF_01176 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281948|gb|EDT47379.1| hypothetical protein STRINF_01176 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 226
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 48/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G L+ E+L ++L + +A +LK TL L LQ+I
Sbjct: 13 PRERLRDLGAEQLSNQELLSILLRTGTKTRPVLEVANDILKHIDTLADFQHLSLQELQKI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG ++E+K + ++RI KA + K+ + + + + + +
Sbjct: 73 KGIGYVKSIEIKAMIELAKRISKAEYVQKERIMSSERLARKMMLELSNQKQEHLVAIYLD 132
>gi|325978185|ref|YP_004287901.1| DNA repair protein radC [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|325178113|emb|CBZ48157.1| DNA repair protein radC [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 226
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 48/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G L+ E+L ++L +A +LK +L L LQ+I
Sbjct: 13 PRERLRDLGAEHLSNQELLSILLRTGTKTTPVLEVANQILKNLDSLADFQHLSLQELQKI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG ++E+K + ++RI KA + K+ + + + + + +
Sbjct: 73 NGIGYVKSIEIKAMIELAKRISKAEYVQKERIMSSERLARKMMLELSDQKQEHLVAIYLD 132
>gi|306831281|ref|ZP_07464441.1| DNA repair protein RadC [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304426517|gb|EFM29629.1| DNA repair protein RadC [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 232
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 48/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G L+ E+L ++L +A +LK +L L LQ+I
Sbjct: 19 PRERLRDLGAEHLSNQELLSILLRTGTKTTPVLEVANQILKNLDSLADFQHLSLQELQKI 78
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG ++E+K + ++RI KA + K+ + + + + + +
Sbjct: 79 NGIGYVKSIEIKAMIELAKRISKAEYVQKERIMSSERLARKMMLELSDQKQEHLVAIYLD 138
>gi|313677180|ref|YP_004055176.1| DNA replication and repair protein radc [Marivirga tractuosa DSM
4126]
gi|312943878|gb|ADR23068.1| DNA replication and repair protein RadC [Marivirga tractuosa DSM
4126]
Length = 234
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAP 77
+R R++ L G + L+ E++ +++ + K +L L +
Sbjct: 15 WAEADRPREKLLNHGRSVLSDAELIAILIGSGTQSLSAIDVGKNILSEVSNDLNHLAKFS 74
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L + IG+ A+ + +R ++ K + Q ++ +
Sbjct: 75 VKELMKFRGIGQAKAVSIIAALELGRRRKESAVQEKPKIVASQDAFDLLKSVLLDLHHEE 134
Query: 138 FAYCFSI 144
F
Sbjct: 135 FWVIMMN 141
>gi|288905210|ref|YP_003430432.1| Putaitve DNA repair protein (RadC) [Streptococcus gallolyticus
UCN34]
gi|288731936|emb|CBI13501.1| Putaitve DNA repair protein (RadC) [Streptococcus gallolyticus
UCN34]
Length = 226
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 48/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G L+ E+L ++L +A +LK +L L LQ+I
Sbjct: 13 PRERLRDLGAEHLSNQELLSILLRTGTKTTPVLEVANQILKNLDSLADFQHLSLQELQQI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG ++E+K + ++RI KA + K+ + + + + + +
Sbjct: 73 NGIGYVKSIEIKAMIELAKRISKAEYVQKERIMSSERLARKMMLELSDQKQEHLVAIYLD 132
>gi|225572122|ref|ZP_03780986.1| hypothetical protein RUMHYD_00416 [Blautia hydrogenotrophica DSM
10507]
gi|225040388|gb|EEG50634.1| hypothetical protein RUMHYD_00416 [Blautia hydrogenotrophica DSM
10507]
Length = 228
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 4/132 (3%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR----FATLGG 72
I R ++ + G L+ E+L +IL + +A +LK + L G
Sbjct: 3 KEIPREERPYEKCQRLGPKGLSDSELLAVILRSGTSGVNCLEMASQVLKLAQPPYEGLLG 62
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
++ L L EI IG ++L+ + S R+ T + +
Sbjct: 63 IYHLSLKELMEIPGIGAVKGIQLQCIGELSVRLAAMQAKESLVFTRPETVARYYMERFRH 122
Query: 133 KNANNFAYCFSI 144
+ N
Sbjct: 123 EEQENLLCVMLN 134
>gi|282889987|ref|ZP_06298522.1| hypothetical protein pah_c008o090 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500180|gb|EFB42464.1| hypothetical protein pah_c008o090 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 238
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 50/122 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R LQ G + L+ E++ ++L + +++ ++ RF +L + A + L
Sbjct: 17 ERPRERLLQHGADVLSSVELIAVLLGSGMKGMPILQLSQEIMSRFGSLQNLADATIEELC 76
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I +G A++LK +R+ + S K + V+ +F
Sbjct: 77 QIKGLGTAKAIQLKAALNLGKRLSRTQVSAKFQIRTPLHAYHLVKDDLEKAMQEHFLTIL 136
Query: 143 SI 144
Sbjct: 137 QD 138
>gi|325694464|gb|EGD36373.1| DNA repair protein RadC [Streptococcus sanguinis SK150]
Length = 227
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G L+ E+L + L ++ +++ +L ++L + L LQ I
Sbjct: 14 PRERLMREGAEKLSNQELLSIFLRTGNKKETVFQVSQRILSSISSLNDLKYLTLQELQTI 73
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG A+EL+ + +RI +A K+ + Q +++ +
Sbjct: 74 SGIGPIKAVELQAIIELGRRINRAEVLQKEQIMGSQKLAQKMQQELGDMRQECLVAIYLN 133
>gi|260911031|ref|ZP_05917667.1| DNA repair protein RadC [Prevotella sp. oral taxon 472 str. F0295]
gi|260634835|gb|EEX52889.1| DNA repair protein RadC [Prevotella sp. oral taxon 472 str. F0295]
Length = 230
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 38/127 (29%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAP 77
+R R++ + G L E+L +++ + + K +L +L +
Sbjct: 6 WAEEDRPREKMARIGAENLTNAELLAILIGSGSVNETAVDLMKRMLNDCGNSLKSLGRRS 65
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L IG+ A+ + +R + ++ L + +
Sbjct: 66 FNELMAYRGIGEAKAITIMAACELGKRRQQEQAEERQDLGSATAIYNFMHARMQDLDVEE 125
Query: 138 FAYCFSI 144
Sbjct: 126 AWALLMN 132
>gi|209542393|ref|YP_002274622.1| DNA repair protein RadC [Gluconacetobacter diazotrophicus PAl 5]
gi|209530070|gb|ACI50007.1| DNA repair protein RadC [Gluconacetobacter diazotrophicus PAl 5]
Length = 244
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 9 APSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA 68
AP K++ GH R+R R L G +LA YEI+E++LF +PR+DTK +AKALL RF
Sbjct: 16 APFKETGP--TGHRARMRARVLASGAGSLADYEIIEMLLFSGVPRRDTKPMAKALLNRFG 73
Query: 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
+LG + AP L+ + RVAL L L + ++R+ + + + + L +
Sbjct: 74 SLGALLSAPADALRAA-GLSDRVALPLMLPASVAERLSRPDPLTRTPMRDWDAVLAYCDT 132
Query: 129 HYPMKNANNFAYCFSI 144
F
Sbjct: 133 VLTGAPPGQLRILFLD 148
>gi|224540956|ref|ZP_03681495.1| hypothetical protein CATMIT_00107 [Catenibacterium mitsuokai DSM
15897]
gi|224526107|gb|EEF95212.1| hypothetical protein CATMIT_00107 [Catenibacterium mitsuokai DSM
15897]
Length = 226
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 1/121 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G +L E+L L+L + ++ +L+ + G L
Sbjct: 11 PREKALLNGIESLTDEELLALLLRTGNKEQSVLDLSSTILREIHGMNGFHTITFAKLLSF 70
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
I K A+ + S+RI + +E + +F
Sbjct: 71 KGINKAKAIGIMAALEFSKRINIHTNIN-EVYDNPTKVFYHLETKMSHLSQEHFLIMILD 129
Query: 145 N 145
N
Sbjct: 130 N 130
>gi|119357558|ref|YP_912202.1| DNA repair protein RadC [Chlorobium phaeobacteroides DSM 266]
gi|229485547|sp|A1BHA1|Y1761_CHLPD RecName: Full=UPF0758 protein Cpha266_1761
gi|119354907|gb|ABL65778.1| DNA replication and repair protein RadC [Chlorobium
phaeobacteroides DSM 266]
Length = 223
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + NR R+RFL+ G +L+ E+L L+L + AL+ RF L +
Sbjct: 2 RIHDLDPENRPRERFLRTGPASLSPSELLALVLRSGTRNNNIIDTCNALIARFG-LERLA 60
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
PL LQEI IG+ A+++ V ++RI + +K L + + P
Sbjct: 61 DIPLSELQEIKGIGQAKAMQIIAVFELNKRIHYSRNLQRKVL-SARDVFEYMAGRVPDIT 119
Query: 135 ANNFAYCFSI 144
+
Sbjct: 120 KEHLFVLHLN 129
>gi|306833394|ref|ZP_07466521.1| DNA repair protein RadC [Streptococcus bovis ATCC 700338]
gi|304424164|gb|EFM27303.1| DNA repair protein RadC [Streptococcus bovis ATCC 700338]
Length = 232
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 48/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G L+ E+L ++L +A +LK +L L LQ+I
Sbjct: 19 PRERLRDLGAEHLSNQELLSILLRTGTKATPVLEVANQILKNLDSLADFQHLSLQELQQI 78
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG ++E+K + ++RI KA + K+ + + + + + +
Sbjct: 79 NGIGYVKSIEIKAMIELAKRISKAEYIQKERIMSSERLARKMMLELSDQKQEHLVAIYLD 138
>gi|170289009|ref|YP_001739247.1| DNA repair protein RadC [Thermotoga sp. RQ2]
gi|170176512|gb|ACB09564.1| DNA repair protein RadC [Thermotoga sp. RQ2]
Length = 215
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 5/127 (3%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLLQE 83
R+R ++ G +L+ E++ ++L K ++K LL+RF +L + A L +
Sbjct: 3 PRERMIKAGPESLSVEELVAIVLRTGKKGKHVLELSKDLLERFDGSLIKLSNASLEEIAS 62
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G A+ LK +R+ + I + L +
Sbjct: 63 VEGVGMVKAITLKAALELGKRLHRELERIPEKLDSSVKVYKYCQ-EMVYLEREIVKVICL 121
Query: 144 I---NII 147
N+I
Sbjct: 122 DTKLNVI 128
>gi|162147771|ref|YP_001602232.1| putative DNA repair protein radC [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786348|emb|CAP55930.1| putative DNA repair protein radC [Gluconacetobacter diazotrophicus
PAl 5]
Length = 244
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 9 APSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA 68
AP K++ GH R+R R L G +LA YEI+E++LF +PR+DTK +AKALL RF
Sbjct: 16 APFKETGP--TGHRARMRARVLASGAGSLADYEIIEMLLFSGVPRRDTKPMAKALLNRFG 73
Query: 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
+LG + AP L+ + RVAL L L + ++R+ + + + + L +
Sbjct: 74 SLGALLSAPADALRAA-GLSDRVALPLMLPASVAERLSRPDPLTRTPMRDWDAVLAYCDT 132
Query: 129 HYPMKNANNFAYCFSI 144
F
Sbjct: 133 VLTGAPPGQLRILFLD 148
>gi|218778342|ref|YP_002429660.1| DNA repair protein RadC [Desulfatibacillum alkenivorans AK-01]
gi|218759726|gb|ACL02192.1| DNA repair protein RadC [Desulfatibacillum alkenivorans AK-01]
Length = 265
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR+RFLQ G + YE++EL+L PRKD K AKA + F +L V A
Sbjct: 29 GHRGRLRERFLQNGLDGFLDYEVVELLLTLATPRKDCKQQAKAAVDHFGSLKAVLAADKD 88
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKAN---WSIKKFLTPGQPCLISVERHYPMKNAN 136
LQ++ +G L + L+ +++ L++ S+++ ++ + + + K
Sbjct: 89 DLQKVKGLGPANILGILLMRAVAKKHLESEAVLASLQEAVSSSEELYNLLNFQFENKKNE 148
Query: 137 NFAYCFSI 144
F +
Sbjct: 149 CFFIVYLD 156
>gi|25011219|ref|NP_735614.1| DNA repair protein RadC [Streptococcus agalactiae NEM316]
gi|76797900|ref|ZP_00780162.1| DNA repair protein radC-like protein [Streptococcus agalactiae
18RS21]
gi|77408712|ref|ZP_00785444.1| DNA repair protein RadC [Streptococcus agalactiae COH1]
gi|77410546|ref|ZP_00786907.1| DNA repair protein RadC [Streptococcus agalactiae CJB111]
gi|39931967|sp|Q8E564|Y1168_STRA3 RecName: Full=UPF0758 protein gbs1168
gi|23095643|emb|CAD46827.1| Unknown [Streptococcus agalactiae NEM316]
gi|76586737|gb|EAO63233.1| DNA repair protein radC-like protein [Streptococcus agalactiae
18RS21]
gi|77163494|gb|EAO74444.1| DNA repair protein RadC [Streptococcus agalactiae CJB111]
gi|77172687|gb|EAO75824.1| DNA repair protein RadC [Streptococcus agalactiae COH1]
Length = 226
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + G + L+ E+L ++L I K I+ +L+ ++L L LQ I
Sbjct: 13 PRERLVDLGADRLSNQELLAILLRTGIKEKPVLEISTQILENISSLADFGQLSLQELQSI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ ++E+K + ++RI KA + K+ + + + K + +
Sbjct: 73 KGIGQVKSVEIKAMLELAKRIHKAEYDRKEQILSSEQLARKMMLELGDKKQEHLVAIYMD 132
>gi|237734823|ref|ZP_04565304.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229382151|gb|EEO32242.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 225
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 43/122 (35%), Gaps = 1/122 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ G +L E+L L+L ++ +A+ ++ + + L
Sbjct: 10 ERPREKAFHHGIESLNNIELLALVLRTGNKQESAIELAQRIINEIGGFRYLHDINYYQLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I I + A+E+ + ++R+ K + + + ++ +
Sbjct: 70 QIKGIKQAKAIEVLAIIEIAKRLDKQPVA-MSAIKEPRDGYELLKNQLMFEQQEKVIVLC 128
Query: 143 SI 144
Sbjct: 129 LN 130
>gi|114776910|ref|ZP_01451953.1| DNA repair protein RadC [Mariprofundus ferrooxydans PV-1]
gi|114552996|gb|EAU55427.1| DNA repair protein RadC [Mariprofundus ferrooxydans PV-1]
Length = 261
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 65/125 (52%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR RF Q+G + YE+LEL+L I R D K +AK+LL RF TL GVF APL
Sbjct: 44 GHRQRLRQRFSQRGFDGFHDYEVLELLLTYAIARTDVKPLAKSLLTRFGTLAGVFDAPLA 103
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L+E++ IG+ AL L L+ R L ++ ++ L + + + F
Sbjct: 104 ELKEVHGIGEGGALFLTLIRQVEVRYLASDLPGRQLLYRPERVRAYLRLLVQGRGMECFG 163
Query: 140 YCFSI 144
F+
Sbjct: 164 AMFTD 168
>gi|328946264|gb|EGG40408.1| DNA repair protein RadC [Streptococcus sanguinis SK1087]
Length = 227
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G L+ E+L + L ++ +++ +L ++L + L LQ I
Sbjct: 14 PRERLMREGAEKLSNQELLSIFLRTGNKKETVFQVSQRILSSISSLNDLKYLTLQELQTI 73
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG A+EL+ + +RI +A K+ + Q +++ +
Sbjct: 74 SGIGPIKAVELQAIIELGRRINRAEVLQKEQIMGSQKLAQKMQQELGDMRQECLVAIYLN 133
>gi|157150253|ref|YP_001450516.1| DNA repair protein RadC [Streptococcus gordonii str. Challis
substr. CH1]
gi|229485564|sp|A8AXK6|Y1229_STRGC RecName: Full=UPF0758 protein SGO_1229
gi|157075047|gb|ABV09730.1| DNA repair protein [Streptococcus gordonii str. Challis substr.
CH1]
Length = 226
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G L+ E+L +++ +++ IA +L ++L + L LQ +
Sbjct: 13 PRERLVRLGAEQLSNQELLSILIRTGNKKENVFQIASKILSSVSSLTELRHMTLSELQGM 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + RI KA + + Q +++ K + +
Sbjct: 73 SGIGQVKAIELQAMIELGSRISKAENFEGERILSSQKLAKKMQQELSHKKQEHLVALYLN 132
>gi|13471076|ref|NP_102645.1| DNA repair protein RadC [Mesorhizobium loti MAFF303099]
gi|14021820|dbj|BAB48431.1| DNA repair protein; RadC [Mesorhizobium loti MAFF303099]
Length = 179
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/120 (43%), Positives = 69/120 (57%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
+R+RF G +AL YE+LEL+LFRLIPR DTK AKALL RF TL V GAP++LLQE+
Sbjct: 1 MRERFASAGADALPDYELLELLLFRLIPRADTKPAAKALLARFGTLAEVLGAPVNLLQEV 60
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG VAL+LK+V+ +QR+ ++ L+ L + F F
Sbjct: 61 KGIGPAVALDLKVVAATAQRMAHGEVHGREVLSSWTQLLAYCRSAMAFEAREQFRILFLD 120
>gi|324992861|gb|EGC24781.1| DNA repair protein RadC [Streptococcus sanguinis SK405]
gi|325687499|gb|EGD29520.1| DNA repair protein RadC [Streptococcus sanguinis SK72]
gi|325696545|gb|EGD38435.1| DNA repair protein RadC [Streptococcus sanguinis SK160]
gi|327460312|gb|EGF06649.1| DNA repair protein RadC [Streptococcus sanguinis SK1057]
gi|327462168|gb|EGF08495.1| DNA repair protein RadC [Streptococcus sanguinis SK1]
gi|327474473|gb|EGF19879.1| DNA repair protein RadC [Streptococcus sanguinis SK408]
Length = 227
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G L+ E+L + L ++ +++ +L ++L + L LQ I
Sbjct: 14 PRERLMREGAEKLSNQELLSIFLRTGNKKETVFQVSQRILSSISSLNDLKYLTLQELQTI 73
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG A+EL+ + +RI +A K+ + Q +++ +
Sbjct: 74 SGIGPIKAVELQAIIELGRRINRAEVLQKEQIMGSQKLAQKMQQELGDMRQECLVAIYLN 133
>gi|22537259|ref|NP_688110.1| DNA repair protein RadC [Streptococcus agalactiae 2603V/R]
gi|76788041|ref|YP_329807.1| DNA repair protein RadC [Streptococcus agalactiae A909]
gi|77413024|ref|ZP_00789226.1| DNA repair protein RadC [Streptococcus agalactiae 515]
gi|39931963|sp|Q8DZK0|Y1101_STRA5 RecName: Full=UPF0758 protein SAG1101
gi|123601762|sp|Q3K0Z6|Y1186_STRA1 RecName: Full=UPF0758 protein SAK_1186
gi|22534127|gb|AAM99982.1|AE014242_11 DNA repair protein RadC [Streptococcus agalactiae 2603V/R]
gi|76563098|gb|ABA45682.1| DNA repair protein RadC [Streptococcus agalactiae A909]
gi|77160922|gb|EAO72031.1| DNA repair protein RadC [Streptococcus agalactiae 515]
gi|319745114|gb|EFV97439.1| DNA repair protein RadC [Streptococcus agalactiae ATCC 13813]
Length = 226
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + G + L+ E+L ++L I K I+ +L+ ++L L LQ I
Sbjct: 13 PRERLVDLGADRLSNQELLAILLRTGIKEKPVLEISTQILENISSLADFGQLSLQELQSI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ ++E+K + ++RI KA + K+ + + + K + +
Sbjct: 73 KGIGQVKSVEIKAMLELAKRIHKAEYDRKEQILSSEQLARKMMLELGDKKQEHLVAIYMD 132
>gi|325268666|ref|ZP_08135296.1| DNA repair protein RadC [Prevotella multiformis DSM 16608]
gi|324989194|gb|EGC21147.1| DNA repair protein RadC [Prevotella multiformis DSM 16608]
Length = 232
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 1/125 (0%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGA 76
+ +R R++ + G AL+ E+L +++ + + K +L L +
Sbjct: 12 HWAEADRPREKLERLGAAALSDAELLAILIGSGTADESAVDLMKRILNDCKNNLNTLGKL 71
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L IG A+ L +R A L + + +
Sbjct: 72 SIRDLTTYKGIGPAKAISLLAACELGKRRQNAAAEKAPLLDNAKKVYQFMHTKIQDLDIE 131
Query: 137 NFAYC 141
Sbjct: 132 EGWML 136
>gi|325849901|ref|ZP_08170940.1| DNA repair protein RadC [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325479925|gb|EGC83008.1| DNA repair protein RadC [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 226
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 48/129 (37%), Gaps = 6/129 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ +G + L+ E+L +++ +K+ +++ + +F + + + L
Sbjct: 12 QRPREKLKNEGFDCLSDEELLAILIGTGSKKKNAIELSREIFSKF-STDELLSISIEELS 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANW--SIKKFLTPGQPCLISVERHYPMKNANNFAY 140
++ I A ++ +R L K +T ++ + +F
Sbjct: 71 TVDGIKLAKASKIVASIQLGKR-LSEKMANKKIKQITSCDDVYNLMKNKFLDTKKEHFYA 129
Query: 141 CFSI--NII 147
N+I
Sbjct: 130 ILLDTKNVI 138
>gi|313889365|ref|ZP_07823013.1| DNA repair protein RadC [Streptococcus pseudoporcinus SPIN 20026]
gi|313122197|gb|EFR45288.1| DNA repair protein RadC [Streptococcus pseudoporcinus SPIN 20026]
Length = 228
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ ++ G L+ E+L +IL K +A LL ++L L L+++
Sbjct: 13 PREKLVRNGAEQLSNQELLAIILRTGNKDKHVMELAATLLNTVSSLSDFKKMSLQELRQL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG ++ELK + ++RI ++ + + + + + K + +
Sbjct: 73 VGIGNVKSIELKAMLEFARRIQESEQTSQYQILSSFQIAKKMIKQLGDKEQEHLVALYLD 132
>gi|288929818|ref|ZP_06423661.1| DNA repair protein RadC [Prevotella sp. oral taxon 317 str. F0108]
gi|288328919|gb|EFC67507.1| DNA repair protein RadC [Prevotella sp. oral taxon 317 str. F0108]
Length = 226
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 39/127 (30%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAP 77
+ +R R++ + G L E+L +++ + + K +L +L +
Sbjct: 6 LAEEDRPREKMARIGAENLTNSELLAILIGSGSVNESAVDLMKRMLNDCGNSLKRLGRLS 65
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L IG+ A+ + +R + ++ L + +
Sbjct: 66 FNELMNYRGIGEAKAVTIMAACELGKRRQQEQAEERQDLGSATAIYNFMHARMQDLDVEE 125
Query: 138 FAYCFSI 144
Sbjct: 126 AWALLMN 132
>gi|256544878|ref|ZP_05472249.1| DNA repair protein RadC [Anaerococcus vaginalis ATCC 51170]
gi|256399377|gb|EEU12983.1| DNA repair protein RadC [Anaerococcus vaginalis ATCC 51170]
Length = 226
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 49/128 (38%), Gaps = 4/128 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ +G +L+ E+L +++ +K+ +A+ +L F++ + + L
Sbjct: 12 QRPREKLKNEGYASLSDEELLAILIETGSKKKNAIELAREILNTFSS-EELLSISIEQLN 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I+ I A ++ +R+ + + + ++ + +F
Sbjct: 71 GIDGIKLAKASKIIAAIQLGKRLTEKIVNKEITSINSCEDVFNLMKNKFIDTKKEHFYAI 130
Query: 142 FSI--NII 147
N+I
Sbjct: 131 LLDTKNVI 138
>gi|290580506|ref|YP_003484898.1| putative DNA repair protein [Streptococcus mutans NN2025]
gi|254997405|dbj|BAH88006.1| putative DNA repair protein [Streptococcus mutans NN2025]
Length = 226
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 53/120 (44%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + G +L+ E+L ++L ++ +++ +L +L L LQEI
Sbjct: 13 PRERLMTYGPESLSNQELLAILLRTGTKKEHVLNLSIKILNGLDSLADFRSLSLEELQEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ ++E+K + S+RI +A ++ K+ + + + K + +
Sbjct: 73 EGIGQVRSVEIKAMLELSKRINQAEYNFKERILSSERLAKIMMSELGDKRQEHLIAIYLD 132
>gi|113476272|ref|YP_722333.1| DNA repair protein RadC [Trichodesmium erythraeum IMS101]
gi|123160702|sp|Q111G4|Y2667_TRIEI RecName: Full=UPF0758 protein Tery_2667
gi|110167320|gb|ABG51860.1| DNA repair protein RadC [Trichodesmium erythraeum IMS101]
Length = 243
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 44/129 (34%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALL-----KRFATLGGVFG 75
R R+R + G +L+ E++ ++L K + + +L L +
Sbjct: 14 ERPRERLIACGSQSLSTAELIAILLGTGQGKGKLSAVGLGQYILNQLSQYERDPLSILRN 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L +I+ IG A + +R+ ++ + Q ++ + +
Sbjct: 74 ITVQELTQIHGIGTAKATTILAAIELGKRVFQSRPPELAVVESPQAAADALSQDLMWQTQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 EKFAVLLLD 142
>gi|254515838|ref|ZP_05127898.1| DNA repair protein RadC family [gamma proteobacterium NOR5-3]
gi|219675560|gb|EED31926.1| DNA repair protein RadC family [gamma proteobacterium NOR5-3]
Length = 224
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 46/119 (38%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
RD+ L +G +L+ E+L L+L R + A +LLKR L G+ A L
Sbjct: 13 RDKLLVRGPGSLSDAELLGLLLPRWSSGQCLTQHAASLLKRADGLAGLLAADQRELLAQP 72
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G L ++R + + + ++ + ++ H + F F
Sbjct: 73 GLGPATVSRLLAALELARRCAQQPLTQRDVMSSPERTRRFLQHHLGTRPREVFCCLFLD 131
>gi|125718039|ref|YP_001035172.1| DNA repair protein RadC [Streptococcus sanguinis SK36]
gi|229485572|sp|A3CN67|Y1218_STRSV RecName: Full=UPF0758 protein SSA_1218
gi|125497956|gb|ABN44622.1| DNA repair protein radC, putative [Streptococcus sanguinis SK36]
Length = 227
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G L+ E+L + L ++ +++ +L ++L + L LQ I
Sbjct: 14 PRERLMREGAEKLSNQELLSIFLRTGNKKETVFQVSQRILSSISSLNDLKYLTLQELQTI 73
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG A+EL+ + +RI +A K+ + Q +++ +
Sbjct: 74 SGIGPIKAVELQAIIELGRRINRAEVLQKEQIMGSQKLARKMQQELGDMRQECLVAIYLN 133
>gi|262039133|ref|ZP_06012461.1| DNA repair protein RadC [Leptotrichia goodfellowii F0264]
gi|261746842|gb|EEY34353.1| DNA repair protein RadC [Leptotrichia goodfellowii F0264]
Length = 224
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR RFL G + YE+LEL+L +I R+D K IAK LL ++ L +
Sbjct: 6 GHRERLRKRFLMSGISGFHDYEVLELLLSYVIVRRDCKKIAKDLLNKYGDLYSLLKQSKD 65
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWS-IKKFLTPGQPCLISVERHYPMKNANNF 138
L+ + I +R+A+ LK++ + L + ++ L +E ++ F
Sbjct: 66 ELETNSFITERIAIFLKVLFSMLEDQLYRKIHNERIVISSNVQLLDYLEFSLLKRDIEIF 125
Query: 139 AYCFSI 144
F
Sbjct: 126 KVLFLN 131
>gi|15644305|ref|NP_229357.1| DNA repair protein RadC [Thermotoga maritima MSB8]
gi|6685843|sp|Q9X1P3|Y1557_THEMA RecName: Full=UPF0758 protein TM_1557
gi|4982124|gb|AAD36623.1|AE001801_10 DNA repair protein [Thermotoga maritima MSB8]
Length = 222
Score = 99.3 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 5/127 (3%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLLQE 83
R+R ++ G +L+ E++ ++L K ++K LL+RF +L + A L +
Sbjct: 10 PRERMIKAGPESLSVEELVAIVLRTGKKGKHVLELSKDLLERFDGSLIKLSNASLEEIAS 69
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G A+ LK +R+ + I + L +
Sbjct: 70 VEGVGMVKAITLKAALELGKRLHRELERIPEKLDSSVKVYKYCQ-EMVYLEREIVKVICL 128
Query: 144 I---NII 147
N+I
Sbjct: 129 DTKLNVI 135
>gi|223984388|ref|ZP_03634527.1| hypothetical protein HOLDEFILI_01821 [Holdemania filiformis DSM
12042]
gi|223963630|gb|EEF68003.1| hypothetical protein HOLDEFILI_01821 [Holdemania filiformis DSM
12042]
Length = 228
Score = 99.3 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 48/122 (39%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L +G + EIL LIL +P + IA LL+R + G+ L L
Sbjct: 13 ERPREKALHQGIEHCSNKEILALILRSGVPGASSLMIADQLLQRSQGVRGLSRLTLKELM 72
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I I + LE+ ++RI + + + + R K +F +
Sbjct: 73 QIKGISQVRGLEILACFELARRISEEQTREIDVVANPDALMAWLGREIGGKQQEHFLAIY 132
Query: 143 SI 144
Sbjct: 133 LD 134
>gi|225870498|ref|YP_002746445.1| DNA repair protein RadC [Streptococcus equi subsp. equi 4047]
gi|254789660|sp|C0MA71|Y1136_STRE4 RecName: Full=UPF0758 protein SEQ_1136
gi|225699902|emb|CAW93813.1| DNA repair protein RadC [Streptococcus equi subsp. equi 4047]
Length = 225
Score = 99.3 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 47/126 (37%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
H R+R ++ G L+ E L ++L K ++ LL +L + L
Sbjct: 6 TDHKLMPRERLIRLGPEKLSNQEQLAILLRTGNKEKHVLELSAYLLSSLDSLADLKKFSL 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
LQ ++ IGK A+E+K + + RI A ++ + + K +
Sbjct: 66 QELQRLSGIGKVKAIEIKAMLELADRIQIAGQAVADPVLSSAQVAEKMMIELGDKQQEHL 125
Query: 139 AYCFSI 144
+
Sbjct: 126 VAIYLD 131
>gi|167765536|ref|ZP_02437600.1| hypothetical protein CLOSS21_00030 [Clostridium sp. SS2/1]
gi|167712721|gb|EDS23300.1| hypothetical protein CLOSS21_00030 [Clostridium sp. SS2/1]
Length = 159
Score = 99.3 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 3/136 (2%)
Query: 5 RMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
+ S K L + R ++ + G L+ E+L +IL + +A +L
Sbjct: 18 KGSDMEEKHQTLKELPVSERPYEKCEKNGTAMLSDAELLAVILRSGTKDQTAIDLATKVL 77
Query: 65 KRFA---TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
+ G+ LQ+I IGK A+++ ++ S+R+ A K
Sbjct: 78 SIDPFYEGILGICHTSREELQKIPGIGKVKAMQILCIAELSKRLASAKVEDKISFHSPAS 137
Query: 122 CLISVERHYPMKNANN 137
+
Sbjct: 138 IADYYMERMRHLSREE 153
>gi|319779280|ref|YP_004130193.1| DNA repair protein RadC [Taylorella equigenitalis MCE9]
gi|317109304|gb|ADU92050.1| DNA repair protein RadC [Taylorella equigenitalis MCE9]
Length = 227
Score = 99.3 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 44/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R ++ G N L E+L LIL + ++ LLK+F L + A L
Sbjct: 11 EKPRERLIKHGANVLTTAELLALILRSGPKGEPVIEFSQNLLKKFGGLRQLLNAQSEDLH 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ +G +L ++ + R L+ L K+ N +
Sbjct: 71 AVHGLGLAKVTQLLALNEIAIRTLEEPLKEYPILQQASTVKRYCIHAIGNKSEENCLLLY 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|78186481|ref|YP_374524.1| DNA repair protein RadC [Chlorobium luteolum DSM 273]
gi|123583334|sp|Q3B5A0|Y598_PELLD RecName: Full=UPF0758 protein Plut_0598
gi|78166383|gb|ABB23481.1| DNA replication and repair protein RadC [Chlorobium luteolum DSM
273]
Length = 223
Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 2/130 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + NR R+RFL G +AL+ E+L L+L + + ++ L +
Sbjct: 2 RIHDLDPENRPRERFLSSGPSALSSAELLALVLRSGTRHLNIVDTCQRIIAENG-LERLA 60
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
L LQ+ IG+ A+++ + + R+ + ++ + + P +
Sbjct: 61 SMTLGELQKTPGIGQAKAMQIVAIFELNNRLHHTRNTNRRVQG-AKDVFEYMSGRIPDET 119
Query: 135 ANNFAYCFSI 144
+
Sbjct: 120 QEHLFVLHLN 129
>gi|295094836|emb|CBK83927.1| DNA replication and repair protein RadC [Coprococcus sp. ART55/1]
Length = 242
Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG---GVFGAPLH 79
R ++ + G L E+L +IL + + S A +L G+ +
Sbjct: 25 ERPYEKSFKYGVEVLTDAELLAVILRTGSRKANALSTAYRILDAHPVHKGIVGLNYLTVS 84
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L+EI+ +GK A+++K ++ S+R+ +A++ Q +
Sbjct: 85 ELEEISGVGKVKAIQMKCLAEISRRMARASFKPFLSFQSPQSIADYFMENTRYLEKEYVY 144
Query: 140 YCFSI 144
Sbjct: 145 LLMFD 149
>gi|160892638|ref|ZP_02073428.1| hypothetical protein CLOL250_00168 [Clostridium sp. L2-50]
gi|156865679|gb|EDO59110.1| hypothetical protein CLOL250_00168 [Clostridium sp. L2-50]
Length = 232
Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA---TLGGVFGAPLH 79
R ++ L +G L+ E+L +IL + A+ +L + G+ +
Sbjct: 14 ERPYEKCLLEGAAVLSDAELLAVILRCGSRHGNALLTAQKILAAHPVHKGIIGLNYLSVD 73
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L ++ IGK A++++ ++ S+R+ ++ +
Sbjct: 74 DLMNVDGIGKVKAIQMQCIAELSRRMARSEHRSGVTFGNPKSIADYYMERTKYLCKEQVY 133
Query: 140 YCFSI 144
Sbjct: 134 VLMFD 138
>gi|255038888|ref|YP_003089509.1| DNA repair protein RadC [Dyadobacter fermentans DSM 18053]
gi|254951644|gb|ACT96344.1| DNA repair protein RadC [Dyadobacter fermentans DSM 18053]
Length = 234
Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 1/124 (0%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAPLHL 80
++ R++F+ KG A + E++ +++ +AK+++ + +
Sbjct: 18 DDKPREKFMNKGRAACSDAELMAILIRAGTTHMTAVDLAKSIMTSVGNNINELAKLNVRD 77
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L I IG+ AL + +R K+ + QP ++ + K F
Sbjct: 78 LTRIKGIGEAKALTILAALELGRRRSDIVRDKKRKINGSQPVYEAMRPYLMDKTHEEFWI 137
Query: 141 CFSI 144
Sbjct: 138 LLLN 141
>gi|167755855|ref|ZP_02427982.1| hypothetical protein CLORAM_01372 [Clostridium ramosum DSM 1402]
gi|167704794|gb|EDS19373.1| hypothetical protein CLORAM_01372 [Clostridium ramosum DSM 1402]
Length = 225
Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 43/122 (35%), Gaps = 1/122 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ G +L E+L L+L ++ +A+ ++ + + L
Sbjct: 10 ERPREKAFHHGIESLNNIELLALVLRTGNKQESAIELAQRVINEIGGFRYLHDINYYQLI 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I I + A+E+ + ++R+ K + + + ++ +
Sbjct: 70 QIKGIKQAKAIEVLAIIEIAKRLDKQPVA-MSAIKEPRDGYELLKNQLMFEQQEKVIVLC 128
Query: 143 SI 144
Sbjct: 129 LN 130
>gi|326202567|ref|ZP_08192435.1| DNA repair protein RadC [Clostridium papyrosolvens DSM 2782]
gi|325987151|gb|EGD47979.1| DNA repair protein RadC [Clostridium papyrosolvens DSM 2782]
Length = 229
Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 2/124 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK--RFATLGGVFGAPLHL 80
R ++ + G L+ E+L +++ +A+ +LK + L + +
Sbjct: 13 ERPYEKMSEVGAECLSNAELLAIVIKTGTRAYTAVELAQKVLKLSQDGRLSSLNNLSIEQ 72
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L ++ IG+ A+++K V S+RI +N ++ F+ + F
Sbjct: 73 LMKVKGIGRVKAIQIKAVLEFSKRIATSNGVVRHFVKSADDVSNLMMEEMRYLKKEMFKA 132
Query: 141 CFSI 144
Sbjct: 133 ILLD 136
>gi|300814983|ref|ZP_07095210.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300510904|gb|EFK38177.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 169
Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 6/122 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG------VFGA 76
R +++ L G +AL E+L LI+ + + + +L+ + A
Sbjct: 15 ERPQEKLLHLGPSALTNAELLALIIRTGTKELTSVELCEKILRELKRENNSSLLSGLRIA 74
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L I +G+ A + ++R+ ++ +K +T + V
Sbjct: 75 SMDKLTAIKGVGQAKAAMIMAALTLAERLNSSSIYDRKKITSPEDAAKYVMASMRDLETE 134
Query: 137 NF 138
F
Sbjct: 135 VF 136
>gi|295098761|emb|CBK87850.1| hypothetical protein [Eubacterium cylindroides T2-87]
Length = 135
Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ L++G N+L+ E++ LIL + IA+ +L L +F ++ L
Sbjct: 4 DQRPREKALRQGLNSLSDLELIALILQSGSKDRSVFDIAQDVLIETEGLSQLFNMHVNSL 63
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
+I I + AL+L +R+LK N + + Q + + Y
Sbjct: 64 MKIKGIREVKALQLLAGVELCKRVLKTNAYRMQ-IKNSQDVIQWFKVEYGYLTQEILFV 121
>gi|255015794|ref|ZP_05287920.1| putative DNA repair protein [Bacteroides sp. 2_1_7]
gi|262384073|ref|ZP_06077209.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262294971|gb|EEY82903.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 235
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 2/135 (1%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR- 66
K + + +R R++ LQKG + L+ E++ +++ + +++ +L
Sbjct: 2 KEKTGKLSIKEWAEEDRPREKMLQKGASVLSDAELIAILIGSGNNEETAVQLSQRILHSV 61
Query: 67 FATLGGVFGAPLHLLQE-INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
L + + L IG+ A+ + +R + S + + + +
Sbjct: 62 NNNLNTLGKRSIKELTSGFKGIGEAKAVTICAAMELGKRRETSEASPQDAIRSSKDSYLL 121
Query: 126 VERHYPMKNANNFAY 140
Sbjct: 122 FRTQLCDLPYEELWI 136
>gi|301310981|ref|ZP_07216910.1| DNA repair protein RadC [Bacteroides sp. 20_3]
gi|300831044|gb|EFK61685.1| DNA repair protein RadC [Bacteroides sp. 20_3]
Length = 235
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 2/135 (1%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR- 66
K + + +R R++ LQKG + L+ E++ +++ + +++ +L
Sbjct: 2 KEKTGKLSIKEWAEEDRPREKMLQKGASVLSDAELIAILIGSGNNEETAVQLSQRILHSV 61
Query: 67 FATLGGVFGAPLHLLQE-INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
L + + L IG+ A+ + +R + S + + + +
Sbjct: 62 NNNLNTLGKRSIKELTSGFKGIGEAKAVTICAAMELGKRRETSEASPQDAIRSSKDSYLL 121
Query: 126 VERHYPMKNANNFAY 140
Sbjct: 122 FRTQLCDLPYEELWI 136
>gi|83589400|ref|YP_429409.1| DNA repair protein RadC [Moorella thermoacetica ATCC 39073]
gi|123524970|sp|Q2RL23|Y536_MOOTA RecName: Full=UPF0758 protein Moth_0536
gi|83572314|gb|ABC18866.1| DNA replication and repair protein RadC [Moorella thermoacetica
ATCC 39073]
Length = 229
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R L G AL+ E+L ++L + +A+ LL L + GA L LQ+
Sbjct: 17 RPRERLLAAGVQALSNAELLAILLRTGTRTESALDVARRLLSGPDGLQFLAGATLEELQQ 76
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
IG A ELK +R+ S + + + + NF
Sbjct: 77 QKGIGLAKAAELKAALELGRRLAAFTLSR-TVIRNPRDVAGLLLDEMRYLDRENFR 131
>gi|150009187|ref|YP_001303930.1| putative DNA repair protein [Parabacteroides distasonis ATCC 8503]
gi|256841743|ref|ZP_05547249.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298377073|ref|ZP_06987027.1| DNA repair protein RadC [Bacteroides sp. 3_1_19]
gi|149937611|gb|ABR44308.1| putative DNA repair protein [Parabacteroides distasonis ATCC 8503]
gi|256736637|gb|EEU49965.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298266057|gb|EFI07716.1| DNA repair protein RadC [Bacteroides sp. 3_1_19]
Length = 235
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 2/135 (1%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR- 66
K + + +R R++ LQKG + L+ E++ +++ + +++ +L
Sbjct: 2 KEKTGKLSIKEWAEEDRPREKMLQKGASVLSDAELIAILIGSGNNEETAVQLSQRILHSV 61
Query: 67 FATLGGVFGAPLHLLQE-INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
L + + L IG+ A+ + +R + S + + + +
Sbjct: 62 NNNLNTLGKRSIKELTSGFKGIGEAKAVTICAAMELGKRRETSEASPQDAIRSSKDSYLL 121
Query: 126 VERHYPMKNANNFAY 140
Sbjct: 122 FRTQLCDLPYEELWI 136
>gi|46447399|ref|YP_008764.1| putative DNA repair protein radC [Candidatus Protochlamydia
amoebophila UWE25]
gi|81697594|sp|Q6MAB0|Y1765_PARUW RecName: Full=UPF0758 protein pc1765
gi|46401040|emb|CAF24489.1| putative DNA repair protein radC [Candidatus Protochlamydia
amoebophila UWE25]
Length = 231
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 50/126 (39%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
+ R R+R ++ G ++L+ EIL +IL +++AL+ RF L + A L
Sbjct: 11 LPKEERPRERLIRHGADSLSLIEILAIILGSGSKVASVLEVSRALVTRFGGLEALMQATL 70
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L E+ IG A++LK R + + + V+ +N F
Sbjct: 71 TELLEVQGIGFAKAIQLKAALNLGFRATRQQIKSRYLIEHSSHAYQLVKDELENENREIF 130
Query: 139 AYCFSI 144
F
Sbjct: 131 MAIFQD 136
>gi|326801342|ref|YP_004319161.1| DNA repair protein RadC [Sphingobacterium sp. 21]
gi|326552106|gb|ADZ80491.1| DNA repair protein RadC [Sphingobacterium sp. 21]
Length = 233
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 1/140 (0%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M + +K L +R R++ L G L+ E++ +++ + ++K +L
Sbjct: 1 MQETYTKRMRLKQWAEQDRPREKLLLNGRRLLSDAELIAILIGSGSKEETAVELSKRILS 60
Query: 66 R-FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
L + L L IG+ A+ + +R + +K + +
Sbjct: 61 DVENNLSDLARLTLADLCNYKGIGEAKAIAIIAALELGRRRKENASVLKPQIESSEDAYQ 120
Query: 125 SVERHYPMKNANNFAYCFSI 144
++ Y + F
Sbjct: 121 VLQSVYADLSHEEFWILLLN 140
>gi|256420577|ref|YP_003121230.1| DNA repair protein RadC [Chitinophaga pinensis DSM 2588]
gi|256035485|gb|ACU59029.1| DNA repair protein RadC [Chitinophaga pinensis DSM 2588]
Length = 237
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-RFATLGGVFG 75
++ R++ + KG +AL+ E+L ++L +K ++A+ +L+ L +
Sbjct: 15 KDWPEDDQPREKLISKGNSALSDAELLAILLNDGYKQKSALALAQEVLRAASNNLSEMGK 74
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L L++I IG A ++ V ++R KK + G+ + +
Sbjct: 75 LTLEQLKKIQGIGTAKATKIIAVMELARRRQAGCMLQKKTIRQGRDAALYFKPLLGDAAL 134
Query: 136 NNFAYCFSIN 145
+F + +
Sbjct: 135 ESFHVLYLNH 144
>gi|94986594|ref|YP_594527.1| DNA repair proteins [Lawsonia intracellularis PHE/MN1-00]
gi|94730843|emb|CAJ54205.1| DNA repair proteins [Lawsonia intracellularis PHE/MN1-00]
Length = 226
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
+ ++GH RLR R + +A YE+LEL L + RKDTK +AK LL++F ++
Sbjct: 2 PNDKPHHLGHRARLRKRL-CNDPSEMAEYELLELFLGYVHLRKDTKPLAKKLLQQFGSIR 60
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
G A L+ I + G+ ++ KL+ R + K L + + +
Sbjct: 61 GALDAFPGELETIPQFGEALSAFWKLIREIFARYAETPVREKIQLCTPKIVAEIAKARFT 120
Query: 132 MKNANNFAY 140
Sbjct: 121 GCPHEEVWI 129
>gi|145219983|ref|YP_001130692.1| DNA repair protein RadC [Prosthecochloris vibrioformis DSM 265]
gi|238685550|sp|A4SFD1|Y1178_PROVI RecName: Full=UPF0758 protein Cvib_1178
gi|145206147|gb|ABP37190.1| DNA replication and repair protein RadC [Chlorobium phaeovibrioides
DSM 265]
Length = 223
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
NR R+RF+ G AL+ E+L ++L + + LL L + L LQ
Sbjct: 10 NRPRERFIAHGPAALSSAELLAIVLRTGTRKNNILDTCNTLLSLHG-LEALANMNLKELQ 68
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ + IG A+++ + ++R+ + + + + ++ P + +
Sbjct: 69 KTSGIGPSKAMQITAIFELNKRLHYKRNTNR-KIQGARDVYEYMQGRVPDETKEHLFVLH 127
Query: 143 SI 144
Sbjct: 128 LN 129
>gi|291546142|emb|CBL19250.1| DNA replication and repair protein RadC [Ruminococcus sp. SR1/5]
Length = 235
Score = 98.5 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 9/136 (6%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-----RFA 68
DY R ++ L++GE +L+ E+L +IL + + ++A +L ++
Sbjct: 7 EMPDY----QRPYEKCLREGEQSLSDRELLAVILRCGVQGSSSLTLANKILNLSKQTGYS 62
Query: 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
L G+F + L +I+ IGK A++LK + S+R+ A +
Sbjct: 63 GLLGLFHISMQELMKIHGIGKVKAIQLKCIGELSKRMATAAAKPELSFHHPVTIAKYYME 122
Query: 129 HYPMKNANNFAYCFSI 144
+
Sbjct: 123 RLRHEEQELLYCMMLD 138
>gi|188996570|ref|YP_001930821.1| DNA repair protein RadC [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931637|gb|ACD66267.1| DNA repair protein RadC [Sulfurihydrogenibium sp. YO3AOP1]
Length = 229
Score = 98.5 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
+ + R++ L+ G + L+ E+L + L + +A+ +L +
Sbjct: 9 KKRIKELPKDMLPREKALKGGFSFLSDEELLAISLGSGTKGINVIGLAQKILNGK-SFKD 67
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
+ L L++I IG+ AL++ + ++R+ + + K +T ++
Sbjct: 68 LKDITLDDLKKIKGIGEAKALQILAIIEIAKRM--DDHAEKIKITSVSDAFNYLKF-LSK 124
Query: 133 KNANNFAYCFSI 144
+ + +
Sbjct: 125 ETQEHMVALYLN 136
>gi|119487791|ref|ZP_01621300.1| DNA repair protein RadC [Lyngbya sp. PCC 8106]
gi|119455624|gb|EAW36761.1| DNA repair protein RadC [Lyngbya sp. PCC 8106]
Length = 243
Score = 98.5 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 7/130 (5%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALLKR-----FATLGGVF 74
R R+R + G AL+ E++ ++L K + + LL + L +
Sbjct: 13 DERPRERMIAHGSPALSNAELIAILLNTGQGKGKLSAVGLGQFLLNQLSQNQHDPLSILR 72
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
+ L +I+ IG A + +R+ + S K + Q ++ + +
Sbjct: 73 HITVQELTQIHGIGPAKATTIIAAIELGKRVFQLRPSEKAIIETPQAAADALSQDLMWQT 132
Query: 135 ANNFAYCFSI 144
FA
Sbjct: 133 QERFAVLLLD 142
>gi|291557560|emb|CBL34677.1| DNA repair proteins [Eubacterium siraeum V10Sc8a]
Length = 228
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 53/127 (41%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH R+ R + G +E+LE++L+ + DT IA L+ RF +L GVF A
Sbjct: 2 HAGHRERMISRLKEFGSEGFQSHELLEMMLYSSFKQCDTNPIAHRLIDRFGSLSGVFSAS 61
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L E+ +G+ A + ++ +R+L + + L + +
Sbjct: 62 ENELCEVEGVGRSTAQMIIVLRANIERMLSESVQKGEMLGASGAVKDYCMGLFRFVDTEQ 121
Query: 138 FAYCFSI 144
F
Sbjct: 122 LRMIFLD 128
>gi|170076851|ref|YP_001733489.1| DNA repair protein RadC [Synechococcus sp. PCC 7002]
gi|229485573|sp|B1XM86|Y220_SYNP2 RecName: Full=UPF0758 protein SYNPCC7002_A0220
gi|169884520|gb|ACA98233.1| DNA repair protein RadC [Synechococcus sp. PCC 7002]
Length = 243
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKD--TKSIAKALLKRF-----ATLGGVFG 75
R R+R + G L+ E++ +++ ++ +A+ +L+ +
Sbjct: 14 ERPRERLVAVGAKYLSNAELIAILISTGDRHRNLSAVGLAQFILQTCSQGKRDPFDMLRH 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L I +G A ++ +RI +A S K + + I++ ++
Sbjct: 74 TTPQELTSIPGVGLAKAAQILAGIELGKRIFQAKPSEKIIVDSPEAAAIALSNDLMWQDQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 ERFAVLCLD 142
>gi|323699098|ref|ZP_08111010.1| DNA repair protein RadC [Desulfovibrio sp. ND132]
gi|323459030|gb|EGB14895.1| DNA repair protein RadC [Desulfovibrio desulfuricans ND132]
Length = 229
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M AP + Y GH RL+ R + +LA YEILEL+L +PR+DTK AKAL++
Sbjct: 1 MPDAPK--TAPHYTGHRQRLKARL-KDNPRSLADYEILELLLALTLPRRDTKPPAKALIE 57
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF +L A L I +G V + L+ R+ +A + ++ +
Sbjct: 58 RFGSLKEAVLARPDQLDGITGLGPAVQSQWALLQELHARLGEAEARRGQTVSGPDSLARA 117
Query: 126 VERHYPMKNANNFAYCFSI 144
K+ F F
Sbjct: 118 AMARLGHKDTEEFWAVFLD 136
>gi|229824746|ref|ZP_04450815.1| hypothetical protein GCWU000182_00094 [Abiotrophia defectiva ATCC
49176]
gi|229791075|gb|EEP27189.1| hypothetical protein GCWU000182_00094 [Abiotrophia defectiva ATCC
49176]
Length = 240
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LG 71
+ ++ + R +++ ++G L+ E+L L+L + + + +L+ L
Sbjct: 3 TTRIEDLPEDARPFEKYRKQGITMLSDAELLALVLRTGTKNINCMELCRKVLESGGGSLA 62
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
G++G L I +G A+E+ + ++RI + S + L
Sbjct: 63 GLYGKTEKELCNIQGVGPVKAVEIICICELARRIARTRHSYDEPLDTAAKISKRYMEEMR 122
Query: 132 MKNANNFAYCFSI 144
+
Sbjct: 123 HFKEEHVVLLLLD 135
>gi|167750401|ref|ZP_02422528.1| hypothetical protein EUBSIR_01375 [Eubacterium siraeum DSM 15702]
gi|167656552|gb|EDS00682.1| hypothetical protein EUBSIR_01375 [Eubacterium siraeum DSM 15702]
Length = 228
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 53/127 (41%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH R+ R + G +E+LE++L+ + DT IA L+ RF TL GVF A
Sbjct: 2 HAGHRERMISRLKEFGSEGFQSHELLEMMLYSSFKQCDTNPIAHRLIDRFGTLSGVFSAS 61
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L E+ +G+ A + ++ +R+L + + L + +
Sbjct: 62 ENELCEVEGVGRSTAQMIIVLRANIERMLAESVQKGEMLGASGAVKDYCMGLFRFVDTEQ 121
Query: 138 FAYCFSI 144
F
Sbjct: 122 LRMIFLD 128
>gi|150020120|ref|YP_001305474.1| DNA repair protein RadC [Thermosipho melanesiensis BI429]
gi|149792641|gb|ABR30089.1| DNA repair protein RadC [Thermosipho melanesiensis BI429]
Length = 213
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 3/121 (2%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLLQE 83
R++ L +G L +E+L ++L + I+K +L F +L + A + L +
Sbjct: 3 PREKLLTEGTEKLENHELLAILLRTGTKNNNVLEISKKILNYFDNSLLKLSKASIEDLCK 62
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I +GK A + S+R+L K L + + +
Sbjct: 63 IKGLGKAKATTILAAMELSKRLLNEE-RKGKTLNSPELIYEFCK-DMKQFDQEVVRVIML 120
Query: 144 I 144
Sbjct: 121 N 121
>gi|257865156|ref|ZP_05644809.1| DNA repair protein RadC [Enterococcus casseliflavus EC30]
gi|257871480|ref|ZP_05651133.1| DNA repair protein RadC [Enterococcus casseliflavus EC10]
gi|257799090|gb|EEV28142.1| DNA repair protein RadC [Enterococcus casseliflavus EC30]
gi|257805644|gb|EEV34466.1| DNA repair protein RadC [Enterococcus casseliflavus EC10]
Length = 230
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G +AL+ E+L ++L + +A ++L RF L + A + LQEI
Sbjct: 13 PRERLVEYGVDALSNQELLAILLRTGSRPLNVLELAASVLNRFQELYELKQATIDELQEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ A+E+K + RI ++ + + + + +
Sbjct: 73 RGVGQIKAIEIKAMVELGVRIQRSAQPKYGKVNSSMAIAHQLIQELKDCRQEHLLGLYLN 132
>gi|218258236|ref|ZP_03474638.1| hypothetical protein PRABACTJOHN_00292 [Parabacteroides johnsonii
DSM 18315]
gi|218225579|gb|EEC98229.1| hypothetical protein PRABACTJOHN_00292 [Parabacteroides johnsonii
DSM 18315]
Length = 248
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 41/128 (32%), Gaps = 2/128 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGV 73
+ +R R++ L KG +L+ E+L +++ ++ +++ +L L +
Sbjct: 24 KIKEWAEEDRPREKMLLKGIASLSDAELLAILIGSGNSQETAVQLSQRILSSVDNNLNAL 83
Query: 74 FGAPLHL-LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
+ + + IG+ A+ + +R + + L
Sbjct: 84 AKLSIKDLIIKFRGIGEAKAITINAALELGKRRGNSTPIQRPALRTSDDAYRLFHPLLCD 143
Query: 133 KNANNFAY 140
Sbjct: 144 LPHEELWI 151
>gi|148270365|ref|YP_001244825.1| DNA repair protein RadC [Thermotoga petrophila RKU-1]
gi|281412671|ref|YP_003346750.1| DNA repair protein RadC [Thermotoga naphthophila RKU-10]
gi|166218798|sp|A5IM26|Y1235_THEP1 RecName: Full=UPF0758 protein Tpet_1235
gi|147735909|gb|ABQ47249.1| DNA repair protein RadC [Thermotoga petrophila RKU-1]
gi|281373774|gb|ADA67336.1| DNA repair protein RadC [Thermotoga naphthophila RKU-10]
Length = 222
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 5/127 (3%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLLQE 83
R+R ++ G +L+ E++ ++L K ++K LL+RF +L + A L +
Sbjct: 10 PRERMIKAGPESLSVEELVAIVLRTGKKGKHVLELSKDLLERFDGSLIKLSNAGLEEIAS 69
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G A+ LK +R+ + I + L +
Sbjct: 70 VEGVGMVKAITLKAALELGKRLHRELERIPEKLDSSVKVYRYCQ-EMVYLEREIVKVICL 128
Query: 144 I---NII 147
N+I
Sbjct: 129 DTKLNVI 135
>gi|271963692|ref|YP_003337888.1| DNA repair protein RadC [Streptosporangium roseum DSM 43021]
gi|270506867|gb|ACZ85145.1| DNA repair protein RadC [Streptosporangium roseum DSM 43021]
Length = 218
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 2/118 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
++ R+R L G ALA E+L L++ + +A L+ L G+ + H L
Sbjct: 10 DQPRERLLSSGATALADRELLALLIGSGSRGTNAVELASHLIAHCGDLRGLARSDAHRLM 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
+ IG A + ++ + +T +
Sbjct: 70 SVPGIGPAKAARVIAAFHLVRQAQSEPERRR--ITCSGDLAAVASPLLRGLSHERVVV 125
>gi|291530928|emb|CBK96513.1| DNA repair proteins [Eubacterium siraeum 70/3]
Length = 228
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 53/127 (41%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH R+ R + G +E+LE++L+ + DT IA L+ RF TL GVF A
Sbjct: 2 HAGHRERMISRLKEFGSEGFQSHELLEMMLYSSFKQCDTNPIAHRLIDRFGTLSGVFSAS 61
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L E+ +G+ A + ++ +R+L + + L + +
Sbjct: 62 ENELCEVEGVGRSTAQMIIVLRANIERMLSESVQKGEMLGASGAVKDYCMGLFRFVDTEQ 121
Query: 138 FAYCFSI 144
F
Sbjct: 122 LRMIFLD 128
>gi|313113935|ref|ZP_07799492.1| DNA repair protein RadC [Faecalibacterium cf. prausnitzii KLE1255]
gi|310623730|gb|EFQ07128.1| DNA repair protein RadC [Faecalibacterium cf. prausnitzii KLE1255]
Length = 247
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 55/131 (41%)
Query: 7 SKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR 66
++ + H + GH R+R+R G ++LA +E LE +L+ +KDT IA L+ R
Sbjct: 4 KESTAMAEHKRHQGHRQRMRERVQNYGLDSLAEHEALEYVLYLTNAQKDTNGIAHDLIDR 63
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
F V A L + +G A L L+ S+ ++ S + + + +
Sbjct: 64 FGDFAAVLEASEEELCTVEGVGPATARMLHLLPEISRYYGRSRTSTTRCIRTTEQMGSYL 123
Query: 127 ERHYPMKNANN 137
+ +
Sbjct: 124 MAKFAWSDYER 134
>gi|257463623|ref|ZP_05628014.1| DNA repair protein radC [Fusobacterium sp. D12]
gi|317061175|ref|ZP_07925660.1| DNA repair protein radC [Fusobacterium sp. D12]
gi|313686851|gb|EFS23686.1| DNA repair protein radC [Fusobacterium sp. D12]
Length = 227
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
L GH RLR R+L++G ++L YE+LEL+L +PR+DTK++AK LL RF L V
Sbjct: 2 EILSNAGHRGRLRKRYLERGFSSLQEYEVLELLLTYALPRRDTKALAKELLHRFGNLESV 61
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWS--IKKFLTPGQPCLISVERHYP 131
A L+ I + + ++ L+ + + + + + + V+
Sbjct: 62 CKASKEELETIKGVKENTSILLRFIGDLETELFRKTLQKEENIHIHRKEDLISYVKAQIG 121
Query: 132 MKNANNFAYCFSI 144
+N F F
Sbjct: 122 FENREIFLVLFLN 134
>gi|212695706|ref|ZP_03303834.1| hypothetical protein ANHYDRO_00226 [Anaerococcus hydrogenalis DSM
7454]
gi|212677379|gb|EEB36986.1| hypothetical protein ANHYDRO_00226 [Anaerococcus hydrogenalis DSM
7454]
Length = 226
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ +G + L+ E+L +++ +K+ +++ + +F + + + L
Sbjct: 13 RPREKLKNEGFDCLSDEELLAILIGTGSKKKNAIELSREIFSKF-STDELLSISIEELST 71
Query: 84 INRIGKRVALELKLVSVASQRILKA-NWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ I A ++ +R+ + K +T ++ + +F
Sbjct: 72 VDGIKLAKASKIVASIQLGKRLSEKIANKKIKQITSCDDVYNLMKNKFLDTKKEHFYAIL 131
Query: 143 SI--NII 147
N+I
Sbjct: 132 LDTKNVI 138
>gi|325571584|ref|ZP_08147084.1| DNA repair protein RadC [Enterococcus casseliflavus ATCC 12755]
gi|325156060|gb|EGC68256.1| DNA repair protein RadC [Enterococcus casseliflavus ATCC 12755]
Length = 230
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +Q G +AL+ E+L ++L + +A ++L RF L + A + LQEI
Sbjct: 13 PRERLVQYGVDALSNQELLAILLRTGSRPLNVLELAASVLNRFEELYELKEATIDELQEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + RI ++ + + + + +
Sbjct: 73 RGIGQIKAIEIKAMIELGVRIQRSVHPKYGKINSSMAIAHQLIQELKDFRQEHLLGIYLN 132
>gi|257874771|ref|ZP_05654424.1| DNA repair protein RadC [Enterococcus casseliflavus EC20]
gi|257808937|gb|EEV37757.1| DNA repair protein RadC [Enterococcus casseliflavus EC20]
Length = 230
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G +AL+ E+L ++L + +A ++L RF L + A + LQEI
Sbjct: 13 PRERLVEYGVDALSNQELLAILLRTGSRPLNVLELAASVLNRFQELYELKQATIDELQEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ A+E+K + RI ++ + + + + +
Sbjct: 73 RGVGQIKAIEIKAMVELGVRIQRSAQPKYGKVNSSMAIAHQLIQELKDCRQEHLLGLYLN 132
>gi|281420983|ref|ZP_06251982.1| DNA repair protein RadC [Prevotella copri DSM 18205]
gi|281404901|gb|EFB35581.1| DNA repair protein RadC [Prevotella copri DSM 18205]
Length = 229
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 38/127 (29%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAP 77
++ R++ + G +AL+ E+L +++ + + K +LK +
Sbjct: 10 WAEEDKPREKLERLGASALSNAELLGILIGSGSTDESAVDLMKRILKDCDNNLNQLGKKS 69
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L + +G A+ + +R + L + +
Sbjct: 70 IRELTQYKGMGPAKAITILAACELGKRRALDKIGTRPDLGSSLAIYNYMLPKMQDLDTEE 129
Query: 138 FAYCFSI 144
Sbjct: 130 AWLLMMN 136
>gi|302386425|ref|YP_003822247.1| DNA repair protein RadC [Clostridium saccharolyticum WM1]
gi|302197053|gb|ADL04624.1| DNA repair protein RadC [Clostridium saccharolyticum WM1]
Length = 231
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 4/127 (3%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL---KRFATLGGVFGAPL 78
R ++ L++G L+ E+L +I+ ++ ++A+ +L + G+ +
Sbjct: 12 DERPYEKCLKEGPEGLSDAELLSIIIRTGSKEYNSLALAQKILALNYPKEGILGLLHLSM 71
Query: 79 HLLQEINRIGKRVALELKLVSVASQRIL-KANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L + IG +L V S+RI + S + K
Sbjct: 72 PELMSVKGIGAVKGAQLLCVGELSRRIWKRTALSQGTNFCRPLDIVNYFVEDMRHKEQEL 131
Query: 138 FAYCFSI 144
Sbjct: 132 VYIALLN 138
>gi|269121533|ref|YP_003309710.1| DNA repair protein RadC [Sebaldella termitidis ATCC 33386]
gi|268615411|gb|ACZ09779.1| DNA repair protein RadC [Sebaldella termitidis ATCC 33386]
Length = 227
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR R+L+ G N L YEI+EL+L + RKD KSIAK LL ++ + F +
Sbjct: 9 GHRERLRKRYLKSGINGLQDYEIIELLLTYTVLRKDCKSIAKQLLLKYKNISNFFALDKN 68
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWS-IKKFLTPGQPCLISVERHYPMKNANNF 138
I +R + +L+ ++ L + S + L+ + + ++ + K F
Sbjct: 69 EFISNKNISERTYVLFRLIGDIIEKKLYNDISVQRIKLSNNKKLIQYLKYNLGSKKIEIF 128
Query: 139 AYCFSI 144
F
Sbjct: 129 KVLFLN 134
>gi|88705460|ref|ZP_01103171.1| DNA repair protein RadC [Congregibacter litoralis KT71]
gi|88700550|gb|EAQ97658.1| DNA repair protein RadC [Congregibacter litoralis KT71]
Length = 224
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L +G AL+ E+L L+L R A ALL+ L G+ A L +
Sbjct: 12 PREKLLGRGPQALSDAELLALLLPRAGGGNCPTRYAAALLQGADGLAGLLAADRRALLQE 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G L + R + + + +T + + ++ H ++ F F
Sbjct: 72 RGLGPASVSRLLAAVELAARCARQPLTRRDVMTSPEKIRLFLQHHLGSRSREVFCCLFLD 131
>gi|255024472|ref|ZP_05296458.1| DNA repair protein RadC [Listeria monocytogenes FSL J1-208]
Length = 147
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R++ L G +L+ E++ LI+ + +IA ++ +F + + A + Q
Sbjct: 10 EKPREKLLNYGIESLSSSELVALIIETGTKNESVLTIANRIIMKFKNVAEMQYASIEEFQ 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
IN IG A ++ +RI + + + + V F F
Sbjct: 70 LINGIGIAKASKIMAAIELGKRISIVTEQEEVVVRCPEDAVKLVMPELAFLFLRTFHCLF 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|282859078|ref|ZP_06268210.1| DNA repair protein RadC [Prevotella bivia JCVIHMP010]
gi|282588158|gb|EFB93331.1| DNA repair protein RadC [Prevotella bivia JCVIHMP010]
Length = 225
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 1/124 (0%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAPLHL 80
+R R++ ++ G AL+ E+L +++ + + + + +L + H
Sbjct: 9 DDRPREKMMRLGAEALSNAELLAILIGSGSLEESSVELMQHVLSDCNNNLNTLGKLSQHE 68
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L++ IG A+ L +R ++ L +
Sbjct: 69 LEQYKGIGPAKAITLLAACELGKRRQATEQEVRPDLGSAVAIYNYMHPKLQDAPVEEAWI 128
Query: 141 CFSI 144
Sbjct: 129 LLMN 132
>gi|189347307|ref|YP_001943836.1| DNA repair protein RadC [Chlorobium limicola DSM 245]
gi|189341454|gb|ACD90857.1| DNA repair protein RadC [Chlorobium limicola DSM 245]
Length = 222
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 2/130 (1%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ + NR R+R L G ++L+ E+L +IL + ++ + L +
Sbjct: 2 RIHDLDPENRPRERLLLYGASSLSPAELLAIILRSGSKNLNIIDTCHEIIAAYG-LERLA 60
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
L LQ+I IG A+++ + ++RI + + + + + P +
Sbjct: 61 DLQLSELQKIRGIGPAKAMQISAIFELNKRIHFRK-NNNRKILSARDVSEYMAGRIPDET 119
Query: 135 ANNFAYCFSI 144
+
Sbjct: 120 KEHLFVLHLN 129
>gi|225011591|ref|ZP_03702029.1| DNA repair protein RadC [Flavobacteria bacterium MS024-2A]
gi|225004094|gb|EEG42066.1| DNA repair protein RadC [Flavobacteria bacterium MS024-2A]
Length = 232
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 1/135 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FAT 69
K + +R R++ +G + L+ E+ +++ + + K +L
Sbjct: 5 KKSFTIKDWDVSDRPREKLKSQGASYLSNAELFAVLIGYGSSSESAVGLMKRILLSINND 64
Query: 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERH 129
L P+ L E IG+ A++LK V S+R K L + S+
Sbjct: 65 LQKFDQLPIERLVEFKGIGEVKAIKLKAVVELSKRFQKQQPDKTTVLNSSKIVYESIYMD 124
Query: 130 YPMKNANNFAYCFSI 144
F +
Sbjct: 125 LDTLPHEEFWILYLN 139
>gi|206561051|ref|YP_002231816.1| DNA repair protein RadC [Burkholderia cenocepacia J2315]
gi|198037093|emb|CAR53014.1| putative DNA repair protein [Burkholderia cenocepacia J2315]
Length = 209
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 45/116 (38%)
Query: 29 FLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIG 88
L++G AL E++ L+L P D A+AL+++F TL G+ A + IG
Sbjct: 1 MLERGPAALTDDELIALLLGTGKPGHDVFVTARALVEQFGTLRGLLEASADDFEAYPGIG 60
Query: 89 KRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ L V+ ++R+L + + + + F +
Sbjct: 61 PARSARLVAVTEIARRMLVEKAEERMPIDSPGAVEDCLRLKIGTRQYEVFIAVYLD 116
>gi|167737518|ref|ZP_02410292.1| DNA repair protein RadC [Burkholderia pseudomallei 14]
Length = 199
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 36/106 (33%)
Query: 39 YYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLV 98
E++ L+L +P D ++A LL RF +L + A + + IG L V
Sbjct: 1 DAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDFKGLRGIGPARTAILVAV 60
Query: 99 SVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++R L + + + + F F
Sbjct: 61 VELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCLFLD 106
>gi|260584697|ref|ZP_05852443.1| DNA repair protein RadC [Granulicatella elegans ATCC 700633]
gi|260157720|gb|EEW92790.1| DNA repair protein RadC [Granulicatella elegans ATCC 700633]
Length = 228
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + G +L YE+L ++L + ++K +L F L + A + L I
Sbjct: 16 PRERLEKLGAKSLETYELLAILLRTGSRELNVLQLSKVVLNTFEDLFTLKMATVEELMAI 75
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+ELK R+ A + +T Q + + F
Sbjct: 76 HGIGRTKAIELKAAMELGIRLGTAKQTKLGHITSSQKAGECIMEELKDLYQEHLIALFLN 135
>gi|239817003|ref|YP_002945913.1| DNA repair protein RadC [Variovorax paradoxus S110]
gi|259551914|sp|C5CWP0|Y4033_VARPS RecName: Full=UPF0758 protein Vapar_4033
gi|239803580|gb|ACS20647.1| DNA repair protein RadC [Variovorax paradoxus S110]
Length = 225
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 1/124 (0%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R++ + +G ALA E+L L+L + K+ +A+ LL F L G+ L
Sbjct: 9 HARPREKLIARGAAALADAELLALLLRTGVAGKNVLQLAQELLDHFGGLSGLLQTSAEDL 68
Query: 82 QEINRI-GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
+ I + G EL V ++R + + ++ H + FA
Sbjct: 69 KVIKGMGGDAKRAELIAVLELARRAMAERLKERTVFDSPGTVKQYLQLHIGSRPYEVFAV 128
Query: 141 CFSI 144
F
Sbjct: 129 LFLD 132
>gi|325263906|ref|ZP_08130639.1| DNA repair protein RadC [Clostridium sp. D5]
gi|324030944|gb|EGB92226.1| DNA repair protein RadC [Clostridium sp. D5]
Length = 231
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK---RFATLGGVFGAPLH 79
R ++ + G + L E+L ++L +++ +A+ LL + +
Sbjct: 14 ARPYEKCAKYGASNLTNIELLAVLLRTGTRGENSLQLAEKLLHPDFAQEGILSLHQWTRE 73
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L I IGK A+++ +S S+R+ KA +
Sbjct: 74 QLLLIRGIGKVKAVQILCLSELSKRLSKATAESGLNFSSPASVARYYMEDMRHNRQETMK 133
Query: 140 YCFSI 144
Sbjct: 134 LLLLN 138
>gi|291563258|emb|CBL42074.1| DNA replication and repair protein RadC [butyrate-producing
bacterium SS3/4]
Length = 235
Score = 97.3 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 3/117 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK--RFATLGGVFGAPLHL 80
R ++ L+KG +L+ E+L +IL + +A+ +L L G+ +
Sbjct: 16 ERPYEKVLEKGPVSLSDAELLSVILRSGTKNIPVRDMAEEILNAGNPPGLAGLLHGTVED 75
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCLISVERHYPMKNAN 136
+EI +G+ A++L + S RI KA S K
Sbjct: 76 YKEIRGVGEVKAIQLACIGELSARIWKAAASEKTIVFDAPSKVAAFYMEEMRHLEQE 132
>gi|169350149|ref|ZP_02867087.1| hypothetical protein CLOSPI_00891 [Clostridium spiroforme DSM 1552]
gi|169292932|gb|EDS75065.1| hypothetical protein CLOSPI_00891 [Clostridium spiroforme DSM 1552]
Length = 225
Score = 97.3 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 1/130 (0%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ R R++ G ++L E+L LIL ++ +A+ ++ L +
Sbjct: 2 KIKNYPEKERPREKAYYYGIDSLTNNELLALILRTGSKKESALQLAQRVINEVGGLSYLK 61
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
H L IN I K A+ + V ++RI + + + V+ +
Sbjct: 62 DVTYHQLVSINGIKKAKAISILAVIELTKRIKGIQ-KEQTVIKEPKDGYYLVKDKLMFEQ 120
Query: 135 ANNFAYCFSI 144
+
Sbjct: 121 QEHVIILCLN 130
>gi|88608186|ref|YP_506123.1| DNA repair protein RadC [Neorickettsia sennetsu str. Miyayama]
gi|88600355|gb|ABD45823.1| DNA repair protein RadC [Neorickettsia sennetsu str. Miyayama]
Length = 236
Score = 97.3 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 56/127 (44%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH RLR R +Q ++ E+LE +LF PR D K +AK+LLK F +F A
Sbjct: 17 HKGHRLRLRQRIIQDTAGTISELELLEYLLFGTHPRIDIKPLAKSLLKEFGDFKKLFAAD 76
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L+ +N + V ++ V + + IL+ + + + L + + + K
Sbjct: 77 PDDLRSVNGVSDAVVALIRTVRESMKAILRKDLTSRTTLKSWKSVVDYLRLSIGNKPVET 136
Query: 138 FAYCFSI 144
F
Sbjct: 137 IRVLFLN 143
>gi|171316763|ref|ZP_02905975.1| DNA repair protein RadC [Burkholderia ambifaria MEX-5]
gi|171098113|gb|EDT42928.1| DNA repair protein RadC [Burkholderia ambifaria MEX-5]
Length = 258
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 2/139 (1%)
Query: 7 SKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR 66
AP + H R+R L++G AL E++ L+L +D + A+ALL R
Sbjct: 28 GAAPPRKRRPRNWKPHL-PRERLLERGPAALTDAELIALLLGTGGGGRDVFASARALLAR 86
Query: 67 FA-TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
F +L + A + IG + L V+ +R L + +
Sbjct: 87 FGDSLRDMLDAEPDVFATHPGIGTARSAVLIAVTEIVRRALVEKARERLQIDSPGAVEDY 146
Query: 126 VERHYPMKNANNFAYCFSI 144
+ + F +
Sbjct: 147 LRLRIGTRPHEVFVTLYLD 165
>gi|218245274|ref|YP_002370645.1| DNA repair protein RadC [Cyanothece sp. PCC 8801]
gi|257058307|ref|YP_003136195.1| DNA repair protein RadC [Cyanothece sp. PCC 8802]
gi|218165752|gb|ACK64489.1| DNA repair protein RadC [Cyanothece sp. PCC 8801]
gi|256588473|gb|ACU99359.1| DNA repair protein RadC [Cyanothece sp. PCC 8802]
Length = 243
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRK--DTKSIAKALL-----KRFATLGGVFG 75
R R+R L G +LA E+L ++L + + +L R L +
Sbjct: 14 ERPRERLLTLGAKSLATAELLAILLGTGQGKGKLSAVGLGHYILQELSQHRRDPLDVLRE 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L I IG A + +R + + + ++ +
Sbjct: 74 INPQELMAIEGIGPAKATTILAAIELGKRAFQVRPMERIVIENPDTAAAALSHDLMWQTQ 133
Query: 136 NNFAYCFSI 144
FA F
Sbjct: 134 ERFAVVFLD 142
>gi|313893130|ref|ZP_07826707.1| DNA repair protein RadC [Veillonella sp. oral taxon 158 str. F0412]
gi|313442483|gb|EFR60898.1| DNA repair protein RadC [Veillonella sp. oral taxon 158 str. F0412]
Length = 279
Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 2/123 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
R R++FL G + LA E+L ++L + + S+A +++ F + G+ + L
Sbjct: 62 QRPREKFLTLGPSHLAMEELLAILLRTGVKGQSAISLASDIVQSFDDGVYGLNRMTVEKL 121
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAY 140
+I IG A+ L +R+ + + V ++ +
Sbjct: 122 VKIKGIGTDKAVTLCAALEMGRRLGELKIKETYQDFSQPFVIAQYVMERLRHEDVEHVWA 181
Query: 141 CFS 143
Sbjct: 182 AML 184
>gi|291544071|emb|CBL17180.1| DNA repair protein radc [Ruminococcus sp. 18P13]
Length = 233
Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK 65
M K P+ + GH +R+R +FLQ+G +E+LEL LF +PR +T +A LL+
Sbjct: 1 MGKEPA--EQSLHSGHRDRMRAKFLQQGLEGFQEHEMLELTLFYALPRVNTNEVAHRLLQ 58
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF +L V A H L+++ +G+ A+ L L++ S++ + + L
Sbjct: 59 RFGSLADVLNADYHALRDVKGMGESSAMLLTLIAQLSRQY-RLSARKDLTLNTFDATCAY 117
Query: 126 VERHYPMKNANNFAYCFSIN 145
+ Y + +
Sbjct: 118 FKDIYLGEPEEQLRLACLDD 137
>gi|134296674|ref|YP_001120409.1| DNA repair protein RadC [Burkholderia vietnamiensis G4]
gi|172044368|sp|A4JH21|Y2579_BURVG RecName: Full=UPF0758 protein Bcep1808_2579
gi|134139831|gb|ABO55574.1| DNA replication and repair protein RadC [Burkholderia vietnamiensis
G4]
Length = 258
Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 3/136 (2%)
Query: 10 PSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA- 68
P K ++ H R+R L++G AL E++ L+L +D A+ALL RF
Sbjct: 32 PRKRRARNWKPHL--PRERLLERGPAALTDAELVALLLGTGGGGRDVFDSARALLARFGD 89
Query: 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
+L + A + IG A L V+ ++R L + + +
Sbjct: 90 SLRDMLDAQPGVFTTHPGIGDARAAVLIAVTEITRRALVEKARRRMPIDSPGAVEDYLRL 149
Query: 129 HYPMKNANNFAYCFSI 144
M+ F +
Sbjct: 150 RIGMRPYEVFVTLYLD 165
>gi|295101804|emb|CBK99349.1| DNA repair protein radc [Faecalibacterium prausnitzii L2-6]
Length = 244
Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 56/133 (42%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
++ + GH R+R R Q G +LA +E LE +L+ R+DT IA ALL+RF +
Sbjct: 2 AGQNISHEGHRQRMRARVEQYGLESLAPHEALEYLLYITNARRDTNGIAHALLERFGSFA 61
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
GV A L + +G A L L+ S+ + S + LT + ++ +
Sbjct: 62 GVLEASEEELCRVPGVGPASARMLHLLPEVSRYYEHSRTSTEGALTTTERLAAYLKPRFA 121
Query: 132 MKNANNFAYCFSI 144
Sbjct: 122 GAKQEKALLLSLD 134
>gi|166367176|ref|YP_001659449.1| DNA repair protein RadC [Microcystis aeruginosa NIES-843]
gi|229470320|sp|B0JTF4|Y4435_MICAN RecName: Full=UPF0758 protein MAE_44350
gi|166089549|dbj|BAG04257.1| DNA repair protein [Microcystis aeruginosa NIES-843]
Length = 243
Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALL-----KRFATLGGVFG 75
R R+R + G L+ E+L ++L K + + +L R L +
Sbjct: 14 ERPRERLISVGAKNLSNAELLAILLATGQGKGKLSAVGLGQHILNELSKYRRDPLDVLRD 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L I+ IG A + +R + + K + + ++
Sbjct: 74 IHPQELTAIHGIGPAKATTILAAIELGKRAFQRRPTEKMVIDSPDTAAAILGHELMYQSQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 ERFAVILLD 142
>gi|159028578|emb|CAO90580.1| radC [Microcystis aeruginosa PCC 7806]
Length = 243
Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALL-----KRFATLGGVFG 75
R R+R + G L+ E+L ++L K + + +L R L +
Sbjct: 14 ERPRERLISVGAKNLSNAELLAILLATGQGKGKLSAVGLGQHILNELSKYRRDPLDVLRD 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L I+ IG A + +R + + K + + ++
Sbjct: 74 IQPQELTAIHGIGPAKATTILAAIELGKRAFQRRPTEKMVIDSPDTAAAILGHELMYQSQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 ERFAVILLD 142
>gi|167745627|ref|ZP_02417754.1| hypothetical protein ANACAC_00319 [Anaerostipes caccae DSM 14662]
gi|317472772|ref|ZP_07932083.1| DNA repair protein RadC [Anaerostipes sp. 3_2_56FAA]
gi|167654939|gb|EDR99068.1| hypothetical protein ANACAC_00319 [Anaerostipes caccae DSM 14662]
gi|316899691|gb|EFV21694.1| DNA repair protein RadC [Anaerostipes sp. 3_2_56FAA]
Length = 232
Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 8/139 (5%)
Query: 14 SHLDY----IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT 69
Y + R ++ + G AL E+L +L K ++A +L
Sbjct: 2 EKRHYTIKELPESERPYEKCERLGPEALTDAELLAAVLRSGAKDKRATALAVEILGLHPY 61
Query: 70 LGGVF---GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
G+ ++ L I IG+ A+++ ++ S R+ K +
Sbjct: 62 YEGLLGICHVTMNELMRIRGIGRVKAVQILCIAELSMRLSSQKVHKKISFHTPKSIADYY 121
Query: 127 ERHYPMKNANNFAYCFSIN 145
N N
Sbjct: 122 MEKMRHLNREE-MILILFN 139
>gi|307154341|ref|YP_003889725.1| DNA repair protein RadC [Cyanothece sp. PCC 7822]
gi|306984569|gb|ADN16450.1| DNA repair protein RadC [Cyanothece sp. PCC 7822]
Length = 243
Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALLKRFATLGG-----VFG 75
R R+R L G +L+ E+L ++L K + + +L + +
Sbjct: 14 ERPRERLLSLGAKSLSDAELLAILLATGQGKGKLSAVGLGQYILSELSKYKREPLDVLRD 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L I+ IG A + +R + K + ++ +N
Sbjct: 74 ISPQELMAIHGIGPAKATTILAAIELGKRSFQLRPMEKMVIDNPVAAAAALSHDLMWQNQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 ERFAIVLLN 142
>gi|323351534|ref|ZP_08087188.1| DNA repair protein RadC [Streptococcus sanguinis VMC66]
gi|322122020|gb|EFX93746.1| DNA repair protein RadC [Streptococcus sanguinis VMC66]
Length = 227
Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G L+ E+L + L ++ +++ +L ++L + L LQ I
Sbjct: 14 PRERLMREGAEKLSNQELLSIFLRTGNKKETVFQVSQRILSSLSSLNDLKYLTLQELQTI 73
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG A+EL+ + +RI +A K+ + Q +++ +
Sbjct: 74 SGIGPIKAVELQAIIELGRRINRAEVLQKEQIMGSQKLAQKMQQELGDMRQECLVAIYLN 133
>gi|81428462|ref|YP_395462.1| DNA repair protein (RadC) [Lactobacillus sakei subsp. sakei 23K]
gi|123564345|sp|Q38XC8|Y852_LACSS RecName: Full=UPF0758 protein LCA_0852
gi|78610104|emb|CAI55153.1| DNA repair protein (RadC) [Lactobacillus sakei subsp. sakei 23K]
Length = 224
Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ G +L+ ++ +IL + +A+ LL+R+ + A L L++I
Sbjct: 10 PREQVALYGAASLSDEQLATVILRSGTQHLPVEVVAQRLLQRYPDFQDLEQADLVQLRQI 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A+EL+ + S+RI + Q + + +
Sbjct: 70 EGIGPVKAIELQAICELSRRIQNQRTLRFGVVASSQMVGQRMIESLAGETQEQLLAVYLD 129
>gi|325689664|gb|EGD31668.1| DNA repair protein RadC [Streptococcus sanguinis SK115]
gi|327489851|gb|EGF21641.1| DNA repair protein RadC [Streptococcus sanguinis SK1058]
Length = 227
Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R +++G L+ E+L + L ++ +++ +L ++L + L LQ I
Sbjct: 14 PRERLMREGAEKLSNQELLSIFLRTGNKKETVFQVSQRILSSLSSLNDLKYLTLQELQTI 73
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG A+EL+ + +RI +A K+ + Q +++ +
Sbjct: 74 SGIGPIKAVELQAIIELGRRINRAEVLQKEQIMGSQKLAQKMQQELGDMRQECLVAIYLN 133
>gi|313672322|ref|YP_004050433.1| DNA repair protein radc [Calditerrivibrio nitroreducens DSM 19672]
gi|312939078|gb|ADR18270.1| DNA repair protein RadC [Calditerrivibrio nitroreducens DSM 19672]
Length = 222
Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
Y+GH RL++RF + ++ YE++EL++ +I +D K +K L+K
Sbjct: 4 HYLGHRKRLKERF-KGSPESIPDYELIELLIGYVIKGRDVKKESKELVKFIEGN--FNNI 60
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQR-ILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
++ ++ IG+ V L K++ +R L + K + + ++ ++
Sbjct: 61 FFKDIKNVDGIGEEVDLLFKIIKEFLRRLSLHNHSFNKDIIKSPRDVYDYIKNSIGYQDK 120
Query: 136 NNFAYCFSI---NII 147
+F N+I
Sbjct: 121 ESFMVILLNSAGNVI 135
>gi|241767328|ref|ZP_04765050.1| DNA repair protein RadC [Acidovorax delafieldii 2AN]
gi|241361963|gb|EER58149.1| DNA repair protein RadC [Acidovorax delafieldii 2AN]
Length = 237
Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 13/141 (9%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK----------- 65
+ + R++ L +G ALA E+L ++L I K +A+ LL
Sbjct: 4 KDLPPDAQPREKLLARGPAALADAELLAILLRTGIVGKGVLQMAQELLDPPGVDPATGCI 63
Query: 66 --RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
F + G+ L+ I +G EL V ++R L ++
Sbjct: 64 TGGFGGIAGLLHTSAADLERIKGLGPAKRAELVAVLELARRALAQQLREREVFDSPDAVK 123
Query: 124 ISVERHYPMKNANNFAYCFSI 144
++ H K FA F
Sbjct: 124 HYLQLHLGAKGHEVFAVLFLD 144
>gi|299822789|ref|ZP_07054675.1| DNA repair protein RadC [Listeria grayi DSM 20601]
gi|299816318|gb|EFI83556.1| DNA repair protein RadC [Listeria grayi DSM 20601]
Length = 226
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 2/124 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
++ R++ +G+ L E+L ++L S+A ++ ++ +LG + + L+
Sbjct: 10 DKPREKMQTRGQAQLTITELLAILLETGTKEDSVLSLANKIILKYKSLGDIKDLTIEELR 69
Query: 83 EINRIGKRVALELKLVSVASQRIL--KANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
IN IG A ++ +RI + + Q + V +F
Sbjct: 70 SINGIGLAKATKIMAAIEIGKRICLQSESEKNNIAIRSPQDAVSIVLPELAFLFQEHFHC 129
Query: 141 CFSI 144
Sbjct: 130 VLLN 133
>gi|299142824|ref|ZP_07035952.1| DNA repair protein RadC [Prevotella oris C735]
gi|298575692|gb|EFI47570.1| DNA repair protein RadC [Prevotella oris C735]
Length = 228
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 1/128 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAP 77
+ R +F G + ++ E+L +I+ + + + L+ +L +
Sbjct: 9 WVKEEQPRFKFDNVGCDVVSNAELLSIIIGSGSAELNAVDLCRQLMNACGHSLARLARMS 68
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L + IG+ AL ++ +R + +
Sbjct: 69 TYELMQFEGIGRSKALSIRAALEIGKRRQIEQAKDTIDFSSSVAMYDYLLPKMRDLPLEQ 128
Query: 138 FAYCFSIN 145
F +
Sbjct: 129 AHVLFLNH 136
>gi|75906397|ref|YP_320693.1| DNA repair protein RadC [Anabaena variabilis ATCC 29413]
gi|123610894|sp|Q3MGT8|Y172_ANAVT RecName: Full=UPF0758 protein Ava_0172
gi|75700122|gb|ABA19798.1| DNA replication and repair protein RadC [Anabaena variabilis ATCC
29413]
Length = 243
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALLKRFATLGG-----VFG 75
R R+R + G LA E++ ++L P K + + LL+ +
Sbjct: 14 ERPRERLMTHGPKVLATAELIAILLGTGQGPGKLSAVGLGQYLLQELGKNQRDPLAVLRE 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L +I IG A + +R + K + + ++ + +N
Sbjct: 74 VTPAELMQIPGIGPAKATSILAAVELGKRTFQFRPLDKTPIDSPVAAVAALSQDLMWQNQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 ERFAVLLLD 142
>gi|313887968|ref|ZP_07821646.1| DNA repair protein RadC [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845923|gb|EFR33306.1| DNA repair protein RadC [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 239
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 7/146 (4%)
Query: 6 MSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRL-IPRKDTKSIAKALL 64
M + + + + R +++ ++ G + L+ E+L LI+ A +L
Sbjct: 1 MKERDFEKYTIKEMPADERPQEKLIKFGPDYLSNAELLALIIRTGNSKGDSAIDTATKVL 60
Query: 65 KR------FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTP 118
+ L + A L L E++ IG+ A + R+ ++ K +T
Sbjct: 61 RSLRSANDSNGLNSLKNASLSDLMEVDGIGEAKAAMILAAVQLGIRLAVSSNGSKIRVTS 120
Query: 119 GQPCLISVERHYPMKNANNFAYCFSI 144
V + +F
Sbjct: 121 PSIAANYVLSEMSVLEQEHFRIMTLN 146
>gi|282901217|ref|ZP_06309146.1| DNA repair protein RadC [Cylindrospermopsis raciborskii CS-505]
gi|281193917|gb|EFA68885.1| DNA repair protein RadC [Cylindrospermopsis raciborskii CS-505]
Length = 243
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 7/137 (5%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALLKRFAT--- 69
+ + + R R+R + G LA E++ ++L P K + + +L+
Sbjct: 6 RISDLPENERPRERLITHGAKVLATAELIAILLGTGQGPGKLSAVGLGQHILQELGKDQG 65
Query: 70 --LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
L + A L EI+ +G A + +R+ + + + ++
Sbjct: 66 DPLAALRDATPAQLTEIHGVGSAKATSILAAVELGKRVFLSRPAEGAIIDSPIAAAATLS 125
Query: 128 RHYPMKNANNFAYCFSI 144
+ ++ FA
Sbjct: 126 QDLMWQSQEKFAVLLLD 142
>gi|17229843|ref|NP_486391.1| DNA repair protein RadC [Nostoc sp. PCC 7120]
gi|25009016|sp|Q8YUJ5|Y2351_ANASP RecName: Full=UPF0758 protein alr2351
gi|17131443|dbj|BAB74050.1| DNA repair protein [Nostoc sp. PCC 7120]
Length = 243
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALLKRFATLGG-----VFG 75
R R+R + G LA E++ ++L P K + + LL+ +
Sbjct: 14 ERPRERLMTHGPKVLATAELIAILLGTGQGPGKLSAVGLGQYLLQELGKNQRDPLAVLRE 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L +I IG A + +R + K + + ++ + +N
Sbjct: 74 VTPAELMQIPGIGPAKATSILAAVELGKRTFQFRPLDKTPIDSPVAAVAALSQDLMWQNQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 ERFAVLLLD 142
>gi|160934210|ref|ZP_02081597.1| hypothetical protein CLOLEP_03081 [Clostridium leptum DSM 753]
gi|156866883|gb|EDO60255.1| hypothetical protein CLOLEP_03081 [Clostridium leptum DSM 753]
Length = 251
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH +RLR++F++ G ++L +E++EL+L+ +PRKD +A LL+ F + + AP
Sbjct: 7 HDGHRDRLREKFIRHGLSSLEPHEVVELMLYAAVPRKDMNPLAHELLEGFGSFPALLDAP 66
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L + IG+ A+ +KL S + +++ T + + + + ++
Sbjct: 67 IEELMKYKGIGRGSAITIKLFSAIGRFYIESKADKGP--TSMEEVIDIILSKFTGRSNEA 124
Query: 138 FAYCFSI 144
Sbjct: 125 VVLTLLD 131
>gi|227484623|ref|ZP_03914939.1| DNA repair protein RadC [Anaerococcus lactolyticus ATCC 51172]
gi|227237343|gb|EEI87358.1| DNA repair protein RadC [Anaerococcus lactolyticus ATCC 51172]
Length = 226
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ ++ G +L+ E+L +I+ +K+ +A+ +L F + + + L
Sbjct: 12 DRPREKLIKLGHASLSEKELLAIIISTGTDKKNAIELAEEILATF-SEEALLEIEVEELT 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+IN I + A ++ +RI + K + + ++ +K+ F
Sbjct: 71 KINGIKEAKASKIVASLQFGKRIKEKILNKKKYQINSNEEAYEFIKDTISLKDREYFYTI 130
Query: 142 FSIN 145
N
Sbjct: 131 LLNN 134
>gi|317503618|ref|ZP_07961638.1| DNA repair protein RadC [Prevotella salivae DSM 15606]
gi|315665279|gb|EFV04926.1| DNA repair protein RadC [Prevotella salivae DSM 15606]
Length = 228
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 1/128 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAP 77
+ R +F G + ++ E+L +I+ + + + L+ +L +
Sbjct: 9 WVKEEQPRFKFDNVGCDVVSNAELLSIIIGSGSAELNAVDLCRQLMNACGHSLARLARMS 68
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L + IG+ AL ++ +R + +
Sbjct: 69 TYELMQFEGIGRSKALSIRAALEIGKRRQIEQAKDTIDFSSSVAMYDYLLPKMRDLPLEQ 128
Query: 138 FAYCFSIN 145
F +
Sbjct: 129 AHVLFLNH 136
>gi|126657586|ref|ZP_01728741.1| DNA repair protein RadC [Cyanothece sp. CCY0110]
gi|126621042|gb|EAZ91756.1| DNA repair protein RadC [Cyanothece sp. CCY0110]
Length = 242
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRK--DTKSIAKALL-----KRFATLGGVFG 75
R R+R + G LA E+L ++L + + +L R L +
Sbjct: 14 ERPRERLMAVGAKNLATAELLAILLGTGQGKGKLSAVGLGHHILQELSKHRRDPLDILRD 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
H L I+ IG A + +R + + + + + ++ +
Sbjct: 74 ISPHELMSIDGIGPAKATTIIAAVELGKRTFQVRPLERVTIDSPEAAVAALSHDLMWERR 133
Query: 136 NNFAYCFSI 144
+FA F
Sbjct: 134 EHFAAVFLD 142
>gi|146329081|ref|YP_001209721.1| response regulator receiver domain-containing protein
[Dichelobacter nodosus VCS1703A]
gi|146232551|gb|ABQ13529.1| response regulator receiver domain protein-DNA repair protein RadC
[Dichelobacter nodosus VCS1703A]
Length = 401
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 1/121 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L+ G +AL+ E+L ++L + K + A+ L+ L G+ + L I
Sbjct: 185 PRERILRLGASALSDAELLAILLRTGVIGKPVLAFAQELIASRGGLVGLLTSRKEHLLPI 244
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFS 143
IG+ E+ V+ +R + A+ + ++ + + HY A
Sbjct: 245 KGIGQAKTAEILAVTELCKRFIAADLQLPEWQFSSADDVRNFLLMHYKGLGFEEVAILLL 304
Query: 144 I 144
Sbjct: 305 N 305
>gi|172061461|ref|YP_001809113.1| DNA repair protein RadC [Burkholderia ambifaria MC40-6]
gi|238692852|sp|B1YV93|Y2419_BURA4 RecName: Full=UPF0758 protein BamMC406_2419
gi|171993978|gb|ACB64897.1| DNA repair protein RadC [Burkholderia ambifaria MC40-6]
Length = 258
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 1/121 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAPLHLLQE 83
R+R L++G AL E++ L+L +D + A+ALL RF +L + A +
Sbjct: 45 PRERLLERGPAALTDAELIALLLGTGGGGRDVFASARALLARFGDSLRDMLDAEPDVFAT 104
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
IG + L V+ ++R L + + + + F +
Sbjct: 105 HPGIGTARSAVLIAVTEIARRALVEKARERLQIDSPGAVEDYLRLRIGTRPHEVFVTLYL 164
Query: 144 I 144
Sbjct: 165 D 165
>gi|227499946|ref|ZP_03930039.1| DNA repair protein RadC [Anaerococcus tetradius ATCC 35098]
gi|227218055|gb|EEI83328.1| DNA repair protein RadC [Anaerococcus tetradius ATCC 35098]
Length = 228
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 4/128 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ +++G ++L+ E+L +IL K+ ++K +L F + + + L+
Sbjct: 14 DRPREKMIREGFDSLSDEELLAIILSTGNKEKNVIDLSKEILDTF-SYEELLEIEVVELR 72
Query: 83 EINRIGKRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I I + A ++ +RI + + +T ++ F
Sbjct: 73 RIKGIKEAKASKIVAALQLGRRINERVLDRKIEKITSSNDVYEIMKTKLENAKKEYFYAI 132
Query: 142 FSI--NII 147
N+I
Sbjct: 133 LLDTKNVI 140
>gi|227550362|ref|ZP_03980411.1| DNA repair protein RadC [Enterococcus faecium TX1330]
gi|227180501|gb|EEI61473.1| DNA repair protein RadC [Enterococcus faecium TX1330]
Length = 225
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G AL+ E+L ++L SIA LLK F L + A LH L+EI
Sbjct: 10 PRERMEIYGAEALSDQELLAILLRTGQHPHSVMSIAGNLLKTFGGLASLRQATLHELEEI 69
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI + + + +
Sbjct: 70 RGIGRVKAIEIKALIELGRRIQTDQERAAPAIRTSHELAQQLILEMKDYKQEHLICIYLD 129
>gi|172037408|ref|YP_001803909.1| DNA repair protein RadC [Cyanothece sp. ATCC 51142]
gi|226713857|sp|B1WRJ4|Y2495_CYAA5 RecName: Full=UPF0758 protein cce_2495
gi|171698862|gb|ACB51843.1| DNA repair protein radC [Cyanothece sp. ATCC 51142]
Length = 242
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRK--DTKSIAKALL-----KRFATLGGVFG 75
R R+R + G LA E+L ++L + + +L R L +
Sbjct: 14 ERPRERLMAVGAKNLATAELLAILLGTGQGKGKLSAVGLGHHILQELSKHRRDPLDILRD 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
H L I+ IG A + +R + + + + + ++ +
Sbjct: 74 ISPHELMSIDGIGPAKATTIIAAVELGKRTFQVRPLERVTIDSPEAAVAALSHDLMWERR 133
Query: 136 NNFAYCFSI 144
+FA F
Sbjct: 134 EHFAAVFLD 142
>gi|67923800|ref|ZP_00517262.1| DNA repair protein RadC [Crocosphaera watsonii WH 8501]
gi|67854343|gb|EAM49640.1| DNA repair protein RadC [Crocosphaera watsonii WH 8501]
Length = 242
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRK--DTKSIAKALLKRFATLGG-----VFG 75
R R+R + G LA E+L +++ + + +L+ +
Sbjct: 14 ERPRERLIAVGAKNLATAELLAILIGTGQGKGKLSAVGLGHHILQELGKHRRDPLDVLRD 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L I+ IG A + +R + + + + + ++ +
Sbjct: 74 ISPNELMVIDGIGPAKATTIIAAVELGKRTFQVRPLERVVIDSPEAAVAALSHDLMWERR 133
Query: 136 NNFAYCFSI 144
+FA F
Sbjct: 134 EHFAAVFLD 142
>gi|283769057|ref|ZP_06341963.1| putative DNA repair protein RadC [Bulleidia extructa W1219]
gi|283104414|gb|EFC05791.1| putative DNA repair protein RadC [Bulleidia extructa W1219]
Length = 223
Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 43/121 (35%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R++ LQ G ++L+ E+L L L +A +L R + G+ L
Sbjct: 9 EQPREKALQYGLSSLSNRELLALQLRTGYRHHSALEVADEILARADGISGLPRLSRQELI 68
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I I + ALEL + +R A + +++ F F
Sbjct: 69 QIPGISQIKALELLAIFEIVRRSSAAKLPTLPRVQHPSVLFDWLKQEIGTSLQEKFLVVF 128
Query: 143 S 143
Sbjct: 129 L 129
>gi|257888395|ref|ZP_05668048.1| DNA repair protein RadC [Enterococcus faecium 1,141,733]
gi|257824449|gb|EEV51381.1| DNA repair protein RadC [Enterococcus faecium 1,141,733]
Length = 230
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G AL+ E+L ++L SIA LLK F L + A LH L+EI
Sbjct: 15 PRERMEIYGAEALSDQELLAILLRTGQHPHSVMSIASNLLKTFGGLASLRQATLHELEEI 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI + + + +
Sbjct: 75 RGIGRVKAIEIKALIELGRRIQTDQERAAPAIRTSNELAQQLILEMKDYKQEHLICIYLD 134
>gi|86606346|ref|YP_475109.1| DNA repair protein RadC [Synechococcus sp. JA-3-3Ab]
gi|86554888|gb|ABC99846.1| DNA repair protein RadC [Synechococcus sp. JA-3-3Ab]
Length = 243
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 6/128 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALLK----RFATLGGVFGA 76
+R R+R L +G +L++ E+L ++L P K +A+ LLK + L +
Sbjct: 15 DRPRERLLSQGAKSLSHAELLAILLNTGQGPGKLSAVGLAQLLLKTLEAQGDPLAQLRQV 74
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L +I IG A + +RI A + + + +++ +
Sbjct: 75 EAGELLQIEGIGPAKAATVLAAIELGRRIFLARPPERTVIESPEQAAMALSGDLMWEPQE 134
Query: 137 NFAYCFSI 144
+FA
Sbjct: 135 HFAVLHLD 142
>gi|225019208|ref|ZP_03708400.1| hypothetical protein CLOSTMETH_03161 [Clostridium methylpentosum
DSM 5476]
gi|224948060|gb|EEG29269.1| hypothetical protein CLOSTMETH_03161 [Clostridium methylpentosum
DSM 5476]
Length = 226
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 54/128 (42%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ H RLR RF+Q+G ++ + LEL+LF IPR DT +A LL F + GV A
Sbjct: 6 HDKHRQRLRKRFVQEGLDSFEVHNALELLLFNSIPRGDTNELAHILLDTFGSFSGVLDAD 65
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L ++ +G+R A L+L+ + ++ K + + +
Sbjct: 66 HDNLLKVKGVGERTATLLELIPELCRLYMEDKAKPHKTYNTTEALCDLFIPKFIGRTQEC 125
Query: 138 FAYCFSIN 145
N
Sbjct: 126 VYAACFDN 133
>gi|325280908|ref|YP_004253450.1| DNA repair protein RadC [Odoribacter splanchnicus DSM 20712]
gi|324312717|gb|ADY33270.1| DNA repair protein RadC [Odoribacter splanchnicus DSM 20712]
Length = 238
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 2/121 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAPLHLLQ- 82
R++ L KG AL+ E+ ++L + + +A+ +L L + + L
Sbjct: 17 PREKLLTKGVAALSVSELFAILLRSGVGGETALELARRILADNNNDLNQLARRSVRELIN 76
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G A + +R +K + + + + F +
Sbjct: 77 KYKGVGMAKATAIVAAIEIGRRRRPETKRMKSVIRFSREAYRYIRSFIEDLDHEEFWVIY 136
Query: 143 S 143
Sbjct: 137 L 137
>gi|145630048|ref|ZP_01785830.1| DNA repair protein RadC [Haemophilus influenzae R3021]
gi|144984329|gb|EDJ91752.1| DNA repair protein RadC [Haemophilus influenzae R3021]
Length = 105
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 43/102 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L G AL+ YE+L + L I S++K +L F +L + A +
Sbjct: 2 PREKLLAFGAKALSDYELLAIFLRTGIKDCPVMSLSKNVLTHFGSLHALLSADKKAFCSV 61
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
+G ++L+ ++ ++R LK + + +
Sbjct: 62 KGLGITQFIQLQAITEMTKRYLKQEMLSTPIINDLETVKLFF 103
>gi|160880508|ref|YP_001559476.1| DNA repair protein RadC [Clostridium phytofermentans ISDg]
gi|160429174|gb|ABX42737.1| DNA repair protein RadC [Clostridium phytofermentans ISDg]
Length = 232
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF---GAPLH 79
R ++ + G AL+ E++ +IL + +A +L T G+
Sbjct: 14 ERPYEKCERDGAAALSDAELIAVILRTGSKETRSTELAAKILSYSNTYPGLRGISRMTQK 73
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
I+ IG+ A++L ++ S R+ KA ++ T +
Sbjct: 74 DFMSIHGIGRVKAIQLLCLTELSIRMAKATFADGIRYTDPSSVAEYYMQDMRSLKTEQSR 133
Query: 140 YCFSI 144
Sbjct: 134 LLMFD 138
>gi|238018938|ref|ZP_04599364.1| hypothetical protein VEIDISOL_00798 [Veillonella dispar ATCC 17748]
gi|237864422|gb|EEP65712.1| hypothetical protein VEIDISOL_00798 [Veillonella dispar ATCC 17748]
Length = 232
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 2/123 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
R R++FL G + +A E+L ++L + + S+A +++ F + G+ + L
Sbjct: 15 QRPREKFLTLGPSHMAMEELLAILLRTGVKGQSAISLANDIVQSFDDGVYGLNRMTVEEL 74
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSI-KKFLTPGQPCLISVERHYPMKNANNFAY 140
+I IG A+ L +R+ + + + V + +
Sbjct: 75 VKIKGIGTDKAVTLCAALEMGRRLGELKIKETYEDFSQPFVIAQYVMERLRHEEVEHVWA 134
Query: 141 CFS 143
Sbjct: 135 AML 137
>gi|157363305|ref|YP_001470072.1| DNA repair protein RadC [Thermotoga lettingae TMO]
gi|157313909|gb|ABV33008.1| DNA repair protein RadC [Thermotoga lettingae TMO]
Length = 225
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 2/127 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAPLHLL 81
+ R+R L+ G L+ E++ ++L K +A LL F +L + A + +
Sbjct: 1 MKPRERMLKIGSEGLSKEELIAILLRTGTRGKGVLELANELLHSFNSSLKMLANAEIEEI 60
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
++ +G A +K +R+ + + L +
Sbjct: 61 ASVDGVGIAKAASIKAALELGKRLYRELSDNRILLDKPESVYEYCH-EMRFFEKEVLRVI 119
Query: 142 FSINIIF 148
+ +F
Sbjct: 120 LLDSKLF 126
>gi|331091135|ref|ZP_08339977.1| hypothetical protein HMPREF9477_00620 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405357|gb|EGG84893.1| hypothetical protein HMPREF9477_00620 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 231
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 51/137 (37%), Gaps = 3/137 (2%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK---RF 67
S+ + + R ++ + G ++L E+L ++L ++ +A+ +L +
Sbjct: 2 SQTKKIKDMLEEERPYEKCERLGVSSLTDIELLAVLLRNGAINSNSLELARRILYPLNQR 61
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
L + L L++I+ IG+ AL++ + S+R+ KA+ +
Sbjct: 62 GGLINLHQYSLAQLKKIHGIGRVKALQIVCIVELSRRLSKASAIKGLDFSSAAKIAEYYM 121
Query: 128 RHYPMKNANNFAYCFSI 144
+
Sbjct: 122 EDLRHHQQEHMKLLMLN 138
>gi|317484766|ref|ZP_07943665.1| DNA repair protein RadC [Bilophila wadsworthia 3_1_6]
gi|316923973|gb|EFV45160.1| DNA repair protein RadC [Bilophila wadsworthia 3_1_6]
Length = 226
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
Y GH RLR+R L+ ALA YEILEL+L + R+DTK +AK LL RF ++
Sbjct: 2 STDTPHYAGHRARLRERLLKD-STALADYEILELLLGYALLRRDTKPLAKELLSRFGSIR 60
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
GV A +Q+++ +G+ VA L+ R +A +K L + V
Sbjct: 61 GVLDALPAEMQQVDGVGEGVAALRLLLREMMARYAEAPMRERKVLCTPRDVAQMVIPRLS 120
Query: 132 MKNANNFA 139
Sbjct: 121 GSPHEELW 128
>gi|228470139|ref|ZP_04055048.1| DNA repair protein RadC [Porphyromonas uenonis 60-3]
gi|228308277|gb|EEK17132.1| DNA repair protein RadC [Porphyromonas uenonis 60-3]
Length = 267
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 10/144 (6%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FAT 69
S + + +R R++ L+ G L+ E+L + + + +AK ++
Sbjct: 17 STKTTIKQWSEEDRPREKLLRLGARHLSDAELLAIFINSGTEKDSALDLAKQIMTGLDND 76
Query: 70 LGGVFGAPLHLLQ---------EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
LG + L +G A + +R+ + +T
Sbjct: 77 LGQLLEIDHAYLTGCEPGEKKKRFAGLGDARACTILAAIELGRRLRDTPPPRRTPITCSL 136
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
+ RH + +
Sbjct: 137 DAYRVLRRHLESLDHEELRCLYLD 160
>gi|237736936|ref|ZP_04567417.1| DNA repair protein radC [Fusobacterium mortiferum ATCC 9817]
gi|229420798|gb|EEO35845.1| DNA repair protein radC [Fusobacterium mortiferum ATCC 9817]
Length = 225
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
Y GH R+R ++LQ G +A YEILEL+L IP KDTK IAK L+++F L GV A
Sbjct: 4 KYKGHRERIRQKYLQGGYSAFLEYEILELLLTYAIPIKDTKPIAKELIEKFGNLDGVVMA 63
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNA 135
+ L + I + A+ LKL+ S+ + + + L + L + +
Sbjct: 64 SIDELMSVKGIKQNSAIFLKLLGDTSKYLYRGDMKRDGIQLRDKESLLKYLRSDIGFSSR 123
Query: 136 NNFAYCFSIN 145
F F N
Sbjct: 124 EEFKVIFLNN 133
>gi|34540659|ref|NP_905138.1| DNA repair protein RadC [Porphyromonas gingivalis W83]
gi|81417483|sp|Q7MVX9|Y894_PORGI RecName: Full=UPF0758 protein PG_0894
gi|34396973|gb|AAQ66037.1| DNA repair protein RadC [Porphyromonas gingivalis W83]
Length = 227
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 44/124 (35%), Gaps = 2/124 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
+R R++ ++ G L E+L +++ R+ +A+ +L + +L + + L
Sbjct: 10 DRPREKMIRLGARCLTDAELLAILIGSGNDRQTAIQLAQEILAKMDNSLPRLAKCDIQEL 69
Query: 82 Q-EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
+G A+ + S+RI ++ +T + ++
Sbjct: 70 TGSFRGMGPAKAVTVMAAMELSRRIPSQEMPRRESITDSRMAYRTISPFLTDLPQEEMWV 129
Query: 141 CFSI 144
Sbjct: 130 LLLN 133
>gi|257897231|ref|ZP_05676884.1| DNA repair protein RadC [Enterococcus faecium Com12]
gi|293378003|ref|ZP_06624181.1| DNA repair protein RadC [Enterococcus faecium PC4.1]
gi|293570378|ref|ZP_06681435.1| DNA repair protein RadC [Enterococcus faecium E980]
gi|257833796|gb|EEV60217.1| DNA repair protein RadC [Enterococcus faecium Com12]
gi|291609556|gb|EFF38821.1| DNA repair protein RadC [Enterococcus faecium E980]
gi|292643368|gb|EFF61500.1| DNA repair protein RadC [Enterococcus faecium PC4.1]
Length = 230
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G AL+ E+L ++L SIA LLK F L + A LH L+EI
Sbjct: 15 PRERMEIYGAEALSDQELLAILLRTGQHPHSVMSIAGNLLKTFGGLASLRQATLHELEEI 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI + + + +
Sbjct: 75 RGIGRVKAIEIKALIELGRRIQTDQERAAPAIRTSHELAQQLILEMKDYKQEHLICIYLD 134
>gi|188994910|ref|YP_001929162.1| putative DNA repair protein [Porphyromonas gingivalis ATCC 33277]
gi|188594590|dbj|BAG33565.1| putative DNA repair protein [Porphyromonas gingivalis ATCC 33277]
Length = 230
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 44/124 (35%), Gaps = 2/124 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
+R R++ ++ G L E+L +++ R+ +A+ +L + +L + + L
Sbjct: 13 DRPREKMIRLGARCLTDAELLAILIGSGNDRQTAIQLAQEILAKMDNSLPRLAKCDIQEL 72
Query: 82 Q-EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
+G A+ + S+RI ++ +T + ++
Sbjct: 73 TGSFRGMGPAKAVTVMAAMELSRRIPSQEMPRRESITDSRMAYRTISPFLTDLPQEEMWV 132
Query: 141 CFSI 144
Sbjct: 133 LLLN 136
>gi|319892706|ref|YP_004149581.1| DNA repair protein RadC [Staphylococcus pseudintermedius HKU10-03]
gi|317162402|gb|ADV05945.1| DNA repair protein RadC [Staphylococcus pseudintermedius HKU10-03]
Length = 227
Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ ++R +Q G AL+ E+L +I+ + + +A +L + +L + L L+
Sbjct: 11 EKPKERLIQFGSQALSNTELLAIIINTGSKGRSSIQVASHILAQCQSLTALRKMSLVELE 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSI-KKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ IG+ A L V S+R+ + + + + +F
Sbjct: 71 KFVGIGRNKATTLLAVFELSRRLAEDKKQYLSDPIHSPSQIAERYYAKFKDYDQEHFVLL 130
Query: 142 FSI 144
Sbjct: 131 ILN 133
>gi|329117353|ref|ZP_08246070.1| DNA repair protein RadC [Streptococcus parauberis NCFD 2020]
gi|326907758|gb|EGE54672.1| DNA repair protein RadC [Streptococcus parauberis NCFD 2020]
Length = 226
Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + G L+ E+L ++L K ++ +L L L LQ++
Sbjct: 13 PRERLVSLGAEMLSNQELLAILLRTGNKEKPVMELSAHILSGLDKLSDFKKLSLQELQQL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IGK ++E+K + + RI + I+ L + R K + +
Sbjct: 73 AGIGKVKSIEIKAMIELANRIQASEEKIEGQLLSSHQVAQRMIRLLGEKKQEHLMTIYLD 132
>gi|254409756|ref|ZP_05023537.1| DNA repair protein RadC [Microcoleus chthonoplastes PCC 7420]
gi|196183753|gb|EDX78736.1| DNA repair protein RadC [Microcoleus chthonoplastes PCC 7420]
Length = 243
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 39/129 (30%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRK--DTKSIAKALLK-----RFATLGGVFG 75
R R+R + G LA E++ ++L + + + +L+ + +
Sbjct: 14 ERPRERLMAIGAKNLATAELIAILLATGQGKGKLSAVGLGQYILQQLSQDERDPMAVLRD 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L I+ +G A + +R ++ + + + +
Sbjct: 74 ISPQELMRIHGVGPAKATTMLAAIELGKRAFQSRPTEGTIIDSPMAAAAAFSHELMWQTQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 ERFAVLLLD 142
>gi|284035456|ref|YP_003385386.1| DNA repair protein RadC [Spirosoma linguale DSM 74]
gi|283814749|gb|ADB36587.1| DNA repair protein RadC [Spirosoma linguale DSM 74]
Length = 231
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATLGGVFGAP 77
+R R++ + KG+ AL+ E++ ++L +AK +LK L +
Sbjct: 12 WAEEDRPREKLMLKGKAALSEAELIAILLNSGTVDLTAVDVAKIILKSVNNNLNDLAKLS 71
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ L + IG+ A+ + +R + + + +T + + H K
Sbjct: 72 IKDLSKFRGIGEARAITIIAALELGRRRKEQDRPQRARVTCSRDAYNEMIPHLIDKPHEE 131
Query: 138 FAYCFSI 144
F
Sbjct: 132 FWILLMN 138
>gi|282881095|ref|ZP_06289782.1| putative DNA repair protein RadC [Prevotella timonensis CRIS 5C-B1]
gi|281304899|gb|EFA96972.1| putative DNA repair protein RadC [Prevotella timonensis CRIS 5C-B1]
Length = 259
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 42/144 (29%), Gaps = 2/144 (1%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
E+ P + S + +R R++ + G +AL+ E+L +++ + + K
Sbjct: 23 EEEATPPIPERLSIVH-WAEADRPREKMERLGASALSPAELLAILIGSGSVDESAVDLMK 81
Query: 62 ALLKRFATLGGVF-GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
LL + L IG A+ + +R + L+
Sbjct: 82 RLLNDCNNNLNTLGKQTIQELTNYKGIGPAKAITILAACELGKRRAMEKAEERADLSSAL 141
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
+ +
Sbjct: 142 AIYEYMHPRMQDLDVEEAWILLMN 165
>gi|115352599|ref|YP_774438.1| DNA repair protein RadC [Burkholderia ambifaria AMMD]
gi|122322429|sp|Q0BCL9|Y2548_BURCM RecName: Full=UPF0758 protein Bamb_2548
gi|115282587|gb|ABI88104.1| DNA replication and repair protein RadC [Burkholderia ambifaria
AMMD]
Length = 258
Score = 94.6 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 1/121 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAPLHLLQE 83
R+R L++G AL E++ L+L +D + A+ALL RF +L + A +
Sbjct: 45 PRERLLERGPAALTDAELIALLLGTGGGGRDVFASARALLARFGDSLRDMLDAEPDVFAT 104
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
IG + L V+ +R L + + + + F +
Sbjct: 105 HPGIGTARSAVLIAVTEIVRRALVEKARERLQIDSPGAVEDYLRLRIGTRPHEVFVTLYL 164
Query: 144 I 144
Sbjct: 165 D 165
>gi|257899232|ref|ZP_05678885.1| DNA repair protein RadC [Enterococcus faecium Com15]
gi|257837144|gb|EEV62218.1| DNA repair protein RadC [Enterococcus faecium Com15]
Length = 230
Score = 94.6 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G AL+ E+L ++L SIA LLK F L + A LH L+EI
Sbjct: 15 PRERMEIYGAEALSDQELLAILLRTGQHPHSVMSIAGNLLKTFGGLASLRQATLHELEEI 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI + + + +
Sbjct: 75 RGIGRVKAIEIKALIELGRRIQTDQERASPAIRTSYELAQQLILEMKDHKQEHLICIYLD 134
>gi|282850526|ref|ZP_06259905.1| putative DNA repair protein RadC [Veillonella parvula ATCC 17745]
gi|282580019|gb|EFB85423.1| putative DNA repair protein RadC [Veillonella parvula ATCC 17745]
Length = 232
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
R R++FL G + +A E+L ++L + + S+A +++ F + G+ + L
Sbjct: 15 QRPREKFLALGPSHMAMEELLAILLRTGVKGQSAISLASDIVQSFDDGVYGLNRMTVDNL 74
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSI-KKFLTPGQPCLISVERHYPMKNANNFAY 140
+I IG+ A+ L +R+ + + + V ++ +
Sbjct: 75 TKIKGIGRDKAVTLCAALEMGRRLGELKIKETYEDFSQPFVIAQYVMERLRHEDVEHVWA 134
Query: 141 CFS 143
Sbjct: 135 AML 137
>gi|46579604|ref|YP_010412.1| DNA repair protein RadC [Desulfovibrio vulgaris str. Hildenborough]
gi|120602908|ref|YP_967308.1| DNA repair protein RadC [Desulfovibrio vulgaris DP4]
gi|46449019|gb|AAS95671.1| DNA repair protein RadC [Desulfovibrio vulgaris str. Hildenborough]
gi|120563137|gb|ABM28881.1| DNA repair protein RadC [Desulfovibrio vulgaris DP4]
gi|311233408|gb|ADP86262.1| DNA repair protein RadC [Desulfovibrio vulgaris RCH1]
Length = 225
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Query: 13 DSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
Y GH RLR+R G L YE+LEL+L ++ R+DTK +AK LL RF +L G
Sbjct: 2 SDKPHYHGHRERLRERLRVDG-TGLRDYELLELLLGTVVLRRDTKPLAKELLHRFGSLRG 60
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
V A L + G + L+ R ++ +K L Q
Sbjct: 61 VLDARTPELLSVKGFGPGLLDYWLLLRECMARYEESPARERKVLCTPQSVAEMARMRLGN 120
Query: 133 KNANNFAYCFSIN 145
N
Sbjct: 121 CPHEEVWVALLDN 133
>gi|239623991|ref|ZP_04667022.1| DNA repair protein RadC [Clostridiales bacterium 1_7_47_FAA]
gi|239522022|gb|EEQ61888.1| DNA repair protein RadC [Clostridiales bacterium 1_7_47FAA]
Length = 231
Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 14/148 (9%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
+E RM PS +R ++ L G L E+L +I+ + +A
Sbjct: 1 MERIRMKDLPSV----------DRPYEKCLCFGPGVLTDAELLAVIIRTGSRDHSSLDLA 50
Query: 61 KALL---KRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANW-SIKKFL 116
LL L G+ L+ +I +GK ++L + S+RI K +
Sbjct: 51 GKLLALGSPGDGLLGLLHHSLNDFMKIKGVGKVKGVQLLCIGELSRRIWKKQTGINRISF 110
Query: 117 TPGQPCLISVERHYPMKNANNFAYCFSI 144
F
Sbjct: 111 EHPSQISDYYMEDMRHLEQEEIRVMFLN 138
>gi|160943191|ref|ZP_02090427.1| hypothetical protein FAEPRAM212_00677 [Faecalibacterium prausnitzii
M21/2]
gi|158445430|gb|EDP22433.1| hypothetical protein FAEPRAM212_00677 [Faecalibacterium prausnitzii
M21/2]
gi|295105228|emb|CBL02772.1| DNA repair proteins [Faecalibacterium prausnitzii SL3/3]
Length = 239
Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 51/120 (42%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH R+R+R G ++LA +E LE +L+ ++DT IA L+ RF V A
Sbjct: 7 HKGHRQRMRERVQSYGLDSLAEHEALEYVLYLTNAQRDTNGIAHDLIDRFGDFAAVLEAS 66
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L + +G A L L+ S+ ++ S + + + + + +
Sbjct: 67 EEELCTVEGVGPSTARMLHLLPQISRYYGRSRTSTTRCIKTTEQMGSYLMAKFAWSDYER 126
>gi|257879529|ref|ZP_05659182.1| DNA repair protein RadC [Enterococcus faecium 1,230,933]
gi|257883463|ref|ZP_05663116.1| DNA repair protein RadC [Enterococcus faecium 1,231,502]
gi|257894826|ref|ZP_05674479.1| DNA repair protein RadC [Enterococcus faecium 1,231,408]
gi|261209045|ref|ZP_05923449.1| DNA repair protein RadC [Enterococcus faecium TC 6]
gi|289566560|ref|ZP_06446982.1| DNA repair protein RadC [Enterococcus faecium D344SRF]
gi|257813757|gb|EEV42515.1| DNA repair protein RadC [Enterococcus faecium 1,230,933]
gi|257819121|gb|EEV46449.1| DNA repair protein RadC [Enterococcus faecium 1,231,502]
gi|257831205|gb|EEV57812.1| DNA repair protein RadC [Enterococcus faecium 1,231,408]
gi|260076957|gb|EEW64680.1| DNA repair protein RadC [Enterococcus faecium TC 6]
gi|289161659|gb|EFD09537.1| DNA repair protein RadC [Enterococcus faecium D344SRF]
Length = 223
Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G AL+ E+L ++L SIA LLK F L + A LH L+EI
Sbjct: 15 PRERMEIYGAEALSDQELLAILLRTGQHPYSVMSIAGNLLKTFGGLASLRQATLHELEEI 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI + + + + +
Sbjct: 75 RGIGRVKAIEIKALIELGRRIQTDHERAAPPVRTSYELAQQLILEMKDHKQEHLVCIYLD 134
>gi|269798288|ref|YP_003312188.1| DNA repair protein RadC [Veillonella parvula DSM 2008]
gi|294794018|ref|ZP_06759155.1| DNA repair protein RadC [Veillonella sp. 3_1_44]
gi|269094917|gb|ACZ24908.1| DNA repair protein RadC [Veillonella parvula DSM 2008]
gi|294455588|gb|EFG23960.1| DNA repair protein RadC [Veillonella sp. 3_1_44]
Length = 232
Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
R R++FL G + +A E+L ++L + + S+A +++ F + G+ + L
Sbjct: 15 QRPREKFLALGPSHMAMEELLAILLRTGVKGQSAISLASDIVQSFDDGVYGLNRMTVDNL 74
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSI-KKFLTPGQPCLISVERHYPMKNANNFAY 140
+I IG+ A+ L +R+ + + + V ++ +
Sbjct: 75 IKIKGIGRDKAVTLCAALEMGRRLGELKIKETYEDFSQPFVIAQYVMERLRHEDVEHVWA 134
Query: 141 CFS 143
Sbjct: 135 AML 137
>gi|220907196|ref|YP_002482507.1| DNA repair protein RadC [Cyanothece sp. PCC 7425]
gi|254789645|sp|B8HRF8|Y1778_CYAP4 RecName: Full=UPF0758 protein Cyan7425_1778
gi|219863807|gb|ACL44146.1| DNA repair protein RadC [Cyanothece sp. PCC 7425]
Length = 243
Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 42/129 (32%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIP--RKDTKSIAKALLKRFATLGG-----VFG 75
+R R++ L +G L E++ ++L + + + +L++ +
Sbjct: 14 DRPREKLLAQGARYLTSAELIAILLGTGQGAGKLSAIGLGQYILQQLGQHQRDPLAVLRE 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L I IG A + +R+ ++ + + + ++ +
Sbjct: 74 ITPQELMAIPGIGPAKATTILAAIELGKRVFQSKPTEQTIINDPAVAAAALGSELFWQAQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 EKFAVLLLD 142
>gi|146320931|ref|YP_001200642.1| DNA repair protein RadC [Streptococcus suis 98HAH33]
gi|229485571|sp|A4W1K3|Y1084_STRS2 RecName: Full=UPF0758 protein SSU98_1084
gi|145691737|gb|ABP92242.1| putative DNA repair protein [Streptococcus suis 98HAH33]
Length = 246
Score = 93.9 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G L+ E+L + + ++ ++ LL R +L + + LQ +
Sbjct: 13 PRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI ++ + + + + + K + +
Sbjct: 73 TGIGRVKAIEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLN 132
>gi|284050050|ref|ZP_06380260.1| DNA repair protein RadC [Arthrospira platensis str. Paraca]
gi|291565709|dbj|BAI87981.1| DNA repair protein RadC [Arthrospira platensis NIES-39]
Length = 243
Score = 93.9 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 44/129 (34%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIP--RKDTKSIAKALL-----KRFATLGGVFG 75
R R+R + G +L+ E++ ++L + + + + +L L +
Sbjct: 14 ERPRERLMAFGPQSLSTAELIAILLGTGQGAGKLSSVGLGQYILKELSQCEEDPLSVMRN 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L +I+ +G A + +R+ + + Q ++ + +
Sbjct: 74 VGVGELTKIHGVGPAKATTIIAAIELGKRVFLSKPPELTVIDSPQAAANALSHNLMWQTQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 ERFAILLMD 142
>gi|218439039|ref|YP_002377368.1| DNA repair protein RadC [Cyanothece sp. PCC 7424]
gi|226736619|sp|B7KF44|Y2073_CYAP7 RecName: Full=UPF0758 protein PCC7424_2073
gi|218171767|gb|ACK70500.1| DNA repair protein RadC [Cyanothece sp. PCC 7424]
Length = 243
Score = 93.9 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALLKRFATLGG-----VFG 75
R R+R L G +L+ E+L ++L K + + +LK + +
Sbjct: 14 ERPRERLLSLGAQSLSNAELLAILLATGQGKGKLSAVGLGQHILKELSQHKRDPLDVLRD 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L I IG A + +R + K + + ++ +N
Sbjct: 74 MSPQELMNIPGIGPAKATTILAAIELGKRAFQLRPMEKVEINDPVSAVAALSHDLMWQNQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 ERFAIVLLN 142
>gi|261367039|ref|ZP_05979922.1| DNA repair protein RadC [Subdoligranulum variabile DSM 15176]
gi|282571158|gb|EFB76693.1| DNA repair protein RadC [Subdoligranulum variabile DSM 15176]
Length = 244
Score = 93.9 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 55/134 (41%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
+ + H R++ R + G ++LA +E LE +LF IPR+DT +A L++ F
Sbjct: 4 NKARPLHEKHRARMQVRVERDGLDSLAEHEALEYLLFLAIPRQDTNELAHRLIQHFGDFC 63
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
V A L+++ IG++ A + V+ + + L + + V+ +
Sbjct: 64 KVMEADPEELKQVKGIGEKSARLISTVTAFGRYYALKKRKHRVALNHTEAAVEYVKPLFL 123
Query: 132 MKNANNFAYCFSIN 145
+
Sbjct: 124 GLQNELLYLILLDD 137
>gi|254501417|ref|ZP_05113568.1| DNA repair protein RadC [Labrenzia alexandrii DFL-11]
gi|222437488|gb|EEE44167.1| DNA repair protein RadC [Labrenzia alexandrii DFL-11]
Length = 228
Score = 93.9 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 52/123 (42%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+LR R + G +AL EI+ L+L L + ++IA+ LL F +L + AP H L
Sbjct: 13 KEQLRFRCREVGPDALTDLEIITLLLVPLYRWEHAETIAQRLLSEFQSLPELLNAPRHRL 72
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
E + +G +A L + R +A + ++ L + ++ F
Sbjct: 73 LEFSGVGPVLADTLSAIRQCIVRSARAEITERRVLDCWSEVIDYIQATMGYLEIEQFRCL 132
Query: 142 FSI 144
F
Sbjct: 133 FLN 135
>gi|21910313|ref|NP_664581.1| DNA repair protein RadC [Streptococcus pyogenes MGAS315]
gi|21904509|gb|AAM79384.1| putative DNA repair protein [Streptococcus pyogenes MGAS315]
Length = 209
Score = 93.9 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 44/116 (37%)
Query: 30 LQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGK 89
++ G +L+ E+L ++L K ++ LL +L L LQ + IGK
Sbjct: 1 MRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGK 60
Query: 90 RVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
A+E+K + RIL + ++ + + K + + N
Sbjct: 61 VKAIEIKAMIELVSRILATDKTLTDSVLTSVQVAEKIMAALGDKKQEHLVVLYLDN 116
>gi|288957329|ref|YP_003447670.1| DNA repair protein [Azospirillum sp. B510]
gi|288909637|dbj|BAI71126.1| DNA repair protein [Azospirillum sp. B510]
Length = 249
Score = 93.5 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 7 SKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR 66
++ +D Y+ H +RLR RFL +G +AL YE+LE++LF + PR++ + +AK L++
Sbjct: 13 AEEGVEDGDPHYLDHRDRLRRRFLDRGADALEDYELLEMVLFAVSPRRNVRPLAKLLIRT 72
Query: 67 FATLGGVFGAPLHLLQEINRIG-----KRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
F L GV AP L+ + G +++V A+ R L+ + L Q
Sbjct: 73 FGDLWGVVNAPPERLRGLKADGVSLGTDNAVASVRIVGAAALRALRQRVIDRPALASWQA 132
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 133 LIDYCSAAMAHEPTEQFRLLFLD 155
>gi|315924133|ref|ZP_07920359.1| DNA repair protein RadC [Pseudoramibacter alactolyticus ATCC 23263]
gi|315622535|gb|EFV02490.1| DNA repair protein RadC [Pseudoramibacter alactolyticus ATCC 23263]
Length = 256
Score = 93.5 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 5/127 (3%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHL 80
++ R++ + G ++ E++ +I+ R +A+ LL + L ++ A +
Sbjct: 34 DDKPREKMMAHGAKTMSSAELIAIIIGSGERRVTAVDLARKLLHAYDDDLNRLYQASVSE 93
Query: 81 LQE---INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
L + IG A ++K RI + + + +
Sbjct: 94 LCNDQVLKGIGVAKACKIKAALELGHRIQR-RPDHFPVVKNPDDVAAFLNEVIWDIRREH 152
Query: 138 FAYCFSI 144
F
Sbjct: 153 FFVLLLD 159
>gi|297621459|ref|YP_003709596.1| DNA repair protein radC family [Waddlia chondrophila WSU 86-1044]
gi|297376760|gb|ADI38590.1| DNA repair protein radC family [Waddlia chondrophila WSU 86-1044]
Length = 231
Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R + G +AL+ E+L +IL ++K L+ RF L + A + L
Sbjct: 10 EKPRERLQRLGADALSSTELLAVILGCGTRGCSVLELSKELIARFGGLRHLADATIEELL 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++ +G A++LK +R + + + V+ +
Sbjct: 70 QMRGVGTAQAIKLKAAFSLGKRAYHPGQLRRYRVQTPEHAYAYVKDFLLQETKEVLISLL 129
Query: 143 SI 144
Sbjct: 130 LD 131
>gi|16331325|ref|NP_442053.1| DNA repair protein RadC [Synechocystis sp. PCC 6803]
gi|1710004|sp|P52601|Y766_SYNY3 RecName: Full=UPF0758 protein sll0766
gi|1001498|dbj|BAA10123.1| RadC protein [Synechocystis sp. PCC 6803]
Length = 243
Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 7/133 (5%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRK--DTKSIAKALLKRFATLGG---- 72
+ R R++ L+ G L E++ ++L + + + +L++
Sbjct: 10 LPEDERPREKLLKYGAKHLGNAELIAILLATGQGKGKLSAVGLGQYILQQLGQNRQDPMD 69
Query: 73 -VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
+ L IG A + +R+ ++ K + + I++ +
Sbjct: 70 VLRNIHPQELIAFPGIGPAKATTILAAVELGKRVFQSRPLEKMVVDSPEAAAIALSQDLM 129
Query: 132 MKNANNFAYCFSI 144
+ +FA
Sbjct: 130 WQTQEHFAIVMLD 142
>gi|160902910|ref|YP_001568491.1| DNA repair protein RadC [Petrotoga mobilis SJ95]
gi|160360554|gb|ABX32168.1| DNA repair protein RadC [Petrotoga mobilis SJ95]
Length = 222
Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 2/122 (1%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
+ R++ + G +L E++ +IL + + +++ +LK++ TL + L + +
Sbjct: 6 KPREKLEKYGPQSLTDQELIAIILRHGVRNYNVFDVSEQILKKYKTLSELVDISLEEISK 65
Query: 84 INRIGKRVALELKLVSVASQRILKANWSI-KKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+GK A+ LK +R + +T + + F
Sbjct: 66 EKGVGKVGAINLKAALEIGKRYHLQKLRQKYQKVTSPEEAYHVC-EDMIYLSTETVRAIF 124
Query: 143 SI 144
Sbjct: 125 LD 126
>gi|294792153|ref|ZP_06757301.1| DNA repair protein RadC [Veillonella sp. 6_1_27]
gi|294457383|gb|EFG25745.1| DNA repair protein RadC [Veillonella sp. 6_1_27]
Length = 232
Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 2/123 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
R R++FL G + +A E+L ++L + S+A +++ F + G+ + L
Sbjct: 15 QRPREKFLALGPSHMAMEELLAILLRTGGKGQSAISLASDIVQSFDDGVYGLNRMTVDNL 74
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSI-KKFLTPGQPCLISVERHYPMKNANNFAY 140
+I IG+ A+ L +R+ + + + V ++ +
Sbjct: 75 IKIKGIGRDKAVTLCAALEMGRRLGELKIKETYEDFSQPFVIAQYVMERLRHEDVEHVWA 134
Query: 141 CFS 143
Sbjct: 135 AML 137
>gi|302344315|ref|YP_003808844.1| DNA repair protein RadC [Desulfarculus baarsii DSM 2075]
gi|301640928|gb|ADK86250.1| DNA repair protein RadC [Desulfarculus baarsii DSM 2075]
Length = 241
Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 49/125 (39%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLRD+FL G E LEL+L PR+D K A+ LL L V AP
Sbjct: 10 GHRQRLRDKFLAHGLAKFTDEEALELLLTLATPRQDCKQQARTLLGELGGLQAVLDAPAE 69
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L ++ +G + L LKLV ++R L+ + + + F
Sbjct: 70 RLAQVKGVGPKNVLGLKLVPAVARRYLEDKLLRGEAFLAAEQAAEYLRMGMQSLEREVFR 129
Query: 140 YCFSI 144
Sbjct: 130 VMLLD 134
>gi|255994109|ref|ZP_05427244.1| DNA repair protein RadC [Eubacterium saphenum ATCC 49989]
gi|255993777|gb|EEU03866.1| DNA repair protein RadC [Eubacterium saphenum ATCC 49989]
Length = 230
Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA--TLGGVFGAPLHLLQ 82
R+R ++KG AL+ E++ +IL K ++ A+L+ + + L L
Sbjct: 10 PRERLIEKGVEALSMAELIAIILSTGGKNKTVTELSHAILESKDRLGITSLCELDLEDLM 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
N IG+ A+ L +R + + +IK+ + + + NF
Sbjct: 70 NFNGIGEAKAMRLIAALELGKRQSEISVNIKRKIGNPEAIFHLFHEKLRYEKKENFYAVM 129
Query: 143 SI 144
Sbjct: 130 LN 131
>gi|119510185|ref|ZP_01629323.1| DNA repair protein RadC [Nodularia spumigena CCY9414]
gi|119465135|gb|EAW46034.1| DNA repair protein RadC [Nodularia spumigena CCY9414]
Length = 243
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 7/130 (5%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALL-----KRFATLGGVF 74
R R+R + G LA E++ ++L P K + + LL + L +
Sbjct: 13 DERPRERLMTHGPKILATAELIAILLGTGQGPGKLSAVGLGQYLLQELSKHQRDPLAVLR 72
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
L +I IG A + +R + S + ++ + +
Sbjct: 73 EVTPAELMQIPGIGPAKATTILAAIELGKRTFQFRPSDSTPIDNPIVAAAALSQDLMWQT 132
Query: 135 ANNFAYCFSI 144
FA
Sbjct: 133 QERFAVLLLD 142
>gi|254423586|ref|ZP_05037304.1| DNA repair protein RadC [Synechococcus sp. PCC 7335]
gi|196191075|gb|EDX86039.1| DNA repair protein RadC [Synechococcus sp. PCC 7335]
Length = 260
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 9/131 (6%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRK--DTKSIAKALLKRFA-------TLGGV 73
R R+R L G L+ E++ ++L R + LL+ L +
Sbjct: 31 ERPRERLLAYGAKRLSAAELIAIMLGTGQGRGKLSAVGLGHFLLQELGKEHPEGDGLPIL 90
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
L +I+ +G A + +R+L++ + ++ +
Sbjct: 91 RNITAEELMKISGVGPAKAATILAAIELGRRVLQSQPPSMTVVDDPSVAAAALSHELMWQ 150
Query: 134 NANNFAYCFSI 144
FA
Sbjct: 151 LQERFAVLLLD 161
>gi|293557235|ref|ZP_06675783.1| DNA repair protein RadC [Enterococcus faecium E1039]
gi|291600599|gb|EFF30903.1| DNA repair protein RadC [Enterococcus faecium E1039]
Length = 230
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G AL+ E+L ++L SIA LLK F L + A LH L+EI
Sbjct: 15 PRERMEIYGAEALSDQELLAILLRTGQHPYSVMSIAGNLLKTFGGLASLRQATLHELEEI 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI + + + + +
Sbjct: 75 RGIGRVKAIEIKALIELGRRIQTDHERATPPVRTSYELAQQLILEMKDHKQEHLVCIYLD 134
>gi|69246244|ref|ZP_00603857.1| DNA repair protein RadC [Enterococcus faecium DO]
gi|68195345|gb|EAN09794.1| DNA repair protein RadC [Enterococcus faecium DO]
Length = 226
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G AL+ E+L ++L SIA LLK F L + A LH L+EI
Sbjct: 11 PRERMEIYGAEALSDQELLAILLRTGQHPYSVMSIAGNLLKTFGGLASLRQATLHELEEI 70
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI + + + + +
Sbjct: 71 RGIGRVKAIEIKALIELGRRIQTDHERAAPPVRTSYELAQQLILEMKDHKQEHLVCIYLD 130
>gi|289424005|ref|ZP_06425794.1| DNA repair protein RadC [Peptostreptococcus anaerobius 653-L]
gi|289155580|gb|EFD04256.1| DNA repair protein RadC [Peptostreptococcus anaerobius 653-L]
Length = 227
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 2/124 (1%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAPLHL 80
R ++ ++KG L E+L +++ S++ +L + + G+ +
Sbjct: 12 DERPVEKMIKKGVKYLNNSELLAILIRTGSRNDSAISLSTKILAKTDKGIRGLVDMTIED 71
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L I IG A +K R+ K P F
Sbjct: 72 LCMIEGIGPTKATIIKAALELGSRVSGYIPKNYKIKNPW-DIYSFYMEEMRYLKKEVFKV 130
Query: 141 CFSI 144
Sbjct: 131 VLLN 134
>gi|15606726|ref|NP_214106.1| DNA repair protein RadC [Aquifex aeolicus VF5]
gi|6685835|sp|O67541|Y1610_AQUAE RecName: Full=UPF0758 protein aq_1610
gi|2983952|gb|AAC07500.1| DNA repair protein RadC [Aquifex aeolicus VF5]
Length = 231
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 5/131 (3%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
L I R R++ L+ G L+ E+L +IL D S++K L+K +
Sbjct: 13 KRLKEIPEELRPREKLLKLGPENLSDEELLAVILGSGSKGADVLSLSKELIKM--GWEEL 70
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
+ L ++ +G AL++K + S+R + Q ++ + +
Sbjct: 71 EKKSVEELLKVRGLGLVKALQVKALVELSKRFKGGKSR--ISIRNPQEAFEFLKDKF-DE 127
Query: 134 NANNFAYCFSI 144
+ +
Sbjct: 128 RRESLIALYLD 138
>gi|257885023|ref|ZP_05664676.1| DNA repair protein RadC [Enterococcus faecium 1,231,501]
gi|257890249|ref|ZP_05669902.1| DNA repair protein RadC [Enterococcus faecium 1,231,410]
gi|258616808|ref|ZP_05714578.1| DNA repair protein RadC [Enterococcus faecium DO]
gi|260559754|ref|ZP_05831934.1| DNA repair protein RadC [Enterococcus faecium C68]
gi|293559749|ref|ZP_06676270.1| DNA repair protein RadC [Enterococcus faecium E1162]
gi|293567615|ref|ZP_06678959.1| DNA repair protein RadC [Enterococcus faecium E1071]
gi|257820875|gb|EEV48009.1| DNA repair protein RadC [Enterococcus faecium 1,231,501]
gi|257826609|gb|EEV53235.1| DNA repair protein RadC [Enterococcus faecium 1,231,410]
gi|260074422|gb|EEW62744.1| DNA repair protein RadC [Enterococcus faecium C68]
gi|291589716|gb|EFF21520.1| DNA repair protein RadC [Enterococcus faecium E1071]
gi|291606297|gb|EFF35710.1| DNA repair protein RadC [Enterococcus faecium E1162]
Length = 230
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R G AL+ E+L ++L SIA LLK F L + A LH L+EI
Sbjct: 15 PRERMEIYGAEALSDQELLAILLRTGQHPYSVMSIAGNLLKTFGGLASLRQATLHELEEI 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI + + + + +
Sbjct: 75 RGIGRVKAIEIKALIELGRRIQTDHERAAPPVRTSYELAQQLILEMKDHKQEHLVCIYLD 134
>gi|330995877|ref|ZP_08319773.1| DNA repair protein RadC [Paraprevotella xylaniphila YIT 11841]
gi|329574408|gb|EGG55979.1| DNA repair protein RadC [Paraprevotella xylaniphila YIT 11841]
Length = 248
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 14/146 (9%), Positives = 41/146 (28%), Gaps = 18/146 (12%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFG 75
+R R++ +QKG +AL+ E+L +++ + + K ++ +
Sbjct: 9 KQWAEDDRPREKLMQKGPSALSNAELLAILIGSGTVEESAVGLMKRVMADCDNRLKALGR 68
Query: 76 APLHL-----------------LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTP 118
L ++ +G+ A+ + +R ++ + + +
Sbjct: 69 MSLEELTGNVEVCDKETGKKKRVRRYKGLGEAKAVAIMAACELGRRRMEEDAAELPSIRS 128
Query: 119 GQPCLISVERHYPMKNANNFAYCFSI 144
Sbjct: 129 SVDLYHYFLPQMQDLFHEECYVLLMN 154
>gi|291087662|ref|ZP_06347068.2| DNA repair protein RadC [Clostridium sp. M62/1]
gi|291074382|gb|EFE11746.1| DNA repair protein RadC [Clostridium sp. M62/1]
Length = 252
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 3/125 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL--LKRFATLGGVFGAPLHL 80
+R +R + G AL E+L +I+ + + S+A+ + L + G+ L
Sbjct: 35 DRPYERCERLGPEALTDAELLSIIIRTGARGEHSLSLAQRILALNEPQGILGLLHLTLPE 94
Query: 81 LQEINRIGKRVALELKLVSVASQRILKA-NWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L + IG+ L+L + S+RI K K +
Sbjct: 95 LTAVKGIGRVKGLQLLCIGELSRRIWKTLAQKEIKSFDGPESIAAFYMEDMRHMEQEELH 154
Query: 140 YCFSI 144
Sbjct: 155 LMMFN 159
>gi|28189070|dbj|BAC56220.1| putative DNA repair protein [Streptococcus suis]
Length = 226
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G L+ E+L + + ++ ++ LL R +L + + LQ +
Sbjct: 13 PRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI ++ + + + + + K + +
Sbjct: 73 TGIGRVKAIEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLN 132
>gi|223932335|ref|ZP_03624338.1| DNA repair protein RadC [Streptococcus suis 89/1591]
gi|302023854|ref|ZP_07249065.1| DNA repair protein RadC [Streptococcus suis 05HAS68]
gi|28189065|dbj|BAC56216.1| putative DNA repair protein [Streptococcus suis]
gi|223899016|gb|EEF65374.1| DNA repair protein RadC [Streptococcus suis 89/1591]
Length = 226
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G L+ E+L + + ++ ++ LL R +L + + LQ +
Sbjct: 13 PRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI ++ + + + + + K + +
Sbjct: 73 TGIGRVKAIEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLN 132
>gi|58040814|ref|YP_192778.1| DNA repair protein RadC [Gluconobacter oxydans 621H]
gi|58003228|gb|AAW62122.1| DNA repair protein RadC [Gluconobacter oxydans 621H]
Length = 229
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPL 78
GH R+R R L G + LA YEILE++LF +PRKDTK +AK L+ F +L VF AP
Sbjct: 17 QGHRARMRARVLANGAHTLADYEILEMLLFAGVPRKDTKPLAKGLIAHFGSLVDVFRAPT 76
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L+ + L+L VA++R+ + + L+ + + +++ F
Sbjct: 77 QALRAA-GLKDDAIRVLRLPGVAAERLASSEQRERPTLSNWEQLMAYLDQALEGGIPGQF 135
Query: 139 AYCFSIN 145
+ N
Sbjct: 136 RLLYLDN 142
>gi|313886466|ref|ZP_07820182.1| DNA repair protein RadC [Porphyromonas asaccharolytica PR426713P-I]
gi|312924012|gb|EFR34805.1| DNA repair protein RadC [Porphyromonas asaccharolytica PR426713P-I]
Length = 267
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 47/154 (30%), Gaps = 10/154 (6%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
L+ ++ + + + +R R++ L+ G L+ E+L + + + +A
Sbjct: 7 LQPAKLLPKSTTKNTIKQWSEEDRPREKLLRLGARHLSDAELLAIFINSGTEQDTALDLA 66
Query: 61 KALLKR-FATLGGVFGAPLHLLQ---------EINRIGKRVALELKLVSVASQRILKANW 110
K L+ LG + L +G A + +R+
Sbjct: 67 KRLMTGLNNELGRLLEIDHAYLTGCEPGEKKKRFAGLGDARACTILAAIELGRRLRDTPP 126
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++ +T + R + +
Sbjct: 127 PLRTPITCSLDAYRVLRRQLESLDHEELRCLYLD 160
>gi|330818061|ref|YP_004361766.1| DNA repair protein RadC [Burkholderia gladioli BSR3]
gi|327370454|gb|AEA61810.1| DNA repair protein RadC [Burkholderia gladioli BSR3]
Length = 282
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 46/120 (38%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R LQ+G +A+ E++ L++ I + A +L++F +L + AP H +Q +
Sbjct: 70 PRERLLQRGADAVTDVELVALLIGNGIGFGRSGDTALRVLEKFGSLRALLDAPHHEIQAV 129
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
I A L + +R L + + + + F +
Sbjct: 130 EGIAAARAAVLIATTELVRRALVERARARSQVDSPGAVRDYLRLKIGTRRRETFLCLYLD 189
>gi|253751831|ref|YP_003024972.1| DNA repair protein RadC [Streptococcus suis SC84]
gi|253753654|ref|YP_003026795.1| DNA repair protein RadC [Streptococcus suis P1/7]
gi|253755465|ref|YP_003028605.1| DNA repair protein RadC [Streptococcus suis BM407]
gi|18253151|dbj|BAB83962.1| putative DNA repair protein [Streptococcus suis]
gi|251816120|emb|CAZ51743.1| DNA repair protein RadC [Streptococcus suis SC84]
gi|251817929|emb|CAZ55707.1| DNA repair protein RadC [Streptococcus suis BM407]
gi|251819900|emb|CAR45944.1| DNA repair protein RadC [Streptococcus suis P1/7]
gi|292558401|gb|ADE31402.1| putative DNA repair protein [Streptococcus suis GZ1]
gi|319758183|gb|ADV70125.1| DNA repair protein RadC [Streptococcus suis JS14]
Length = 226
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G L+ E+L + + ++ ++ LL R +L + + LQ +
Sbjct: 13 PRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI ++ + + + + + K + +
Sbjct: 73 TGIGRVKAIEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLN 132
>gi|28189083|dbj|BAC56230.1| putative DNA repair protein [Streptococcus suis]
Length = 226
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G L+ E+L + + + ++ LL + L + + LQ +
Sbjct: 13 PRERLVEVGPERLSNQELLAIFIRTGTKNEPVTILSNKLLNQLENLASLRDLSIEELQTL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI +++ + + + + + + K + +
Sbjct: 73 TGIGRVKAIEIKAMIELGKRINQSHLQLNEQVLGSEKLGRKMIQEIGDKKQEHLVALYLN 132
>gi|323486933|ref|ZP_08092249.1| DNA repair protein RadC [Clostridium symbiosum WAL-14163]
gi|323691981|ref|ZP_08106230.1| DNA repair protein RadC [Clostridium symbiosum WAL-14673]
gi|323399796|gb|EGA92178.1| DNA repair protein RadC [Clostridium symbiosum WAL-14163]
gi|323503990|gb|EGB19803.1| DNA repair protein RadC [Clostridium symbiosum WAL-14673]
Length = 230
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 5/130 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK--RFATLGGVFGAPLHL 80
+R ++ L G +L E+L +IL + + ++K +L+ A + G+ L
Sbjct: 13 DRPYEKCLASGPESLTDAELLSVILRTGARGESSLELSKQILELSYPAGILGLLHLSLPE 72
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLISVERHYPMKNANNFA 139
L + IGK +EL + S+RI + +
Sbjct: 73 LMAVRGIGKVKGIELLCIGELSRRIWRTLVTEEAVVFNEPAVISGFYMQDMRHMEQEELH 132
Query: 140 YCFSI--NII 147
N++
Sbjct: 133 LMMLNTKNVL 142
>gi|28189060|dbj|BAC56212.1| putative DNA repair protein [Streptococcus suis]
Length = 215
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G L+ E+L + + ++ ++ LL R +L + + LQ +
Sbjct: 13 PRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI ++ + + + + + K + +
Sbjct: 73 TGIGRVKAIEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLN 132
>gi|269836380|ref|YP_003318608.1| DNA repair protein RadC [Sphaerobacter thermophilus DSM 20745]
gi|269785643|gb|ACZ37786.1| DNA repair protein RadC [Sphaerobacter thermophilus DSM 20745]
Length = 240
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 40/123 (32%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R++ +G AL E+L +IL + +A LL L G+ L
Sbjct: 19 DERPREKLRLRGAAALTNAELLAIILNTGVRGATVLDVATRLLVEHDGLPGLARLDFEDL 78
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + IG+ A +LK +R+ A + + + +
Sbjct: 79 RRSHGIGEAKAAKLKAALELGRRLTVAQPEDRPRVQTPEDIYAVAGSDMGALDQEQLRVV 138
Query: 142 FSI 144
Sbjct: 139 VLD 141
>gi|86609443|ref|YP_478205.1| DNA repair protein RadC [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557985|gb|ABD02942.1| DNA repair protein RadC [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 239
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALLK----RFATLGGVFGA 76
+R R+R L +G L++ E+L ++L P K +A+ LLK + L +
Sbjct: 11 DRPRERLLSQGARHLSHAELLAILLNTGQGPGKLSAVGLAQLLLKKLEAQGDPLAQLRQV 70
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L +I IG A + +R+ + + + + +++ ++
Sbjct: 71 EAGELLQIEGIGPAKAATVLAAIELGRRVFLSRPPDRTAIESPEQAAMALSGDLMWESQE 130
Query: 137 NFAYCFSI 144
+FA
Sbjct: 131 HFAVLHLD 138
>gi|332177387|gb|AEE13077.1| DNA repair protein RadC [Porphyromonas asaccharolytica DSM 20707]
Length = 267
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 47/154 (30%), Gaps = 10/154 (6%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
L+ ++ + + + +R R++ L+ G L+ E+L + + + +A
Sbjct: 7 LQPAKLLSKSTTKNTIKQWSEEDRPREKLLRLGARHLSDAELLAIFINSGTEQDTALDLA 66
Query: 61 KALLKR-FATLGGVFGAPLHLLQ---------EINRIGKRVALELKLVSVASQRILKANW 110
K L+ LG + L +G A + +R+
Sbjct: 67 KRLMTGLNNELGRLLEIDHAYLTGCEPGEKKKRFAGLGDARACTILAAIELGRRLRDTPP 126
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++ +T + R + +
Sbjct: 127 PLRTPITCSLDAYRVLRRQLESLDHEELRCLYLD 160
>gi|148557370|ref|YP_001264952.1| DNA repair protein RadC [Sphingomonas wittichii RW1]
gi|148502560|gb|ABQ70814.1| DNA repair protein RadC [Sphingomonas wittichii RW1]
Length = 230
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 31 QKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKR 90
+ G +AL +E++E +L IPR+DTK +A+ALL F LG + A L + +
Sbjct: 25 EGGPDALLDHELIEYLLALAIPRRDTKPMARALLAEFGGLGPLLSADPESLARA-GLSEG 83
Query: 91 VALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI--NII 147
V LK+ ++ R+L++ + L+ Q + + N++
Sbjct: 84 VVAALKIAEASALRLLRSKVQDRPILSDWQALADYLRADMAHRAVERVRVLHLNSKNVL 142
>gi|307693174|ref|ZP_07635411.1| DNA repair protein RadC [Ruminococcaceae bacterium D16]
Length = 229
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 56/130 (43%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
+ GH R++ FL +G + +LEL+LF IP+ D +A L+++F +L GV
Sbjct: 1 MASHTGHRQRMKAEFLARGIEGWPDHRVLELLLFYSIPQGDVNGLAHDLIEQFGSLSGVL 60
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
A + L+++ +G+ A+ L+++ R + + + +E ++
Sbjct: 61 DASVEELRKVKGVGEHTAVLLRMLPALLGRYQASRTRLSDIINSADDAYPWLEPYFFGAR 120
Query: 135 ANNFAYCFSI 144
Sbjct: 121 NEMVYVLCLD 130
>gi|262193472|ref|YP_003264681.1| DNA repair protein RadC [Haliangium ochraceum DSM 14365]
gi|262076819|gb|ACY12788.1| DNA repair protein RadC [Haliangium ochraceum DSM 14365]
Length = 226
Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+RFL G ++ E+L LIL ++ +A+ LL L + A L E+
Sbjct: 13 PRERFLAYGGERVSNAELLALILGTGTRGRNVLELAEHLLHALGGLPQLARAAPSELLEV 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A + +R L+A+ + + + + + F
Sbjct: 73 PGIGAARASRVAATFHLGRRALEASAAAPVVVRNPRDLYERLRLRLRGLSQEVFLVIALD 132
Query: 145 --NII 147
N+I
Sbjct: 133 PRNVI 137
>gi|15672989|ref|NP_267163.1| DNA repair protein RadC [Lactococcus lactis subsp. lactis Il1403]
gi|13878681|sp|Q9CGT5|Y1007_LACLA RecName: Full=UPF0758 protein LL1007
gi|12723955|gb|AAK05105.1|AE006335_1 DNA repair protein RadC [Lactococcus lactis subsp. lactis Il1403]
gi|326406552|gb|ADZ63623.1| DNA repair protein RadC [Lactococcus lactis subsp. lactis CV56]
Length = 226
Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R GE L+ E+L ++L + + ++A +L+ F TL + A ++ L+EI
Sbjct: 13 PRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG ++E++ + +RI N + + +S+ + +
Sbjct: 73 SGIGLAKSIEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLD 132
>gi|209526662|ref|ZP_03275186.1| DNA repair protein RadC [Arthrospira maxima CS-328]
gi|209492898|gb|EDZ93229.1| DNA repair protein RadC [Arthrospira maxima CS-328]
Length = 243
Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 44/129 (34%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALLKRFATLGG-----VFG 75
R R+R + G +L+ E++ ++L K + + + +LK + +
Sbjct: 14 ERPRERLMALGPQSLSTAELIAILLGTGQGKGKLSSVGLGQYILKELSQYQKDPLSVMPN 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L +I+ +G A + +R+ + + ++ + +
Sbjct: 74 ISVTELTKIDGVGPAKATTILAAIELGKRVFLSKPPELTVIDSPLVAANALSHNLMWQTQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 ERFAILLMD 142
>gi|259047287|ref|ZP_05737688.1| DNA repair protein RadC [Granulicatella adiacens ATCC 49175]
gi|259036063|gb|EEW37318.1| DNA repair protein RadC [Granulicatella adiacens ATCC 49175]
Length = 227
Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + G L +E+L ++L + ++ +L F L + A L L I
Sbjct: 15 PRERLERYGAKVLETHELLAILLRTGSKDLNVLQLSIVVLNTFEDLHSLKMASLDELMHI 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
N IG+ A+ELK R+ KA+ +T + + + +
Sbjct: 75 NGIGRTKAIELKAAIELGARLNKASQMKLGKITSSKMAGQWIVEELKDAYQEHLVALYLN 134
>gi|281491501|ref|YP_003353481.1| DNA repair protein RadC [Lactococcus lactis subsp. lactis KF147]
gi|281375219|gb|ADA64732.1| DNA repair protein RadC [Lactococcus lactis subsp. lactis KF147]
Length = 226
Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 52/120 (43%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R GE L+ E+L ++L + + ++A +L+ F TL + A ++ L+EI
Sbjct: 13 PRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG ++E++ + +RI N + + +S+ + +
Sbjct: 73 SGIGLAKSIEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLD 132
>gi|312129966|ref|YP_003997306.1| DNA replication and repair protein radc [Leadbetterella byssophila
DSM 17132]
gi|311906512|gb|ADQ16953.1| DNA replication and repair protein RadC [Leadbetterella byssophila
DSM 17132]
Length = 225
Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 4/134 (2%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR-FATL 70
K + ++ R++ LQKG +AL+ E+L +++ + + I K +L R L
Sbjct: 2 KKRSIKSWAEEDQPREKLLQKGVSALSNAELLSILIGKGTVQHSALDIGKQILVRVNHDL 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
+ + L + IG A+ L ++ + K + Q + +
Sbjct: 62 MHLARLNVQDLVQFKGIGNTKAVTLVAAFELAR---RRKGIQKPKIKTAQDAYEHFKPYL 118
Query: 131 PMKNANNFAYCFSI 144
F
Sbjct: 119 SDLYREEFWMLCLN 132
>gi|218132457|ref|ZP_03461261.1| hypothetical protein BACPEC_00316 [Bacteroides pectinophilus ATCC
43243]
gi|217992567|gb|EEC58569.1| hypothetical protein BACPEC_00316 [Bacteroides pectinophilus ATCC
43243]
Length = 246
Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 6/139 (4%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA--- 68
K+ + R ++F+ G AL+ E+L +I+ + +A ++
Sbjct: 11 KNRRTKDLPASMRPYEKFMLYGAGALSDAELLAVIIKTGTTGISSIELAAGIIDMACNGS 70
Query: 69 ---TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
L G+ G L I IG AL++ V S+RI K+ +
Sbjct: 71 GSTNLAGLTGIGYEDLVSIRGIGSVKALQIMAVIELSRRISKSCAYRRLDFRNPVSIADY 130
Query: 126 VERHYPMKNANNFAYCFSI 144
Sbjct: 131 YMEDLRHAECERLVLVMLD 149
>gi|225847877|ref|YP_002728040.1| DNA repair protein RadC [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643861|gb|ACN98911.1| DNA repair protein RadC [Sulfurihydrogenibium azorense Az-Fu1]
Length = 229
Score = 91.2 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 57/143 (39%), Gaps = 9/143 (6%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
+D + K P KD D + R++ L+ G ++L+ E+L + L + +++
Sbjct: 3 QDRAVYKKPIKDLPKDLL-----PREKALKYGLSSLSDEELLAISLGSGTKGINVIGLSQ 57
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
+L + + L L++I IG AL++ + ++R+ + K +T
Sbjct: 58 KILNGK-SFKELKNISLEDLKKIKGIGTTKALQVLSIIEIAKRM--EDPEEKVKITSVSD 114
Query: 122 CLISVERHYPMKNANNFAYCFSI 144
++ ++ +
Sbjct: 115 AYSLLKY-LSKESQEYMVGIYLN 136
>gi|319956638|ref|YP_004167901.1| DNA replication and repair protein radc [Nitratifractor salsuginis
DSM 16511]
gi|319419042|gb|ADV46152.1| DNA replication and repair protein RadC [Nitratifractor salsuginis
DSM 16511]
Length = 219
Score = 91.2 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 21 HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHL 80
H +R R++ +G AL E+L ++L IP KD + +A+ + L
Sbjct: 9 HRDRPREKMAARGAGALKNEELLAVLLGSGIPGKDVRKLAREIAAVMEQ--EFDRLDLER 66
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L +I+ +G A ++ S+R L ++ + +E + K+ +F
Sbjct: 67 LTQIHGLGPAKASQILAAIELSRRFLLSSRRQ---IHSAAEVYELLEP-FANKSREHF 120
>gi|28189075|dbj|BAC56224.1| putative DNA repair protein [Streptococcus suis]
Length = 226
Score = 91.2 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G L+ E+L + + + ++ LL + L + + LQ +
Sbjct: 13 PRERLVEVGPERLSNQELLAIFIRTGTKNEPVTILSNKLLNQLENLASLRDLXIEELQTL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI +++ + + + + + + K + +
Sbjct: 73 TGIGRVKAIEIKAMIELGKRINQSHLQLNEQVLGSEKLGRKMIQEIGDKKQEHLVALYLN 132
>gi|255262247|ref|ZP_05341589.1| DNA repair protein RadC [Thalassiobium sp. R2A62]
gi|255104582|gb|EET47256.1| DNA repair protein RadC [Thalassiobium sp. R2A62]
Length = 190
Score = 91.2 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 40/96 (41%)
Query: 49 RLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKA 108
IPR+D K +A+ L+ F V A L++IN +G V ELK+V AS R+ +A
Sbjct: 2 SAIPRRDVKPLARQLIDAFGDFNRVLSAETARLRDINGVGDAVIAELKIVEAASHRLARA 61
Query: 109 NWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ ++ L + F +
Sbjct: 62 KVIQRHVISSWDAVLDYCHTVMSHRQTEQFRILYLD 97
>gi|257438385|ref|ZP_05614140.1| putative DNA repair protein RadC [Faecalibacterium prausnitzii
A2-165]
gi|257199216|gb|EEU97500.1| putative DNA repair protein RadC [Faecalibacterium prausnitzii
A2-165]
Length = 241
Score = 90.8 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 49/126 (38%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
+ GH R+R R Q G +L +E+LE +L+ RKDT +A L+ RF
Sbjct: 2 AKESSQHKGHRQRMRARVEQYGLESLEPHEVLEYVLYITNTRKDTNGLAHVLMDRFGDFA 61
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
GV A L + +G A L L+ + + + KK + + + +
Sbjct: 62 GVLDASEEDLLTVEGVGPSTARMLHLLPQVGRYYTQCAVNGKKCMKTTDQLVEYLMAQFA 121
Query: 132 MKNANN 137
Sbjct: 122 GTVQER 127
>gi|160938816|ref|ZP_02086167.1| hypothetical protein CLOBOL_03710 [Clostridium bolteae ATCC
BAA-613]
gi|158437779|gb|EDP15539.1| hypothetical protein CLOBOL_03710 [Clostridium bolteae ATCC
BAA-613]
Length = 231
Score = 90.8 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 4/134 (2%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR---FATLG 71
+ + H +R ++ L G ++L+ E+L +IL ++ +A +LL L
Sbjct: 5 RIKDLPHKDRPYEKCLSLGPDSLSDTELLAVILRTGSREGNSLDLADSLLALGSPGDGLL 64
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHY 130
G+ L I +GK ++L + S+RI K S +
Sbjct: 65 GLLHHSLDDFTRIKGVGKVKGVQLLCIGELSKRIWKRKASEHTLYFGRPEEISDYYMEDM 124
Query: 131 PMKNANNFAYCFSI 144
F
Sbjct: 125 RHLEQEEIRVMFLN 138
>gi|186686420|ref|YP_001869616.1| DNA repair protein RadC [Nostoc punctiforme PCC 73102]
gi|229470321|sp|B2IY74|Y6401_NOSP7 RecName: Full=UPF0758 protein Npun_R6401
gi|186468872|gb|ACC84673.1| DNA repair protein RadC [Nostoc punctiforme PCC 73102]
Length = 243
Score = 90.8 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALLKRFATLGG-----VFG 75
R R+R + G LA E++ ++L P K + + +L +
Sbjct: 14 ERPRERLMTHGAKILATAELIAILLGTGQGPGKLSAVGLGQFILSELGKHQRDPLAVLRE 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L I+ +G A + +R ++ + + ++ + +
Sbjct: 74 VSPAELMLISGVGPAKATSILAAIELGKRAFQSRPNDGTLIDSPLAAAATLSQDLMWQTQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 ERFAVVLLD 142
>gi|163783631|ref|ZP_02178620.1| DNA repair protein RadC [Hydrogenivirga sp. 128-5-R1-1]
gi|159881124|gb|EDP74639.1| DNA repair protein RadC [Hydrogenivirga sp. 128-5-R1-1]
Length = 225
Score = 90.8 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 5/121 (4%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ + G +L+ E+L ++ +D SI+K+++ + L L E
Sbjct: 16 RPREKLRKFGAESLSDEELLAVLFGSGTRGRDVLSISKSVVDM--GWKRLEEMELSELTE 73
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G AL++K + S+RI + + + + + +
Sbjct: 74 LKGLGLVKALQIKALIELSKRIR--EPFRGVKILSPEDAYTFLRESFDDR-KETLVALYL 130
Query: 144 I 144
Sbjct: 131 D 131
>gi|238927763|ref|ZP_04659523.1| DNA repair protein RadC [Selenomonas flueggei ATCC 43531]
gi|238884479|gb|EEQ48117.1| DNA repair protein RadC [Selenomonas flueggei ATCC 43531]
Length = 225
Score = 90.8 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 3/119 (2%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF--ATLGGVFGAPLHLLQ 82
R+R L G L+ E+L ++L ++ +A+ + RF L + P
Sbjct: 12 PRERLLAHGAAVLSDAELLAVLLRTGRAGENVLDLARGIAARFREEGLAAILRMPAAEFA 71
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I IG A + +R A + + + +F
Sbjct: 72 RIPGIGSAKAATVLAALELGRR-AYAGTRGMPRMNEAADVAALLSARCQAERREHFFVL 129
>gi|297587677|ref|ZP_06946321.1| DNA repair protein RadC [Finegoldia magna ATCC 53516]
gi|297574366|gb|EFH93086.1| DNA repair protein RadC [Finegoldia magna ATCC 53516]
Length = 223
Score = 90.8 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 1/121 (0%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ G ++++ E++++IL I + + ++K ++ + L +
Sbjct: 11 RPREKMKINGISSMSDEELMQIILKTGIKEEGVEILSKRVIDYINE-NDYKDICVEDLMK 69
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I IG A + +R+ L + NF
Sbjct: 70 IKGIGMAKATSILAGIEIGRRLALRKAMDSFSLNDPDSVAEIFCNEIGSCDVENFYALLL 129
Query: 144 I 144
Sbjct: 130 D 130
>gi|302381094|ref|ZP_07269554.1| putative DNA repair protein RadC [Finegoldia magna ACS-171-V-Col3]
gi|303235301|ref|ZP_07321919.1| putative DNA repair protein RadC [Finegoldia magna BVS033A4]
gi|302311141|gb|EFK93162.1| putative DNA repair protein RadC [Finegoldia magna ACS-171-V-Col3]
gi|302493615|gb|EFL53403.1| putative DNA repair protein RadC [Finegoldia magna BVS033A4]
Length = 223
Score = 90.8 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 1/121 (0%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ G ++++ E++++IL I + + ++K ++ + L +
Sbjct: 11 RPREKMKINGISSMSDEELMQIILKTGIKEEGVEILSKRVIDYINE-NDYKDLCVEELMK 69
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I IG A + +R+ L + NF
Sbjct: 70 IKGIGMAKATSILAGIEIGRRLALRKAMDSFSLNDPDSVAEIFCNEIGSCDVENFYALLL 129
Query: 144 I 144
Sbjct: 130 D 130
>gi|28189079|dbj|BAC56227.1| putative DNA repair protein [Streptococcus suis]
Length = 226
Score = 90.4 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 49/120 (40%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R ++ G L+ E+L + + + ++ LL + L + + LQ +
Sbjct: 13 PRERLVEVGPERLSNQELLAIFIRTGTKNEPVTILSNKLLNQLENLASLRDLFIEELQTL 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI +++ + + + + + + K + +
Sbjct: 73 TGIGRVKAIEIKAMIELGKRINQSHLQLNEQVLGSEKLGRKMIQEIGDKKQEHLVALYLN 132
>gi|121730766|ref|ZP_01682859.1| conserved domain protein [Vibrio cholerae V52]
gi|121627659|gb|EAX60326.1| conserved domain protein [Vibrio cholerae V52]
Length = 108
Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 43/97 (44%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ LQ+G +L+ E+L + L + ++A LL+ F +L +F A
Sbjct: 12 PREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRH 71
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQP 121
+G+ ++L+ V +QR L LT Q
Sbjct: 72 KGLGEAKFVQLQAVLEMTQRYLAETLKRGDALTSPQQ 108
>gi|313896811|ref|ZP_07830358.1| DNA repair protein RadC [Selenomonas sp. oral taxon 137 str. F0430]
gi|312974258|gb|EFR39726.1| DNA repair protein RadC [Selenomonas sp. oral taxon 137 str. F0430]
Length = 228
Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 3/121 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT--LGGVFGAPLHL 80
R+R ++KG L E+L ++L ++ +A+ ++ + + P
Sbjct: 13 EMPRERLIKKGAQELTDAELLAILLRTGRRGENVLDMARRIISELPEQRISALLYMPAQE 72
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L I+ +G A + R + + + Q + Y + +F
Sbjct: 73 LARIDGLGLAKAATVLAALELGSRAQRRAGARIRV-DEAQVVADLLLPRYRTEIHEHFLV 131
Query: 141 C 141
Sbjct: 132 L 132
>gi|258645224|ref|ZP_05732693.1| DNA repair protein RadC [Dialister invisus DSM 15470]
gi|260402574|gb|EEW96121.1| DNA repair protein RadC [Dialister invisus DSM 15470]
Length = 227
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 46/126 (36%), Gaps = 5/126 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA---TLGGVFGAPLH 79
++ R+RF + + + +++ ++L +A+ ++++ + G
Sbjct: 10 DKPRERFAKA-PDTASMVDLVAILLRTGRHGCSVMDMAQEVVEQIRLSTDVNGFDNLDWR 68
Query: 80 LLQEINRIGKRVALELKLVSVASQRILK-ANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L + +G+ A+ + +R+ + N + + + ++ +F
Sbjct: 69 DLISVKGVGQDKAITVCAAVELGRRLAQFHNKKQLENFSFPEAVASYFMEKLRHEDQEHF 128
Query: 139 AYCFSI 144
CF
Sbjct: 129 IVCFLN 134
>gi|82523883|emb|CAI78606.1| DNA repair protein [uncultured delta proteobacterium]
Length = 219
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L KG +L+ E+L +I+ + + D S++ +++ G + A L
Sbjct: 11 ERPREKLLAKGAESLSDRELLAVIIGKGTQKDDVLSLSNKIIRIIDQKGIMVSAD--DLI 68
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+++ IG A + +R ++ + L + HY + +F
Sbjct: 69 QVDGIGLAKAALIASAIEFVRRRIR---PEGLKIKFPTDILPLLR-HYDDRKQEHFICIS 124
Query: 143 SI 144
Sbjct: 125 LN 126
>gi|158337489|ref|YP_001518664.1| DNA repair protein RadC [Acaryochloris marina MBIC11017]
gi|229485543|sp|B0CEV0|Y4368_ACAM1 RecName: Full=UPF0758 protein AM1_4368
gi|158307730|gb|ABW29347.1| DNA repair protein RadC [Acaryochloris marina MBIC11017]
Length = 243
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 7/129 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALLKRFATLGG-----VFG 75
+R R+R + +G L + E+L ++L P K + + +L+ F+ +
Sbjct: 14 DRPRERLIAQGAKYLTHAELLAILLGTGQGPGKLSAVGLGQHVLQHFSEHQQDPLTVLRD 73
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L I IG A + +RI +A + ++ ++
Sbjct: 74 VNASELTTIQGIGPAKATTILAAIELGKRICQARPPELTVIDDPAVAAAALAGELMWQSQ 133
Query: 136 NNFAYCFSI 144
FA
Sbjct: 134 ERFAVLLLD 142
>gi|169824054|ref|YP_001691665.1| DNA repair protein RadC [Finegoldia magna ATCC 29328]
gi|254789652|sp|B0S3Y4|Y357_FINM2 RecName: Full=UPF0758 protein FMG_0357
gi|167830859|dbj|BAG07775.1| DNA repair protein RadC [Finegoldia magna ATCC 29328]
Length = 223
Score = 90.0 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 1/121 (0%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R++ G ++++ E++++IL I + + ++K ++ + L +
Sbjct: 11 RPREKMKINGISSMSDEELMQIILKTGIKEEGVEILSKRVIDYINE-NDYKDLCVEELMK 69
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
I IG A + +R+ L + NF
Sbjct: 70 IKGIGMAKATSILAGIEIGRRLSLRKAMDSFSLNDPDSVAEIFCNEIGSCDVENFYALLL 129
Query: 144 I 144
Sbjct: 130 D 130
>gi|118462960|ref|YP_884234.1| DNA repair protein RadC [Mycobacterium avium 104]
gi|118164247|gb|ABK65144.1| DNA repair protein RadC [Mycobacterium avium 104]
Length = 183
Score = 90.0 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 3/118 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L G +AL E++ L+L K +A L+ + + + GA L
Sbjct: 25 ERPRERLLTCGVDALTAGELIALVLRNGTKGKSALELASELIAEYGSAQALAGARPEELA 84
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
+G A L S+R ++++ S L +
Sbjct: 85 MRPGVGPAKAAALVAAFQLSRRSVRSDPSQ---LRSAEDVATIARGELAGARRERLIV 139
>gi|320530858|ref|ZP_08031895.1| putative DNA repair protein RadC [Selenomonas artemidis F0399]
gi|320136892|gb|EFW28837.1| putative DNA repair protein RadC [Selenomonas artemidis F0399]
Length = 228
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 3/121 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT--LGGVFGAPLHL 80
R+R ++KG L E+L ++L ++ +A+ ++ + + P
Sbjct: 13 EMPRERLIEKGAQELTDAELLAILLRTGRRGENVLDMARRIISELPEQRISALLYMPAQE 72
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L I+ +G A + R + + + Q + Y + +F
Sbjct: 73 LARIDGLGLAKAATILAALELGSRAQRRAGARIRV-DEAQVVADLLLPRYRTEIHEHFLV 131
Query: 141 C 141
Sbjct: 132 L 132
>gi|167621854|ref|YP_001676639.1| DNA repair protein RadC [Caulobacter sp. K31]
gi|167351595|gb|ABZ74325.1| DNA repair protein RadC [Caulobacter sp. K31]
Length = 223
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 5/131 (3%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELIL-FRLIPRKDTKSIAKALLKRFATLGGV 73
++ RL+ G + L+ EILEL L S+A L+ RF V
Sbjct: 4 DPLHVNRAERLQAMAASLGPSVLSDVEILELHLARSGHRE--AGSLAHDLIARFGGFCAV 61
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
A L +G+ A++LKL+ A++R+ +A+ + ++ LT +
Sbjct: 62 LAADQSQL--HLAVGELAAMDLKLLREAARRVTRADLAQRQLLTSFSQVADYLRALMAGL 119
Query: 134 NANNFAYCFSI 144
F F
Sbjct: 120 PREEFWVLFLD 130
>gi|172058125|ref|YP_001814585.1| DNA repair protein RadC [Exiguobacterium sibiricum 255-15]
gi|171990646|gb|ACB61568.1| DNA repair protein RadC [Exiguobacterium sibiricum 255-15]
Length = 217
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 44/120 (36%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
+D KG E+L ++ + IA+ LL+ + +L + A + L++
Sbjct: 5 PKDMIQLKGLAQATTVELLACLVRSGTRNRCPLEIAEDLLEIYPSLIELEAAGVGGLEKA 64
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+GK AL++ +R++ ++ + + + +F +
Sbjct: 65 PGVGKAKALQIMAGLELGRRLVTEPKWVRPVVRSPDDAAELLMEEMRLYQQEHFICLYLN 124
>gi|227535259|ref|ZP_03965308.1| DNA repair protein (RadC) [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|227187143|gb|EEI67210.1| DNA repair protein (RadC) [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
Length = 229
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 41/120 (34%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L G AL E+L+L++ K I +L + L G+ LL+ I
Sbjct: 15 PRERLLAHGPQALTDAELLQLVVRAGNQHYPVKQIVSEVLATYPKLQGLAEGDQGLLEHI 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G + +R ++ + + ++ + N + F
Sbjct: 75 RGLGAAKRASILAGVELGRRAMQRQTVRYGQIKNSEQLGKTMISRFAGVNQESMLILFLD 134
>gi|206890446|ref|YP_002249007.1| DNA repair protein RadC [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742384|gb|ACI21441.1| DNA repair protein RadC [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 222
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 9/128 (7%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ +KG AL+ E+L ++L I KD +A+ +LK L L+
Sbjct: 11 DRPREKMEKKGAKALSDLELLAVLLGSGIKGKDVFEVARDILKLTQE--DFNNLNLDNLK 68
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G A ++ S+R L + L + K F
Sbjct: 69 NIEGVGLAKACQIMAAIEFSKRFL---LKEGIKIKNVDDVLK-ITEELKDKKQEYFLSLT 124
Query: 143 SI---NII 147
N+I
Sbjct: 125 LDGASNLI 132
>gi|300071102|gb|ADJ60502.1| DNA repair protein RadC [Lactococcus lactis subsp. cremoris NZ9000]
Length = 217
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R GE L+ E+L ++L + + ++A LL+ F TL A + L+EI
Sbjct: 3 PRERLELLGEEYLSDVELLAILLRTGRKKYSSLNLALELLQHFGTLDNFRKASISELKEI 62
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + +RI + + +S+ + +
Sbjct: 63 SGIGQTKAIELRAMIELGKRIQTTTRKRYGQVLSSKEYGMSLAFEMQNFEQEHLTATYLD 122
>gi|126178013|ref|YP_001045978.1| DNA repair protein RadC [Methanoculleus marisnigri JR1]
gi|125860807|gb|ABN55996.1| DNA replication and repair protein RadC [Methanoculleus marisnigri
JR1]
Length = 223
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 9/126 (7%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA---KALLKRFATLGGVFGAPL 78
+R R+R +G AL E+L L+L R +D +A + LKR
Sbjct: 11 RDRPRERLAARGPEALTDAELLALLLGRGTKGRDVWQVAGDVERCLKRAEGCP-----SY 65
Query: 79 HLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
L I+ +G A E+ +R + + + L + + K F
Sbjct: 66 DDLLGIDGVGSAKACEIMACFELGRRYFGDDGVSGHRIARPEDVLP-LVTEWRDKKQEYF 124
Query: 139 AYCFSI 144
Sbjct: 125 FCITLN 130
>gi|170697688|ref|ZP_02888776.1| DNA repair protein RadC [Burkholderia ambifaria IOP40-10]
gi|170137436|gb|EDT05676.1| DNA repair protein RadC [Burkholderia ambifaria IOP40-10]
Length = 258
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 1/121 (0%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAPLHLLQE 83
R+R L++G AL E++ L+L D + A+ALL RF +L + A +
Sbjct: 45 PRERLLERGPAALTDAELIALLLGTGGGGLDVFASARALLARFGDSLRDMLDAEPDVFAT 104
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
IG + L V+ +R L + + + + F +
Sbjct: 105 HPGIGTARSAVLIAVTEIVRRALVEKARERLQIDSPGAVEDYLRLRIGTRPHEVFVTLYL 164
Query: 144 I 144
Sbjct: 165 D 165
>gi|307718970|ref|YP_003874502.1| DNA repair protein RadC [Spirochaeta thermophila DSM 6192]
gi|306532695|gb|ADN02229.1| DNA repair protein RadC [Spirochaeta thermophila DSM 6192]
gi|315186457|gb|EFU20217.1| DNA repair protein RadC [Spirochaeta thermophila DSM 6578]
Length = 218
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 6/123 (4%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H+R R+R +++G AL+ E++ +IL I K + +A+ +L F + L
Sbjct: 9 HDRPRERLVERGPGALSSEELMSVILGSGIKGKGVRKLAREVLSFLEARN--FSCSVKEL 66
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I +G+ A + ++R L +T + + Y K +F
Sbjct: 67 TTIEGLGQAKATLILAAFELARRYLA---PPSTPITTPEIAYQFLRP-YADKKQEHFLCL 122
Query: 142 FSI 144
Sbjct: 123 SLN 125
>gi|222100114|ref|YP_002534682.1| DNA repair protein radC like protein [Thermotoga neapolitana DSM
4359]
gi|221572504|gb|ACM23316.1| DNA repair protein radC like protein [Thermotoga neapolitana DSM
4359]
Length = 209
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 2/117 (1%)
Query: 29 FLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLLQEINRI 87
++ G AL+ E+L ++L K ++K L +RF +L + A + + I +
Sbjct: 1 MIKAGPEALSNEELLAVLLRTGKKGKHVLELSKELFRRFDNSLVKLMNASVEEIAAIEGV 60
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G A+ LK +R+ + + + L +
Sbjct: 61 GIVKAVTLKAALELGKRLHRELEQVPEKLDSAGKVYRYCQ-DMVYLEKEVVKVVCLD 116
>gi|116511836|ref|YP_809052.1| DNA repair protein [Lactococcus lactis subsp. cremoris SK11]
gi|116107490|gb|ABJ72630.1| DNA repair protein [Lactococcus lactis subsp. cremoris SK11]
Length = 217
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R GE L+ E+L ++L + + ++A LL+ F TL A + L+EI
Sbjct: 3 PRERLELLGEEYLSDVELLAILLRTGRKKYSSLNLALELLQHFGTLDNFRKASISELKEI 62
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + +RI + + +S+ + +
Sbjct: 63 SGIGQTKAIELRAMIELGKRIQTTTRKRYGQVLSSKEYGMSLAFEMQNFEQEHLTATYLD 122
>gi|125624319|ref|YP_001032802.1| DNA repair protein radC-like protein [Lactococcus lactis subsp.
cremoris MG1363]
gi|229485554|sp|A2RLC4|Y1515_LACLM RecName: Full=UPF0758 protein llmg_1515
gi|124493127|emb|CAL98091.1| DNA repair protein radC homolog [Lactococcus lactis subsp. cremoris
MG1363]
Length = 227
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 50/120 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R GE L+ E+L ++L + + ++A LL+ F TL A + L+EI
Sbjct: 13 PRERLELLGEEYLSDVELLAILLRTGRKKYSSLNLALELLQHFGTLDNFRKASISELKEI 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IG+ A+EL+ + +RI + + +S+ + +
Sbjct: 73 SGIGQTKAIELRAMIELGKRIQTTTRKRYGQVLSSKEYGMSLAFEMQNFEQEHLTATYLD 132
>gi|217076565|ref|YP_002334281.1| DNA repair protein [Thermosipho africanus TCF52B]
gi|217036418|gb|ACJ74940.1| DNA repair protein [Thermosipho africanus TCF52B]
Length = 213
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 3/121 (2%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAPLHLLQE 83
R++ + +G L+ E+L ++L D ++K L + F +L + A + L +
Sbjct: 3 PREKLINEGVENLSTEELLAILLRTGTKDLDVLKLSKNLFETFDKSLKKISTASIDELCK 62
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ +G A+ + S+R L + KFL +
Sbjct: 63 VKGLGTVKAVTILAAMELSKRYLLED-RKGKFLNSPELIYEHC-LDMKHFEQEVVRVISL 120
Query: 144 I 144
Sbjct: 121 N 121
>gi|303231365|ref|ZP_07318099.1| putative DNA repair protein RadC [Veillonella atypica
ACS-049-V-Sch6]
gi|302513961|gb|EFL55969.1| putative DNA repair protein RadC [Veillonella atypica
ACS-049-V-Sch6]
Length = 232
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 2/117 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
R R++F+ G +A E+L ++L + + + +A ++ F + G+ + L
Sbjct: 15 QRPREKFVALGAKQMAMEELLAILLRTGLKGQSSIDLAHTIIDSFTDGIYGLNHMTVDDL 74
Query: 82 QEINRIGKRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLISVERHYPMKNANN 137
+I +G A+ + +R+ + S + + V + +
Sbjct: 75 VKIKGVGIDKAVTICAAVELGRRLGELKITSTYEDFSQPYVIAQYVMERLRHETEEH 131
>gi|304437696|ref|ZP_07397648.1| DNA repair protein RadC [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369329|gb|EFM23002.1| DNA repair protein RadC [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 225
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 3/127 (2%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL--KRFATLGGVF 74
+ H R+R L G L+ E+L ++L + +A+ ++ R L +
Sbjct: 4 SDLPHGELPRERLLAHGAAVLSDAELLAVLLRTGRTGEHVLDLARGIVAQFREEGLAAIL 63
Query: 75 GAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKN 134
P I IG A + +R A L + + +
Sbjct: 64 RMPAAEFARIPGIGGAKAATVLAALELGRR-AYAGTHGMPHLNEAADVMTLLSARCHAER 122
Query: 135 ANNFAYC 141
+F
Sbjct: 123 REHFFVL 129
>gi|116494746|ref|YP_806480.1| DNA repair protein [Lactobacillus casei ATCC 334]
gi|116104896|gb|ABJ70038.1| DNA replication and repair protein RadC [Lactobacillus casei ATCC
334]
Length = 222
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 41/120 (34%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L G AL E+L+L++ K I +L + L G+ LL+ I
Sbjct: 8 PRERLLAHGPQALTDAELLQLVVRAGNQHYPVKQIVSEVLATYPKLQGLAEGDQGLLEHI 67
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G + +R ++ + + ++ + N + F
Sbjct: 68 RGLGAAKRASILAGVELGRRAMQRQTVRYGQIKNSEQLGKTMISRFAGVNQESMLILFLD 127
>gi|229552057|ref|ZP_04440782.1| DNA repair protein RadC [Lactobacillus rhamnosus LMS2-1]
gi|229314574|gb|EEN80547.1| DNA repair protein RadC [Lactobacillus rhamnosus LMS2-1]
Length = 236
Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 41/122 (33%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L G AL E+L+LI+ + I +L + L G+ L
Sbjct: 20 EQPRERLLAHGPQALTDAELLQLIVRAGNQHYPVQEIVSEVLTTYPALRGLAEGDGDSLD 79
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G + +R+++ + + ++ + N + F
Sbjct: 80 HIRGLGAAKRASILAGVELGRRVMRRQSVRYGQIKNSEQLGKTMVSRFAGANQESMLILF 139
Query: 143 SI 144
Sbjct: 140 LD 141
>gi|191638257|ref|YP_001987423.1| DNA repair protein (RadC) [Lactobacillus casei BL23]
gi|239631658|ref|ZP_04674689.1| DNA repair protein [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301066305|ref|YP_003788328.1| DNA repair protein [Lactobacillus casei str. Zhang]
gi|190712559|emb|CAQ66565.1| DNA repair protein (RadC) [Lactobacillus casei BL23]
gi|239526123|gb|EEQ65124.1| DNA repair protein [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300438712|gb|ADK18478.1| DNA repair protein [Lactobacillus casei str. Zhang]
gi|327382289|gb|AEA53765.1| DNA repair protein RadC [Lactobacillus casei LC2W]
gi|327385484|gb|AEA56958.1| DNA repair protein RadC [Lactobacillus casei BD-II]
Length = 222
Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 41/120 (34%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L G AL E+L+L++ K I +L + L G+ LL+ I
Sbjct: 8 PRERLLAHGPQALTDAELLQLVVRAGNQHYPVKQIVSEVLATYPKLQGLAEGDQGLLEHI 67
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G + +R ++ + + ++ + N + F
Sbjct: 68 RGLGAAKRASILAGVELGRRAMQRQTVRYGQIKNSEQLGKTMISRFAGVNQESMLILFLD 127
>gi|303229339|ref|ZP_07316129.1| putative DNA repair protein RadC [Veillonella atypica
ACS-134-V-Col7a]
gi|302515875|gb|EFL57827.1| putative DNA repair protein RadC [Veillonella atypica
ACS-134-V-Col7a]
Length = 232
Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 2/117 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLL 81
R R++F+ G +A E+L ++L + + + +A ++ F + G+ + L
Sbjct: 15 QRPREKFVALGPKQMAMEELLAILLRTGLKGQSSIDLAHTIIDSFTDGIHGLNHMTVDDL 74
Query: 82 QEINRIGKRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLISVERHYPMKNANN 137
+I +G A+ + +R+ + S + + V + +
Sbjct: 75 VKIKGVGIDKAVTICAAVELGRRLGELKITSTYEDFSQPYVIAQYVMERLRHETEEH 131
>gi|310819987|ref|YP_003952345.1| DNA repair protein RadC [Stigmatella aurantiaca DW4/3-1]
gi|309393059|gb|ADO70518.1| DNA repair protein RadC [Stigmatella aurantiaca DW4/3-1]
Length = 249
Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 12/135 (8%)
Query: 22 HNRL------RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFG 75
R R+R Q G +AL E+L ++L +A+ L+ L +
Sbjct: 16 RARPPGLDEVRERLFQLGASALTDPELLSVLLGPGTRTHH---LAEQLVSGLGGLKALIH 72
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
L +G ++ +R +A + L + + +
Sbjct: 73 MDPLQLCTRPWLGPVRTAQVLAALELGRRAQRAT-ERRPRLRTPKEIHLYLSPTLNALRR 131
Query: 136 NNFAYCFSI--NIIF 148
F N++
Sbjct: 132 EVFHVLCFNPRNVLL 146
>gi|199597494|ref|ZP_03210923.1| DNA repair protein [Lactobacillus rhamnosus HN001]
gi|199591517|gb|EDY99594.1| DNA repair protein [Lactobacillus rhamnosus HN001]
Length = 222
Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 41/122 (33%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L G AL E+L+LI+ + I +L + L G+ L
Sbjct: 6 EQPRERLLAHGPQALTDAELLQLIVRAGNQHYPVQEIVSEVLTTYPALRGLAEGDGDSLD 65
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G + +R+++ + + ++ + N + F
Sbjct: 66 HIRGLGAAKRASILAGVELGRRVMRRQSVRYGQIKNSEQLGKTMVSRFAGANQESMLILF 125
Query: 143 SI 144
Sbjct: 126 LD 127
>gi|258508259|ref|YP_003171010.1| DNA repair protein radC [Lactobacillus rhamnosus GG]
gi|258539471|ref|YP_003173970.1| DNA repair protein radC [Lactobacillus rhamnosus Lc 705]
gi|257148186|emb|CAR87159.1| DNA repair protein radC [Lactobacillus rhamnosus GG]
gi|257151147|emb|CAR90119.1| DNA repair protein radC [Lactobacillus rhamnosus Lc 705]
gi|259649577|dbj|BAI41739.1| DNA repair protein [Lactobacillus rhamnosus GG]
Length = 222
Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 41/122 (33%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R+R L G AL E+L+LI+ + I +L + L G+ L
Sbjct: 6 EQPRERLLAHGPQALTDAELLQLIVRAGNQHYPVQEIVSEVLTTYPALRGLAEGDGDSLD 65
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G + +R+++ + + ++ + N + F
Sbjct: 66 HIRGLGAAKRASILAGVELGRRVMRRQSVRYGQIKNSEQLGKTMVSRFAGANQESMLILF 125
Query: 143 SI 144
Sbjct: 126 LD 127
>gi|296273006|ref|YP_003655637.1| DNA repair protein RadC [Arcobacter nitrofigilis DSM 7299]
gi|296097180|gb|ADG93130.1| DNA repair protein RadC [Arcobacter nitrofigilis DSM 7299]
Length = 220
Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 8/128 (6%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
++ R+R L+ G ++L YE++ ++L + KD ++ + K F + L L
Sbjct: 11 DKPRERLLKYGLSSLKNYELIAVLLGSGVKGKDVIKLSHEIEKFFDSN--FENIDLKTLL 68
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I+ +G A ++ S+R L + ++ Y K F +
Sbjct: 69 KIHGLGTAKASQIISAIELSRRYLIDT--QNYKINFASDVYEELKP-YKNKRQEYFLTLY 125
Query: 143 SI---NII 147
N+I
Sbjct: 126 LDGANNLI 133
>gi|24379492|ref|NP_721447.1| DNA repair protein RadC [Streptococcus mutans UA159]
gi|24377431|gb|AAN58753.1|AE014944_3 putative DNA repair protein RadC [Streptococcus mutans UA159]
Length = 209
Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 50/115 (43%)
Query: 30 LQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGK 89
+ G +L+ E+L ++L ++ +++ +L +L L LQEI IG+
Sbjct: 1 MTYGPESLSNQELLAILLRTGTKKEHVLNLSIKILNGLDSLADFRSLSLEELQEIEGIGQ 60
Query: 90 RVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++E+K + S+RI +A ++ K+ + + + K + +
Sbjct: 61 VRSVEIKAMLELSKRINQAEYNFKERILSSERLAKIMMSELGDKRQEHLIAIYLD 115
>gi|154499911|ref|ZP_02037949.1| hypothetical protein BACCAP_03568 [Bacteroides capillosus ATCC
29799]
gi|150271509|gb|EDM98766.1| hypothetical protein BACCAP_03568 [Bacteroides capillosus ATCC
29799]
Length = 233
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
D+ GH +RLR F+ + + +++LEL+LF ++PR+DT +A LL RF +L
Sbjct: 5 GKDMADHTGHRDRLRKEFMAR-PESFPDHKVLELLLFYVLPRQDTNPLAHDLLDRFGSLQ 63
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
GV AP L ++ +G+R A+ + V +R + S++ + + E +
Sbjct: 64 GVLDAPPEALSQVKGVGERAAVLFRAVKELGRRYGVSRASLEDIVDSTRAAREVFEPLFY 123
Query: 132 MKNANNFAYCFSI 144
Sbjct: 124 GARNEMVYLLCMD 136
>gi|288917999|ref|ZP_06412358.1| DNA repair protein RadC [Frankia sp. EUN1f]
gi|288350654|gb|EFC84872.1| DNA repair protein RadC [Frankia sp. EUN1f]
Length = 223
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 35/86 (40%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H R R+R L +G ALA E+L ++L P +D +A L+ R L + A L
Sbjct: 9 HERPRERVLARGVEALADRELLAILLGSGAPGRDAVELAARLIARHGGLHDLSRADPQEL 68
Query: 82 QEINRIGKRVALELKLVSVASQRILK 107
+G A + R+
Sbjct: 69 TCQPGVGPAKAARICAAFHLGHRVRA 94
>gi|291542539|emb|CBL15649.1| DNA repair proteins [Ruminococcus bromii L2-63]
Length = 235
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
++ + ++ GH R+R +F++ G + +E LE+ L+ IPRKDT +A LL R+ T+
Sbjct: 2 ARTTDNEHSGHRERMRKKFIENGFDVFETHEALEMFLYYAIPRKDTNPLAHRLLDRYITV 61
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
GGV AP+ L + + + A LK++ ++ ++ S + + + +
Sbjct: 62 GGVCDAPIDELMKEFGLSENAAALLKMLPEMARLYTESKMSHDNIID-YENLGKIFKAKF 120
Query: 131 PMKNANNFAYCF 142
+ A
Sbjct: 121 IGRTNECVALML 132
>gi|148654928|ref|YP_001275133.1| DNA repair protein RadC [Roseiflexus sp. RS-1]
gi|166218791|sp|A5URD0|Y767_ROSS1 RecName: Full=UPF0758 protein RoseRS_0767
gi|148567038|gb|ABQ89183.1| DNA repair protein RadC [Roseiflexus sp. RS-1]
Length = 233
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 44/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
++ R+R G ALA E+L ++L I + +A+ LL F G+ A L
Sbjct: 15 DKPRERLRSSGAAALADAELLAILLRVGIEGMNAIQLAQQLLVEFGGWNGLQRAGFEELA 74
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G+ +LK +R+L A + + ++ +
Sbjct: 75 QRRGMGEAKTAQLKAALEIGRRLLLAGGDERFLIRSPTDAAQLMQIEMSHLDQEQLRAIC 134
Query: 143 SI 144
Sbjct: 135 LD 136
>gi|227824844|ref|ZP_03989676.1| DNA repair protein radC [Acidaminococcus sp. D21]
gi|226905343|gb|EEH91261.1| DNA repair protein radC [Acidaminococcus sp. D21]
Length = 229
Score = 88.1 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 1/128 (0%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
I R R+R QKG AL+ E+L +++ IA L R L +
Sbjct: 8 HEIVREERPRERLKQKGAKALSVTELLTILIGSGTRSASALEIASLLTSREMDLDQLARV 67
Query: 77 P-LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ L + +G A + +R+ + + V +
Sbjct: 68 TRIEELTHVKGLGPARASVIVAALELGRRLAEKTSRQGDRIRCPGDAARMVMERLRYEVK 127
Query: 136 NNFAYCFS 143
+
Sbjct: 128 EHVLTLLL 135
>gi|317507551|ref|ZP_07965270.1| DNA repair protein RadC [Segniliparus rugosus ATCC BAA-974]
gi|316254152|gb|EFV13503.1| DNA repair protein RadC [Segniliparus rugosus ATCC BAA-974]
Length = 216
Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H+R R+R L+ G AL+ E++ + L R +A ALL + + G+ A L
Sbjct: 7 HDRPRERLLRHGSAALSEAELVAVQLGSGHARASALDVAHALLTAWGGVRGLARALPEEL 66
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G A L + R+ L R M A
Sbjct: 67 ARTPGVGPAKAARLAASFALAGRMGA--PDEAVQLVQSADIARVASRVLGMSRVEQVAVL 124
>gi|197124274|ref|YP_002136225.1| DNA repair protein RadC [Anaeromyxobacter sp. K]
gi|196174123|gb|ACG75096.1| DNA repair protein RadC [Anaeromyxobacter sp. K]
Length = 235
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 2/122 (1%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R+R L G AL+ E+L L+L R ++ A +L++ + + AP L
Sbjct: 21 DRPRERLLAAGPRALSDAELLALVLGTGTGRVSARAAALSLVEALP-VAELAWAPPDALA 79
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
IG A L +R + + + + F
Sbjct: 80 SWPGIGVARAAALAAAFELGRRGAWSPPRRGERCLDPRTVHELLRHA-AHAEREGFHVVL 138
Query: 143 SI 144
Sbjct: 139 LD 140
>gi|294617319|ref|ZP_06696959.1| DNA repair protein RadC [Enterococcus faecium E1679]
gi|291596428|gb|EFF27681.1| DNA repair protein RadC [Enterococcus faecium E1679]
Length = 187
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 45/120 (37%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R AL+ E+L ++L SIA LLK F L + A LH L+EI
Sbjct: 15 PRERMEIYAAEALSDQELLAILLCTGQHPYSVMSIAGNLLKTFGGLASLRQATLHELEEI 74
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG+ A+E+K + +RI + + + + +
Sbjct: 75 RGIGRVKAIEIKALIELGRRIQTDHERATPPVRTSYELAQQLILEMKDHKQEHLVCIYLD 134
>gi|163785136|ref|ZP_02179835.1| DNA repair protein RadC [Hydrogenivirga sp. 128-5-R1-1]
gi|159879597|gb|EDP73402.1| DNA repair protein RadC [Hydrogenivirga sp. 128-5-R1-1]
Length = 212
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +L+ E+L + L + ++ ++K+F + + L L +I
Sbjct: 21 PREKALKYGIQSLSESELLAIALGSGTKGMNVIGLSDLIMKKFG-IDNLKNVKLEDLTKI 79
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IGK AL++ ++ ++R+ K L+ V+ + ++
Sbjct: 80 KGIGKTKALQILAIAEFAKRVCNEE--EKTVLSSPSDVYEIVK-DLKNERQEKLLAIYTN 136
>gi|257126874|ref|YP_003164988.1| DNA repair protein RadC [Leptotrichia buccalis C-1013-b]
gi|257050813|gb|ACV39997.1| DNA repair protein RadC [Leptotrichia buccalis C-1013-b]
Length = 240
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
E+ +++ K S GH RLR RFL G YE+LEL+L + RK+ + IAK
Sbjct: 4 ENKKLAILKEKLSEEQEKGHRERLRQRFLSTGTKGFLDYELLELLLTYTVIRKNCRGIAK 63
Query: 62 ALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQ 120
LLK++ L + LQ+ + +R + LKL+S + L KK +T
Sbjct: 64 NLLKKYGDLYTILQQSEEELQKNKYMTERTVVFLKLLSEIIENGLYKKIHNKKISITSNI 123
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
L ++ ++ F F
Sbjct: 124 KLLNYLKCSLLKRDIEVFKVLFLN 147
>gi|258514688|ref|YP_003190910.1| DNA repair protein RadC [Desulfotomaculum acetoxidans DSM 771]
gi|257778393|gb|ACV62287.1| DNA repair protein RadC [Desulfotomaculum acetoxidans DSM 771]
Length = 227
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 6/119 (5%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
R+R L G + L E++ +L A L+ + G+ + L E+
Sbjct: 22 RERGLNYGTSVLNDAELVMTLLGIN------LEKAMNLINIINGIRGLMDVSVEQLAEVK 75
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G AL LK QRI K + + V + +F
Sbjct: 76 GVGNSKALALKAAVEIGQRIAKTKAMECPSVKTPDDAVNYVMEEMRYMDREHFKALLLN 134
>gi|329121132|ref|ZP_08249763.1| DNA repair protein RadC [Dialister micraerophilus DSM 19965]
gi|327471294|gb|EGF16748.1| DNA repair protein RadC [Dialister micraerophilus DSM 19965]
Length = 246
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 5/126 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL---LKRFATLGGVFGAPLH 79
++ R+RF +NA +++ ++L + IA+ + L+RF +
Sbjct: 29 DKPRERFAISPKNARM-ADLIAILLRTGRQGRSVLEIAEDVIDELERFTDVSMFDDLDWR 87
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWS-IKKFLTPGQPCLISVERHYPMKNANNF 138
L I+ IGK A+ L +R+ K KN +F
Sbjct: 88 DLVHIDGIGKDKAITLCAAIELGRRLSSRFLKTELKNFGNPSNVAKYFMEELRHKNQEHF 147
Query: 139 AYCFSI 144
C+
Sbjct: 148 LVCYLN 153
>gi|22299250|ref|NP_682497.1| DNA repair protein RadC [Thermosynechococcus elongatus BP-1]
gi|32699671|sp|Q8DI83|Y1707_THEEB RecName: Full=UPF0758 protein tlr1707
gi|22295432|dbj|BAC09259.1| DNA repair protein [Thermosynechococcus elongatus BP-1]
Length = 250
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 10/132 (7%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIP--RKDTKSIAKALLKRFATL--------GG 72
+R R++ L +G L+ E+L ++L + + + +LK+
Sbjct: 15 DRPREKLLSQGARYLSSAELLAILLGTGQGAGKLSAVGLGQFILKQLGERTGDSTDAVSA 74
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
+ L I +G A + +R+ ++ + + +
Sbjct: 75 LRDITPEELMAIPGVGPAKATTILAAVELGKRVFQSRPGEQTIIDSPALAAAVLAADLMW 134
Query: 133 KNANNFAYCFSI 144
+ FA
Sbjct: 135 QATERFAVLLLD 146
>gi|167957117|ref|ZP_02544191.1| DNA repair protein RadC [candidate division TM7 single-cell isolate
TM7c]
gi|169836908|ref|ZP_02870096.1| DNA repair protein RadC [candidate division TM7 single-cell isolate
TM7a]
Length = 214
Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 5/122 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ + G L+ E+L I+ + D IA+ +LK GG L+
Sbjct: 10 ERPREKLARYGTARLSDLELLMAIIGSGNKQADVGKIAREVLKIVRQKGG--DISYDDLR 67
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G+ + ++R L S + + + + + K F
Sbjct: 68 YVVGLGEAKIPVIVASLELARRYLLD--SDQPIIDSPEKAVELL-SDIRDKKQEYFVCLT 124
Query: 143 SI 144
Sbjct: 125 LD 126
>gi|258590906|emb|CBE67201.1| DNA repair protein radC homolog [NC10 bacterium 'Dutch sediment']
Length = 236
Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 61/134 (45%)
Query: 11 SKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL 70
++++ GH RLR R+ GE AL YE+LEL+L IPR+DTK +AK LL+RF TL
Sbjct: 10 AREAKNYVAGHRERLRARYRLSGEVALQDYELLELLLTYAIPRRDTKLLAKRLLERFGTL 69
Query: 71 GGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHY 130
V A L+ I+ +G + A + L+ + R L + K L +
Sbjct: 70 ARVVEAEPAALEAIDGMGPQAATLISLIRPLATRFLTEAPAPKILLRSTGDAEAYFQAKL 129
Query: 131 PMKNANNFAYCFSI 144
F
Sbjct: 130 KGLPEEEVHVAFVN 143
>gi|313891737|ref|ZP_07825342.1| DNA repair protein RadC [Dialister microaerophilus UPII 345-E]
gi|313119731|gb|EFR42918.1| DNA repair protein RadC [Dialister microaerophilus UPII 345-E]
Length = 227
Score = 86.2 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 5/126 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL---LKRFATLGGVFGAPLH 79
++ R+RF +NA +++ ++L + IA+ + L+RF +
Sbjct: 10 DKPRERFAISPKNARM-ADLIAILLRTGRQGRSVLEIAEDVIDELERFTDVSMFDDLDWR 68
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWS-IKKFLTPGQPCLISVERHYPMKNANNF 138
L I+ IGK A+ L +R+ K KN +F
Sbjct: 69 DLVHIDGIGKDKAITLCAAIELGRRLSSRFLKTELKNFGNPSNVAKYFMEELRHKNQEHF 128
Query: 139 AYCFSI 144
C+
Sbjct: 129 LVCYLN 134
>gi|152991449|ref|YP_001357171.1| DNA repair protein RadC [Nitratiruptor sp. SB155-2]
gi|151423310|dbj|BAF70814.1| DNA repair protein RadC [Nitratiruptor sp. SB155-2]
Length = 220
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ R++ L+KG AL YE++ ++L + KD ++K ++K F + L
Sbjct: 12 EKPREKLLEKGAKALKDYELVAILLGSGVKGKDVIKLSKEIIKLFQQ--DFDAINIEKLL 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I+ +G A ++ S+R L + K + ++ ++ K F +
Sbjct: 70 QIHELGIAKAAQIVSAVELSKRYL---FKQHKTVISANDVYEELKEYF-DKKQEYFIAFY 125
Query: 143 SI 144
Sbjct: 126 LD 127
>gi|317132479|ref|YP_004091793.1| DNA repair protein RadC [Ethanoligenens harbinense YUAN-3]
gi|315470458|gb|ADU27062.1| DNA repair protein RadC [Ethanoligenens harbinense YUAN-3]
Length = 242
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGA 76
+ GH RL+ RF +G + + ILE+ILF +PR+DT ++ LL F L VF A
Sbjct: 9 HEGHRERLKARFAAEGLDHFEPHVILEMILFYSLPRRDTNELSHRLLDAFGGSLSSVFDA 68
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
PL LQ++ IG+ A+ LKL +R L + + + + + + A
Sbjct: 69 PLEELQKVPGIGQNTAILLKLFPEVCRRYLMDLSDAGRIVRDSEDAAKYLLPFFMGRTAE 128
Query: 137 NFAYCFSI 144
A
Sbjct: 129 IVALMCID 136
>gi|220919048|ref|YP_002494352.1| DNA repair protein RadC [Anaeromyxobacter dehalogenans 2CP-1]
gi|219956902|gb|ACL67286.1| DNA repair protein RadC [Anaeromyxobacter dehalogenans 2CP-1]
Length = 235
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 2/121 (1%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R L G AL+ E+L L+L R ++ A +L++ L + AP L
Sbjct: 22 RPRERLLAAGPRALSDAELLALVLGTGTGRVSARAAALSLVEALP-LPELAWAPPDALAS 80
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
IG A L +R + + + + F
Sbjct: 81 WPGIGVARAAALAAAFELGRRGAWSPPRRGERCLDPRSVHELLRHA-AHAEREGFHVVLL 139
Query: 144 I 144
Sbjct: 140 D 140
>gi|162454769|ref|YP_001617136.1| DNA repair protein [Sorangium cellulosum 'So ce 56']
gi|161165351|emb|CAN96656.1| DNA repair protein [Sorangium cellulosum 'So ce 56']
Length = 259
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 42/120 (35%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R L++G +L ++L ++L + ++ ALL RFA L G+ H L E
Sbjct: 31 PRERALEEGIWSLGDADLLAIVLGTGLVGTPVTLVSAALLSRFAGLEGLARLGPHALAEH 90
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G AL + +R + + + + +
Sbjct: 91 PGLGLAKALRIAASLELGRRAFERSVRPRPPVRTSASIAAWCAAQLGPLDHEQMWVISLD 150
>gi|307945547|ref|ZP_07660883.1| putative DNA repair RadC-like protein [Roseibium sp. TrichSKD4]
gi|307771420|gb|EFO30645.1| putative DNA repair RadC-like protein [Roseibium sp. TrichSKD4]
Length = 237
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 52/113 (46%)
Query: 32 KGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRV 91
GE AL YE+LEL+LF +PR+DTK +AKALL +F + V AP L+E++ IG
Sbjct: 32 GGEPALPDYELLELLLFSALPRRDTKKVAKALLAKFGSFSAVLSAPRARLKEVSGIGDVA 91
Query: 92 ALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L + A R + + + L + V+ F F
Sbjct: 92 VDTLHAIHAAVIRANREDIRDRPLLDSWSKVIAHVQNAMGHLTIEQFRILFLD 144
>gi|330941096|gb|EGH43996.1| hypothetical protein PSYPI_17000 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 80
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L+ G +L+ E+L + L + K +A+ LLK+F L + A L +
Sbjct: 10 ERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLKQFDGLRPLLDADLSVFT 69
Query: 83 EINRIGKRVAL 93
+G
Sbjct: 70 SQLGLGPAKFA 80
>gi|86160242|ref|YP_467027.1| DNA repair protein RadC [Anaeromyxobacter dehalogenans 2CP-C]
gi|85776753|gb|ABC83590.1| DNA replication and repair protein RadC [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 235
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 2/121 (1%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R R+R L G AL+ E+L L+L R ++ A +L++ L + AP L
Sbjct: 22 RPRERLLAAGPRALSDAELLALVLGTGTGRVSARAAALSLVEALP-LAELAWAPPDALAS 80
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
IG A L +R + + + + F
Sbjct: 81 WPGIGVARAAALAAAFELGRRGAWSPPRRGERCLDPRTVHELLRHA-AHAEREGFHVVLL 139
Query: 144 I 144
Sbjct: 140 D 140
>gi|254796615|ref|YP_003081451.1| DNA repair protein RadC [Neorickettsia risticii str. Illinois]
gi|254589855|gb|ACT69217.1| DNA repair protein RadC [Neorickettsia risticii str. Illinois]
Length = 147
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 54/124 (43%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR R +Q ++ E+LE +LF PR D K +AK+LLK F +F A
Sbjct: 19 GHRLRLRQRIIQSAGGTISELELLEYLLFGTHPRIDVKPLAKSLLKEFGDFKKLFAADHD 78
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L+ ++ + V +K V + + IL+ + + + L + + +
Sbjct: 79 DLKSVSGVNDAVVALIKTVRESMKAILRKDLTSRTTLKSWKSVVDYLRLSIGNNPVETIR 138
Query: 140 YCFS 143
F
Sbjct: 139 SFFL 142
>gi|289449440|ref|YP_003475202.1| DNA repair protein RadC [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289183987|gb|ADC90412.1| DNA repair protein RadC [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 239
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 8/138 (5%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL-------KRF 67
L + +R ++ L++G L E+L L+L P D +++ ++
Sbjct: 3 KLKDLIEKDRPLEKCLEQGAKVLNDSELLALLLGNGSPDCDVLNLSCRIINGITVRCNEH 62
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKAN-WSIKKFLTPGQPCLISV 126
+ L IGK + RI AN + +
Sbjct: 63 ESFYNYALLNYRYLSNFPGIGKVKISRIMAAIELGLRIAAANPVKKLPLVNRPDLVAKYL 122
Query: 127 ERHYPMKNANNFAYCFSI 144
+ + F
Sbjct: 123 YQEMSYLDHEEIYGVFLN 140
>gi|332188698|ref|ZP_08390412.1| DNA repair RadC family protein [Sphingomonas sp. S17]
gi|332011262|gb|EGI53353.1| DNA repair RadC family protein [Sphingomonas sp. S17]
Length = 229
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 52/105 (49%)
Query: 40 YEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVS 99
+E++E +L IPR+DTK IAKALL+ F +GGV A L+ ++ +G+ A LK+
Sbjct: 32 HELIEYLLTTAIPRRDTKPIAKALLREFHDIGGVLTADPIALRRVDGVGETAAAALKIAH 91
Query: 100 VASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ R+++A + + L+ Q L + F
Sbjct: 92 ACALRLVQAEAAKRPILSNWQALLDYLHADMAHHAVERFRVLHLN 136
>gi|302037820|ref|YP_003798142.1| DNA repair protein RadC-like protein [Candidatus Nitrospira
defluvii]
gi|300605884|emb|CBK42217.1| DNA repair protein RadC homolog [Candidatus Nitrospira defluvii]
Length = 220
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ L+ G L+ E+L ++L + D ++A L K G A L+
Sbjct: 12 DRPREKLLRNGAAVLSDQELLAVLLGKGTSGVDVMTLAAKLAKVIDAKGLAVRAD--DLR 69
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
+ +G A + ++R +K + L V HY + +F
Sbjct: 70 AFDGVGDAKATLILAALEFARRRIK---PEGAKIQTPADLLPHVR-HYADRKQEHFLC 123
>gi|320537630|ref|ZP_08037565.1| putative DNA repair protein RadC [Treponema phagedenis F0421]
gi|320145509|gb|EFW37190.1| putative DNA repair protein RadC [Treponema phagedenis F0421]
Length = 228
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
LR+R L+KG ++L+ E+L ++L I K +A+ + L I
Sbjct: 9 LRERLLEKGADSLSDSELLAILLRTGIKGKSVMQLAEEISMHADRHQA-ENIDRILY-SI 66
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
+G+ + +R + + ++ + HY + F
Sbjct: 67 KGMGEGKITTILAAFELGRRYYG---VGNQKIKHPSDIVLFLR-HYATRKQEQFIV 118
>gi|254482762|ref|ZP_05096000.1| DNA repair protein RadC [marine gamma proteobacterium HTCC2148]
gi|214037121|gb|EEB77790.1| DNA repair protein RadC [marine gamma proteobacterium HTCC2148]
Length = 193
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 36/101 (35%)
Query: 45 LILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQR 104
++L + + +AK LL++F L G+ A L IG L+ ++R
Sbjct: 1 MLLQTGYRQCNAVVLAKELLQQFGGLTGLMRADASSLLAFQGIGDAKYALLQASIELARR 60
Query: 105 ILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
L+ + ++ H + F+ F N
Sbjct: 61 RALQELQGADVLSSPGQTRLFLQHHLGSRVREVFSVIFLDN 101
>gi|37523034|ref|NP_926411.1| DNA repair protein RadC [Gloeobacter violaceus PCC 7421]
gi|35214037|dbj|BAC91406.1| DNA repair protein [Gloeobacter violaceus PCC 7421]
Length = 242
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 36/130 (27%), Gaps = 8/130 (6%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIP--RKDTKSIAKALLKRFATLG-----GVFG 75
R R+R L G LA E+L ++ R +A+ +L G +
Sbjct: 17 ERPRERLLTHGARGLATAELLAVLFGGGQAAVRLSALGLAQQVLHTLGRAGGEPLVHLRD 76
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWS-IKKFLTPGQPCLISVERHYPMKN 134
L +G A + +R+ S + + Q +
Sbjct: 77 VSAAELMLQPGVGPARAAAVLAAIELGRRVFVVRSSGERPVIDGPQAVAAVLGGELAFAR 136
Query: 135 ANNFAYCFSI 144
FA
Sbjct: 137 QEQFAVLLLD 146
>gi|154149630|ref|YP_001403248.1| DNA repair protein RadC [Candidatus Methanoregula boonei 6A8]
gi|153998182|gb|ABS54605.1| DNA repair protein RadC [Methanoregula boonei 6A8]
Length = 220
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ KG AL E++E I+ R +P +D ++IA+ ++ + L
Sbjct: 11 DRPREKIAHKGVQALNDAELIEAIIGRGLPGRDVRAIARDIVLLLSDPAR--QVRYEDLL 68
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
EI+ G A ++ +R + S + + L + Y K +F
Sbjct: 69 EIDGAGPARAAQIMACLELGRR--RYGPSDAVKIRTPEDVLP-LVGQYRDKPQEHFICI 124
>gi|56750332|ref|YP_171033.1| DNA repair protein RadC [Synechococcus elongatus PCC 6301]
gi|81300036|ref|YP_400244.1| DNA repair protein RadC [Synechococcus elongatus PCC 7942]
gi|56685291|dbj|BAD78513.1| DNA repair protein RadC [Synechococcus elongatus PCC 6301]
gi|81168917|gb|ABB57257.1| DNA repair protein RadC [Synechococcus elongatus PCC 7942]
Length = 244
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 7/133 (5%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIP--RKDTKSIAKALL-----KRFATLG 71
+ R R+R ++ G ++L+ E+L ++L + + LL + L
Sbjct: 11 LPEDERPRERLMRSGASSLSTAELLAILLGTGQGPGGLSAVGLGQLLLSQLGEHQREPLR 70
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
+ + L +I IG A + +RI + S +T + ++
Sbjct: 71 VLRQITVTELMQIPGIGPAKATAIAAAIELGKRIYQTTTSELLPITSPEAAAKALSADLM 130
Query: 132 MKNANNFAYCFSI 144
FA
Sbjct: 131 WAEQERFALLLLD 143
>gi|156740065|ref|YP_001430194.1| DNA repair protein RadC [Roseiflexus castenholzii DSM 13941]
gi|189029400|sp|A7NFF4|Y037_ROSCS RecName: Full=UPF0758 protein Rcas_0037
gi|156231393|gb|ABU56176.1| DNA repair protein RadC [Roseiflexus castenholzii DSM 13941]
Length = 233
Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 45/122 (36%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
++ R+R G ALA E+L ++L + + +A+ LL F G+ A L
Sbjct: 15 DKPRERLRASGAAALADAELLAILLRVGVEGVNAIQLAQQLLVEFGGWSGLQRAGFEELA 74
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G+ +LK +R+L A+ + + ++ +
Sbjct: 75 QRRGMGEAKTAQLKAALEIGRRLLLASGEERFQIRSPTDAAQLMQIEMSHLDQEQLRAIC 134
Query: 143 SI 144
Sbjct: 135 LD 136
>gi|314938909|ref|ZP_07846176.1| DNA repair protein RadC [Enterococcus faecium TX0133a04]
gi|314943095|ref|ZP_07849896.1| DNA repair protein RadC [Enterococcus faecium TX0133C]
gi|314948108|ref|ZP_07851509.1| DNA repair protein RadC [Enterococcus faecium TX0082]
gi|314951626|ref|ZP_07854671.1| DNA repair protein RadC [Enterococcus faecium TX0133A]
gi|314993869|ref|ZP_07859203.1| DNA repair protein RadC [Enterococcus faecium TX0133B]
gi|314996710|ref|ZP_07861733.1| DNA repair protein RadC [Enterococcus faecium TX0133a01]
gi|313589148|gb|EFR67993.1| DNA repair protein RadC [Enterococcus faecium TX0133a01]
gi|313591679|gb|EFR70524.1| DNA repair protein RadC [Enterococcus faecium TX0133B]
gi|313596222|gb|EFR75067.1| DNA repair protein RadC [Enterococcus faecium TX0133A]
gi|313598197|gb|EFR77042.1| DNA repair protein RadC [Enterococcus faecium TX0133C]
gi|313641783|gb|EFS06363.1| DNA repair protein RadC [Enterococcus faecium TX0133a04]
gi|313645444|gb|EFS10024.1| DNA repair protein RadC [Enterococcus faecium TX0082]
Length = 212
Score = 83.9 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 43/113 (38%)
Query: 32 KGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRV 91
G AL+ E+L ++L SIA LLK F L + A LH L+EI IG+
Sbjct: 4 YGAEALSDQELLAILLRTGQHPYSVMSIAGNLLKTFGGLASLRQATLHELEEIRGIGRVK 63
Query: 92 ALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
A+E+K + +RI + + + + +
Sbjct: 64 AIEIKALIELGRRIQTDHERAAPPVRTSYELAQQLILEMKDHKQEHLVCIYLD 116
>gi|42526485|ref|NP_971583.1| DNA repair protein RadC [Treponema denticola ATCC 35405]
gi|41816678|gb|AAS11464.1| DNA repair protein RadC [Treponema denticola ATCC 35405]
Length = 225
Score = 83.9 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 13/133 (9%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
K S D +R+R L+ G L+ +++ ++L I K K +A ++
Sbjct: 5 KNSSNTDKPD-------MRERLLEYGPQNLSDSDLVAILLRTGIKDKPVKELADDIILHI 57
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
L+ I +G + +R ++ + ++
Sbjct: 58 DRARP--EKIEGYLRSIRGMGDSKISTVLAAMELGRRYYDNKNR---TISHPTDVVPLLQ 112
Query: 128 RHYPMKNANNFAY 140
HY ++ +F
Sbjct: 113 -HYADRDREHFIC 124
>gi|325473429|gb|EGC76624.1| DNA repair protein RadC [Treponema denticola F0402]
Length = 225
Score = 83.5 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 13/133 (9%)
Query: 8 KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF 67
K S D +R+R L+ G L+ +++ ++L I K K +A ++
Sbjct: 5 KNSSNTDKPD-------MRERLLEYGPQNLSDSDLVAILLRTGIKDKPVKELADDIILHI 57
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE 127
L+ I +G + +R ++ + ++
Sbjct: 58 DRARP--EKIEGYLRSIRGMGDSKISTVLAALELGRRYYDNKNR---TISHPTDVVPLLQ 112
Query: 128 RHYPMKNANNFAY 140
HY ++ +F
Sbjct: 113 -HYADRDREHFIC 124
>gi|260890567|ref|ZP_05901830.1| DNA repair protein RadC [Leptotrichia hofstadii F0254]
gi|260859809|gb|EEX74309.1| DNA repair protein RadC [Leptotrichia hofstadii F0254]
Length = 239
Score = 83.5 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 12 KDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLG 71
K + GH RLR RFL G YE+LEL+L + RK+ + IAK LLK++ L
Sbjct: 13 KLAEEQEKGHRERLRQRFLSTGAKGFLDYELLELLLTYTVIRKNCRGIAKNLLKKYGDLY 72
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHY 130
+ P L++ I +R + LKL+ + L KK L+ + +E
Sbjct: 73 TLLKQPEEELRKNKYITERTIVFLKLLFEIIENGLYKKVHNKKITLSSNVKLMNYLEYSL 132
Query: 131 PMKNANNFAYCFSI 144
++ F F
Sbjct: 133 LKRDIEVFKVLFLN 146
>gi|225851003|ref|YP_002731237.1| DNA repair protein RadC [Persephonella marina EX-H1]
gi|225646279|gb|ACO04465.1| DNA repair protein RadC [Persephonella marina EX-H1]
Length = 229
Score = 83.5 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 4/120 (3%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G ++L+ E+L L L + + +A L+ + L + + L +I
Sbjct: 21 PREKALKYGISSLSDIELLALSLGQGTKDLNVLGLA-DLILKNRKLKDLKDLKIEDLTKI 79
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IGK AL++ + +R+ ++ + ++
Sbjct: 80 KGIGKAKALQILSIGEIIKRV--EEDEESIIFEKPSDVFKHIK-WLSKEKQEKMLVLYTN 136
>gi|302339965|ref|YP_003805171.1| DNA repair protein RadC [Spirochaeta smaragdinae DSM 11293]
gi|301637150|gb|ADK82577.1| DNA repair protein RadC [Spirochaeta smaragdinae DSM 11293]
Length = 227
Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 6/122 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R G + L+ E+L +IL I D +A ALLK T + ++
Sbjct: 17 ERPRERLSAFGPSTLSDKELLTIILGSGIKGNDVGHLASALLKLLDT--SDLHCTVDQIR 74
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I IG+ A + S+R K +T L V H + F
Sbjct: 75 TIPGIGRAKAALVAAALEFSRRRF---VPAKNKITSPADVLPLVR-HLADRPQEQFLALS 130
Query: 143 SI 144
Sbjct: 131 LN 132
>gi|126664654|ref|ZP_01735638.1| DNA repair protein RadC [Marinobacter sp. ELB17]
gi|126630980|gb|EBA01594.1| DNA repair protein RadC [Marinobacter sp. ELB17]
Length = 184
Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 28/92 (30%)
Query: 54 KDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIK 113
+A+ LLK F L + A + +G +++ ++R+ +
Sbjct: 1 MPVMEMARYLLKTFGGLRSLMTASSRQFCSVKGLGTAKYAQMQAAMEMARRVTEEPLRQG 60
Query: 114 KFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
L + + FA F N
Sbjct: 61 DPLKSPEDTRRFLASRLGTYPHEVFAALFLDN 92
>gi|229829061|ref|ZP_04455130.1| hypothetical protein GCWU000342_01146 [Shuttleworthia satelles DSM
14600]
gi|229792224|gb|EEP28338.1| hypothetical protein GCWU000342_01146 [Shuttleworthia satelles DSM
14600]
Length = 241
Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 1/118 (0%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-RFATLGGVFGAPLHLLQEINR 86
+ + G AL E++ ++L D ++A+ LL+ R +L + L I
Sbjct: 31 KLDRCGCAALTDAELIAILLRSGTRDCDVLAMAEELLRLRQHSLADLVNISRDELMLIPG 90
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A EL+ V S+RI K LT + +++ +
Sbjct: 91 IGPVKARELQSVFELSRRIASNTRRRKLKLTETKSIAGYYMERLRHEDSELLVAAYFN 148
>gi|256004185|ref|ZP_05429168.1| DNA repair protein RadC [Clostridium thermocellum DSM 2360]
gi|281419441|ref|ZP_06250455.1| DNA repair protein RadC [Clostridium thermocellum JW20]
gi|255991775|gb|EEU01874.1| DNA repair protein RadC [Clostridium thermocellum DSM 2360]
gi|281406847|gb|EFB37111.1| DNA repair protein RadC [Clostridium thermocellum JW20]
gi|316939647|gb|ADU73681.1| DNA repair protein RadC [Clostridium thermocellum DSM 1313]
Length = 221
Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 7/123 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L++G L+ E+L +++ ++A +LK G LQ
Sbjct: 11 ERPREKLLERGVGYLSDLELLAVLIGNGTKDCSVMNVAGKVLKVLD--KGCDRVSARELQ 68
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
EI +G + + ++R ++ +T L + + + +F C
Sbjct: 69 EIEGVGPAKSAVIAAALEFARRRIR---PEGIKITSACDILP-LISYLANRKQEHF-VCV 123
Query: 143 SIN 145
S+N
Sbjct: 124 SLN 126
>gi|300923423|ref|ZP_07139464.1| DNA repair protein RadC domain protein [Escherichia coli MS
182-1]
gi|300420333|gb|EFK03644.1| DNA repair protein RadC domain protein [Escherichia coli MS
182-1]
Length = 86
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+ + +
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGV 71
Query: 85 NRIGKRVALELKL 97
+ IG +LK
Sbjct: 72 HGIGVAKFAQLKG 84
>gi|152993869|ref|YP_001359590.1| DNA repair protein RadC [Sulfurovum sp. NBC37-1]
gi|151425730|dbj|BAF73233.1| DNA repair protein RadC [Sulfurovum sp. NBC37-1]
Length = 219
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 7/125 (5%)
Query: 21 HHN-RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
H + R++ KG AL E+L ++L I KD + ++K ++ F L
Sbjct: 8 HRQDKPREKLAGKGAKALKNDELLSVLLGSGIQGKDVRKLSKEIISLFDD--DFENLSLD 65
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
+I+ +G A ++ S+R L K + ++ + K +F
Sbjct: 66 KFCDIHGLGMAKASQILAAVELSKRYL---IRSNKRICSAGDVYDELK-QFSTKTQEHFL 121
Query: 140 YCFSI 144
Sbjct: 122 TITLD 126
>gi|325970526|ref|YP_004246717.1| DNA repair protein RadC [Spirochaeta sp. Buddy]
gi|324025764|gb|ADY12523.1| DNA repair protein RadC [Spirochaeta sp. Buddy]
Length = 227
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R+R L++G AL+ E+L +++ + +IAK LL+ V L
Sbjct: 20 DRPRERMLERGAEALSDQELLAILIGSGNKERSVNAIAKDLLELLDKKAVV---SNDELM 76
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G A + +R L ++ ++ ++ HY + +F
Sbjct: 77 NIPGLGTAKATLIGSALELGRRRL---PPKRRQISTPSEIYPLIQ-HYASRMQEHFLSIC 132
Query: 143 SI 144
Sbjct: 133 LN 134
>gi|330837363|ref|YP_004412004.1| DNA repair protein RadC [Spirochaeta coccoides DSM 17374]
gi|329749266|gb|AEC02622.1| DNA repair protein RadC [Spirochaeta coccoides DSM 17374]
Length = 228
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 7/138 (5%)
Query: 7 SKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR 66
S + + + +R R++ + +G +L+ E++ ++L ++ ++A LL
Sbjct: 5 SNHADSSTIIKEMPVEDRPREKMMTRGATSLSDRELVMILLGSGSRKRPVCTLANDLL-- 62
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
L + L I +G+ A + + + + F+ +
Sbjct: 63 -EILDRTDNPSMETLLTIKGMGQAKAAVICAAWELGR---RKPPKRRIFIQSPPDVYPLI 118
Query: 127 ERHYPMKNANNFAYCFSI 144
HY + +F
Sbjct: 119 R-HYADRTREHFICVALN 135
>gi|296392681|ref|YP_003657565.1| DNA repair protein RadC [Segniliparus rotundus DSM 44985]
gi|296179828|gb|ADG96734.1| DNA repair protein RadC [Segniliparus rotundus DSM 44985]
Length = 216
Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 39/120 (32%), Gaps = 2/120 (1%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
H+R R+R L++G AL+ E++ + L R +A LL + + G+ A L
Sbjct: 7 HDRPRERLLRQGAAALSEAELVAIHLGSGHARASALDVAHVLLTSWGGVHGLARARPEEL 66
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G A L + R+ L R A
Sbjct: 67 ARTPGVGPAKAARLAAAFAIAGRVDA--PDEPVQLVQSSDIARVASRVLGASRTEQVAVL 124
>gi|303327272|ref|ZP_07357714.1| DNA repair protein RadC [Desulfovibrio sp. 3_1_syn3]
gi|302863260|gb|EFL86192.1| DNA repair protein RadC [Desulfovibrio sp. 3_1_syn3]
Length = 230
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 43/109 (39%)
Query: 36 ALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALEL 95
A+A YE+LEL+L + RKDTK +AK LL+RF ++ G A L ++ G +
Sbjct: 29 AVADYEVLELLLGYGLTRKDTKPLAKELLRRFGSIRGALDARPDELLQVPGFGPGLMALW 88
Query: 96 KLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+++ R + ++ + +
Sbjct: 89 RVLREVLARHATSAVRKREIMATPDAVARMAQSRLAGCPHEECWLALVD 137
>gi|329911397|ref|ZP_08275501.1| DNA repair protein RadC [Oxalobacteraceae bacterium IMCC9480]
gi|327545922|gb|EGF31022.1| DNA repair protein RadC [Oxalobacteraceae bacterium IMCC9480]
Length = 181
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 34/88 (38%)
Query: 57 KSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFL 116
+A+ ++ F ++ G+F A + ++ +G +L+ V ++R + +
Sbjct: 1 MDLAREMVSHFGSINGLFAASVVQFSALHGLGPAKFAQLQAVMELARRAMAEQLKTGVAM 60
Query: 117 TPGQPCLISVERHYPMKNANNFAYCFSI 144
+ Q ++ K +F F
Sbjct: 61 SSPQVVKQYLQLALAHKKYESFTVLFVD 88
>gi|317051923|ref|YP_004113039.1| DNA repair protein RadC [Desulfurispirillum indicum S5]
gi|316947007|gb|ADU66483.1| DNA repair protein RadC [Desulfurispirillum indicum S5]
Length = 216
Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 6/122 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ L +G +L +E++ ++L D +++ + + G
Sbjct: 8 DRPREKLLARGARSLDTHELVAILLGSGTREMDVMKLSRLVARAMEKNGMTVSQD--DFL 65
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
IN IG+ A +L +R+ A + + + + + K F
Sbjct: 66 AINGIGQAKACQLLAAIEMGRRLYSAT---GATVRSYRDVIHLL-EEFRHKKQEYFLSIT 121
Query: 143 SI 144
Sbjct: 122 LD 123
>gi|125975527|ref|YP_001039437.1| DNA repair protein RadC [Clostridium thermocellum ATCC 27405]
gi|125715752|gb|ABN54244.1| DNA repair protein RadC [Clostridium thermocellum ATCC 27405]
Length = 221
Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ L++G L+ E+L +++ ++A +LK G +LQ
Sbjct: 11 ERPREKLLERGVGYLSDLELLAVLIGNGTKDCSVMNVAGKVLKLLD--KGCDRVSARVLQ 68
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
EI +G + + ++R ++ +T L + + + +F C
Sbjct: 69 EIEGVGPAKSAVIAAALEFARRRIR---PEGIKITSACDILP-LISYLANRKQEHF-VCV 123
Query: 143 SIN 145
S+N
Sbjct: 124 SLN 126
>gi|282857436|ref|ZP_06266669.1| DNA repair protein RadC [Pyramidobacter piscolens W5455]
gi|282584721|gb|EFB90056.1| DNA repair protein RadC [Pyramidobacter piscolens W5455]
Length = 239
Score = 80.8 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 11/129 (8%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R + +G AL E+L ++ + +++ LL ++ +L + A L
Sbjct: 9 ERPRERLVTRGPEALKTEELLAILFGTGREGCNVIEMSRELLNKYGSLKNLSRAHALELA 68
Query: 83 -------EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNA 135
+ IG A+ L +R + L
Sbjct: 69 GRNRPYDGVKGIGLAKAVTLLAALELGRRATGEEERR----DSLKSRLDFWTMQLSADER 124
Query: 136 NNFAYCFSI 144
+
Sbjct: 125 EFIIAIYLD 133
>gi|323464260|gb|ADX76413.1| truncated DNA repair protein RadC [Staphylococcus pseudintermedius
ED99]
Length = 141
Score = 80.8 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+ ++R +Q G AL+ E+L +I+ + + +A +L + +L + L L+
Sbjct: 11 EKPKERLIQFGSQALSNTELLAIIINTGSKGRSSIQVASHILAQCQSLTALRKMSLVELE 70
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAY 140
+ IG+ A L V S+R+ + + + F
Sbjct: 71 KFVGIGRNKATTLLAVFELSRRLAEDKKQYLSAPIHSPSQIAERYYAKFSD----KFMV 125
>gi|289547849|ref|YP_003472837.1| DNA repair protein RadC [Thermocrinis albus DSM 14484]
gi|289181466|gb|ADC88710.1| DNA repair protein RadC [Thermocrinis albus DSM 14484]
Length = 224
Score = 80.8 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ- 82
+ R++ ++KG ++L+ E++ ++L +D ++A+ ++ + + L
Sbjct: 15 KPREKMIKKGPSSLSEEELVAIVLGSGTKEEDVLTLAEKVVSI--GWDRIREMKVEDLTN 72
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+ +G A ++K V S RI + ++ + V+ + + +
Sbjct: 73 AVKGLGVAKACQIKAVVELSSRIN--DPYSHIRISSPEDVYQFVKDKVDDR-REHLVAVY 129
Query: 143 S 143
Sbjct: 130 L 130
>gi|254419921|ref|ZP_05033645.1| DNA repair protein RadC [Brevundimonas sp. BAL3]
gi|196186098|gb|EDX81074.1| DNA repair protein RadC [Brevundimonas sp. BAL3]
Length = 228
Score = 80.8 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 2/116 (1%)
Query: 29 FLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIG 88
+L +L L+L R D +A ALL RF +LG V A L +
Sbjct: 22 LSASDVESLDDQALLGLVLRR--SGGDPHRLAGALLARFGSLGAVAAADQTELTRVGGPD 79
Query: 89 KRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
EL++ + R+ + + S + +T + V + F +
Sbjct: 80 ATGLAELRVAREFAVRLARIDASRRSAITSWSALIAYVRAAIAHRPREQFRVLYLD 135
>gi|168334673|ref|ZP_02692813.1| DNA repair protein RadC [Epulopiscium sp. 'N.t. morphotype B']
Length = 225
Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 3/123 (2%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL---GGVFGAPLHLL 81
+R ++ G L+ +++ ++L I + + +AK LL + L
Sbjct: 3 PHERLVEDGACELSDIDLMTILLHNGIADQSVRDLAKLLLTDKHGEIQLKTLKDLKYDTL 62
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ I IGK A++L + ++R+ L + + K F
Sbjct: 63 KSIKGIGKMKAIQLVAIVEIAKRLHVPKPMQLIDLKNPEDVAGLFVEEFENKFQEMFYAL 122
Query: 142 FSI 144
+
Sbjct: 123 YLD 125
>gi|306825148|ref|ZP_07458490.1| DNA repair protein RadC [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432584|gb|EFM35558.1| DNA repair protein RadC [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 197
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 41/103 (39%)
Query: 42 ILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVA 101
+L ++L + + IA+ +L +L + L LQ ++ IG+ A+EL+ V
Sbjct: 1 MLAILLRTGTRQANVFEIAQQVLDSLTSLTDLKKMTLQELQSLSGIGRIKAIELQAVIEL 60
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
RI K + + Q +++ K + +
Sbjct: 61 GHRIHKRETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLN 103
>gi|227554373|ref|ZP_03984420.1| DNA repair protein RadC [Enterococcus faecalis HH22]
gi|227176492|gb|EEI57464.1| DNA repair protein RadC [Enterococcus faecalis HH22]
Length = 198
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 40/102 (39%)
Query: 43 LELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVAS 102
+ ++L D ++A LLK+F L + A L+ L I IG+ A+EL+
Sbjct: 1 MAILLRTGSKEADVMTVAATLLKQFKQLSYLQQATLNELMAIKGIGQVKAIELRAAIELG 60
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
RI +++ +T Q + + + +
Sbjct: 61 CRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 102
>gi|53729298|ref|ZP_00348373.1| COG2003: DNA repair proteins [Pasteuria nishizawae str. North
American]
Length = 110
Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 42/100 (42%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
++ R R+R + +G + E+L ++L +A+ LL L G+
Sbjct: 9 HLPSEERPRERMIAQGPQHVTNAELLAILLRTGCLGISALGLAQQLLVDKGGLLGIARCG 68
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLT 117
++N IG+ AL+L +R+ ++ + L+
Sbjct: 69 WEDFVKMNGIGRAKALQLVAACELGKRVARSLPEQQSSLS 108
>gi|288574635|ref|ZP_06392992.1| DNA repair protein RadC [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570376|gb|EFC91933.1| DNA repair protein RadC [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 214
Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 42/119 (35%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R+R + G AL E+L ++L +D +++++L F LGG+ A +
Sbjct: 7 PRERLFRNGATALNDVELLAILLRTGGGGEDVLGLSESILDGFGGLGGLTRASVKEYLSF 66
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
IG A L +R+ N + L ++ + F
Sbjct: 67 KGIGGAKAASLAAAVEIGRRLAIYNGRDPSRPLSWRDELKDIQVRLSDEPREFIVAIFL 125
>gi|24214156|ref|NP_711637.1| DNA repair protein RadC [Leptospira interrogans serovar Lai str.
56601]
gi|45658145|ref|YP_002231.1| DNA repair protein [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|24195053|gb|AAN48655.1| DNA repair protein RadC [Leptospira interrogans serovar Lai str.
56601]
gi|45601387|gb|AAS70868.1| DNA repair protein [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
Length = 232
Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 3/117 (2%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R R + +L +E+L ++L R + + +++ +L R GG+ + L++I
Sbjct: 17 PRTR-IAYEAESLEDWELLAVLLGRGNRAQPIEELSREILHRSKGFGGLLQKQVSDLRKI 75
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G A L ++R+ K++ + L + KN F
Sbjct: 76 PGVGIAKATTLLAAIEIARRLKWEALKGKRY--SSEQLLNFLATSLIPKNRECFVLI 130
>gi|296115177|ref|ZP_06833818.1| DNA repair protein RadC [Gluconacetobacter hansenii ATCC 23769]
gi|295978278|gb|EFG85015.1| DNA repair protein RadC [Gluconacetobacter hansenii ATCC 23769]
Length = 266
Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Query: 21 HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHL 80
H R+R R G +LA YEILE++LF +PR+DTK +AK L+ RF +L V A
Sbjct: 45 HRARMRARIRTAGGMSLADYEILEVLLFAGVPRRDTKPMAKDLIARFGSLCAVLAAGPDE 104
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV---ERHYPMKN--- 134
L+ +G R L L ++ ++R+ + + + ++
Sbjct: 105 LRAA-GVGPRACSVLGLPALVARRLCRGDARPQPYIHDLHAAWTHYATTRAAMAGVPAPG 163
Query: 135 -ANNFAYCFSI 144
Sbjct: 164 GRGQVTILLLD 174
>gi|219850975|ref|YP_002465407.1| DNA repair protein RadC [Methanosphaerula palustris E1-9c]
gi|219545234|gb|ACL15684.1| DNA repair protein RadC [Methanosphaerula palustris E1-9c]
Length = 225
Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 6/116 (5%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R++ ++G + L E++ I+ + + S+A + L
Sbjct: 17 ERPREKIQKRGASVLTDRELIAAIIGKGVHGHSVLSVA--TVVEEQLNRDYPELNYSTLA 74
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+I IG A +L ++R ++ + + L + + +F
Sbjct: 75 KIPGIGHVKACQLLACFELARRYIEEEPVR---IQRPEDVLPLL-PDLREEKQEHF 126
>gi|221135334|ref|ZP_03561637.1| DNA repair protein RadC [Glaciecola sp. HTCC2999]
Length = 213
Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 40/115 (34%)
Query: 31 QKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKR 90
+ + + ++L +IL + ++++++A+ LL +L GV A + +I +G +
Sbjct: 6 RGHISQWSDSQLLGVILQQRHSSENSQALAETLLTELGSLHGVLNASQNAFCDIPGVGPQ 65
Query: 91 VALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ V +R + L FA N
Sbjct: 66 KYKRCQAVVELHKRTGAQHVERMMKLDSVDESKAFFISQLQYYPQERFAVALLNN 120
>gi|268610724|ref|ZP_06144451.1| DNA repair protein RadC [Ruminococcus flavefaciens FD-1]
Length = 229
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 18 YIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP 77
+ GH R++ RFL + +E+ EL LF P +T + A ALL++ T+ GV +
Sbjct: 7 HSGHRQRMKQRFLNYPPEFMYDHELFELALFYSRPVVNTNNCAHALLEKCGTVSGVLTSD 66
Query: 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L++ +G A+ LK++S R L A L ++ ++
Sbjct: 67 ISELEKTEGVGHGSAVFLKVLSEGVMRFL-ARGCEDMVLDTCDSIRSFFTEYFSGSDSE 124
>gi|254418550|ref|ZP_05032274.1| DNA repair protein RadC [Brevundimonas sp. BAL3]
gi|196184727|gb|EDX79703.1| DNA repair protein RadC [Brevundimonas sp. BAL3]
Length = 205
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 2/111 (1%)
Query: 35 NALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALE 94
L +L L+L D +A LL F +LG V A L L G V E
Sbjct: 5 ETLDDRALLSLML--GRSADDPDRLACNLLTHFGSLGAVLAADLSELIRTVHAGPAVFGE 62
Query: 95 LKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
LK++ + R+ + + + L V F + +
Sbjct: 63 LKILRELAVRLARIEAGRRPAIASWTALLAYVRTAMAHLPREQFRVLYLDH 113
>gi|15893200|ref|NP_360914.1| putative DNA repair protein (RadC) [Rickettsia conorii str.
Malish 7]
gi|15620415|gb|AAL03815.1| DNA repair protein (RadC)-like protein [Rickettsia conorii str.
Malish 7]
Length = 103
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
YIGH R+++RF+ G + YE+LE++LF IPRKD K +AK LL F +
Sbjct: 16 DTPHYIGHRKRVKERFVAAGAEYFSDYELLEVMLFSAIPRKDIKPLAKKLLDHFDIT-DL 74
Query: 74 FGAPLHLLQEINRIGKRVALEL 95
L I + + +
Sbjct: 75 INLDKERLLSIKGTNENLYINF 96
>gi|158522103|ref|YP_001529973.1| DNA repair protein RadC [Desulfococcus oleovorans Hxd3]
gi|158510929|gb|ABW67896.1| DNA repair protein RadC [Desulfococcus oleovorans Hxd3]
Length = 223
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
L + +R R++ L++G L+ E+L ++L + + D ++++ ++K G
Sbjct: 6 KKLKDLPPADRPREKLLKQGAAFLSDQELLAILLSKGTAKDDVFALSRKIIKIIDEKGAA 65
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
A + ++ IG A + +R +K + L + HY +
Sbjct: 66 LTA--QDIMAVDGIGMAKAAAICAAFEFVRRRVK---PQGLKIKFPADVLP-LIHHYADR 119
Query: 134 NANNFAY 140
+F
Sbjct: 120 KQEHFLC 126
>gi|116328705|ref|YP_798425.1| DNA repair protein [Leptospira borgpetersenii serovar Hardjo-bovis
L550]
gi|116330637|ref|YP_800355.1| DNA repair protein [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
gi|116121449|gb|ABJ79492.1| DNA repair protein [Leptospira borgpetersenii serovar Hardjo-bovis
L550]
gi|116124326|gb|ABJ75597.1| DNA repair protein [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
Length = 232
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 3/117 (2%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R R + +L +E+L ++L R + + +++ +L + GG+ + L++I
Sbjct: 17 PRTR-IAYEAESLEDWELLAVLLGRGNRAQPIEELSREILHQSKGFGGLLQKQVSDLRKI 75
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G A L ++R+ +++ + L + KN F
Sbjct: 76 PGVGIAKATTLLAAVEFARRLKWEALKGRRY--SSEQLLNFLATSLIPKNRECFVLI 130
>gi|34581129|ref|ZP_00142609.1| hypothetical DNA repair protein (RadC) [Rickettsia sibirica 246]
gi|28262514|gb|EAA26018.1| hypothetical DNA repair protein (RadC) [Rickettsia sibirica 246]
Length = 103
Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
YIGH R+++RF+ G + YE+LE++LF IP KD K +AK LL F +
Sbjct: 16 DTPHYIGHRKRVKERFVAAGAEHFSDYELLEVMLFSAIPHKDIKPLAKKLLDHFDIT-DL 74
Query: 74 FGAPLHLLQEINRIGKRVALEL 95
L I + + +
Sbjct: 75 INLDKERLLSIKGTNENLYINF 96
>gi|108763923|ref|YP_630190.1| DNA repair protein RadC [Myxococcus xanthus DK 1622]
gi|108467803|gb|ABF92988.1| DNA repair protein RadC [Myxococcus xanthus DK 1622]
Length = 241
Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 3/124 (2%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
R+R + G AL E+L ++ ++A ALL L G+ L
Sbjct: 13 RERLFRLGAAALTDPELLCVVWSSGPRAPGAWAVAGALLSEGGGLKGLVQQEPLALSLRP 72
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI- 144
+G A + +R +A + T + + F
Sbjct: 73 GVGPVRAAQALAALELGRRSQRARERRPRLRT-PKEIAAYLAPVLGALRREVFHVLCFNA 131
Query: 145 -NII 147
N++
Sbjct: 132 RNVL 135
>gi|213019297|ref|ZP_03335104.1| DNA repair protein RadC [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|212995406|gb|EEB56047.1| DNA repair protein RadC [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 102
Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 41/93 (44%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR+R + +L YEILE IL+ R D K +AK+L++ +L VF A L
Sbjct: 7 GHRKRLRERIILDNGQSLLDYEILEHILYSAYSRIDVKPVAKSLIENLGSLNKVFNADLE 66
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSI 112
LQ I + + V L
Sbjct: 67 ALQNIEGVNNAAISAIFCVKQGVLNKLCQTEKK 99
>gi|219872082|ref|YP_002476457.1| DNA repair protein RadC [Haemophilus parasuis SH0165]
gi|219692286|gb|ACL33509.1| DNA repair protein RadC [Haemophilus parasuis SH0165]
Length = 197
Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 35/89 (39%)
Query: 57 KSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFL 116
+++++L F +L G+ A L +I +G+ ++L+ ++R L + + +
Sbjct: 1 MDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQLQATKEMTKRYLSQQMKVNEMV 60
Query: 117 TPGQPCLISVERHYPMKNANNFAYCFSIN 145
++ + F F N
Sbjct: 61 DSPYLAVMYFQSELESWEREVFMVIFLDN 89
>gi|67459702|ref|YP_247326.1| DNA repair protein RadC [Rickettsia felis URRWXCal2]
gi|67005235|gb|AAY62161.1| DNA repair protein RadC [Rickettsia felis URRWXCal2]
Length = 155
Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 46 ILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRI 105
+LF IPRKD K +AK LL F + L I + + + L+ R+
Sbjct: 1 MLFSAIPRKDVKPLAKKLLDHFDIT-DLINLDKERLLSIKGTNENLYINFALIRELINRV 59
Query: 106 LKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI--NII 147
LK K + + ++ + F F NI+
Sbjct: 60 LKQKIINKNIIASWSSLIDYLKVNMGNMRLEQFRILFLNKKNIL 103
>gi|190570883|ref|YP_001975241.1| Putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190571715|ref|YP_001976073.1| Putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019311|ref|ZP_03335118.1| putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|213019396|ref|ZP_03335202.1| putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357155|emb|CAQ54567.1| Putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190357987|emb|CAQ55450.1| Putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994818|gb|EEB55460.1| putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|212995420|gb|EEB56061.1| putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 222
Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Query: 27 DRFLQ-KGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
+R LQ G +AL EI+ ++L + RK + + K L+ +G + G + L+ I
Sbjct: 12 ERVLQSGGGSALFDREIVSVLLGAVHDRKQAQDVTKTLMDNCPGIGEILGREIDDLKMIE 71
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + A ++ V A +R L+ + + + V + +
Sbjct: 72 GMTEHAAAAIECVKEAYKRALREGLKRGPVMDSQEKLIEYVRVNIGFSAKEAVLIIYLD 130
>gi|312880415|ref|ZP_07740215.1| DNA repair protein RadC [Aminomonas paucivorans DSM 12260]
gi|310783706|gb|EFQ24104.1| DNA repair protein RadC [Aminomonas paucivorans DSM 12260]
Length = 222
Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R+R L +G + L+ E+L ++L +D ALL+ + L G+ P L
Sbjct: 10 DRPRERLLAEGASNLSAPELLAVLLRTGTRDRDALQTGAALLETYGGLRGLARIPAGELT 69
Query: 83 EINRIGKRVALELKLVSVAS 102
+ +G A L
Sbjct: 70 GFSGLGPAKAAVLCAALELG 89
>gi|88603975|ref|YP_504153.1| DNA repair protein RadC [Methanospirillum hungatei JF-1]
gi|121721483|sp|Q2FT43|Y2739_METHJ RecName: Full=UPF0758 protein Mhun_2739
gi|88189437|gb|ABD42434.1| DNA replication and repair protein RadC [Methanospirillum hungatei
JF-1]
Length = 225
Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 8/121 (6%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL--LKRFATLGGVFGAPLHL 80
+R R++ +KG +AL E++ IL + D +I+ + L + L
Sbjct: 13 DRPREKIEKKGASALKDSELIAAILGKGTKNNDILTISSQVADLLKKDNLP-----SYDT 67
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVE-RHYPMKNANNFA 139
L IN IG A L + R + +T L E K+ +F
Sbjct: 68 LLRINGIGPTKAAVLMACFELANRYGTPAEKERIRITEPDHILKISEVTDLSGKSQEHFL 127
Query: 140 Y 140
Sbjct: 128 V 128
>gi|304414796|ref|ZP_07395755.1| DNA repair protein RadC [Candidatus Regiella insecticola LSR1]
gi|304283148|gb|EFL91561.1| DNA repair protein RadC [Candidatus Regiella insecticola LSR1]
Length = 181
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 31/89 (34%)
Query: 57 KSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFL 116
+A L+ F +L + A L +G+ +++ +S + R ++ + + L
Sbjct: 1 MEMAGNLIAEFGSLHNLMSADYPTLCAQKGLGESKYTQIQAISELASRCSFSHLAKEGAL 60
Query: 117 TPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + F F N
Sbjct: 61 CNPKITREFIYNILSHREREVFLVLFLDN 89
>gi|226227362|ref|YP_002761468.1| DNA repair protein RadC [Gemmatimonas aurantiaca T-27]
gi|226090553|dbj|BAH38998.1| DNA repair protein RadC [Gemmatimonas aurantiaca T-27]
Length = 244
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 1/123 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFAT-LGGVFGAPLHLL 81
R R+R G AL+ E++ +L + A+ + ++ LG + PL L
Sbjct: 29 ERPRERLRALGSQALSTTELIATLLGSGQQGTSAVACAQVVFEQCGGSLGRLAAMPLAAL 88
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
I +G A + +R+ L + + F
Sbjct: 89 TRIRGVGVARAAAVHAALELGRRMAGEAREAGLPLRGPRDVAAAFAPRLQDAPVEEFHVA 148
Query: 142 FSI 144
Sbjct: 149 ILD 151
>gi|270158831|ref|ZP_06187488.1| DNA repair protein RadC [Legionella longbeachae D-4968]
gi|289166376|ref|YP_003456514.1| DNA repair protein RadC (start is missing) [Legionella longbeachae
NSW150]
gi|269990856|gb|EEZ97110.1| DNA repair protein RadC [Legionella longbeachae D-4968]
gi|288859549|emb|CBJ13514.1| DNA repair protein RadC (start is missing) [Legionella longbeachae
NSW150]
Length = 191
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 31/89 (34%)
Query: 57 KSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFL 116
+A LL L + A +++ +G+ ++L+ V +R + +
Sbjct: 1 MQLACDLLAHLGDLRAILNADTQSFKQVKGLGEAQYVQLQAVKEICRRSDFIQIQKENQI 60
Query: 117 TPGQPCLISVERHYPMKNANNFAYCFSIN 145
T + + +++ F F N
Sbjct: 61 TNSKQTYVYLKKRLRDYKNETFVALFLDN 89
>gi|169335849|ref|ZP_02863042.1| hypothetical protein ANASTE_02275 [Anaerofustis stercorihominis DSM
17244]
gi|169258587|gb|EDS72553.1| hypothetical protein ANASTE_02275 [Anaerofustis stercorihominis DSM
17244]
Length = 224
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 39/120 (32%), Gaps = 3/120 (2%)
Query: 27 DRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAPLHLLQE-I 84
+R +G L E++ LI+ + K ++ +++R+ +L + G L+
Sbjct: 13 ERLYDEGVGELTDSELVALIIRKGDSTKSVLELSNNIIRRYGASLRDLIGITREELKNDN 72
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + +R +K +T + + + +F
Sbjct: 73 PGMTDLKCDMILASLEIGRR-AYLKKEKQKIITCVMDIVDLLSYDMSFLDEEHFKVILLN 131
>gi|220916229|ref|YP_002491533.1| DNA repair protein RadC [Anaeromyxobacter dehalogenans 2CP-1]
gi|219954083|gb|ACL64467.1| DNA repair protein RadC [Anaeromyxobacter dehalogenans 2CP-1]
Length = 223
Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 2/118 (1%)
Query: 27 DRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINR 86
+R G AL+ E++ ++L + + A LL L + A L+++
Sbjct: 13 ERLELLGARALSDAELVAVLLGPTAGANNVRDAAIRLLDEKP-LPEIAWASTDDLRQVTG 71
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A L +R + + L + F
Sbjct: 72 IGPARAAALVAAFELGRRGAWSPPKRGERLQDPARVYELLR-DVAHAEREQFHVVLLD 128
>gi|167957187|ref|ZP_02544261.1| DNA repair protein RadC [candidate division TM7 single-cell isolate
TM7c]
Length = 168
Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 5/116 (4%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R++ + G L+ E+L I+ R D IA+ +LK GG L+
Sbjct: 10 DRPREKLARYGTARLSDLELLMAIIGSGNARADVGKIAREVLKIVRQKGG--DISYDDLR 67
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+ +G+ + ++R L S + + + + + K A F
Sbjct: 68 SVVGLGEAKIPVILASLELARRYLLD--SDQPIIDSPEKAVELL-VDIRDKKAGIF 120
>gi|58698716|ref|ZP_00373604.1| DNA repair protein RadC, truncation, putative [Wolbachia
endosymbiont of Drosophila ananassae]
gi|225630177|ref|YP_002726968.1| DNA repair protein RadC, putative [Wolbachia sp. wRi]
gi|58534773|gb|EAL58884.1| DNA repair protein RadC, truncation, putative [Wolbachia
endosymbiont of Drosophila ananassae]
gi|225592158|gb|ACN95177.1| DNA repair protein RadC, putative [Wolbachia sp. wRi]
Length = 157
Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 3/125 (2%)
Query: 23 NRLRD---RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
R ++ R L NAL +EI+E L + R ++IAK L+ +G + G +
Sbjct: 12 KRKKEIEFRILASKGNALLDHEIIETFLSAVHDRAQARAIAKNLVTTCTGIGRILGREID 71
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
L+ + + + V R+ K L + + + N
Sbjct: 72 ELKSVEGVTDSTVSMIFCVKETLTRVFKEGLKKGPILDNLDKLIEYLRVSIGYSDKENIT 131
Query: 140 YCFSI 144
+
Sbjct: 132 IMYLN 136
>gi|260655709|ref|ZP_05861182.1| DNA repair protein RadC [Jonquetella anthropi E3_33 E1]
gi|260629626|gb|EEX47820.1| DNA repair protein RadC [Jonquetella anthropi E3_33 E1]
Length = 229
Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 5/123 (4%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHL-LQ 82
R R+R + G + L+ E+L +++ + +A +LL F L + A +Q
Sbjct: 16 RPRERLCRLGASGLSDVELLAVLIRTGTAAQGVLELAGSLLAEFGGLRAMAQASPSELVQ 75
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
I +G+ A L +R L + F
Sbjct: 76 SIGGMGEAKAAALLAAFELGRRSSNEQ-EGLPPLKAW--LADWAC-QLRPEAREFVVAGF 131
Query: 143 SIN 145
+
Sbjct: 132 FDD 134
>gi|153006772|ref|YP_001381097.1| DNA repair protein RadC [Anaeromyxobacter sp. Fw109-5]
gi|152030345|gb|ABS28113.1| DNA repair protein RadC [Anaeromyxobacter sp. Fw109-5]
Length = 222
Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 2/118 (1%)
Query: 27 DRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINR 86
+R Q G AL+ E+L ++L + + A+ LL L + AP LQ+
Sbjct: 11 ERMQQVGLRALSDAELLAILLGPTAGVRSIRDAAQRLLDALP-LSQIAWAPPEELQQQPG 69
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A + +R + + + + F
Sbjct: 70 IGPARAAAIAAAFELGRRGGWSPPKRGERILDPARVFELMRP-LAHAEREEFHTVLLD 126
>gi|149924122|ref|ZP_01912501.1| DNA repair protein RadC [Plesiocystis pacifica SIR-1]
gi|149815019|gb|EDM74577.1| DNA repair protein RadC [Plesiocystis pacifica SIR-1]
Length = 260
Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 5/141 (3%)
Query: 4 FRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKAL 63
+ P + S R R+R L G +L+ E+L L+ + A+A+
Sbjct: 16 PSPTSLPPRRSPPKRKA-QERPRERLLLFGPKSLSETELLALL----LGGGRAVQRAQAV 70
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
L L G+ A H L+E+ IG A L +R+ + + +++ L +
Sbjct: 71 LDAVGGLNGLSRACAHELREVIGIGDAGATALAAAVELHRRLDRLDLPMRRPLRHPREAE 130
Query: 124 ISVERHYPMKNANNFAYCFSI 144
+ +F
Sbjct: 131 RFLRSLLGDAEREHFMIIGLD 151
>gi|213019779|ref|ZP_03335582.1| putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|212994609|gb|EEB55254.1| putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 221
Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 1/123 (0%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R L+ AL E++E L + R++ ++IA+ L+ F +GGV G + L
Sbjct: 8 REEIEFRALESNGKALLDREVIETFLSAVHDREEARTIARKLIDSFG-IGGVLGQEIDDL 66
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ I I + + A++R+ + + + + +
Sbjct: 67 KTIEGITDSTVAVILCLKEAAKRVPREELKKGPVMDNLETIVKYLRVSIGYSEEEKMKII 126
Query: 142 FSI 144
+
Sbjct: 127 YFD 129
>gi|157829112|ref|YP_001495354.1| hypothetical protein A1G_07025 [Rickettsia rickettsii str.
'Sheila Smith']
gi|165933836|ref|YP_001650625.1| DNA repair protein [Rickettsia rickettsii str. Iowa]
gi|157801593|gb|ABV76846.1| hypothetical protein A1G_07025 [Rickettsia rickettsii str.
'Sheila Smith']
gi|165908923|gb|ABY73219.1| DNA repair protein [Rickettsia rickettsii str. Iowa]
Length = 103
Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
YIGH R+++RF+ + YE+LE++LF IPRKD K +AK LL F +
Sbjct: 16 DTPHYIGHRKRVKERFVAAEAEHFSDYELLEVMLFSAIPRKDIKPLAKKLLDHFDIT-DL 74
Query: 74 FGAPLHLLQEINRIGKRVALEL 95
L I + + +
Sbjct: 75 INLDKERLLSIKGTNENLYINF 96
>gi|325677919|ref|ZP_08157561.1| DNA repair protein RadC [Ruminococcus albus 8]
gi|324110473|gb|EGC04647.1| DNA repair protein RadC [Ruminococcus albus 8]
Length = 229
Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 18 YIGHHNRLRDRFL-QKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ GH R+R R Q A +E+LE++LF ++PR +T IA LLK+F + V A
Sbjct: 7 HSGHRERMRARLRTQNDLEGFAEHEVLEMLLFGILPRVNTNEIAHRLLKKFGNIRTVLTA 66
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
P+ L ++ +G + A +L + +R + ++ + + + +
Sbjct: 67 PVTDLCQVQGVGVKCAEQLNFLGQVFRRAERESFLTVQA-DDYNELCVYLRNFFYGDRTE 125
Query: 137 NF 138
Sbjct: 126 RL 127
>gi|261416893|ref|YP_003250576.1| DNA repair protein RadC [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373349|gb|ACX76094.1| DNA repair protein RadC [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 233
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 7/121 (5%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ G ++L+ E+L LIL +A+ L + +T V L L+ I
Sbjct: 18 PREKLEFSGVSSLSNEELLALILGSGSHECSVFELARRLSEFLSTETSVP--TLARLKSI 75
Query: 85 NRIGKRVALELKLVSV-ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+GK A ++ + + IL + L V + ++ +
Sbjct: 76 RGLGKVKAAQILACLELSGRFILSDKAIPVAV---PEDVLSRV-AYMKYESQEHLVVISL 131
Query: 144 I 144
Sbjct: 132 N 132
>gi|312885756|ref|ZP_07745389.1| DNA repair protein [Mucilaginibacter paludis DSM 18603]
gi|311301744|gb|EFQ78780.1| DNA repair protein [Mucilaginibacter paludis DSM 18603]
Length = 192
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA-KALLKRFATLGGVFGAPLHLLQ 82
R R++ L++G A++ E+L +++ P +A + LL L + L
Sbjct: 95 RPREKMLEQGRQAMSDAELLAMLIGSGYPGVTAVDLAGQILLSLDHDLNRLADLSTEELT 154
Query: 83 EINRIGKRVALELKLVSVASQRILKANW 110
IG A+ ++ + R+ A
Sbjct: 155 VFQGIGLAKAMSIQSAMELAVRVAAAKP 182
>gi|58040815|ref|YP_192779.1| DNA repair protein RadC [Gluconobacter oxydans 621H]
gi|58003229|gb|AAW62123.1| DNA repair protein RadC [Gluconobacter oxydans 621H]
Length = 216
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 3/118 (2%)
Query: 29 FLQKGENALAYYEILELI--LFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINR 86
L L +L L+ LF + +++ L RF +L V A L+ I+
Sbjct: 7 LLTGRGRHLDDATLLHLLTVLFTG-RETGSVALSHNLFARFGSLAAVLSATDRELESISD 65
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G + ++++ A+ R +A + L Q L + +N F F
Sbjct: 66 MGMHMLPMIRVLQEAALRYNRARLPPEDVLDNEQKLLDYLTARLARENIEQFRILFLN 123
>gi|302327620|gb|ADL26821.1| DNA repair protein RadC [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 228
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 7/121 (5%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
R++ G ++L+ E+L LIL +A+ L + +T V L L+ I
Sbjct: 13 PREKLEFSGVSSLSNEELLALILGSGSHECSVFELARRLSEFLSTETSVP--TLARLKSI 70
Query: 85 NRIGKRVALELKLVSV-ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+GK A ++ + + IL + L V + ++ +
Sbjct: 71 RGLGKVKAAQILACLELSGRFILSDKAIPVAV---PEDVLSRV-AYMKYESQEHLVVISL 126
Query: 144 I 144
Sbjct: 127 N 127
>gi|222825167|dbj|BAH22324.1| DNA repair protein RadC [Wolbachia endosymbiont of Cadra cautella]
Length = 219
Score = 71.5 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+L R L +L +E+LE L + +AK L++ F++LG V A LH L
Sbjct: 7 KEKLETRILSSRGRSLLDHELLERNLSAYTEGR---EVAKKLMELFSSLGRVINADLHEL 63
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + + + + RILK L + L + +
Sbjct: 64 KNVTGMNDGAIANIFCLKEIFDRILKGKLKKLSILDNREELLKYFKAAIGQSRKESLRVV 123
Query: 142 FSI 144
+
Sbjct: 124 YLD 126
>gi|321272297|gb|ADW80182.1| putative DNA repair protein RadC [Wolbachia endosymbiont wVitA of
Nasonia vitripennis phage WOVitA1]
gi|321272349|gb|ADW80230.1| putative DNA repair protein RadC [Wolbachia endosymbiont wVitB of
Nasonia vitripennis phage WOVitB]
Length = 221
Score = 71.5 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 1/123 (0%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R L+ AL E++E L + R++ + IA+ L+ F +GGV G + L
Sbjct: 8 REEIEFRALESNGKALLDREVIETFLSAVHDREEARIIARKLIDNFG-IGGVLGQEIDDL 66
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ I I + + A++R+ + + + + +
Sbjct: 67 KTIEGITDSTVAVILCLKEAAKRVPREELKKGPVMDNLETIVKYLRVSIGYSEEEKMKII 126
Query: 142 FSI 144
+
Sbjct: 127 YFD 129
>gi|292670114|ref|ZP_06603540.1| DNA repair protein RadC [Selenomonas noxia ATCC 43541]
gi|292648213|gb|EFF66185.1| DNA repair protein RadC [Selenomonas noxia ATCC 43541]
Length = 121
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA--TLGGVFGAPLHLLQ 82
R+R + +G AL+ E+L ++L ++ +A+ ++ RF LG + P
Sbjct: 12 PRERLIAQGTAALSDAELLAVLLRTGRAGENVLELARGIVARFKETGLGEILRMPCAEFA 71
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
I IG A + +R + + + + +
Sbjct: 72 RIPGIGAAKAATVLAALELGRRAQQGR-QGMPRIRAARDAAELLLPRCRGE 121
>gi|225630427|ref|YP_002727218.1| DNA repair protein RadC [Wolbachia sp. wRi]
gi|225592408|gb|ACN95427.1| DNA repair protein RadC [Wolbachia sp. wRi]
Length = 219
Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 3/123 (2%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+L R L +L +E+LE L + +AK L++ F++LG V A H L
Sbjct: 7 KEKLETRILSSRGRSLLDHELLERTLSECEEGR---EVAKKLIELFSSLGRVINADFHEL 63
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+ + + + + RILK L + L + +
Sbjct: 64 KNVTGMNDGAIASIFCLKEIFDRILKGKLKKLSILDNREELLKYFKTAIGQSRKESLRVI 123
Query: 142 FSI 144
+
Sbjct: 124 YLD 126
>gi|329896524|ref|ZP_08271582.1| DNA repair protein RadC [gamma proteobacterium IMCC3088]
gi|328921741|gb|EGG29114.1| DNA repair protein RadC [gamma proteobacterium IMCC3088]
Length = 210
Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 3/108 (2%)
Query: 37 LAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
L+ E+L + L + A++LL++ L V + L+ + R L+
Sbjct: 13 LSSAELLAIQLGIENEGRYV---AESLLEQCGGLARVLKSDCAWLRRTVGLSPRSIRRLR 69
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+V+ S R K L+ + + +F +
Sbjct: 70 VVAELSSRAAKEALLHVDALSNPTLVREYLSEYLVAAKREHFVCLYLD 117
>gi|225629582|ref|ZP_03787606.1| DNA repair protein RadC [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225591565|gb|EEH12581.1| DNA repair protein RadC [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 93
Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR++ + +L YE+LE IL+ R D K +AK+L++ F +L VF A L
Sbjct: 7 GHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPVAKSLIESFGSLNKVFNADLE 66
Query: 80 LLQEINRIGKRVALELKLVSVASQRIL 106
LQ ++ + + V A R
Sbjct: 67 ALQNVDDVSNAAISAIFCVKQAFVRSA 93
>gi|153006775|ref|YP_001381100.1| DNA repair protein RadC [Anaeromyxobacter sp. Fw109-5]
gi|152030348|gb|ABS28116.1| DNA repair protein RadC [Anaeromyxobacter sp. Fw109-5]
Length = 222
Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 6/140 (4%)
Query: 5 RMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
RM S + + +R R R L G AL+ +++ L+L R ++ L
Sbjct: 6 RMPPIVSDTAAPAH----DRPRARLLSDGPRALSDADLVALLLGAGSSRLSPRAA-ALAL 60
Query: 65 KRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
L + AP + +G A + +R + + +
Sbjct: 61 LEAIPLAELAWAPPDAIASAPGVGIARAAAIAAAFELGRRAAWSPPRRGERCLDPRRVSE 120
Query: 125 SVERHYPMKNANNFAYCFSI 144
+ F
Sbjct: 121 LLRHA-AHAEREGFHVVLLD 139
>gi|114567770|ref|YP_754924.1| DNA repair proteins [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114338705|gb|ABI69553.1| DNA repair proteins [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 206
Score = 70.4 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 4/108 (3%)
Query: 37 LAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
L+ E+L L L + +A L + + + L I +GK+ AL+LK
Sbjct: 10 LSNLELLSLTLR----ERPDSPVASNLNNLMEHPEQLINSTVEELTNIQGVGKKKALQLK 65
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+R+ +A K + V+ + +F
Sbjct: 66 ATVELGRRLYQAPPKGKTIIKGPMDVSDLVQAQMRYLDREHFKAILLN 113
>gi|167621616|ref|YP_001672124.1| DNA repair protein RadC [Caulobacter sp. K31]
gi|167351739|gb|ABZ74465.1| DNA repair protein RadC [Caulobacter sp. K31]
Length = 253
Score = 70.4 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRI 87
R G +L+ E LEL+L R + ++ A ALL RF L V A L L +
Sbjct: 47 RAATGGLASLSDIEALELLLSRSLANG-ARATAVALLARFGCLRRVLTADLAALSTF--V 103
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
RV ++L+L+ A++R+ A + ++ + ++ F F
Sbjct: 104 DTRVGIDLQLIYDAARRLAAAELPGRCVVSSWTALIDYLKLTMAHCEREAFRVLFLD 160
>gi|153006774|ref|YP_001381099.1| DNA repair protein RadC [Anaeromyxobacter sp. Fw109-5]
gi|152030347|gb|ABS28115.1| DNA repair protein RadC [Anaeromyxobacter sp. Fw109-5]
Length = 222
Score = 70.0 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 2/118 (1%)
Query: 27 DRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINR 86
+R Q G ALA E+L ++L T+ A+ LL L + A +++
Sbjct: 11 ERMEQLGVRALADVELLTILLGPTAGVNSTRDAAQRLLDAVP-LSQLAWASADEIRQHPG 69
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG A + +R A + + + F
Sbjct: 70 IGPARAAAIAAAFEIGRRGAWAPPKRGERVLDPARVYELMRP-LAHAEREEFHTVLLD 126
>gi|319654115|ref|ZP_08008205.1| hypothetical protein HMPREF1013_04825 [Bacillus sp. 2_A_57_CT2]
gi|317394200|gb|EFV74948.1| hypothetical protein HMPREF1013_04825 [Bacillus sp. 2_A_57_CT2]
Length = 232
Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 5/126 (3%)
Query: 24 RLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
RL + + G +L E+L LI+ + + +L G +P L +
Sbjct: 22 RLYE--VDGGIKSLNESELLHLIIGAGTKHHPLEEVVNEILSLKYDYGLKGLSPEFLRLK 79
Query: 84 INRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+N + +R A L +R+ + K + + + +F F
Sbjct: 80 VNGLTQRKAEMLLAALELGKRVYTEEPVVGKTIRSPEDAASLLMY-MKHNTQEHFVALFL 138
Query: 144 I--NII 147
N++
Sbjct: 139 NSKNVV 144
>gi|257456116|ref|ZP_05621317.1| DNA repair protein RadC [Treponema vincentii ATCC 35580]
gi|257446502|gb|EEV21544.1| DNA repair protein RadC [Treponema vincentii ATCC 35580]
Length = 222
Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 6/115 (5%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
R+R L+ G L+ ++L ++L I K +A+ +++ T + LQ +N
Sbjct: 14 RERLLKYGAEKLSDVDLLAVLLHTGIANKPVTKLAEEIIRHIDTRK--AESIEAALQTVN 71
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
IG+ + +R + + + + HY ++ F
Sbjct: 72 GIGEAKLSTILAAFELGRRYYG---VGGEKICHPCDIVPFLR-HYSVRKQEQFIC 122
>gi|254777459|ref|ZP_05218975.1| DNA repair protein RadC [Mycobacterium avium subsp. avium ATCC
25291]
Length = 196
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 3/106 (2%)
Query: 35 NALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALE 94
+AL E++ L+L K +A L+ + + + GA L +G A
Sbjct: 2 DALTAGELIALVLRNGTKGKSALELASELIAEYGSAQALAGARPEELAMRPGVGPAKAAA 61
Query: 95 LKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L S+R ++++ S L +
Sbjct: 62 LVAAFQLSRRSVRSDPSQ---LRSAEDVATIARGELAGARRERLIV 104
>gi|124484938|ref|YP_001029554.1| hypothetical protein Mlab_0110 [Methanocorpusculum labreanum Z]
gi|124362479|gb|ABN06287.1| DNA repair protein RadC [Methanocorpusculum labreanum Z]
Length = 247
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
++ R++ + KG +L E++ I+ R +P D I K + K + + ++ L
Sbjct: 38 DKPREKLIAKGPGSLELEELVAAIIGRGVPGCDAVQIGKKVAKIL--MSRTYETEVNDLC 95
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+N +G+ A ++ ++R + + L V Y
Sbjct: 96 GVNGMGEAKACQIIAALELARRFP-PPVHRFAVIHKAEDVLPFVH-QYRYDTQE 147
>gi|99035915|ref|ZP_01314963.1| hypothetical protein Wendoof_01000193 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 218
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 1/117 (0%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRI 87
R L+ AL EI+E L + R + IAK L+ +A +G + G + L+ I +
Sbjct: 11 RILESKGKALLDREIMETFLSAVHERPQAQEIAKNLVHTYAGVGRILGREMDDLKVIEGV 70
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ V +R+L+ + + Q + + +
Sbjct: 71 TDSAVAMIMCVKETLERVLREKLKGEPIMDL-QGLVEYLNVSIGHSERECVKILYLN 126
>gi|239948408|ref|ZP_04700161.1| DNA repair protein [Rickettsia endosymbiont of Ixodes scapularis]
gi|239922684|gb|EER22708.1| DNA repair protein [Rickettsia endosymbiont of Ixodes scapularis]
Length = 95
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 16 LDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
YIGH R+++ F+ G + YE+LE++LF IPRKD K +AK LL F +
Sbjct: 17 PHYIGHRKRVKECFVTAGAEHFSDYELLEVMLFSAIPRKDVKPLAKKLLDHFDITDLM 74
>gi|190570723|ref|YP_001975081.1| Putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019846|ref|ZP_03335648.1| putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190356995|emb|CAQ54384.1| Putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994594|gb|EEB55240.1| putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 218
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 1/117 (0%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRI 87
R L+ AL EI+E L + R + IAK L+ + +G + G + L+ I +
Sbjct: 11 RILESKGKALLDREIMETFLSAVHERPQAQEIAKNLVNSYTGVGRILGREMDDLKVIEGV 70
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ V +R+L+ + + Q + + +
Sbjct: 71 TDSAVAMIMCVKETLERVLREKLKSEPIMDL-QGLVEYLNVSIGHSERECVKILYLN 126
>gi|307354756|ref|YP_003895807.1| DNA repair protein RadC [Methanoplanus petrolearius DSM 11571]
gi|307157989|gb|ADN37369.1| DNA repair protein RadC [Methanoplanus petrolearius DSM 11571]
Length = 219
Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 12/125 (9%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA---KALLKRFATLGGVFGAPLH 79
+R R++ + G L+ E++ I+ R I +D +I+ + LLK +
Sbjct: 11 DRPREKIARLGVENLSNNELIAAIIGRGISGRDVNAISADIEKLLKEKRGRP-----SYN 65
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
EIN IG A ++ ++R + + L + H K F
Sbjct: 66 EFLEINGIGTTKASQMVAAFELARRYSGGS---TYKIEKPGDVLP-LVDHLRSKKQEYFI 121
Query: 140 YCFSI 144
Sbjct: 122 CMTLN 126
>gi|330993526|ref|ZP_08317461.1| UPF0758 protein [Gluconacetobacter sp. SXCC-1]
gi|329759556|gb|EGG76065.1| UPF0758 protein [Gluconacetobacter sp. SXCC-1]
Length = 204
Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 33 GENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVA 92
G +LA YE+LE++LF IPR+DTK AKALL F +L V A L+ +G R
Sbjct: 3 GAQSLADYELLEVLLFAAIPRRDTKPQAKALLAHFGSLEAVLEASPASLRAA-GLGPRGV 61
Query: 93 LELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ ++ + R+ A+ L P ++ + +
Sbjct: 62 AVMACPALVAGRLAHADPRGCVLFADMAALLAYC-DRLPNRDPDGVRVIYLD 112
>gi|213019731|ref|ZP_03335536.1| putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|212994772|gb|EEB55415.1| putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 184
Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 1/117 (0%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRI 87
R L+ AL EI+E L + R + IAK L+ + +G + G + L+ I +
Sbjct: 11 RILESKGKALLDREIMETFLSAVHERPQAQEIAKNLVNSYTGVGRILGREMDDLKVIEGV 70
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ V +R+L+ + + Q + + +
Sbjct: 71 TDSAVAMIMCVKETLERVLREKLKSEPIMDL-QGLVEYLNVSIGHSERECVKILYLN 126
>gi|167893197|ref|ZP_02480599.1| DNA repair protein RadC [Burkholderia pseudomallei 7894]
Length = 172
Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 22/79 (27%)
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF +L + A + + IG L V ++R L + +
Sbjct: 1 RFGSLRALLDAAPDDFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDY 60
Query: 126 VERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 61 LRLLIGTRPREVFVCLFLD 79
>gi|332181204|gb|AEE16892.1| DNA repair protein RadC [Treponema brennaborense DSM 12168]
Length = 221
Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
R++ L+ G E++ L+L I K +AK +L + + L I
Sbjct: 10 REKVLKNGLTFPTDEELIMLLLGSGIQGMPVKQMAKKVLGTVSESH--AETLIQSLLSIT 67
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
IG AL + + + N + K + + ++ HY M+ +F C ++N
Sbjct: 68 GIGPSKALLVGAAIEFGR---RQNAATGKKIQTPADLVPFLQ-HYSMQTKEHF-VCVTLN 122
>gi|42520476|ref|NP_966391.1| DNA repair protein RadC, putative [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58697545|ref|ZP_00372786.1| DNA repair protein RadC, truncation [Wolbachia endosymbiont of
Drosophila simulans]
gi|58698969|ref|ZP_00373824.1| DNA repair protein RadC, putative [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58699197|ref|ZP_00374008.1| DNA repair protein RadC, putative [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225630364|ref|YP_002727155.1| DNA repair protein RadC, putative [Wolbachia sp. wRi]
gi|225630758|ref|YP_002727549.1| DNA repair protein RadC, putative [Wolbachia sp. wRi]
gi|42410215|gb|AAS14325.1| DNA repair protein RadC, putative [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58534284|gb|EAL58472.1| DNA repair protein RadC, putative [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58534509|gb|EAL58653.1| DNA repair protein RadC, putative [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58535974|gb|EAL59696.1| DNA repair protein RadC, truncation [Wolbachia endosymbiont of
Drosophila simulans]
gi|225592345|gb|ACN95364.1| DNA repair protein RadC, putative [Wolbachia sp. wRi]
gi|225592739|gb|ACN95758.1| DNA repair protein RadC, putative [Wolbachia sp. wRi]
Length = 218
Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 1/117 (0%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRI 87
R L+ AL EI+E L + + IAK L+ + +G + G + L+ I +
Sbjct: 11 RILESKGKALLDREIMETFLSAVHESPQAQEIAKNLVNTYTGVGRILGREMDDLKVIEGV 70
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ V +R+LK + + Q + + +
Sbjct: 71 TDSAVAMIMCVKETLERVLKEKLKSEPIMDL-QGIVEYLNVSIGHSERECVKILYLN 126
>gi|282895500|ref|ZP_06303637.1| DNA repair protein radC -like protein [Raphidiopsis brookii D9]
gi|281199533|gb|EFA74396.1| DNA repair protein radC -like protein [Raphidiopsis brookii D9]
Length = 113
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 15 HLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLI-PRK-DTKSIAKALLKRFA---- 68
+ + + R R+R + G LA E++ ++L P K + + +L+
Sbjct: 6 RISDLPENERPRERLITHGAKVLATAELIAILLGTGQGPGKLSAVGLGQHILQELGRDQG 65
Query: 69 -TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRIL 106
L + A L EI+ +G A + +
Sbjct: 66 DPLAALRDATPAQLTEIHGVGSAKATSILAAVELGKEFF 104
>gi|58699143|ref|ZP_00373968.1| DNA repair protein RadC, putative [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58534343|gb|EAL58517.1| DNA repair protein RadC, putative [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 197
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 1/117 (0%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRI 87
R L+ AL EI+E L + + IAK L+ + +G + G + L+ I +
Sbjct: 11 RILESKGKALLDREIMETFLSAVHESPQAQEIAKNLVNTYTGVGRILGREMDDLKVIEGV 70
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ V +R+LK + + Q + + +
Sbjct: 71 TDSAVAMIMCVKETLERVLKEKLKSEPIMDL-QGIVEYLNVSIGHSERECVKILYLN 126
>gi|54022910|ref|YP_117152.1| putative DNA repair protein [Nocardia farcinica IFM 10152]
gi|54014418|dbj|BAD55788.1| putative DNA repair protein [Nocardia farcinica IFM 10152]
Length = 230
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 1/119 (0%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+R L G AL+ E+L L+L + +A LL + G+ A L
Sbjct: 14 QRPRERLLTLGPMALSDGELLALLLGQGRRGASALELAAELLADHGGIAGLAAARPEELA 73
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
+G A L +A + LT +
Sbjct: 74 RRTGVGSAKAAALIAAFHLG-HRARAESAAAPRLTHAAEVARVAAPLFAGARVERLLVL 131
>gi|227354791|ref|ZP_03839208.1| DNA repair protein [Proteus mirabilis ATCC 29906]
gi|227165109|gb|EEI49940.1| DNA repair protein [Proteus mirabilis ATCC 29906]
Length = 165
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 27/73 (36%)
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
+ A L IG +L+ ++ +QR +K + K L+ +++
Sbjct: 1 MINADYETLGCFKGIGVGKFTQLQAINEMAQRFIKTKFMHKNILSSSAETKSYLQKRLNW 60
Query: 133 KNANNFAYCFSIN 145
++ F F N
Sbjct: 61 RDREVFVVLFLDN 73
>gi|158312692|ref|YP_001505200.1| DNA repair protein RadC [Frankia sp. EAN1pec]
gi|158108097|gb|ABW10294.1| DNA repair protein RadC [Frankia sp. EAN1pec]
Length = 220
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 32/83 (38%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
R R+R L G ALA E+L L+L P D +A L+ R L + A L
Sbjct: 9 RERPRERALAAGAEALADRELLALLLGSGSPGCDAVDLAGRLIARHGGLYELSRADPQEL 68
Query: 82 QEINRIGKRVALELKLVSVASQR 104
+G A + +R
Sbjct: 69 IAQPGVGPAKAARVCAAFHLGRR 91
>gi|323166876|gb|EFZ52615.1| DNA repair radC domain protein [Shigella sonnei 53G]
Length = 67
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVF 74
R++ L+ G +AL E+L L L KD ++AK +L+ F +L G+
Sbjct: 12 PREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLL 61
>gi|167561868|ref|ZP_02354784.1| DNA repair protein RadC [Burkholderia oklahomensis EO147]
Length = 173
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 22/79 (27%)
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
RF +L + A + + IG L V ++R L + +
Sbjct: 2 RFGSLRALLDAAPGDFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVEDY 61
Query: 126 VERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 62 LRLLIGTRQHEVFVCLFLD 80
>gi|330941093|gb|EGH43995.1| hypothetical protein PSYPI_16995 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 153
Score = 65.4 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 8/60 (13%), Positives = 19/60 (31%)
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+G +L+ V ++R + + + L ++ + F F N
Sbjct: 2 GLGPAKFAQLQAVMEMARRHMAESLRRESALENPTQVRGYLKALLRHEPHEVFGCLFLDN 61
>gi|229918383|ref|YP_002887029.1| DNA repair protein RadC [Exiguobacterium sp. AT1b]
gi|229469812|gb|ACQ71584.1| DNA repair protein RadC [Exiguobacterium sp. AT1b]
Length = 209
Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 35/102 (34%)
Query: 43 LELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVAS 102
+ +L D A+ + + TL + A +H L +I + K+ A +L
Sbjct: 13 IARLLQIGGRGPDPMETARRISDVYPTLRALSQASVHDLCKIEGMTKKKAEQLLAAFTIG 72
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
R ++ + + Q + + N +F +
Sbjct: 73 IRYVEEPKASMPTIRSPQDAYELLRDELRLLNQEHFVCLYLN 114
>gi|313501259|gb|ADR62625.1| RadC [Pseudomonas putida BIRD-1]
Length = 175
Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 9/80 (11%), Positives = 24/80 (30%)
Query: 65 KRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
+F +L + A +G +L+ + +R L + + +
Sbjct: 1 MKFGSLRRLLEADREAFVGELGLGPVRYSQLQALLEIGRRHLATSIERESAMDSPAAVRR 60
Query: 125 SVERHYPMKNANNFAYCFSI 144
++ + + F F
Sbjct: 61 YLKAMLRHEASEVFGCLFLD 80
>gi|289432022|ref|YP_003461895.1| DNA repair protein-like protein [Dehalococcoides sp. GT]
gi|288945742|gb|ADC73439.1| DNA repair protein-like protein [Dehalococcoides sp. GT]
Length = 386
Score = 64.6 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 53/106 (50%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
S+ + GH RLR+RF+ ++ + +LEL+L IP+KD + IAK LL + ++ +
Sbjct: 2 SNPENKGHRQRLRERFINGDASSRSEEALLELLLTYAIPQKDVQPIAKRLLAEYGSVSSL 61
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPG 119
AP+ L + I + A+ +KLV + + K+
Sbjct: 62 LEAPIERLVQTQEIKEASAVLIKLVDYIQREYKPNHQLAKEVTASP 107
>gi|213418639|ref|ZP_03351705.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 167
Score = 64.6 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 10/72 (13%), Positives = 24/72 (33%)
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
+ A + +N IG +LK ++ ++R + + L + ++
Sbjct: 3 LLSADFAQFRGVNGIGLAKFAQLKGIAELARRYYSVRMNEESALLSPEMTREFLQSQLTG 62
Query: 133 KNANNFAYCFSI 144
+ F F
Sbjct: 63 EEREIFLVIFLD 74
>gi|323166879|gb|EFZ52618.1| DNA repair radC domain protein [Shigella sonnei 53G]
Length = 171
Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 10/78 (12%), Positives = 25/78 (32%)
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
+L G+ + ++ IG +LK ++ ++R + L + +
Sbjct: 1 MESLPGLLTSEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFL 60
Query: 127 ERHYPMKNANNFAYCFSI 144
+ + F F
Sbjct: 61 QSQLTGEEREIFMVIFLD 78
>gi|254420570|ref|ZP_05034294.1| DNA repair protein RadC [Brevundimonas sp. BAL3]
gi|196186747|gb|EDX81723.1| DNA repair protein RadC [Brevundimonas sp. BAL3]
Length = 192
Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Query: 46 ILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRI 105
+L R + + L+ RF LG + A L L I +G L+LKL+ S R+
Sbjct: 1 MLDRSLAGTAVDRVTADLIDRFGGLGEIVAADLPELGRITGLGPTAILDLKLLRQLSIRL 60
Query: 106 LKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI--NII 147
++ + LT + F + NI+
Sbjct: 61 TRSTACARPVLTSWNALVAYARVALAHSPREQFRALYLDRRNIL 104
>gi|332084818|gb|EGI90001.1| DNA repair protein radC [Shigella boydii 5216-82]
Length = 188
Score = 63.8 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 30/84 (35%)
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120
+ +L+ F +L G+ + ++ IG +LK ++ ++R + L +
Sbjct: 12 EKMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPE 71
Query: 121 PCLISVERHYPMKNANNFAYCFSI 144
++ + F F
Sbjct: 72 MTREFLQSQLTGEERKIFMVIFLD 95
>gi|317057607|ref|YP_004106074.1| DNA repair protein RadC [Ruminococcus albus 7]
gi|315449876|gb|ADU23440.1| DNA repair protein RadC [Ruminococcus albus 7]
Length = 229
Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Query: 18 YIGHHNRLRDRFLQ-KGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGA 76
+ GH R+R+RF Q N + +E+LE++L+ +IPR DT + A ALL F L V A
Sbjct: 7 HSGHRERMRERFRQSFDLNGFSDHEVLEMLLYNIIPRADTAAAAHALLDTFGNLRTVLSA 66
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+ L + IG R A +L + R K ++ + +
Sbjct: 67 DIDSLTAVKGIGLRCAEQLLFLGQVFLRAEKESFVSVHA-DDFDSLSRYLLNFFKGDTTE 125
Query: 137 NFAYCFSIN 145
FSIN
Sbjct: 126 RLCA-FSIN 133
>gi|281422132|ref|ZP_06253131.1| DNA repair protein RadC [Prevotella copri DSM 18205]
gi|281403921|gb|EFB34601.1| DNA repair protein RadC [Prevotella copri DSM 18205]
Length = 218
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 4/119 (3%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLK-RFATLGGVFGAPLHLLQEINR 86
+ G L E++ L++ + A+ + +L + A + LQ +
Sbjct: 8 KAYNNGLGNLTTVELISLVIGTGTQKN--VEQARQIFNVMEESLRNIAKARVEDLQVVQG 65
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
IG A+ L+ +R N + + L + H +N
Sbjct: 66 IGDSKAIALQAAIELGKRYSLENMAERPDLGSSLAIYNFLYPHVKDLEVEECH-LLLMN 123
>gi|99034811|ref|ZP_01314729.1| hypothetical protein Wendoof_01000449 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 85
Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 20 GHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH 79
GH RLR++ + +L YE+LE IL+ R D K +AK+L++ F +L VF A L
Sbjct: 8 GHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPVAKSLIESFGSLNKVFNADLE 67
Query: 80 LLQEI 84
LQ +
Sbjct: 68 ALQNV 72
>gi|52425995|ref|YP_089132.1| RadC protein [Mannheimia succiniciproducens MBEL55E]
gi|52308047|gb|AAU38547.1| RadC protein [Mannheimia succiniciproducens MBEL55E]
Length = 104
Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R++ L+ G N L E+L + L I +++A+L F +L + A H
Sbjct: 29 PREKLLKFGANTLDNKELLAIFLRTGIKNCPVMQLSEAVLTHFGSLRQLINADRHNFA 86
>gi|329113315|ref|ZP_08242096.1| DNA repair protein RadC [Acetobacter pomorum DM001]
gi|326697140|gb|EGE48800.1| DNA repair protein RadC [Acetobacter pomorum DM001]
Length = 254
Score = 61.5 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 3/110 (2%)
Query: 38 AYYEILELILFRLIPR-KDTKSIAKALLKRFATLGGVFGA-PLHLLQE-INRIGKRVALE 94
+ +L ++ + PR + A+ LL + L V A + I + + +
Sbjct: 52 TDFSLLCRLIVQAQPRNAKAQEQAQNLLHEYGNLSAVMAAISWQEPSKSIKALPEAARVL 111
Query: 95 LKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L L RI +A L + + F
Sbjct: 112 LMLARETGLRIQRARLRRSGILADSTQLYAYLRAVMGPEKREQVRVLFLN 161
>gi|86159682|ref|YP_466467.1| DNA repair protein RadC [Anaeromyxobacter dehalogenans 2CP-C]
gi|85776193|gb|ABC83030.1| DNA repair protein RadC [Anaeromyxobacter dehalogenans 2CP-C]
Length = 203
Score = 61.1 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 16/120 (13%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEI 84
LR+R L G AL+ E+L ++ + +A + L+ +
Sbjct: 6 LRERLLMDGPRALSDVELLTMLGAGGAASRPVPELA--------------WLTVAELRRL 51
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+G+ A L +R A + + F
Sbjct: 52 -GVGEARAAALAAAFELGRRGAWAPPKRGERCLDPGRVYELMRP-LAHAPVEEFHVVLLD 109
>gi|330993528|ref|ZP_08317463.1| UPF0758 protein [Gluconacetobacter sp. SXCC-1]
gi|329759558|gb|EGG76067.1| UPF0758 protein [Gluconacetobacter sp. SXCC-1]
Length = 223
Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 1/107 (0%)
Query: 39 YYEILELILFRLIPRKDTKS-IAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKL 97
+ ++ ++ L P +A LL RF + G + A + L E+ G + L +
Sbjct: 23 DHAFVQRLIRTLDPAHPAPDRLAADLLARFGSAGMMLSAHVGALDEVAGRGTVMPPLLAV 82
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
A+ R+ + L+ ++ + F F
Sbjct: 83 AREAALRLYRGRVRRTDVLSGQAGLEAYLQACMGHEVIEQFRVLFLD 129
>gi|258542143|ref|YP_003187576.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-01]
gi|256633221|dbj|BAH99196.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-01]
gi|256636280|dbj|BAI02249.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-03]
gi|256639333|dbj|BAI05295.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-07]
gi|256642389|dbj|BAI08344.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-22]
gi|256645444|dbj|BAI11392.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-26]
gi|256648497|dbj|BAI14438.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-32]
gi|256651550|dbj|BAI17484.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654541|dbj|BAI20468.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-12]
Length = 249
Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 38 AYYEILELILFRLIPR-KDTKSIAKALLKRFATLGGVFGA-PLHLLQE-INRIGKRVALE 94
+L ++ + PR + A+ LL + + V A H + I + + V +
Sbjct: 47 TDLALLCRLIAQAQPRNAKAQEQARNLLHEYGSFSAVMAAISWHEPSKSIKALPEAVRVL 106
Query: 95 LKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
L L A RI +A L + + F +
Sbjct: 107 LMLAREAGLRIQRARLRRSGILADSTQLYAYLRAVMGPEKREQVRVLFLND 157
>gi|262168070|ref|ZP_06035769.1| DNA repair protein RadC [Vibrio cholerae RC27]
gi|262023603|gb|EEY42305.1| DNA repair protein RadC [Vibrio cholerae RC27]
Length = 151
Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 21/59 (35%)
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+G+ ++L+ V +QR L LT Q + + + F F N
Sbjct: 1 MGEAKFVQLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDN 59
>gi|296115179|ref|ZP_06833820.1| DNA repair protein RadC [Gluconacetobacter hansenii ATCC 23769]
gi|295978280|gb|EFG85017.1| DNA repair protein RadC [Gluconacetobacter hansenii ATCC 23769]
Length = 230
Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 1/115 (0%)
Query: 31 QKGENALAYYEILELILFRLIPR-KDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGK 89
+ +L +L L P D + LL RF + G A H L +
Sbjct: 18 AGDGGEMDDRALLRHVLCTLEPGNADIDMLLDILLARFGSAGMALSAHPHDLDAVLGTHP 77
Query: 90 RVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++ + V A+ R+ +A L+ + ++ F F
Sbjct: 78 LLSPMIATVREAALRMHRAYVRHGDALSGHGRIVDYLQAVMAHDCTEQFRVLFLD 132
>gi|213421314|ref|ZP_03354380.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 60
Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFG 75
R++ L+ G +L+ E+L L L P KD ++AK
Sbjct: 9 PREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKGYCSTLGRCMACCR 59
>gi|319654832|ref|ZP_08008908.1| hypothetical protein HMPREF1013_05530 [Bacillus sp. 2_A_57_CT2]
gi|317393550|gb|EFV74312.1| hypothetical protein HMPREF1013_05530 [Bacillus sp. 2_A_57_CT2]
Length = 218
Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 11/124 (8%), Positives = 35/124 (28%), Gaps = 9/124 (7%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
++ G + +L +++ P+ + + + + L +
Sbjct: 13 KEELGFYGFENTSLQNLLAVLIG---PKANPVVTGQ---LSSLGVKRLSSLSKEELLQYE 66
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI- 144
IG+ A + + + K + + + + +F F
Sbjct: 67 GIGETTADRIIACIGLAGLLNKFKFEECYIVRSPEDAAKY-MSDMSTLDQEHFEVLFLNS 125
Query: 145 -NII 147
N++
Sbjct: 126 KNVV 129
>gi|301063914|ref|ZP_07204389.1| conserved hypothetical protein [delta proteobacterium NaphS2]
gi|300441989|gb|EFK06279.1| conserved hypothetical protein [delta proteobacterium NaphS2]
Length = 78
Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGG 72
+R R++ +KG AL +E+L ++L D ++AK +L + G
Sbjct: 11 DRPREKLQKKGAKALPDHELLAILLGSDSRSHDVMTLAKHILNVTPSKGD 60
>gi|317123022|ref|YP_004103025.1| DNA repair protein RadC [Thermaerobacter marianensis DSM 12885]
gi|315593002|gb|ADU52298.1| DNA repair protein RadC [Thermaerobacter marianensis DSM 12885]
Length = 351
Score = 58.8 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHH-------NRLRDRFLQKGENALAYYEILELILFRLI-P 52
+ R + P + +R R+R L G L+ ++L +++
Sbjct: 29 VPAPRAGRQPVSAPAHRHRSPRVKDLPPSDRPRERLLAGGAATLSNVDLLAILIGSGTGR 88
Query: 53 RKDTKSIAKALL 64
+ +A+ +L
Sbjct: 89 GESALDLARKVL 100
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 1/72 (1%)
Query: 73 VFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPM 132
+ A L +I IG A ++ +R+ A + + +
Sbjct: 185 LASARAEELCQIPGIGPARAAQIVAAVELGRRLAAARPVRPRV-RCPEDVGRLLMAGMKD 243
Query: 133 KNANNFAYCFSI 144
+ +
Sbjct: 244 LDREHLYVVLLN 255
>gi|304385266|ref|ZP_07367611.1| DNA repair protein RadC [Pediococcus acidilactici DSM 20284]
gi|304328473|gb|EFL95694.1| DNA repair protein RadC [Pediococcus acidilactici DSM 20284]
Length = 222
Score = 58.4 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 32/119 (26%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
R++ + G L E+L L + +++ + + G Q I
Sbjct: 8 REKLTKIGAENLTNAELLRAFLSCCGQEQAVNRLSQEFWDQVGDIVGYSLLTQRERQTIF 67
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+L L+ +R+ + + + + + +
Sbjct: 68 SQLPAESLALEAAIELGRRVQRQPIHLLGKVLGSAQIGNLMVARFQKNPQEHLVLLCLD 126
>gi|270290994|ref|ZP_06197217.1| DNA repair protein [Pediococcus acidilactici 7_4]
gi|270280390|gb|EFA26225.1| DNA repair protein [Pediococcus acidilactici 7_4]
Length = 225
Score = 58.4 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 32/119 (26%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
R++ + G L E+L L + +++ + + G Q I
Sbjct: 11 REKLTKIGAENLTNAELLRAFLSCCGQEQAVNRLSQEFWDQVGDIVGYSLLTQRERQTIF 70
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+L L+ +R+ + + + + + +
Sbjct: 71 SQLPAESLALEAAIELGRRVQRQPIHLLGKVLGSAQIGNLMVARFQKNPQEHLVLLCLD 129
>gi|42520373|ref|NP_966288.1| DNA repair protein RadC, truncation [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410111|gb|AAS14222.1| DNA repair protein RadC, truncation [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 135
Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+ R L+ AL E++E L + R++ + IA+ L+ F +GGV G + L
Sbjct: 11 REEIEFRALESNGKALLDREVIETFLSAVHDREEARIIARKLIDSFG-IGGVLGQEIDDL 69
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
+ I I + + A++R+ + + + + + ++
Sbjct: 70 KTIEGITDSTVAVVLCLKEAAKRVPREELKKGPVMDNLETIVKYLRVSIGVR-QEV 124
>gi|313903074|ref|ZP_07836468.1| DNA repair protein RadC [Thermaerobacter subterraneus DSM 13965]
gi|313466576|gb|EFR62096.1| DNA repair protein RadC [Thermaerobacter subterraneus DSM 13965]
Length = 299
Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLI-PRKDTKSIAKALLKRFATLGGVFGAPLHLL 81
+R R+R L G +L+ ++L +++ + +A+ +L + + G
Sbjct: 19 DRPRERLLAGGAASLSTVDLLAILIGSGTGRGESALDLARRVLA-WGSRGSTRRLQQDEP 77
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
+ L + A L++I IG A ++ +R L W ++ + +
Sbjct: 126 EWDALQWLASARAEELRQIPGIGPARAAQIVAGVELGRR-LATAWPVRPRVRGPEDVSRL 184
Query: 126 VERHYPMKNANNFAY 140
+ + +
Sbjct: 185 LMAGMKDLDREHLYV 199
>gi|197105875|ref|YP_002131252.1| DNA repair protein RadC [Phenylobacterium zucineum HLK1]
gi|196479295|gb|ACG78823.1| DNA repair protein RadC [Phenylobacterium zucineum HLK1]
Length = 256
Score = 57.3 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 2/111 (1%)
Query: 34 ENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVAL 93
L+ E++ ++ +D+++ A+ L+ LG L+ IG L
Sbjct: 54 AAQLSDAELVARVIDPRRRSRDSEARARLCLESCGGLGPALALADPRLERQ--IGAEACL 111
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+L+LV AS R + ++F + + + +F F
Sbjct: 112 QLRLVREASIRTTRGAVISRRFDANAKRTHDYLRALLEFETRESFRVIFLD 162
>gi|254441970|ref|ZP_05055456.1| DNA repair protein RadC [Octadecabacter antarcticus 307]
gi|198250592|gb|EDY74914.1| DNA repair protein RadC [Octadecabacter antarcticus 307]
Length = 189
Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 9/93 (9%)
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVAS-------QRILKANWSIKKFL 116
L+ A+ + A + RV+ +L + S A R+ +A + +
Sbjct: 9 LQLHASCDLFWRATHVKTTAHSGHDVRVSDQLAMHSAAPFITALGNHRMARAKVMQRHVI 68
Query: 117 TPGQPCLISVERHYPMKNANNFAYCFSI--NII 147
+ L ++ F F N++
Sbjct: 69 SSWDAMLDYCHTVMAHRDTEQFRVLFLDRKNVL 101
>gi|330824214|ref|YP_004387517.1| DNA repair protein RadC [Alicycliphilus denitrificans K601]
gi|321116516|dbj|BAJ72215.1| DNA repair protein RadC [Acidovorax sp. KKS102]
gi|329309586|gb|AEB84001.1| DNA repair protein RadC [Alicycliphilus denitrificans K601]
Length = 168
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 6/60 (10%), Positives = 19/60 (31%)
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ G+ + + A++++++ + T + + FA F
Sbjct: 16 DGRGRYRLADADQILEAARQVIEQKMQRGEAFTSPEAVKDYLRAKLAGFEHEVFAVLFLD 75
>gi|167752470|ref|ZP_02424597.1| hypothetical protein ALIPUT_00721 [Alistipes putredinis DSM 17216]
gi|167659539|gb|EDS03669.1| hypothetical protein ALIPUT_00721 [Alistipes putredinis DSM 17216]
Length = 214
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 5/118 (4%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLLQEINR 86
+ L +G L E+LEL+L D++ +A ALL F L + A + L+
Sbjct: 7 KLLSRGVETLTDQELLELLLDDG----DSERLAGALLSSFEGRLAALGYADIARLRMAAG 62
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
IG + A ++ +R+L A + + +
Sbjct: 63 IGLKRAARIQAAVELGRRVLAARELGPDPIGSSNDVVRIFRPLLTEMKHEECWCLYLN 120
>gi|291514569|emb|CBK63779.1| DNA repair protein radc [Alistipes shahii WAL 8301]
Length = 212
Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 8/118 (6%)
Query: 27 DRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRF-ATLGGVFGAPLHLLQEIN 85
D+ +G AL+ E+L L+ + + +A+ +L + +L + P L+ +
Sbjct: 6 DKMASRGVEALSDRELLALL-------TEDEQLAEVVLSAYDGSLARIGDQPEARLRMVG 58
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+G + A L + +R + + S F+ G + + +
Sbjct: 59 GLGLKRARMLLAAAEFGRRAVASGGSGSDFINTGDDVVRLFRPQLERLSHEECWVVYL 116
>gi|323339483|ref|ZP_08079762.1| DNA repair protein RadC [Lactobacillus ruminis ATCC 25644]
gi|323093097|gb|EFZ35690.1| DNA repair protein RadC [Lactobacillus ruminis ATCC 25644]
Length = 224
Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 1/117 (0%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRI 87
R + G +L+ E+L +L + K A K F+ L + + +
Sbjct: 15 RIKRFGVQSLSDKELLYYLLNVKMQSKKASEACNAFFKDFSGLFQIKDFVPENWELLLG- 73
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+L ++ + S+R+ + + F
Sbjct: 74 NDEQSLLMEAICEFSKRMKCQFKLPLGQFCSSSVVGKYMIDVLGDEKQEALVCFFLD 130
>gi|310639685|ref|YP_003944443.1| DNA repair protein-like protein [Paenibacillus polymyxa SC2]
gi|309244635|gb|ADO54202.1| DNA repair protein-like protein [Paenibacillus polymyxa SC2]
Length = 199
Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 1/104 (0%)
Query: 41 EILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSV 100
E L ++ + ++ + + LL +F TL + A L I I A ++ +
Sbjct: 4 EKLRTLISTFMNKRAEDDLIEELLIQFPTLTQLMNATEQQLISIKGIKHSKAKKIMTLLQ 63
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ L S F++ + +E + +F
Sbjct: 64 LA-NTLTLPESNPYFISHPRDVYNLLEPEFRFSTKEHFICLLLN 106
>gi|227354792|ref|ZP_03839209.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906]
gi|227165110|gb|EEI49941.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906]
Length = 50
Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALL 64
R++ L G +L E+L + L K +A LL
Sbjct: 11 PREKLLLHGVESLTDAELLAIFLRTGTYEKSVLELADFLL 50
>gi|167465896|ref|ZP_02330985.1| RadC [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 145
Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 4/51 (7%), Positives = 15/51 (29%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+++ +RI ++ + + + + +F F
Sbjct: 2 QIQEGIELGRRIARSTLPETMVIRSPRDVADLMTEDLRYLHKEHFVCLFLN 52
>gi|309800342|ref|ZP_07694510.1| DNA repair protein RadC [Streptococcus infantis SK1302]
gi|308116029|gb|EFO53537.1| DNA repair protein RadC [Streptococcus infantis SK1302]
Length = 175
Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 29/81 (35%)
Query: 64 LKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123
+ + L + L LQ ++ IG+ A+EL+ + RI K + + Q
Sbjct: 1 MNQLNCLTDLKKMTLQELQSLSGIGRVKAIELQAMIELGSRIHKQETIEAESILSSQRLA 60
Query: 124 ISVERHYPMKNANNFAYCFSI 144
++ K + +
Sbjct: 61 KKMQAELGDKKQEHLVALYLN 81
>gi|94310183|ref|YP_583393.1| DNA repair protein RadC [Cupriavidus metallidurans CH34]
Length = 138
Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 6/60 (10%), Positives = 19/60 (31%)
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ G+ + + A++++++ + T + + FA F
Sbjct: 16 DGRGRYRPADADQILEAARQVIEQKMQRGEAFTSPEAVKDYLRAKLAGFEHEVFAVLFLD 75
>gi|220935036|ref|YP_002513935.1| DNA repair protein RadC [Thioalkalivibrio sp. HL-EbGR7]
gi|219996346|gb|ACL72948.1| DNA repair protein RadC [Thioalkalivibrio sp. HL-EbGR7]
Length = 168
Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 5/60 (8%), Positives = 18/60 (30%)
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ G+ + + A++++++ + + + FA F
Sbjct: 16 DGRGRYRPADADQILEAARQVIEQKMQRGASFSSPEAVKDYLRAKLAGFEHEVFAVLFLD 75
>gi|226945653|ref|YP_002800726.1| DNA repair protein RadC-like protein [Azotobacter vinelandii DJ]
gi|226720580|gb|ACO79751.1| DNA repair protein RadC-like protein [Azotobacter vinelandii DJ]
Length = 168
Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 5/60 (8%), Positives = 17/60 (28%)
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ G+ + + A++++++ + + FA F
Sbjct: 16 DGRGRYRPADADQILEAARQVIEQKMQRGEAFASPSAVKDYLRAKLAGFEHEVFAVLFLD 75
>gi|222112697|ref|YP_002554961.1| DNA repair protein Radc [Acidovorax ebreus TPSY]
gi|221732141|gb|ACM34961.1| DNA repair protein RadC [Acidovorax ebreus TPSY]
Length = 169
Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 6/57 (10%), Positives = 15/57 (26%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G+ + + A+++ ++ T + FA F
Sbjct: 20 GRYLLATTDQILEAARQAIEHKMQRGASFTSPAAVKEYLCAKLAGYEHEVFAVLFLD 76
>gi|161525489|ref|YP_001580501.1| DNA repair protein RadC [Burkholderia multivorans ATCC 17616]
gi|189349783|ref|YP_001945411.1| DNA repair protein [Burkholderia multivorans ATCC 17616]
gi|160342918|gb|ABX16004.1| DNA repair protein RadC [Burkholderia multivorans ATCC 17616]
gi|189333805|dbj|BAG42875.1| DNA repair protein [Burkholderia multivorans ATCC 17616]
Length = 169
Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 6/57 (10%), Positives = 14/57 (24%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G+ + A+++++ T + FA F
Sbjct: 20 GRYRQASADQILEAARQVIDQKMQRGDEFTSPAAVKDYLRAKLAGFEHEVFAVLFLD 76
>gi|116050520|ref|YP_790661.1| RadC-like protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|115585741|gb|ABJ11756.1| RadC-like protein [Pseudomonas aeruginosa UCBPP-PA14]
Length = 168
Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 5/60 (8%), Positives = 16/60 (26%)
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ G+ + + A+++++ + + FA F
Sbjct: 16 DGRGRYRPADADQILEAARQVIDQKMQRGASFSSPAAVKDYLRAKLAGFEHEVFAVLFLD 75
>gi|163856483|ref|YP_001630781.1| DNA repair protein radC-like protein [Bordetella petrii DSM 12804]
gi|163260211|emb|CAP42513.1| DNA repair protein radC homolog [Bordetella petrii]
Length = 132
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 6/60 (10%), Positives = 19/60 (31%)
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ G+ + + A++++++ + T + + FA F
Sbjct: 16 DGRGRYRPADADQILEAARQVIEQKMQRGETFTSPEAVKDYLRAKLAGYEHEVFAMLFLD 75
>gi|32476078|ref|NP_869072.1| DNA repair protein [Rhodopirellula baltica SH 1]
gi|32446622|emb|CAD76458.1| DNA repair protein [Rhodopirellula baltica SH 1]
Length = 319
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/121 (9%), Positives = 33/121 (27%), Gaps = 9/121 (7%)
Query: 33 GENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAPLHLLQEI-NRIGKR 90
G +L+ ++L +++ + + + L F + + + L+ I + K
Sbjct: 109 GAASLSNADLLAILIRVGVVGESATTGGTKLANHFDEVLDAIREQSVSELRHITKAVTKA 168
Query: 91 VALELKLVSVASQR---ILKANWSIKKFLTPGQPCLISVERHYPMKN----ANNFAYCFS 143
++ +R + +T + + F
Sbjct: 169 SYCQIMAGIELGRRATEAARERPVPIVKITSTTEATEYCAQKFAYLAGDAVQEEFHIVTL 228
Query: 144 I 144
Sbjct: 229 D 229
>gi|162147769|ref|YP_001602230.1| putative DNA repair protein radC [Gluconacetobacter diazotrophicus
PAl 5]
gi|209542391|ref|YP_002274620.1| DNA repair protein RadC [Gluconacetobacter diazotrophicus PAl 5]
gi|161786346|emb|CAP55928.1| putative DNA repair protein radC [Gluconacetobacter diazotrophicus
PAl 5]
gi|209530068|gb|ACI50005.1| DNA repair protein RadC [Gluconacetobacter diazotrophicus PAl 5]
Length = 221
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 36/93 (38%)
Query: 52 PRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWS 111
P D A+ALL RF T+G VF A L ++ + + L+ A+ R+++A
Sbjct: 36 PGADPADAARALLARFGTIGAVFAADPAELASAVAGRLQIRVIVPLLREAAIRLMRARIR 95
Query: 112 IKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L+ + ++ F F
Sbjct: 96 QGDLLSCHDALMAYLQASLARDTVEQFRVLFLD 128
>gi|327541466|gb|EGF28004.1| DNA repair protein RadC [Rhodopirellula baltica WH47]
Length = 314
Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/121 (9%), Positives = 32/121 (26%), Gaps = 9/121 (7%)
Query: 33 GENALAYYEILELILFRLIPRKDTKSIAKALLKRFATL-GGVFGAPLHLLQEI-NRIGKR 90
G +L+ ++L +++ + + + L F + + L+ I + K
Sbjct: 104 GAASLSNADLLAILIRVGVVGESATTGGTKLANHFDEELDAIREKSVSELRHITKAVTKA 163
Query: 91 VALELKLVSVASQR---ILKANWSIKKFLTPGQPCLISVERHYPMKN----ANNFAYCFS 143
++ +R + +T + + F
Sbjct: 164 SYCQIMAGIELGRRATEAARERPVPIVKITSTTEATEYCAQKFAYLAGDAVQEEFHIVTL 223
Query: 144 I 144
Sbjct: 224 D 224
>gi|121582744|ref|YP_973186.1| DNA repair protein RadC [Polaromonas naphthalenivorans CJ2]
gi|120596006|gb|ABM39444.1| DNA repair protein RadC [Polaromonas naphthalenivorans CJ2]
Length = 168
Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 17/57 (29%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G V A+QR+L A ++ LT Q + FA
Sbjct: 19 GDYRPANADEVLQAAQRLLGAQLRGREVLTSPQAVRDFLRVKLGGLEHEVFAVLMLD 75
>gi|300214742|gb|ADJ79158.1| DNA repair protein [Lactobacillus salivarius CECT 5713]
Length = 225
Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 35/118 (29%), Gaps = 1/118 (0%)
Query: 27 DRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINR 86
D+ ++ G L E+L+ IL + + K++ K L + L+ + +
Sbjct: 14 DKIIRFGAETLTNKELLQFILTTKVSQTSVKNVIKDFFDEHQRLNELQFFSDEGLKNLCK 73
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ ++ + S+R + + + +
Sbjct: 74 DDE-KVAIIRALREFSERYKEKEGLVLGQIFSSCMFGNYMIDKIGDSKQELLVCVCLD 130
>gi|90962045|ref|YP_535961.1| DNA repair protein [Lactobacillus salivarius UCC118]
gi|227891064|ref|ZP_04008869.1| DNA repair protein [Lactobacillus salivarius ATCC 11741]
gi|301300891|ref|ZP_07207063.1| DNA repair protein RadC [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821239|gb|ABD99878.1| DNA repair protein [Lactobacillus salivarius UCC118]
gi|227867153|gb|EEJ74574.1| DNA repair protein [Lactobacillus salivarius ATCC 11741]
gi|300851490|gb|EFK79202.1| DNA repair protein RadC [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 225
Score = 51.1 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 35/118 (29%), Gaps = 1/118 (0%)
Query: 27 DRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINR 86
D+ ++ G L E+L+ IL + + K++ K L + L+ + +
Sbjct: 14 DKIIRFGAETLTNKELLQFILTTKVSQTSAKNVIKDFFDEHQRLNELQFFSDEGLKNLCK 73
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ ++ + S+R + + + +
Sbjct: 74 DDE-KVAIIRALREFSERYKEKEGLVLGQIFSSCMFGNYMIDKIGDSKQELLVCVCLD 130
>gi|255292016|dbj|BAH90499.1| DNA repair protein RadC [uncultured bacterium]
gi|255292877|dbj|BAH89977.1| DNA repair protein RadC [uncultured bacterium]
gi|255292945|dbj|BAH90043.1| DNA repair protein RadC [uncultured bacterium]
gi|255293215|dbj|BAH90305.1| DNA repair protein RadC [uncultured bacterium]
Length = 169
Score = 51.1 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 6/57 (10%), Positives = 16/57 (28%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G+ + + + A+++ ++ T + FA F
Sbjct: 20 GRYLLATAEQILEAARQAIERKMQRGTSFTSPAAVKEYLRAKLAGFEHEVFAVLFMD 76
>gi|83311181|ref|YP_421445.1| DNA repair protein [Magnetospirillum magneticum AMB-1]
gi|82946022|dbj|BAE50886.1| DNA repair protein [Magnetospirillum magneticum AMB-1]
Length = 110
Score = 51.1 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 16/54 (29%)
Query: 91 VALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
A LK+V A+ R+ +A ++ L F F
Sbjct: 2 AAATLKVVREAAIRLARAPVINTSVISSWDVLLDYCRTAMNTLPTEQFRLLFLD 55
>gi|17547339|ref|NP_520741.1| hypothetical protein RSc2620 [Ralstonia solanacearum GMI1000]
gi|17429642|emb|CAD16327.1| probable dna repair radc-like protein [Ralstonia solanacearum
GMI1000]
Length = 169
Score = 50.7 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 6/57 (10%), Positives = 16/57 (28%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G+ + + + A+++ ++ T + FA F
Sbjct: 20 GRYLLATAEQILEAARQAIERKMQRGTSFTSPAAVKEYLRAKLAGFEHEVFAVLFMD 76
>gi|309800341|ref|ZP_07694509.1| DNA repair protein RadC [Streptococcus infantis SK1302]
gi|308116028|gb|EFO53536.1| DNA repair protein RadC [Streptococcus infantis SK1302]
Length = 59
Score = 50.7 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR 66
R+R + +G L+ E+L ++L + IA+ ++
Sbjct: 13 PRERLVTEGVECLSNQELLAILLRTGTRQSTVFEIAQKSIES 54
>gi|254241654|ref|ZP_04934976.1| DNA repair protein RadC [Pseudomonas aeruginosa 2192]
gi|126195032|gb|EAZ59095.1| DNA repair protein RadC [Pseudomonas aeruginosa 2192]
Length = 169
Score = 50.7 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 6/57 (10%), Positives = 16/57 (28%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G+ + + + A+++ ++ T + FA F
Sbjct: 20 GRYLLATAEQILEAARQAIERKMQRGTSFTSPAAVKEYLRAKLAGFEHEVFAVLFMD 76
>gi|187939929|gb|ACD39066.1| RadC family DNA repair protein [Pseudomonas aeruginosa]
Length = 169
Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 5/57 (8%), Positives = 15/57 (26%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G+ + + A+++ ++ + + FA F
Sbjct: 20 GRYLLATADQILEAARQAIEYKMQRGASFSSPVAVKEYLSAKLAGFEHEVFAVLFLD 76
>gi|59713705|ref|YP_206480.1| DNA repair protein RadC [Vibrio fischeri ES114]
gi|59481953|gb|AAW87592.1| DNA repair protein RadC [Vibrio fischeri ES114]
Length = 157
Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 5/52 (9%), Positives = 11/52 (21%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + + + FA N
Sbjct: 15 QENEILEHAAEILANRYVRGDAFSNPTATQNYLRYKLGHYEREVFAVLLLDN 66
>gi|21242914|ref|NP_642496.1| RadC family protein [Xanthomonas axonopodis pv. citri str. 306]
gi|21108411|gb|AAM37032.1| RadC family protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 169
Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 5/57 (8%), Positives = 14/57 (24%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G+ ++ + A++ + + + FA F
Sbjct: 20 GRYRLASVEQILEAAREAIDQKMQRGTEFSSPAVVKEYLRAKLAGFEHEVFAVLFLD 76
>gi|126464466|ref|YP_001045579.1| DNA repair protein RadC [Rhodobacter sphaeroides ATCC 17029]
gi|126106277|gb|ABN78807.1| DNA repair protein RadC [Rhodobacter sphaeroides ATCC 17029]
Length = 138
Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 107 KANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI--NII 147
+A ++ + + + + F F N++
Sbjct: 8 QAKILKREVVGSWEALIAYCRTCMAHRETEQFRVLFLDSKNVV 50
>gi|119503524|ref|ZP_01625607.1| DNA repair protein RadC [marine gamma proteobacterium HTCC2080]
gi|119460586|gb|EAW41678.1| DNA repair protein RadC [marine gamma proteobacterium HTCC2080]
Length = 223
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 38 AYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKL 97
+ ++L L +P ++A + + +L + L+ + +G++ +L
Sbjct: 24 SDADLLSAAL--GLPDGTA-AVANYMSQHRGSLFESIASLLNCDIPLTGVGRQRRYQLSC 80
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + R+ + + L C ++ HY +++ F F
Sbjct: 81 ALLLATRLAEEELFERSPLKDPGSCYKYLQHHYLLQSREVFTCLFLD 127
>gi|302878190|ref|YP_003846754.1| DNA repair protein RadC [Gallionella capsiferriformans ES-2]
gi|302580979|gb|ADL54990.1| DNA repair protein RadC [Gallionella capsiferriformans ES-2]
Length = 205
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 10/113 (8%)
Query: 34 ENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAP-LHLLQEINRIGKRVA 92
+L+ ++L +++ K A+AL ++ A + + A
Sbjct: 8 AQSLSTPDLLTMLVG--------KDKAQALSHTSLSVLFGMRASRQTTVVCEKQPHYAPA 59
Query: 93 LELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ R L + + L ++ + F F
Sbjct: 60 AIISAAKELVMRALSEDITQNPINLNNPVEVKKYLKLLLGGRQQEVFVVLFLD 112
>gi|242239772|ref|YP_002987953.1| DNA repair protein RadC [Dickeya dadantii Ech703]
gi|242131829|gb|ACS86131.1| DNA repair protein RadC [Dickeya dadantii Ech703]
Length = 169
Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 5/52 (9%), Positives = 13/52 (25%)
Query: 93 LELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + A+++ ++ T + FA F
Sbjct: 25 ASVNQILEAARQAIELKMQRGAEFTSPTLVKEYLRNKLAGFEHEVFAVLFLD 76
>gi|121594972|ref|YP_986868.1| DNA repair protein RadC [Acidovorax sp. JS42]
gi|120607052|gb|ABM42792.1| DNA repair protein RadC [Acidovorax sp. JS42]
Length = 168
Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 6/60 (10%), Positives = 17/60 (28%)
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ G+ + + A++++++ T + FA F
Sbjct: 16 DGRGRYRPADADQILEAARKVIEQKMQRGAEFTSPVVVKKYLRTKLAGFEHEVFAVLFLD 75
>gi|188992052|ref|YP_001904062.1| DNA repair protein radC homolog [Xanthomonas campestris pv.
campestris str. B100]
gi|325915422|ref|ZP_08177736.1| DNA repair protein radc [Xanthomonas vesicatoria ATCC 35937]
gi|167733812|emb|CAP52018.1| DNA repair protein radC homolog [Xanthomonas campestris pv.
campestris]
gi|325538304|gb|EGD09986.1| DNA repair protein radc [Xanthomonas vesicatoria ATCC 35937]
Length = 159
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 12/45 (26%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
A+ IL+ + + + + F F N
Sbjct: 23 AAANILEQRLQRQGRIHSPDQAGDYLVARCAHLSHEVFGVVFLDN 67
>gi|124266851|ref|YP_001020855.1| hypothetical protein Mpe_A1658 [Methylibium petroleiphilum PM1]
gi|124259626|gb|ABM94620.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 169
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 8/57 (14%), Positives = 16/57 (28%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G+ + V ++R+L ++ Q + M F F
Sbjct: 20 GQYRPARAEEVLSQARRVLSQRVRRGATMSSPQAVKDHLRLEIGMLEHEVFCVLFLD 76
>gi|21243995|ref|NP_643577.1| RadC family protein [Xanthomonas axonopodis pv. citri str. 306]
gi|21109610|gb|AAM38113.1| RadC family protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 187
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 11/45 (24%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
A+ IL+ + + + F F N
Sbjct: 51 AAATILEQRLQRQGRIHSPDQAGDYLVARCAHLPHEVFGVVFLDN 95
>gi|86146760|ref|ZP_01065080.1| DNA repair protein [Vibrio sp. MED222]
gi|85835410|gb|EAQ53548.1| DNA repair protein [Vibrio sp. MED222]
Length = 156
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + T Q + FA N
Sbjct: 18 VLEKAAEILEDRYVRGDVFTNPQATRDYLRFKIGGSEREVFAVMLLDN 65
>gi|218709645|ref|YP_002417266.1| putative DNA repair protein; prophage protein [Vibrio splendidus
LGP32]
gi|218322664|emb|CAV18840.1| putative DNA repair protein; prophage protein [Vibrio splendidus
LGP32]
Length = 156
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + T Q + FA N
Sbjct: 18 VLEKAAEILEDRYVRGDVFTNPQATRDYLRFKIGGSEREVFAVMLLDN 65
>gi|84387383|ref|ZP_00990403.1| DNA repair protein [Vibrio splendidus 12B01]
gi|84377832|gb|EAP94695.1| DNA repair protein [Vibrio splendidus 12B01]
Length = 156
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + T Q + FA N
Sbjct: 18 VLEKAAEILEDRYVRGDVFTNPQATRDYLRFKIGGSEREVFAVMLLDN 65
>gi|269123054|ref|YP_003305631.1| DNA repair protein RadC [Streptobacillus moniliformis DSM 12112]
gi|268314380|gb|ACZ00754.1| DNA repair protein RadC [Streptobacillus moniliformis DSM 12112]
Length = 211
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 39 YYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLV 98
+E+L ++ + RK K A ++K++ + + +++ +N + K+ L+ V
Sbjct: 12 DFELLLNLIELVENRKIAKLQASEIIKKYGGISNILREDFKVIENMNILSKKTMKILENV 71
Query: 99 SVASQRIL-KANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI--NII 147
S+ IL + +K ++ + + ++ Y F + N++
Sbjct: 72 SLIYNHILFNECFGEEKKISCFEDLVKYLKFQYVDMEREVFKVLYFNTKNVL 123
>gi|262392610|ref|YP_003284464.1| DNA repair protein RadC [Vibrio sp. Ex25]
gi|262336204|gb|ACY49999.1| DNA repair protein RadC [Vibrio sp. Ex25]
Length = 158
Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 15/53 (28%)
Query: 93 LELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
EL + + L + + T ++ + FA F N
Sbjct: 15 SELNELLERAAEALAVKYKREGTFTNPTNVKEYLKLKLGSHDREVFAVMFLDN 67
>gi|254517357|ref|ZP_05129414.1| DNA repair protein RadC [gamma proteobacterium NOR5-3]
gi|219674195|gb|EED30564.1| DNA repair protein RadC [gamma proteobacterium NOR5-3]
Length = 177
Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 6/46 (13%), Positives = 14/46 (30%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+ + +L++ LT + + +FA F
Sbjct: 38 IIEKALALLESRLINSDALTSPVRVRQYCQLQLGHERDEHFACLFL 83
>gi|156936681|ref|YP_001436032.1| DNA repair protein RadC [Vibrio harveyi ATCC BAA-1116]
gi|156529928|gb|ABU75012.1| hypothetical protein VIBHAR_p08165 [Vibrio harveyi ATCC BAA-1116]
Length = 305
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 14/52 (26%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ L A+ K S + L+ + + F F N
Sbjct: 162 QAILDEAAAILESKLCISEQPALSSPEVVKNFCRYSLAAREHEVFGVIFLDN 213
>gi|283856582|ref|YP_003377816.1| DNA repair protein RadC [Zymomonas mobilis subsp. mobilis ZM4]
gi|283775591|gb|ADB28982.1| DNA repair protein RadC [Zymomonas mobilis subsp. mobilis ZM4]
Length = 169
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 5/47 (10%), Positives = 13/47 (27%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ A++++++ T + FA F
Sbjct: 30 ILEAARQVIELKIQRGAEFTSPALVKEYLRNKLAGFEHEVFAVLFLD 76
>gi|116493037|ref|YP_804772.1| DNA repair protein [Pediococcus pentosaceus ATCC 25745]
gi|116103187|gb|ABJ68330.1| DNA replication and repair protein RadC [Pediococcus pentosaceus
ATCC 25745]
Length = 219
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 10/119 (8%), Positives = 32/119 (26%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
+ + + G L+ E++ L + + + G + ++I
Sbjct: 8 KAKLKKVGAENLSNEELVRAFLDSFGQSQKINQLTNHFWDTIGDIAGYGLLSQNEKRKIF 67
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + L+ +RI K + + + + + +
Sbjct: 68 KNIPDATVALEAGIELGRRIQKQPIHLLGKVLGSAQLGQMMVSRFQKEPQEHLLVLCLD 126
>gi|323702262|ref|ZP_08113928.1| DNA repair protein RadC [Desulfotomaculum nigrificans DSM 574]
gi|323532752|gb|EGB22625.1| DNA repair protein RadC [Desulfotomaculum nigrificans DSM 574]
Length = 241
Score = 48.0 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 7/73 (9%), Positives = 20/73 (27%)
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
L + +A L ++++ KA S + + ++
Sbjct: 76 DFLNMSKEELMAYPGVKPSMAARLMAAFALTKKLSKAVPSNLVVIRGPEDVYHWLKDEVK 135
Query: 132 MKNANNFAYCFSI 144
+ + +F
Sbjct: 136 LLDREHFVAVLLN 148
>gi|119898338|ref|YP_933551.1| DNA repair protein [Azoarcus sp. BH72]
gi|119670751|emb|CAL94664.1| DNA repair protein [Azoarcus sp. BH72]
Length = 196
Score = 48.0 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 23/111 (20%), Gaps = 15/111 (13%)
Query: 34 ENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVAL 93
ALA +LE A+ + + + L R
Sbjct: 8 PTALADAALLERFFG---------PEAEDVWEGCDGSWS----KVVELAREPRTP--AWD 52
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L R S + L + + K F +
Sbjct: 53 ALACAIEILHRSFAEQLSARNVLDSPGVVRQFLRTFFEGKPYEIFVVLYLD 103
>gi|71908171|ref|YP_285758.1| DNA repair protein RadC [Dechloromonas aromatica RCB]
gi|71847792|gb|AAZ47288.1| DNA repair protein RadC [Dechloromonas aromatica RCB]
Length = 193
Score = 48.0 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 10/91 (10%), Positives = 20/91 (21%), Gaps = 4/91 (4%)
Query: 58 SIAKALLKRFATLGGVFGAPLHLLQEINRIGK----RVALELKLVSVASQRILKANWSIK 113
+ + LL + +G +A L + R L+
Sbjct: 10 DLVRELLAPTVCASSALPLHVSDAVANMGMGNLPETELAHRLDVARELLLRDLREQMCDS 69
Query: 114 KFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ Q + H F +
Sbjct: 70 PVMASPQVLRDWLRLHCAGLQHEVFLVIYLD 100
>gi|261820014|ref|YP_003258120.1| DNA repair protein RadC [Pectobacterium wasabiae WPP163]
gi|261604027|gb|ACX86513.1| DNA repair protein RadC [Pectobacterium wasabiae WPP163]
Length = 158
Score = 48.0 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 12/45 (26%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L+ + +T + + F F N
Sbjct: 22 MALALLERRVRKLEAMTSPEVVKAYLRLKLEHIEREVFVALFLNN 66
>gi|88705880|ref|ZP_01103589.1| radC-like protein yeeS [Congregibacter litoralis KT71]
gi|88699951|gb|EAQ97061.1| radC-like protein yeeS [Congregibacter litoralis KT71]
Length = 169
Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 5/44 (11%), Positives = 11/44 (25%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
A+++++ T + FA F
Sbjct: 33 AARQVIDQKIQRGMSFTSPALVKEYLCAKLAGFEHEVFAVLFLD 76
>gi|295425103|ref|ZP_06817808.1| DNA repair protein RadC [Lactobacillus amylolyticus DSM 11664]
gi|295065162|gb|EFG56065.1| DNA repair protein RadC [Lactobacillus amylolyticus DSM 11664]
Length = 207
Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 6/59 (10%), Positives = 13/59 (22%), Gaps = 1/59 (1%)
Query: 88 GKRVALELKLVSVASQRILK-ANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
G E+ + L+ + T + + F + N
Sbjct: 57 GPACDQEIAVAIEEVADRLRLSEPKRNTVFTSSREVGNYLANKLVGHKQEEFWVLYIDN 115
>gi|50119543|ref|YP_048710.1| putative DNA repair protein [Pectobacterium atrosepticum SCRI1043]
gi|49610069|emb|CAG73509.1| putative DNA repair protein [Pectobacterium atrosepticum SCRI1043]
Length = 137
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 13/45 (28%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L+ ++ +T + + F F N
Sbjct: 1 MALALLERKVRKREAMTSPEDVKAYLRFKLEHIEREVFVAMFLNN 45
>gi|117919701|ref|YP_868893.1| DNA repair protein RadC [Shewanella sp. ANA-3]
gi|117612033|gb|ABK47487.1| DNA repair protein RadC [Shewanella sp. ANA-3]
Length = 169
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 5/47 (10%), Positives = 12/47 (25%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ A+++++ T + FA F
Sbjct: 30 ILDAARQVIDQKIQRGMSFTSPTLVKEYLCAKLAGFEHEVFAVLFLD 76
>gi|254283335|ref|ZP_04958303.1| DNA repair protein RadC [gamma proteobacterium NOR51-B]
gi|219679538|gb|EED35887.1| DNA repair protein RadC [gamma proteobacterium NOR51-B]
Length = 223
Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 1/103 (0%)
Query: 42 ILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVA 101
+L + P + S+A AL + L + + I I L
Sbjct: 29 LLARAMGL-DPWEAGVSLANALRENNDCLRSLMRRIIGGPSAIGGIDDAARARLIAALEL 87
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +A + + C ++R + F+ +
Sbjct: 88 GDLLAEAGLYQRDLIASAVECRRFLQRRLGKQRREVFSALYLD 130
>gi|157370015|ref|YP_001478004.1| DNA repair protein RadC [Serratia proteamaculans 568]
gi|157321779|gb|ABV40876.1| DNA repair protein RadC [Serratia proteamaculans 568]
Length = 160
Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIK-KFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L+ + + T + F + N
Sbjct: 24 ALALLEQHLRKPGESFTSPDAVRHWLCLQMAGLEREVFMVLYLDN 68
>gi|255262024|ref|ZP_05341366.1| DNA repair protein RadC [Thalassiobium sp. R2A62]
gi|255104359|gb|EET47033.1| DNA repair protein RadC [Thalassiobium sp. R2A62]
Length = 62
Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 10 PSKDSHLDYI-GHHNRLRDRFLQKGENALAYYEILELIL 47
P+ Y+ H RLR RFLQ G +A+ YE+L+LIL
Sbjct: 24 PADAGAPSYLRDHRARLRVRFLQGGADAIPDYEMLKLIL 62
>gi|304559927|gb|ADM42591.1| DNA repair protein RadC family protein [Edwardsiella tarda FL6-60]
Length = 161
Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 5/66 (7%), Positives = 16/66 (24%), Gaps = 3/66 (4%)
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L + + ++ + L+ T ++ + F
Sbjct: 8 LTATSGLTPYAQRTIRRAINLLDKYLR---QPGISFTSSTAARDWLQLQLAGQEREVFMV 64
Query: 141 CFSINI 146
+ N+
Sbjct: 65 LYLDNL 70
>gi|169825547|ref|YP_001695722.1| DNA repair protein radC-like protein [Lysinibacillus sphaericus
C3-41]
gi|168994824|gb|ACA42363.1| DNA repair protein radC-like protein [Lysinibacillus sphaericus
C3-41]
Length = 204
Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 72 GVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
+F + LQ+I + ++ AL ++ V + + K ++ V
Sbjct: 40 DLFDMTIVELQDI-GLSRKEALRIRAVKGLLKIMNSERQGKVKSISNASEAAEYVMDEMK 98
Query: 132 MKNANNFAYCFSI 144
+F F
Sbjct: 99 NLKQEHFVCLFLD 111
>gi|328471743|gb|EGF42620.1| DNA repair protein [Vibrio parahaemolyticus 10329]
Length = 157
Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT V FA N
Sbjct: 15 QENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGGYEREVFALLLLDN 66
>gi|313109023|ref|ZP_07794996.1| RadC-like protein [Pseudomonas aeruginosa 39016]
gi|310881498|gb|EFQ40092.1| RadC-like protein [Pseudomonas aeruginosa 39016]
Length = 169
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 4/48 (8%), Positives = 11/48 (22%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ A+++++ T + F F
Sbjct: 29 DILEAARQVIDRKMRRGAEFTSPAAVKEYLRTKLASFEHEVFVVLFMD 76
>gi|121582506|ref|YP_974038.1| DNA repair protein RadC [Acidovorax sp. JS42]
gi|120608564|gb|ABM44303.1| DNA repair protein RadC [Acidovorax sp. JS42]
Length = 164
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 16/71 (22%)
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
A L I+ G+ V A+ IL ++
Sbjct: 1 MTASHIDLFTIDDNGQFQLASAGQVIEAALAILDEKVMRNGLISAPADASAFFSLRLGNL 60
Query: 134 NANNFAYCFSI 144
FA F
Sbjct: 61 EHEVFAAIFLD 71
>gi|71277925|ref|YP_269651.1| DNA repair protein, RadC family protein [Colwellia psychrerythraea
34H]
gi|71143665|gb|AAZ24138.1| DNA repair protein, RadC family protein [Colwellia psychrerythraea
34H]
Length = 158
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 14/48 (29%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ A+ IL + K T Q + K FA N
Sbjct: 20 ILDAAAEILACKYVRKDAFTSSQATKDFLRFKLANKEHEIFAVMLLDN 67
>gi|153834271|ref|ZP_01986938.1| DNA repair protein RadC [Vibrio harveyi HY01]
gi|148869373|gb|EDL68382.1| DNA repair protein RadC [Vibrio harveyi HY01]
Length = 305
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 14/52 (26%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ L A+ K S + L+ + + F F N
Sbjct: 162 QAVLDEAAAILKSKLCISDQPALSSPEMVKSFCRYSLAAREYEVFGVIFLDN 213
>gi|217973526|ref|YP_002358277.1| DNA repair protein RadC [Shewanella baltica OS223]
gi|217498661|gb|ACK46854.1| DNA repair protein RadC [Shewanella baltica OS223]
Length = 160
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 4/33 (12%), Positives = 6/33 (18%)
Query: 112 IKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ T Q + FA
Sbjct: 35 NPQAFTSPQLVKDYLRLKMAGYEREVFAVLLLD 67
>gi|330827407|ref|YP_004390645.1| DNA repair protein RadC [Alicycliphilus denitrificans K601]
gi|329312715|gb|AEB87129.1| DNA repair protein RadC [Alicycliphilus denitrificans K601]
Length = 164
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 16/71 (22%)
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
A L I+ G+ V A+ IL ++
Sbjct: 1 MTASHIDLFTIDDNGQFQLASAGQVIEAALAILDEKVMRNGLISAPADASAFFSLRLGSL 60
Query: 134 NANNFAYCFSI 144
FA F
Sbjct: 61 EHEVFAAIFLD 71
>gi|309783369|ref|ZP_07678079.1| DNA repair protein RadC-like protein [Ralstonia sp. 5_7_47FAA]
gi|308917913|gb|EFP63600.1| DNA repair protein RadC-like protein [Ralstonia sp. 5_7_47FAA]
Length = 164
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 16/71 (22%)
Query: 74 FGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMK 133
A L I+ G+ V A+ IL ++
Sbjct: 1 MTASHIDLFTIDDNGQFQLASAGQVIEAALAILDEKVMRNGLISAPADASAFFSLRLGSL 60
Query: 134 NANNFAYCFSI 144
FA F
Sbjct: 61 EHEVFAAIFLD 71
>gi|120599009|ref|YP_963583.1| DNA repair protein RadC [Shewanella sp. W3-18-1]
gi|120559102|gb|ABM25029.1| DNA repair protein RadC [Shewanella sp. W3-18-1]
Length = 160
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 4/33 (12%), Positives = 6/33 (18%)
Query: 112 IKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ T Q + FA
Sbjct: 35 NHEVFTSPQIVKDYLRLRMAAYEREVFAVLLLD 67
>gi|134298847|ref|YP_001112343.1| DNA repair protein RadC [Desulfotomaculum reducens MI-1]
gi|134051547|gb|ABO49518.1| DNA replication and repair protein RadC [Desulfotomaculum reducens
MI-1]
Length = 231
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 8/68 (11%), Positives = 20/68 (29%)
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
L IG +A L ++++ A S + + ++ + +
Sbjct: 71 SKEELMTYPGIGPSMAARLMAAFALTKKLASAGASENTVIRCPEDIFYLMKNEAKLLDKE 130
Query: 137 NFAYCFSI 144
F+
Sbjct: 131 YFSALLLN 138
>gi|146318727|ref|YP_001198439.1| putative DNA repair protein [Streptococcus suis 05ZYH33]
gi|145689533|gb|ABP90039.1| putative DNA repair protein [Streptococcus suis 05ZYH33]
Length = 49
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 6/37 (16%), Positives = 18/37 (48%)
Query: 25 LRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAK 61
R+R ++ G L+ E+L + + ++ +++
Sbjct: 13 PRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSQ 49
>gi|188990452|ref|YP_001902462.1| DNA repair protein radC homolog [Xanthomonas campestris pv.
campestris str. B100]
gi|167732212|emb|CAP50404.1| DNA repair protein radC homolog [Xanthomonas campestris pv.
campestris]
Length = 159
Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 4/44 (9%), Positives = 11/44 (25%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
A+ I++ + + + + F F
Sbjct: 23 AAATIMEQRLRRQGQIHSPEQAGSYLVARCAHLPHEVFGVLFLD 66
>gi|78048960|ref|YP_365135.1| RadC family DNA repair protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78037390|emb|CAJ25135.1| RadC family DNA repair protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 187
Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 5/44 (11%), Positives = 10/44 (22%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
A+ IL+ + + + F F
Sbjct: 51 AAATILEQRLQRQGKIHSPDQAGDYLISRCAHLPHEVFGVVFLD 94
>gi|288986959|ref|YP_003456922.1| DNA repair protein RadC [Allochromatium vinosum DSM 180]
gi|288898338|gb|ADC64172.1| DNA repair protein RadC [Allochromatium vinosum DSM 180]
Length = 167
Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 8/81 (9%), Positives = 17/81 (20%), Gaps = 6/81 (7%)
Query: 65 KRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
V + ++ + + E R+ + LT
Sbjct: 1 MSHPNPWRVLESDAQRRPTLSFTERTLVAEAIDCLERHYRVAQE------ALTSPDATRD 54
Query: 125 SVERHYPMKNANNFAYCFSIN 145
++ FA N
Sbjct: 55 YLKLRLYGLTYEVFAVLLLDN 75
>gi|269137403|ref|YP_003294103.1| DNA repair protein [Edwardsiella tarda EIB202]
gi|267983063|gb|ACY82892.1| DNA repair protein [Edwardsiella tarda EIB202]
Length = 147
Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 7/50 (14%), Positives = 18/50 (36%)
Query: 96 KLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+L+ ++++L+A + LT + ++ F N
Sbjct: 6 RLLIEQARKLLRATVRRGRALTSPDEVRDFLLFTLALRENEVFGVLLLDN 55
>gi|78046671|ref|YP_362846.1| RadC family DNA repair protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78035101|emb|CAJ22746.1| RadC family DNA repair protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 159
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 5/44 (11%), Positives = 10/44 (22%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
A+ IL+ + + + F F
Sbjct: 23 AAATILEQRLQRQGRIHSPDQAGDYLIARCAHLPHEVFGVVFLD 66
>gi|37680435|ref|NP_935044.1| DNA repair protein [Vibrio vulnificus YJ016]
gi|37199183|dbj|BAC95015.1| DNA repair protein [Vibrio vulnificus YJ016]
Length = 184
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 13/48 (27%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + + T Q + FA N
Sbjct: 46 VLEEAAEILEQRYVRGEAFTRTQNTADYLRCKLAGYEHEVFAVLLLDN 93
>gi|331005821|ref|ZP_08329177.1| DNA repair protein [gamma proteobacterium IMCC1989]
gi|330420360|gb|EGG94670.1| DNA repair protein [gamma proteobacterium IMCC1989]
Length = 169
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
++ N I + L ++ IL+A + ++T + K F
Sbjct: 20 EQHNGISESQILAW------AESILEARFKRSNYITSPSHTREYLSVTLADKEREVFCMI 73
Query: 142 FSI 144
+
Sbjct: 74 YLD 76
>gi|209917488|ref|YP_002291572.1| hypothetical protein ECSE_0297 [Escherichia coli SE11]
gi|209910747|dbj|BAG75821.1| hypothetical phage protein [Escherichia coli SE11]
Length = 180
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 8/91 (8%), Positives = 21/91 (23%), Gaps = 5/91 (5%)
Query: 57 KSIAKALLKRFATLGGVFGAPLHLL--QEINRIGKRVALELKLVSVASQRILKANWSIKK 114
+ A + L L + H + + ++ + + L+
Sbjct: 1 MNTALSPLSSQPELFPLAVMAQHDYLLTATSGLTPYAQRTIRRATNLLDKYLR---QPGI 57
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
T + + F + N
Sbjct: 58 SFTSSTAARDWLRLQLAGQEREVFMVLYLDN 88
>gi|153800936|ref|ZP_01955522.1| DNA repair protein [Vibrio cholerae MZO-3]
gi|124123527|gb|EAY42270.1| DNA repair protein [Vibrio cholerae MZO-3]
Length = 157
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT V FA N
Sbjct: 15 QENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGSYEREVFALLLLDN 66
>gi|328948862|ref|YP_004366199.1| DNA repair protein RadC [Treponema succinifaciens DSM 2489]
gi|328449186|gb|AEB14902.1| DNA repair protein RadC [Treponema succinifaciens DSM 2489]
Length = 223
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
R+ L G + E++ LIL + +S+A+ + K + + L++IN
Sbjct: 18 RELTLLNGISYPDDEELIMLILGKGTKNNPIESLAEKVTKTINSSNE--EELIPNLKKIN 75
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNF 138
+G+ AL + +R ++ + + + ++ HY + +F
Sbjct: 76 GMGESRALIIAAALELGRRRR---GILRSSINAPKDVIPFLQ-HYTLMPTEHF 124
>gi|21231072|ref|NP_636989.1| RadC family protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66768919|ref|YP_243681.1| RadC family protein [Xanthomonas campestris pv. campestris str.
8004]
gi|21112702|gb|AAM40913.1| RadC family protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574251|gb|AAY49661.1| RadC family protein [Xanthomonas campestris pv. campestris str.
8004]
Length = 159
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 5/44 (11%), Positives = 10/44 (22%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
A+ IL+ + + + F F
Sbjct: 23 AAATILEQRLQRQGRIHSPDQAGDYLVARCAHLPHEVFGVVFLD 66
>gi|188992506|ref|YP_001904516.1| DNA repair protein radC homolog [Xanthomonas campestris pv.
campestris str. B100]
gi|167734266|emb|CAP52476.1| DNA repair protein radC homolog [Xanthomonas campestris pv.
campestris]
Length = 159
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 12/45 (26%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
A+ IL+ + + + + F F N
Sbjct: 23 AAATILEQRLQRQGRIHSPDQAGSYLVARCAHLSHEIFGVVFLDN 67
>gi|146294605|ref|YP_001185029.1| DNA repair protein RadC [Shewanella putrefaciens CN-32]
gi|145566295|gb|ABP77230.1| DNA repair protein RadC [Shewanella putrefaciens CN-32]
Length = 168
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 7/49 (14%), Positives = 14/49 (28%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
++ ++ I+ + K T Q + FA N
Sbjct: 29 VILASAANIIAERYVKKDAYTNPQATKDFLTYKLGGYEREVFAVMLLDN 77
>gi|229512565|ref|ZP_04402036.1| DNA repair protein RadC [Vibrio cholerae TMA 21]
gi|229350458|gb|EEO15407.1| DNA repair protein RadC [Vibrio cholerae TMA 21]
Length = 157
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT V FA N
Sbjct: 15 QENEILEHAAEILANRYVRGDALTNPDATKEYVRCKLGSYEREVFALLLLDN 66
>gi|113970038|ref|YP_733831.1| DNA repair protein RadC [Shewanella sp. MR-4]
gi|113884722|gb|ABI38774.1| DNA repair protein RadC [Shewanella sp. MR-4]
Length = 164
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 14/51 (27%)
Query: 95 LKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + ++ I+ + K T Q + FA N
Sbjct: 23 AEAILASAANIIAERYVKKDAYTNPQATKDFLTYKLGGYEREVFAVMLLDN 73
>gi|258623772|ref|ZP_05718729.1| RadC-like protein [Vibrio mimicus VM603]
gi|258583895|gb|EEW08687.1| RadC-like protein [Vibrio mimicus VM603]
Length = 157
Score = 45.3 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT V FA N
Sbjct: 15 QENEILEHAAEILANRYVRGDALTNPDATKEYVRCKLGSYEREVFALLLLDN 66
>gi|15640534|ref|NP_230161.1| DNA repair protein RadC-related protein [Vibrio cholerae O1 biovar
El Tor str. N16961]
gi|153822183|ref|ZP_01974850.1| DNA repair protein RadC family protein [Vibrio cholerae B33]
gi|229509016|ref|ZP_04398504.1| DNA repair protein RadC [Vibrio cholerae B33]
gi|229519684|ref|ZP_04409127.1| DNA repair protein RadC [Vibrio cholerae RC9]
gi|229606200|ref|YP_002876848.1| DNA repair protein RadC [Vibrio cholerae MJ-1236]
gi|254850747|ref|ZP_05240097.1| DNA repair protein RadC family protein [Vibrio cholerae MO10]
gi|13431999|sp|Q9KUK8|Y510_VIBCH RecName: Full=UPF0758 protein VC_0510
gi|9654937|gb|AAF93680.1| DNA repair protein RadC-related protein [Vibrio cholerae O1 biovar
El Tor str. N16961]
gi|126520318|gb|EAZ77541.1| DNA repair protein RadC family protein [Vibrio cholerae B33]
gi|229344373|gb|EEO09348.1| DNA repair protein RadC [Vibrio cholerae RC9]
gi|229353941|gb|EEO18875.1| DNA repair protein RadC [Vibrio cholerae B33]
gi|229368855|gb|ACQ59278.1| DNA repair protein RadC [Vibrio cholerae MJ-1236]
gi|254846452|gb|EET24866.1| DNA repair protein RadC family protein [Vibrio cholerae MO10]
Length = 157
Score = 45.3 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT V FA N
Sbjct: 15 QENEILEHAAEILANRYVRGDALTNPDATKEYVRCKLGSYEREVFALLLLDN 66
>gi|270263658|ref|ZP_06191927.1| 'putative DNA repair protein; CP4-44 prophage' [Serratia odorifera
4Rx13]
gi|270042542|gb|EFA15637.1| 'putative DNA repair protein; CP4-44 prophage' [Serratia odorifera
4Rx13]
Length = 160
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L+ + T + F + N
Sbjct: 24 ALALLEQHLRQPGISFTSANAARDWLRLRMARLEREVFMVLYLDN 68
>gi|297580642|ref|ZP_06942568.1| DNA repair protein RadC family protein [Vibrio cholerae RC385]
gi|297535058|gb|EFH73893.1| DNA repair protein RadC family protein [Vibrio cholerae RC385]
Length = 157
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT V FA N
Sbjct: 15 QENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGSHEREVFALLLLDN 66
>gi|117920251|ref|YP_869443.1| DNA repair protein RadC [Shewanella sp. ANA-3]
gi|117612583|gb|ABK48037.1| DNA repair protein RadC [Shewanella sp. ANA-3]
Length = 168
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 14/51 (27%)
Query: 95 LKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ V ++ I+ + K T Q + FA N
Sbjct: 27 AEEVLASAANIIAERYVKKDAYTNPQATKDFLTYKLGGYEREVFAVMLLDN 77
>gi|71907853|ref|YP_285440.1| DNA repair protein RadC [Dechloromonas aromatica RCB]
gi|71847474|gb|AAZ46970.1| DNA repair protein RadC [Dechloromonas aromatica RCB]
Length = 193
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 9/91 (9%), Positives = 23/91 (25%), Gaps = 4/91 (4%)
Query: 58 SIAKALLK---RFATLGGVFGAPLHLLQEINRIGKRVAL-ELKLVSVASQRILKANWSIK 113
+ + LL +++ + + + V L + R L+A
Sbjct: 10 DLVRELLSPLVCASSINPLHVSDAVAQMGMLGTTDTVLAHRLGIARELLLRDLRAQMRSS 69
Query: 114 KFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ Q + + F +
Sbjct: 70 PLMISPQVLRDWLRLYCAGLEHEVFLALYLD 100
>gi|258626046|ref|ZP_05720901.1| Putative radC-like protein [Vibrio mimicus VM603]
gi|258581666|gb|EEW06560.1| Putative radC-like protein [Vibrio mimicus VM603]
Length = 157
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT V FA N
Sbjct: 15 QENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGSHEREVFALLLLDN 66
>gi|37678709|ref|NP_933318.1| DNA repair protein [Vibrio vulnificus YJ016]
gi|37197450|dbj|BAC93289.1| DNA repair protein [Vibrio vulnificus YJ016]
Length = 157
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT V FA N
Sbjct: 15 QENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGSHEREVFALLLLDN 66
>gi|297183085|gb|ADI19229.1| DNA repair proteins [uncultured delta proteobacterium HF0200_14D13]
Length = 619
Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 10/86 (11%), Positives = 20/86 (23%)
Query: 60 AKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPG 119
A L L + L LQ+ + +L+L+ + +
Sbjct: 442 ALEELGELGALKALDRNKLTELQQKVAADSELPTKLRLLKELCRHYAEKRLQPSTQYRSS 501
Query: 120 QPCLISVERHYPMKNANNFAYCFSIN 145
+ + F N
Sbjct: 502 SDIFAHLREQFREAAQEQFLVVLLDN 527
>gi|52425996|ref|YP_089133.1| RadC protein [Mannheimia succiniciproducens MBEL55E]
gi|52308048|gb|AAU38548.1| RadC protein [Mannheimia succiniciproducens MBEL55E]
Length = 111
Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 12/45 (26%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
++R L + I ++ + F F N
Sbjct: 1 MTKRYLLEELQQNQEFNSTDTARIYLQTALEQREREIFLVLFLDN 45
>gi|262191975|ref|ZP_06050141.1| DNA repair protein RadC [Vibrio cholerae CT 5369-93]
gi|262032150|gb|EEY50722.1| DNA repair protein RadC [Vibrio cholerae CT 5369-93]
gi|315178489|gb|ADT85403.1| DNA repair protein RadC-related protein [Vibrio furnissii NCTC
11218]
Length = 157
Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT V FA N
Sbjct: 15 QENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGSHEREVFALLLLDN 66
>gi|237756348|ref|ZP_04584898.1| DNA repair protein RadC [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691499|gb|EEP60557.1| DNA repair protein RadC [Sulfurihydrogenibium yellowstonense SS-5]
Length = 152
Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
+I IG+ AL++ + ++R+ + + K ++ ++ + + +
Sbjct: 1 KIKGIGEAKALQILAIIEIAKRM--DDHTEKIKISSVSDAFNYLKF-LSKETQEHMVALY 57
Query: 143 SI 144
Sbjct: 58 LN 59
>gi|217971586|ref|YP_002356337.1| DNA repair protein RadC [Shewanella baltica OS223]
gi|217496721|gb|ACK44914.1| DNA repair protein RadC [Shewanella baltica OS223]
Length = 163
Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 7/49 (14%), Positives = 13/49 (26%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ ++ I+ + K T Q + FA N
Sbjct: 24 AILASAANIIAERYVKKDAYTNPQATKDFLTYKLGGYEREVFAVMLLDN 72
>gi|83643512|ref|YP_431947.1| DNA repair protein [Hahella chejuensis KCTC 2396]
gi|83631555|gb|ABC27522.1| DNA repair protein [Hahella chejuensis KCTC 2396]
Length = 146
Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 4/31 (12%), Positives = 8/31 (25%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+T + ++ F F N
Sbjct: 24 VITSPELAYDFLKLKLAELQYEVFGVMFLDN 54
>gi|153948236|ref|YP_001399737.1| RadC family DNA repair protein [Yersinia pseudotuberculosis IP
31758]
gi|152959731|gb|ABS47192.1| DNA repair protein, RadC family [Yersinia pseudotuberculosis IP
31758]
Length = 162
Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
LT + ++ H + F F N
Sbjct: 34 HRPYTLTSPEAVKAWLQLHLRPQGRECFMVLFLDN 68
>gi|238756176|ref|ZP_04617495.1| DNA repair protein, RadC family [Yersinia ruckeri ATCC 29473]
gi|238705591|gb|EEP97989.1| DNA repair protein, RadC family [Yersinia ruckeri ATCC 29473]
Length = 157
Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 8/54 (14%), Positives = 17/54 (31%)
Query: 92 ALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +++S A + LT + ++ H + F F N
Sbjct: 10 FAQQQIISQALAILETQLRHRPYTLTSPEAVKAWLQLHLRPQGRECFMVLFLDN 63
>gi|222110476|ref|YP_002552740.1| DNA repair protein Radc [Acidovorax ebreus TPSY]
gi|221729920|gb|ACM32740.1| DNA repair protein RadC [Acidovorax ebreus TPSY]
Length = 168
Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 5/47 (10%), Positives = 12/47 (25%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ A+++++ T + FA F
Sbjct: 29 ILAAARQVIDQKNPRGTLFTSPALVKDYLRTKLASFEHEVFAALFLD 75
>gi|238798215|ref|ZP_04641701.1| DNA repair protein, RadC family [Yersinia mollaretii ATCC 43969]
gi|238717952|gb|EEQ09782.1| DNA repair protein, RadC family [Yersinia mollaretii ATCC 43969]
Length = 157
Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 8/54 (14%), Positives = 17/54 (31%)
Query: 92 ALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +++S A + LT + ++ H + F F N
Sbjct: 10 FAQQQIISQALAILETQLRHRPYTLTSPEAVKAWLQLHLRPQGQECFMVLFLDN 63
>gi|297581793|ref|ZP_06943714.1| DNA repair protein RadC family protein [Vibrio cholerae RC385]
gi|297533887|gb|EFH72727.1| DNA repair protein RadC family protein [Vibrio cholerae RC385]
Length = 157
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT V FA N
Sbjct: 15 QENEILEHAAEILANRYVRGDALTNPDATKEYVRCKLGSHEREVFALLLLDN 66
>gi|157961087|ref|YP_001501121.1| DNA repair protein RadC [Shewanella pealeana ATCC 700345]
gi|157846087|gb|ABV86586.1| DNA repair protein RadC [Shewanella pealeana ATCC 700345]
Length = 158
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 5/51 (9%), Positives = 11/51 (21%)
Query: 95 LKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + I+ + T + + FA N
Sbjct: 17 TSEILATAANIIAEKFVHNDAFTNPEATKQFLTYKMANYEREVFAVMMLDN 67
>gi|206578396|ref|YP_002240722.1| DNA repair protein, RadC family [Klebsiella pneumoniae 342]
gi|206567454|gb|ACI09230.1| DNA repair protein, RadC family [Klebsiella pneumoniae 342]
Length = 161
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 3/30 (10%), Positives = 6/30 (20%)
Query: 116 LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
T + + F + N
Sbjct: 40 FTSSTAARDWLRLQLAGQEREVFMVLYLNN 69
>gi|103487967|ref|YP_617528.1| DNA repair protein RadC [Sphingopyxis alaskensis RB2256]
gi|98978044|gb|ABF54195.1| DNA repair protein RadC [Sphingopyxis alaskensis RB2256]
Length = 354
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 10/78 (12%), Positives = 19/78 (24%)
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
TL + L V+ L A+ + L+A+ + L +
Sbjct: 50 HRTLARILVQSPETLARTLGKDSAVSALLCATQAAAIQSLRADLDDRGIDPANPKLLRYL 109
Query: 127 ERHYPMKNANNFAYCFSI 144
+ F
Sbjct: 110 KLSMGALPHETLRVLFLD 127
>gi|261210081|ref|ZP_05924379.1| DNA repair protein RadC [Vibrio sp. RC341]
gi|260840846|gb|EEX67388.1| DNA repair protein RadC [Vibrio sp. RC341]
Length = 157
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT V FA N
Sbjct: 15 QENEILEHAAEILANRYVRGDALTNPDATKEYVRCKLGSHEREVFALLLLDN 66
>gi|77459227|ref|YP_348734.1| DNA repair protein RadC [Pseudomonas fluorescens Pf0-1]
gi|77383230|gb|ABA74743.1| putative DNA repair protein [Pseudomonas fluorescens Pf0-1]
Length = 164
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 9/56 (16%), Positives = 19/56 (33%)
Query: 89 KRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
R+ E +L+ A + + ++ LT ++ H + F F
Sbjct: 16 DRIVQENQLIDEALHILDRRLFARGPILTSPDTVASYLKLHLAQQEHEVFGVIFLD 71
>gi|56475704|ref|YP_157293.1| RadC family DNA repair protein [Aromatoleum aromaticum EbN1]
gi|56311747|emb|CAI06392.1| DNA repair protein similar to radC family [Aromatoleum aromaticum
EbN1]
Length = 196
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 11/111 (9%), Positives = 22/111 (19%), Gaps = 15/111 (13%)
Query: 34 ENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVAL 93
+LA +LE A+ + + + R
Sbjct: 8 PTSLADAALLERFFG---------PEAEDVWESCGGSWS----RVVEFAREPRTP--AWD 52
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L QR + L + + + F +
Sbjct: 53 ALSSALEILQRSFAEQLAAGDVLDAPDVVKPFLRTFFAGRPYEVFVALYLN 103
>gi|327480970|gb|AEA84280.1| RadC family DNA repair protein [Pseudomonas stutzeri DSM 4166]
Length = 168
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 5/52 (9%), Positives = 14/52 (26%)
Query: 93 LELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + A+++++ T + + FA F
Sbjct: 24 ATAEQILDAARKVIDQKVQRGAAFTSSELVKEYLIAKLGGFEHEVFAALFLD 75
>gi|237730257|ref|ZP_04560738.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226905796|gb|EEH91714.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 158
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ R L+ + T + H F + N
Sbjct: 22 ALRALERHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDN 66
>gi|301644226|ref|ZP_07244233.1| DNA repair protein RadC family protein [Escherichia coli MS 146-1]
gi|301077423|gb|EFK92229.1| DNA repair protein RadC family protein [Escherichia coli MS 146-1]
Length = 161
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 3/30 (10%), Positives = 6/30 (20%)
Query: 116 LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
T + + F + N
Sbjct: 40 FTSSIAARDWLRLQLAGQEREVFMVLYLDN 69
>gi|330503705|ref|YP_004380574.1| DNA repair protein RadC [Pseudomonas mendocina NK-01]
gi|328917991|gb|AEB58822.1| DNA repair protein RadC [Pseudomonas mendocina NK-01]
Length = 63
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 4/37 (10%), Positives = 6/37 (16%)
Query: 108 ANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
T + + FA F
Sbjct: 4 QKVQRGAAFTSSELVKDYLIAKLGGFEHEVFAALFLD 40
>gi|114047276|ref|YP_737826.1| DNA repair protein RadC [Shewanella sp. MR-7]
gi|113888718|gb|ABI42769.1| DNA repair protein RadC [Shewanella sp. MR-7]
Length = 168
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V ++ I+ + K T Q + FA N
Sbjct: 29 EVLASAANIIAERYVKKDAYTNPQATKDFLTYKLGGYEREVFAVMLLDN 77
>gi|153833510|ref|ZP_01986177.1| DNA repair protein [Vibrio harveyi HY01]
gi|148870161|gb|EDL69102.1| DNA repair protein [Vibrio harveyi HY01]
Length = 157
Score = 44.2 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 13/52 (25%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT + V FA N
Sbjct: 15 QENEILEHAAEILATRYVRGDALTKPEATKEYVRCKLGNYEREVFALLLLDN 66
>gi|37678993|ref|NP_933602.1| DNA repair protein [Vibrio vulnificus YJ016]
gi|37197735|dbj|BAC93573.1| DNA repair protein [Vibrio vulnificus YJ016]
Length = 165
Score = 44.2 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT + FA N
Sbjct: 23 QENQILEHAAEILAHRYVRGNALTNPDATKEYIRCKLGAYEHEVFALLLLDN 74
>gi|260847121|ref|YP_003224899.1| putative DNA repair protein [Escherichia coli O103:H2 str. 12009]
gi|257762268|dbj|BAI33765.1| predicted DNA repair protein [Escherichia coli O103:H2 str. 12009]
Length = 180
Score = 44.2 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 4/31 (12%), Positives = 7/31 (22%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
T + H + F + N
Sbjct: 58 AFTSSTAARDWLRLHLARQEREVFMVLYLDN 88
>gi|84386431|ref|ZP_00989459.1| DNA repair protein [Vibrio splendidus 12B01]
gi|84378855|gb|EAP95710.1| DNA repair protein [Vibrio splendidus 12B01]
Length = 158
Score = 44.2 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 11/52 (21%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + L V FA N
Sbjct: 16 QENEILEHAAEILATRYVRGDALISPDATKEYVRCKLGSYEREVFALLLLDN 67
>gi|296269060|ref|YP_003651692.1| DNA repair protein RadC [Thermobispora bispora DSM 43833]
gi|296091847|gb|ADG87799.1| DNA repair protein RadC [Thermobispora bispora DSM 43833]
Length = 224
Score = 44.2 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 35/86 (40%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
+R R+R L G ALA E+L L+L + +A L+ TLG + + H L
Sbjct: 10 DRPRERLLTAGAAALADRELLALLLGSGGKGVNAVELASRLIAHCGTLGELSRSEPHRLL 69
Query: 83 EINRIGKRVALELKLVSVASQRILKA 108
+ IG A + +R
Sbjct: 70 AVPGIGPAKAARVAAAFQLMRRAQAE 95
>gi|300916723|ref|ZP_07133437.1| putative DNA repair protein RadC [Escherichia coli MS 115-1]
gi|300415989|gb|EFJ99299.1| putative DNA repair protein RadC [Escherichia coli MS 115-1]
Length = 158
Score = 44.2 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ R L+ + T + H F + N
Sbjct: 22 ALRALERHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDN 66
>gi|46202447|ref|ZP_00053202.2| COG2003: DNA repair proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 128
Score = 44.2 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 3/35 (8%), Positives = 5/35 (14%)
Query: 110 WSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++ L F F
Sbjct: 1 MLNNSVISSWDVLLDYCRTAMNTLPTEQFRLLFLD 35
>gi|170293827|gb|ACB12963.1| RadC [Aquabacterium sp. PL1F5]
Length = 198
Score = 44.2 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 3/50 (6%), Positives = 12/50 (24%)
Query: 95 LKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L + R +++ + + + + F +
Sbjct: 56 LSIARELLLRNMRSKMLEGPVMASPKVVKDWLSMYCAGLEHEVFLVLYLD 105
>gi|330503727|ref|YP_004380596.1| RadC-like protein [Pseudomonas mendocina NK-01]
gi|328918013|gb|AEB58844.1| RadC-like protein [Pseudomonas mendocina NK-01]
Length = 137
Score = 43.8 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 5/58 (8%), Positives = 16/58 (27%), Gaps = 3/58 (5%)
Query: 93 LELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI---NII 147
+ + A+++++ + + F+ F N+I
Sbjct: 24 ATAEQILDAARKVIDKKVQRGAAFKSSELVKDYLIAKLGGFEHEVFSALFLDAKHNLI 81
>gi|119384282|ref|YP_915338.1| DNA repair protein RadC [Paracoccus denitrificans PD1222]
gi|119374049|gb|ABL69642.1| DNA repair protein RadC [Paracoccus denitrificans PD1222]
Length = 162
Score = 43.8 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 93 LELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + V +++IL + + LT Q L + F +
Sbjct: 19 AQEQAVVYEARQILLRHLNQNPVLTSWQAVLDYCALTIRG-DVERFHVLYLD 69
>gi|238794329|ref|ZP_04637941.1| radC-like protein yeeS [Yersinia intermedia ATCC 29909]
gi|238726323|gb|EEQ17865.1| radC-like protein yeeS [Yersinia intermedia ATCC 29909]
Length = 159
Score = 43.8 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L + T Q + F + N
Sbjct: 23 ALSLLDQHLREPGVAFTSTQAARDWLRLKMGTLEREEFVVLYLNN 67
>gi|146306213|ref|YP_001186678.1| DNA repair protein RadC [Pseudomonas mendocina ymp]
gi|145574414|gb|ABP83946.1| DNA repair protein RadC [Pseudomonas mendocina ymp]
Length = 165
Score = 43.8 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+Q++ S + LT ++ FA
Sbjct: 29 MAQQLATQRLSKGRALTDPHKVREHLQVLLQDLPHEIFAVLLLD 72
>gi|145301518|ref|YP_001144357.1| DNA repair protein [Aeromonas salmonicida subsp. salmonicida A449]
gi|142856400|gb|ABO92609.1| DNA repair protein [Aeromonas salmonicida subsp. salmonicida A449]
Length = 296
Score = 43.8 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 5/66 (7%), Positives = 17/66 (25%), Gaps = 6/66 (9%)
Query: 86 RIGKRVALELKLVS------VASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
+ + + + I+ ++ L + + ++ + FA
Sbjct: 6 GLDPKNRIACMFTEREKRIIALAHSIIARRFTRLDSLNSPEMVVEYLKTRFATLEHETFA 65
Query: 140 YCFSIN 145
N
Sbjct: 66 MILLDN 71
>gi|260767607|ref|ZP_05876543.1| DNA repair protein RadC [Vibrio furnissii CIP 102972]
gi|260617507|gb|EEX42690.1| DNA repair protein RadC [Vibrio furnissii CIP 102972]
Length = 157
Score = 43.8 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 11/52 (21%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT V F N
Sbjct: 15 QENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGCYEREVFTLLLLDN 66
>gi|83649010|ref|YP_437445.1| DNA repair protein [Hahella chejuensis KCTC 2396]
gi|83637053|gb|ABC33020.1| DNA repair protein [Hahella chejuensis KCTC 2396]
Length = 207
Score = 43.8 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 7/45 (15%), Positives = 11/45 (24%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
++ IL + K + FA F N
Sbjct: 68 IAKHILDGRFFRGKAFCDPDATKYYLVLQLAEHEQEVFACMFLDN 112
>gi|134093935|ref|YP_001099010.1| putative DNA repair protein; putative CP4-6 prophage [Herminiimonas
arsenicoxydans]
gi|133737838|emb|CAL60883.1| putative DNA repair protein RadC [Herminiimonas arsenicoxydans]
Length = 175
Score = 43.8 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 5/35 (14%), Positives = 7/35 (20%)
Query: 110 WSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L Q + + FA F
Sbjct: 47 IKHGPKLASPQDVKDYLRLQLINEQREVFAVVFMD 81
>gi|238790651|ref|ZP_04634415.1| DNA repair protein, RadC family [Yersinia frederiksenii ATCC 33641]
gi|238721256|gb|EEQ12932.1| DNA repair protein, RadC family [Yersinia frederiksenii ATCC 33641]
Length = 157
Score = 43.8 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 7/54 (12%), Positives = 17/54 (31%)
Query: 92 ALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +++S A + LT + ++ H + F + N
Sbjct: 10 FAQQQIISQALAILETQLRHRPYTLTSPEAVKAWLQLHLRPQGQECFMVLYLDN 63
>gi|330808765|ref|YP_004353227.1| putative DNA repair protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376873|gb|AEA68223.1| putative DNA repair protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 163
Score = 43.4 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 3/34 (8%), Positives = 8/34 (23%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+L + + + F+ F
Sbjct: 37 KRGPYLESPEDVRQYLRLRLAGEIQEVFSALFLD 70
>gi|325918271|ref|ZP_08180413.1| DNA repair protein radc [Xanthomonas vesicatoria ATCC 35937]
gi|325535515|gb|EGD07369.1| DNA repair protein radc [Xanthomonas vesicatoria ATCC 35937]
Length = 159
Score = 43.4 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 5/44 (11%), Positives = 11/44 (25%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
A+ IL+ + + + + F F
Sbjct: 23 AAATILEQRLYRQGRIHSPDQAGDYLIARCAHLSHEVFGVVFLD 66
>gi|148975028|ref|ZP_01812008.1| DNA repair protein RadC [Vibrionales bacterium SWAT-3]
gi|145965537|gb|EDK30786.1| DNA repair protein RadC [Vibrionales bacterium SWAT-3]
Length = 128
Score = 43.4 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 110 WSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
S + LT + + + F F N
Sbjct: 34 ISEQTPLTSPEFVKSFCQTSLAACESEVFGVLFLDN 69
>gi|260877938|ref|ZP_05890293.1| DNA repair protein [Vibrio parahaemolyticus AN-5034]
gi|308089871|gb|EFO39566.1| DNA repair protein [Vibrio parahaemolyticus AN-5034]
Length = 157
Score = 43.4 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 7/55 (12%), Positives = 12/55 (21%)
Query: 91 VALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + L + V FA N
Sbjct: 12 KKHQENEILEHAAEILANRYVRGNALCNPEATKEYVRFKLASSEHEVFALLLLDN 66
>gi|260774791|ref|ZP_05883693.1| DNA repair protein RadC [Vibrio coralliilyticus ATCC BAA-450]
gi|260609216|gb|EEX35371.1| DNA repair protein RadC [Vibrio coralliilyticus ATCC BAA-450]
Length = 157
Score = 43.4 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 13/52 (25%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + LT + V FA N
Sbjct: 15 QENEILEHAAEILANRYVRGDALTKPEATKEYVRCKLGNYEREVFALLLLDN 66
>gi|193063615|ref|ZP_03044703.1| DNA repair protein RadC [Escherichia coli E22]
gi|192930602|gb|EDV83208.1| DNA repair protein RadC [Escherichia coli E22]
Length = 161
Score = 43.4 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 4/31 (12%), Positives = 7/31 (22%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
T + H + F + N
Sbjct: 39 AFTSSTAARDWLRLHLARQEREVFMVLYLDN 69
>gi|300919528|ref|ZP_07136026.1| DNA repair protein [Escherichia coli MS 115-1]
gi|300413422|gb|EFJ96732.1| DNA repair protein [Escherichia coli MS 115-1]
Length = 102
Score = 43.4 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 6/53 (11%), Positives = 13/53 (24%), Gaps = 1/53 (1%)
Query: 94 ELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + + R L + T + H F + N
Sbjct: 14 QDRCLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDN 66
>gi|330503754|ref|YP_004380623.1| DNA repair protein RadC [Pseudomonas mendocina NK-01]
gi|328918040|gb|AEB58871.1| DNA repair protein RadC [Pseudomonas mendocina NK-01]
Length = 168
Score = 43.4 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 4/52 (7%), Positives = 14/52 (26%)
Query: 93 LELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + A+++++ T + + F+ F
Sbjct: 24 ATAEQILDAARKVIDQKVQRGAAFTSSELVKEYLIAKLGGFEHEVFSALFLD 75
>gi|260427275|ref|ZP_05781254.1| DNA repair protein RadC [Citreicella sp. SE45]
gi|260421767|gb|EEX15018.1| DNA repair protein RadC [Citreicella sp. SE45]
Length = 139
Score = 43.4 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+++IL + + LT Q L + F +
Sbjct: 5 ARQILLRHLNQNPVLTSWQAVLDYCALSIRG-DVERFHVLYLD 46
>gi|213019903|ref|ZP_03335695.1| putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|212994512|gb|EEB55168.1| putative dna repair protein radc [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 91
Score = 43.4 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 30/74 (40%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRI 87
R L+ AL EI+E L + R + IAK L+ + +G + G + L+ I +
Sbjct: 11 RILESKGKALLDREIMETFLSAVHERPQAQEIAKNLVNTYTGVGRILGREMDDLKVIEGV 70
Query: 88 GKRVALELKLVSVA 101
+ V
Sbjct: 71 TDSAVAMIMCVKET 84
>gi|253723696|ref|YP_003023982.1| RadC DNA repair protein [Photobacterium damselae subsp. piscicida]
gi|251752760|dbj|BAH83633.1| RadC DNA repair protein [Photobacterium damselae subsp. piscicida]
Length = 156
Score = 43.4 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 4/44 (9%), Positives = 6/44 (13%)
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ I T + F N
Sbjct: 21 AAAIFAKKIKTCDAFTSPDLVKGFCQARLATSEREIFMLLILDN 64
>gi|225174937|ref|ZP_03728934.1| DNA repair protein RadC [Dethiobacter alkaliphilus AHT 1]
gi|225169577|gb|EEG78374.1| DNA repair protein RadC [Dethiobacter alkaliphilus AHT 1]
Length = 189
Score = 43.4 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 63 LLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
+ K + +L + A L + +G R A +LK V S+ +L +
Sbjct: 17 IAKEYPSLKQLSHATEKELLRVPGLGPRKAKQLKAVFDLSKALL-EPDDTSITIQSPADV 75
Query: 123 LISVERHYPMKNANNFAYCFSI 144
+ + + F
Sbjct: 76 FENFKY-LALHEEEYLVALFLN 96
>gi|254429018|ref|ZP_05042725.1| DNA repair protein RadC [Alcanivorax sp. DG881]
gi|196195187|gb|EDX90146.1| DNA repair protein RadC [Alcanivorax sp. DG881]
Length = 164
Score = 43.4 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ IL + ++ LT ++ + FA F N
Sbjct: 28 TAATILLDELTGREALTSPTDVAQFLQMALAQEKNEVFAAIFLNN 72
>gi|170021431|ref|YP_001726385.1| DNA repair protein RadC [Escherichia coli ATCC 8739]
gi|169756359|gb|ACA79058.1| DNA repair protein RadC [Escherichia coli ATCC 8739]
Length = 159
Score = 43.4 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 9/45 (20%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L+ T + F F N
Sbjct: 23 ALSLLECQLRETGASFTSSHAVRDWLRLQLASLEREEFTALFLDN 67
>gi|84386400|ref|ZP_00989428.1| DNA repair protein RadC-related protein [Vibrio splendidus 12B01]
gi|84378824|gb|EAP95679.1| DNA repair protein RadC-related protein [Vibrio splendidus 12B01]
Length = 157
Score = 43.4 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 12/52 (23%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + I + LT + V FA N
Sbjct: 15 QENEILEHAAEIFATRYVRGDALTKPEATKEYVRCKLGSYEREVFALLLLDN 66
>gi|225619798|ref|YP_002721055.1| putative DNA repair protein RadC [Brachyspira hyodysenteriae WA1]
gi|225214617|gb|ACN83351.1| putative DNA repair protein RadC [Brachyspira hyodysenteriae WA1]
Length = 233
Score = 43.4 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 32/106 (30%)
Query: 39 YYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLV 98
+IL I+ I +I + L F L + A L ++ + + +K +
Sbjct: 26 EKQILASIISNGISLDKANAIVEKLYYNFYNLHNIVNASEEELSKVKGLNSKKINLIKSI 85
Query: 99 SVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ L ++ I + + + F+
Sbjct: 86 PSILEYYLLSSLKIASPHIKKKDLINYLIIKLGKLKFETFSIICLD 131
>gi|134095055|ref|YP_001100130.1| putative DNA repair protein in putative prophage region (radC-like)
[Herminiimonas arsenicoxydans]
gi|133738958|emb|CAL62006.1| Putative DNA repair protein RadC-like [Herminiimonas
arsenicoxydans]
Length = 166
Score = 43.4 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 4/44 (9%), Positives = 12/44 (27%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++++ + + + LT + FA
Sbjct: 30 MAKQLSRKRLNKGRALTSPGDVKEHLRALLQDHPHEVFAILLLD 73
>gi|262191336|ref|ZP_06049528.1| DNA repair protein RadC [Vibrio cholerae CT 5369-93]
gi|262032791|gb|EEY51337.1| DNA repair protein RadC [Vibrio cholerae CT 5369-93]
Length = 157
Score = 43.4 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 11/52 (21%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + L V FA N
Sbjct: 15 QENEILEHAAEILATRYVRGDALINPDATKEYVRCKLGSYEREVFALLLLDN 66
>gi|153801495|ref|ZP_01956081.1| DNA repair protein RadC family protein [Vibrio cholerae MZO-3]
gi|124122986|gb|EAY41729.1| DNA repair protein RadC family protein [Vibrio cholerae MZO-3]
Length = 157
Score = 43.4 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 11/52 (21%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + L V FA N
Sbjct: 15 QENEILEHAAEILATRYVRGDALINPDATKEYVRCKLGSYEREVFALLLLDN 66
>gi|70608421|gb|AAZ04485.1| DNA repair protein RadC [Acetobacter aceti]
Length = 147
Score = 43.4 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 16/55 (29%)
Query: 91 VALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L LV + RI +A L Q + + F +
Sbjct: 1 MRVLLMLVRESGLRIQRARLQHSGILAEQQQLYAYLRAIMGPEKREQVRVLFLND 55
>gi|16128232|ref|NP_414781.1| CP4-6 prophage; predicted DNA repair protein [Escherichia coli str.
K-12 substr. MG1655]
gi|89107120|ref|AP_000900.1| predicted DNA repair protein [Escherichia coli str. K-12 substr.
W3110]
gi|170079872|ref|YP_001729192.1| CP4-6 prophage; DNA repair protein [Escherichia coli str. K-12
substr. DH10B]
gi|238899635|ref|YP_002925431.1| CP4-6 prophage; putative DNA repair protein [Escherichia coli
BW2952]
gi|3025218|sp|Q47685|YKFG_ECOLI RecName: Full=UPF0758 protein ykfG
gi|1552815|gb|AAB08667.1| similar to E. coli ORF_o160, also similar to radC [Escherichia
coli]
gi|2367100|gb|AAC73350.1| CP4-6 prophage; predicted DNA repair protein [Escherichia coli str.
K-12 substr. MG1655]
gi|4902982|dbj|BAA77916.1| predicted DNA repair protein [Escherichia coli str. K12 substr.
W3110]
gi|169887707|gb|ACB01414.1| CP4-6 prophage; predicted DNA repair protein [Escherichia coli str.
K-12 substr. DH10B]
gi|238860643|gb|ACR62641.1| CP4-6 prophage; predicted DNA repair protein [Escherichia coli
BW2952]
gi|260450557|gb|ACX40979.1| DNA repair protein RadC [Escherichia coli DH1]
gi|315134932|dbj|BAJ42091.1| CP4-6 prophage; putative DNA repair protein [Escherichia coli DH1]
Length = 158
Score = 43.4 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ R L + T + H F + N
Sbjct: 22 ALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDN 66
>gi|238755011|ref|ZP_04616359.1| DNA repair protein RadC [Yersinia ruckeri ATCC 29473]
gi|238706715|gb|EEP99084.1| DNA repair protein RadC [Yersinia ruckeri ATCC 29473]
Length = 159
Score = 43.0 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 4/30 (13%), Positives = 5/30 (16%)
Query: 116 LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
T + F F N
Sbjct: 38 FTSTHATRDWLRLKMAGLEREMFMVLFLDN 67
>gi|289661519|ref|ZP_06483100.1| DNA repair protein RadC [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 156
Score = 43.0 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 12/45 (26%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
A++ ++A + + F+ F +
Sbjct: 20 AARFAIEAKAKRGQKFSRPSEVSEYFAIKLGGLEREVFSVIFLDH 64
>gi|217969374|ref|YP_002354608.1| DNA repair protein RadC [Thauera sp. MZ1T]
gi|217506701|gb|ACK53712.1| DNA repair protein RadC [Thauera sp. MZ1T]
Length = 164
Score = 43.0 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 5/35 (14%), Positives = 7/35 (20%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
L + + FA F N
Sbjct: 38 KAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDN 72
>gi|124267582|ref|YP_001021586.1| DNA repair protein [Methylibium petroleiphilum PM1]
gi|124260357|gb|ABM95351.1| DNA repair protein [Methylibium petroleiphilum PM1]
Length = 164
Score = 43.0 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 5/35 (14%), Positives = 7/35 (20%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
L + + FA F N
Sbjct: 38 KAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDN 72
>gi|154244743|ref|YP_001415701.1| DNA repair protein RadC [Xanthobacter autotrophicus Py2]
gi|154158828|gb|ABS66044.1| DNA repair protein RadC [Xanthobacter autotrophicus Py2]
Length = 128
Score = 43.0 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 93 LELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + V +++IL + + L+ Q L F +
Sbjct: 19 AQEQAVVYEARQILLRHLNQNPVLSSWQAVLDYCALTIRG-EVERFHVLYLD 69
>gi|237807914|ref|YP_002892354.1| DNA repair protein RadC [Tolumonas auensis DSM 9187]
gi|237500175|gb|ACQ92768.1| DNA repair protein RadC [Tolumonas auensis DSM 9187]
Length = 165
Score = 43.0 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 13/45 (28%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
++R+ K + + I ++ F F N
Sbjct: 29 MARRLAKNRLAKGCSIERPSSAFIYLQALMGNYENEVFGSLFLDN 73
>gi|239948406|ref|ZP_04700159.1| DNA repair protein RadC [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922682|gb|EER22706.1| DNA repair protein RadC [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 48
Score = 43.0 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 106 LKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI--NII 147
+K K + + ++ + F F NI+
Sbjct: 1 MKQKIINKNIIASWSSLIDYLKVNMGNMRFEQFRILFLNKKNIL 44
>gi|120609194|ref|YP_968872.1| DNA repair protein RadC [Acidovorax citrulli AAC00-1]
gi|120587658|gb|ABM31098.1| DNA repair protein RadC [Acidovorax citrulli AAC00-1]
Length = 167
Score = 43.0 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 3/57 (5%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 89 KRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ ++ + + +L+ + ++ + + + F F
Sbjct: 18 PALTVQESRLVHRALHVLEQRMFHREAAISTPRELYDYLRLKLAGELHEVFGVVFLD 74
>gi|121594529|ref|YP_986425.1| DNA repair protein RadC [Acidovorax sp. JS42]
gi|120606609|gb|ABM42349.1| DNA repair protein RadC [Acidovorax sp. JS42]
Length = 164
Score = 43.0 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 5/35 (14%), Positives = 7/35 (20%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
L + + FA F N
Sbjct: 38 KAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDN 72
>gi|84390134|ref|ZP_00991396.1| DNA repair protein [Vibrio splendidus 12B01]
gi|84376788|gb|EAP93663.1| DNA repair protein [Vibrio splendidus 12B01]
Length = 157
Score = 43.0 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 11/52 (21%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + L V FA N
Sbjct: 15 QENEILEHAAEILATRYVRGDALISPNATKEYVRCKLGSYEREVFALLLLDN 66
>gi|313157187|gb|EFR56617.1| DNA repair protein RadC [Alistipes sp. HGB5]
Length = 211
Score = 43.0 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 6/117 (5%)
Query: 27 DRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINR 86
D+ +G +AL E+L L+ + +++ L +L V L+ I
Sbjct: 6 DKMAARGVDALTDRELLSLL---TEDEQSAEAL---LAAYGGSLARVGSEEAARLRMIGG 59
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+G R A L + +RI A + ++ + + +
Sbjct: 60 LGLRRARMLLAAAELGRRITAARAAETDVVSSSDDVVRLFRPQLETLSHEECWAVYL 116
>gi|312961083|ref|ZP_07775588.1| DNA repair protein RadC [Pseudomonas fluorescens WH6]
gi|311284741|gb|EFQ63317.1| DNA repair protein RadC [Pseudomonas fluorescens WH6]
Length = 164
Score = 43.0 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 89 KRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
R+ E +++ A + + ++ LT ++ H + F F
Sbjct: 16 DRIVQENQVIDEALHILDRRLFARGPNLTSPDAVASYLKLHLVQQEHEVFGVIFLD 71
>gi|330824402|ref|YP_004387705.1| DNA repair protein RadC [Alicycliphilus denitrificans K601]
gi|329309774|gb|AEB84189.1| DNA repair protein RadC [Alicycliphilus denitrificans K601]
Length = 164
Score = 43.0 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 5/35 (14%), Positives = 7/35 (20%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
L + + FA F N
Sbjct: 38 KAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDN 72
>gi|254198406|ref|ZP_04904828.1| DNA repair protein [Burkholderia pseudomallei S13]
gi|169655147|gb|EDS87840.1| DNA repair protein [Burkholderia pseudomallei S13]
Length = 165
Score = 43.0 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
LT Q + + ++ F F
Sbjct: 39 QRGPALTSPQNAIDYLRLTMTREDREVFTVIFLD 72
>gi|120597983|ref|YP_962557.1| DNA repair protein RadC [Shewanella sp. W3-18-1]
gi|120558076|gb|ABM24003.1| DNA repair protein RadC [Shewanella sp. W3-18-1]
Length = 165
Score = 42.6 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 3/48 (6%), Positives = 12/48 (25%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + ++ + S + + ++ F F
Sbjct: 25 DILDMALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLD 72
>gi|56476855|ref|YP_158444.1| RadC family DNA repair protein [Aromatoleum aromaticum EbN1]
gi|56312898|emb|CAI07543.1| DNA repair protein similar to radC-family [Aromatoleum aromaticum
EbN1]
Length = 164
Score = 42.6 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 5/35 (14%), Positives = 7/35 (20%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
L + + FA F N
Sbjct: 38 KAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDN 72
>gi|23014168|ref|ZP_00054000.1| COG2003: DNA repair proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 72
Score = 42.6 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 7 SKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTK 57
+PS ++ GH RLR RFL AL YE+LEL+L IP++DTK
Sbjct: 6 GASPSTGQTAEHKGHRERLRSRFLDA-PEALTDYELLELLLGAAIPQRDTK 55
>gi|152983064|ref|YP_001352677.1| DNA repair protein RadC [Janthinobacterium sp. Marseille]
gi|151283141|gb|ABR91551.1| DNA repair protein RadC [Janthinobacterium sp. Marseille]
Length = 190
Score = 42.6 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 5/35 (14%), Positives = 8/35 (22%)
Query: 110 WSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
LT + + + FA F
Sbjct: 62 IKHGPKLTSPKDVKDYLRLQLLNEKREVFAVVFMD 96
>gi|238796699|ref|ZP_04640205.1| DNA repair protein RadC [Yersinia mollaretii ATCC 43969]
gi|238719430|gb|EEQ11240.1| DNA repair protein RadC [Yersinia mollaretii ATCC 43969]
Length = 161
Score = 42.6 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L+ + T + F + N
Sbjct: 23 ALSLLEKHLREPGALFTSTNTARDWLRLQLAGLEREVFIVLYLDN 67
>gi|197286286|ref|YP_002152158.1| plasmid-related DNA repair protein [Proteus mirabilis HI4320]
gi|194683773|emb|CAR44822.1| putative plasmid-related DNA repair protein [Proteus mirabilis
HI4320]
Length = 165
Score = 42.6 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 3/48 (6%), Positives = 12/48 (25%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + ++ + S + + ++ F F
Sbjct: 25 DILDMALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLD 72
>gi|262151185|ref|ZP_06028323.1| DNA repair protein RadC [Vibrio cholerae INDRE 91/1]
gi|220897838|dbj|BAH11100.1| DNA repair protein RadC-related protein [Vibrio cholerae O1 biovar
El tor]
gi|262031016|gb|EEY49642.1| DNA repair protein RadC [Vibrio cholerae INDRE 91/1]
Length = 157
Score = 42.6 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 11/52 (21%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + IL + L V FA N
Sbjct: 15 QENEILEHAAEILATRYVRGDALINPDATKEYVRCKLGSHEREVFALLLLDN 66
>gi|253991430|ref|YP_003042786.1| hypothetical protein PAU_03957 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782880|emb|CAQ86045.1| similar putative radc-like protein ykfg of escherichia coli
[Photorhabdus asymbiotica]
Length = 156
Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 11/43 (25%)
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + K + T ++ + F + N
Sbjct: 23 RLLEKYQRQPSEPFTSTSLTKTWLQLQMAHQEREVFIVLYLDN 65
>gi|20095187|gb|AAM08053.1| hypothetical protein [Providencia rettgeri]
Length = 165
Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 3/48 (6%), Positives = 12/48 (25%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + ++ + S + + ++ F F
Sbjct: 25 DILDMALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLD 72
>gi|254850972|ref|ZP_05240322.1| DNA repair protein [Vibrio cholerae MO10]
gi|21885298|gb|AAL59704.1| putative DNA repair radC [Vibrio cholerae]
gi|254846677|gb|EET25091.1| DNA repair protein [Vibrio cholerae MO10]
gi|259156323|gb|ACV96269.1| DNA repair protein RadC [Vibrio cholerae Ind4]
gi|259156536|gb|ACV96480.1| DNA repair protein RadC [Vibrio cholerae Mex1]
Length = 165
Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 3/48 (6%), Positives = 12/48 (25%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + ++ + S + + ++ F F
Sbjct: 25 DILDMALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLD 72
>gi|167832541|gb|ACA01849.1| DNA repair protein RadC [Vibrio cholerae]
Length = 169
Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + + + + FA F N
Sbjct: 31 VLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDN 78
>gi|121727688|ref|ZP_01680783.1| DNA repair protein RadC, putative [Vibrio cholerae V52]
gi|298498145|ref|ZP_07007952.1| DNA repair protein [Vibrio cholerae MAK 757]
gi|121629985|gb|EAX62393.1| DNA repair protein RadC, putative [Vibrio cholerae V52]
gi|297542478|gb|EFH78528.1| DNA repair protein [Vibrio cholerae MAK 757]
Length = 169
Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + + + + FA F N
Sbjct: 31 VLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDN 78
>gi|294140110|ref|YP_003556088.1| DNA repair protein, RadC family [Shewanella violacea DSS12]
gi|293326579|dbj|BAJ01310.1| DNA repair protein, RadC family [Shewanella violacea DSS12]
Length = 158
Score = 42.6 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 4/47 (8%), Positives = 11/47 (23%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ ++ I+ + + T Q + F
Sbjct: 20 ILESAANIIAEKLNHQDVYTDPQTTKDFLTYKLGGYEREVFGVMMLN 66
>gi|307313278|ref|ZP_07592903.1| DNA repair protein RadC [Escherichia coli W]
gi|306906961|gb|EFN37470.1| DNA repair protein RadC [Escherichia coli W]
gi|315062961|gb|ADT77288.1| conserved hypothetical protein [Escherichia coli W]
gi|323376447|gb|ADX48715.1| DNA repair protein RadC [Escherichia coli KO11]
Length = 156
Score = 42.3 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + K + T ++ F + N
Sbjct: 23 RLLEKYQRQPSESFTSASLTKTWLQLQMAHLEREVFIVMYLDN 65
>gi|238750954|ref|ZP_04612451.1| radC-like protein yeeS [Yersinia rohdei ATCC 43380]
gi|238710868|gb|EEQ03089.1| radC-like protein yeeS [Yersinia rohdei ATCC 43380]
Length = 159
Score = 42.3 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIK-KFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L+ + T Q + F + N
Sbjct: 23 ALVLLEQHLREPGMAFTSTQVTRDWLRLKMGTLEREEFVVLYLNN 67
>gi|153802336|ref|ZP_01956922.1| DNA repair protein [Vibrio cholerae MZO-3]
gi|124122109|gb|EAY40852.1| DNA repair protein [Vibrio cholerae MZO-3]
gi|172051601|emb|CAQ34996.1| hypothetical protein [Photobacterium damselae subsp. piscicida]
gi|259156591|gb|ACV96534.1| DNA repair protein RadC [Vibrio fluvialis Ind1]
Length = 165
Score = 42.3 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 3/48 (6%), Positives = 12/48 (25%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + ++ + S + + ++ F F
Sbjct: 25 DILDMALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLD 72
>gi|229515195|ref|ZP_04404655.1| DNA repair protein RadC [Vibrio cholerae TMA 21]
gi|229347900|gb|EEO12859.1| DNA repair protein RadC [Vibrio cholerae TMA 21]
Length = 158
Score = 42.3 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + + + + FA F N
Sbjct: 20 VLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDN 67
>gi|59714363|ref|YP_207137.1| DNA repair protein RadC [Vibrio fischeri ES114]
gi|59482640|gb|AAW88249.1| DNA repair protein RadC [Vibrio fischeri ES114]
Length = 165
Score = 42.3 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 7/50 (14%), Positives = 13/50 (26%)
Query: 96 KLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
K++ + I++ LT + FA N
Sbjct: 24 KMILAEAASIIEVKIRNTSALTSPDLAAELCVNRLVHQEREVFAILMLDN 73
>gi|300825335|ref|ZP_07105415.1| putative DNA repair protein RadC [Escherichia coli MS 119-7]
gi|300522198|gb|EFK43267.1| putative DNA repair protein RadC [Escherichia coli MS 119-7]
Length = 158
Score = 42.3 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFA 139
+Q+I+ + + + + + + L + T + H F
Sbjct: 1 MQQISFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILHMAGLEREEFR 60
Query: 140 YCFSIN 145
+ N
Sbjct: 61 VLYLNN 66
>gi|323971984|gb|EGB67205.1| DNA repair protein RadC [Escherichia coli TA007]
Length = 158
Score = 42.3 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFA 139
+Q+I+ + + + + + + L + T + H F
Sbjct: 1 MQQISFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILHMAGLEREEFR 60
Query: 140 YCFSIN 145
+ N
Sbjct: 61 VLYLNN 66
>gi|229520275|ref|ZP_04409701.1| DNA repair protein RadC [Vibrio cholerae TM 11079-80]
gi|229342641|gb|EEO07633.1| DNA repair protein RadC [Vibrio cholerae TM 11079-80]
Length = 158
Score = 42.3 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + + + + FA F N
Sbjct: 20 VLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDN 67
>gi|296125781|ref|YP_003633033.1| DNA repair protein RadC [Brachyspira murdochii DSM 12563]
gi|296017597|gb|ADG70834.1| DNA repair protein RadC [Brachyspira murdochii DSM 12563]
Length = 227
Score = 42.3 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 32/111 (28%)
Query: 34 ENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVAL 93
+ + +IL I+ I + +I L F L + A L + + +
Sbjct: 15 ADLVDEKQILASIISNGISLERANTIVDKLYYSFYNLYNIVNASDKELLRVKGLNDKKIK 74
Query: 94 ELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+K + + L ++ + + + F+
Sbjct: 75 LIKSIPSILEYYLLSSLKADTPNFKKRDLINYLIIKLGKLKFETFSIVCLD 125
>gi|15641789|ref|NP_231421.1| DNA repair protein RadC, putative [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121585864|ref|ZP_01675658.1| DNA repair protein RadC, putative [Vibrio cholerae 2740-80]
gi|147674352|ref|YP_001217326.1| putative DNA repair protein RadC [Vibrio cholerae O395]
gi|153817804|ref|ZP_01970471.1| DNA repair protein RadC, putative [Vibrio cholerae NCTC 8457]
gi|153821150|ref|ZP_01973817.1| DNA repair protein RadC, putative [Vibrio cholerae B33]
gi|153828539|ref|ZP_01981206.1| putative DNA repair protein RadC [Vibrio cholerae 623-39]
gi|227081931|ref|YP_002810482.1| putative DNA repair protein RadC [Vibrio cholerae M66-2]
gi|229508112|ref|ZP_04397617.1| DNA repair protein RadC [Vibrio cholerae BX 330286]
gi|229511649|ref|ZP_04401128.1| DNA repair protein RadC [Vibrio cholerae B33]
gi|229518788|ref|ZP_04408231.1| DNA repair protein RadC [Vibrio cholerae RC9]
gi|229607673|ref|YP_002878321.1| DNA repair protein RadC [Vibrio cholerae MJ-1236]
gi|255744800|ref|ZP_05418750.1| DNA repair protein RadC [Vibrio cholera CIRS 101]
gi|262161917|ref|ZP_06030935.1| DNA repair protein RadC [Vibrio cholerae INDRE 91/1]
gi|262169785|ref|ZP_06037476.1| DNA repair protein RadC [Vibrio cholerae RC27]
gi|13432022|sp|Q9KR57|Y1786_VIBCH RecName: Full=UPF0758 protein VC_1786
gi|9656311|gb|AAF94935.1| DNA repair protein RadC, putative [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121550002|gb|EAX60020.1| DNA repair protein RadC, putative [Vibrio cholerae 2740-80]
gi|126511624|gb|EAZ74218.1| DNA repair protein RadC, putative [Vibrio cholerae NCTC 8457]
gi|126521346|gb|EAZ78569.1| DNA repair protein RadC, putative [Vibrio cholerae B33]
gi|146316235|gb|ABQ20774.1| putative DNA repair protein RadC [Vibrio cholerae O395]
gi|148875934|gb|EDL74069.1| putative DNA repair protein RadC [Vibrio cholerae 623-39]
gi|227009819|gb|ACP06031.1| putative DNA repair protein RadC [Vibrio cholerae M66-2]
gi|227013686|gb|ACP09896.1| putative DNA repair protein RadC [Vibrio cholerae O395]
gi|229343477|gb|EEO08452.1| DNA repair protein RadC [Vibrio cholerae RC9]
gi|229351614|gb|EEO16555.1| DNA repair protein RadC [Vibrio cholerae B33]
gi|229355617|gb|EEO20538.1| DNA repair protein RadC [Vibrio cholerae BX 330286]
gi|229370328|gb|ACQ60751.1| DNA repair protein RadC [Vibrio cholerae MJ-1236]
gi|255737271|gb|EET92666.1| DNA repair protein RadC [Vibrio cholera CIRS 101]
gi|262022019|gb|EEY40729.1| DNA repair protein RadC [Vibrio cholerae RC27]
gi|262028649|gb|EEY47304.1| DNA repair protein RadC [Vibrio cholerae INDRE 91/1]
Length = 158
Score = 42.3 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + + + + FA F N
Sbjct: 20 VLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDN 67
>gi|91228537|ref|ZP_01262458.1| DNA repair protein RadC [Vibrio alginolyticus 12G01]
gi|91187913|gb|EAS74224.1| DNA repair protein RadC [Vibrio alginolyticus 12G01]
Length = 155
Score = 42.3 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 4/34 (11%), Positives = 6/34 (17%)
Query: 112 IKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + FA F N
Sbjct: 31 RGDQYCNPEATKTYLSCKLKHHEREVFAVMFLDN 64
>gi|258592755|emb|CBE69064.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
Length = 96
Score = 42.3 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 19 IGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGV 73
GH RLRDRF ++ + +LEL+L IP+KD + +AK LL + +L +
Sbjct: 7 TGHRQRLRDRFASGDQSFRSEGSLLELLLTYTIPQKDVRPLAKHLLSEYGSLSSL 61
>gi|78047921|ref|YP_364096.1| RadC family DNA repair protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036351|emb|CAJ24042.1| RadC family DNA repair protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 164
Score = 42.3 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 8/65 (12%), Positives = 17/65 (26%)
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
R + +++ A + + + FL + + FA
Sbjct: 8 SCVEPRFAPASQSDDRIIRQAIALLEQRIFKKGPFLDGPTAVKDYLRLKLVAEPNEIFAV 67
Query: 141 CFSIN 145
F N
Sbjct: 68 VFLNN 72
>gi|88707202|ref|ZP_01104892.1| DNA repair protein RadC [Congregibacter litoralis KT71]
gi|88698545|gb|EAQ95674.1| DNA repair protein RadC [Congregibacter litoralis KT71]
Length = 170
Score = 42.3 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 9/73 (12%), Positives = 17/73 (23%), Gaps = 2/73 (2%)
Query: 74 FGAPLHLLQEINRI--GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYP 131
AP + + G E V + +L + L + +
Sbjct: 5 KQAPKASSDRFSGLKTGALTEEEKASVINLALSVLALRHRRGRALNNPRNTQEYLRIKLA 64
Query: 132 MKNANNFAYCFSI 144
+ F F
Sbjct: 65 DRKHEVFGTLFLD 77
>gi|218702486|ref|YP_002410115.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
IAI39]
gi|218372472|emb|CAR20348.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
IAI39]
Length = 163
Score = 41.9 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 5/71 (7%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKN 134
+Q+++ + + + + + + L + T + + +
Sbjct: 1 MERSTMQQLSFLPVAMTPGERSLIQRALKTLNRHLHEPGVAFTSTRAAREWLILNMAGLE 60
Query: 135 ANNFAYCFSIN 145
F + N
Sbjct: 61 REEFRVLYLNN 71
>gi|254430046|ref|ZP_05043753.1| DNA repair protein RadC [Alcanivorax sp. DG881]
gi|196196215|gb|EDX91174.1| DNA repair protein RadC [Alcanivorax sp. DG881]
Length = 164
Score = 41.9 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ IL + ++ LT ++ + FA F N
Sbjct: 28 TAAAILLDELTDREALTAPTDVAQFLQLALAQEKNEVFAAIFLNN 72
>gi|85712366|ref|ZP_01043416.1| DNA repair protein RadC [Idiomarina baltica OS145]
gi|85693809|gb|EAQ31757.1| DNA repair protein RadC [Idiomarina baltica OS145]
Length = 157
Score = 41.9 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 5/43 (11%), Positives = 11/43 (25%)
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ IL+ + + T + + FA
Sbjct: 23 ASEILETKFLKGEGFTSPSAAKDFLRYKLAHQKREVFAVMLMD 65
>gi|238791279|ref|ZP_04634918.1| DNA repair protein [Yersinia intermedia ATCC 29909]
gi|238729412|gb|EEQ20927.1| DNA repair protein [Yersinia intermedia ATCC 29909]
Length = 152
Score = 41.9 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 4/44 (9%), Positives = 13/44 (29%)
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+Q I++ + + + ++ F+ N
Sbjct: 17 AQSIIENRYIRGDKMFSTEAVREYLKFKLAPLEHEVFSVLLLDN 60
>gi|194426265|ref|ZP_03058820.1| DNA repair protein, RadC family [Escherichia coli B171]
gi|194415573|gb|EDX31840.1| DNA repair protein, RadC family [Escherichia coli B171]
gi|323161557|gb|EFZ47445.1| DNA repair protein RadC family protein [Escherichia coli E128010]
Length = 158
Score = 41.9 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 5/66 (7%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFA 139
+Q+++ + + + + + + L + T + + + F
Sbjct: 1 MQQLSFLPVAMTPGERSLIQRALKTLNRHLHEPGVAFTSTRAAREWLILNMAGLEREEFR 60
Query: 140 YCFSIN 145
+ N
Sbjct: 61 VLYLNN 66
>gi|153822298|ref|ZP_01974965.1| DNA repair protein [Vibrio cholerae B33]
gi|229509083|ref|ZP_04398570.1| DNA repair protein RadC [Vibrio cholerae B33]
gi|229608755|ref|YP_002879403.1| DNA repair protein RadC [Vibrio cholerae MJ-1236]
gi|255743769|ref|ZP_05417727.1| DNA repair protein RadC [Vibrio cholera CIRS 101]
gi|126520194|gb|EAZ77417.1| DNA repair protein [Vibrio cholerae B33]
gi|229353840|gb|EEO18775.1| DNA repair protein RadC [Vibrio cholerae B33]
gi|229371410|gb|ACQ61833.1| DNA repair protein RadC [Vibrio cholerae MJ-1236]
gi|255738630|gb|EET94017.1| DNA repair protein RadC [Vibrio cholera CIRS 101]
gi|259156144|gb|ACV96092.1| DNA repair protein RadC [Providencia alcalifaciens Ban1]
gi|259156276|gb|ACV96223.1| DNA repair protein RadC [Vibrio cholerae Ban5]
gi|259156401|gb|ACV96346.1| DNA repair protein RadC [Vibrio cholerae Ind5]
Length = 165
Score = 41.9 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 3/48 (6%), Positives = 12/48 (25%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + ++ + S + + ++ F F
Sbjct: 25 DILDLALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLD 72
>gi|26989216|ref|NP_744641.1| RadC family protein [Pseudomonas putida KT2440]
gi|24984058|gb|AAN68105.1|AE016442_6 RadC family protein [Pseudomonas putida KT2440]
Length = 182
Score = 41.9 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 4/44 (9%), Positives = 12/44 (27%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++++ + LT + ++ FA
Sbjct: 29 MARQLANLRLRRGRALTSPKEVFGHLQALLGDYEHEVFALLLLD 72
>gi|323157677|gb|EFZ43783.1| DNA repair RadC family protein [Escherichia coli EPECa14]
Length = 253
Score = 41.9 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|110642215|ref|YP_669945.1| putative radC-like protein YeeS [Escherichia coli 536]
gi|110343807|gb|ABG70044.1| putative radC-like protein YeeS [Escherichia coli 536]
Length = 158
Score = 41.9 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|254692435|emb|CAR48078.1| hypothetical protein [Escherichia coli]
Length = 148
Score = 41.9 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 12 ALKTLNRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 56
>gi|238762714|ref|ZP_04623683.1| DNA repair protein RadC [Yersinia kristensenii ATCC 33638]
gi|238699019|gb|EEP91767.1| DNA repair protein RadC [Yersinia kristensenii ATCC 33638]
Length = 156
Score = 41.5 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + K + T ++ F + N
Sbjct: 23 RLLEKYQRQPSESFTSTSLTKTWLQLQMAHLEREVFIVMYLDN 65
>gi|253689260|ref|YP_003018450.1| DNA repair protein RadC [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251755838|gb|ACT13914.1| DNA repair protein RadC [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 157
Score = 41.5 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 2/35 (5%), Positives = 6/35 (17%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + F + N
Sbjct: 31 KNARQFKTSEDTKSWLMLELSNLEREVFMVLYLDN 65
>gi|300824031|ref|ZP_07104152.1| putative DNA repair protein RadC [Escherichia coli MS 119-7]
gi|300523421|gb|EFK44490.1| putative DNA repair protein RadC [Escherichia coli MS 119-7]
Length = 158
Score = 41.5 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 7/58 (12%), Positives = 15/58 (25%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
G+ E L+ A + + + T + + F + N
Sbjct: 9 GEMTTRERSLIQRALKALDRHLHEPGVVFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|296104052|ref|YP_003614198.1| putative DNA repair protein [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058511|gb|ADF63249.1| putative DNA repair protein [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 158
Score = 41.5 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ R L + T + H F + N
Sbjct: 22 ALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREAFRVLYLDN 66
>gi|88706890|ref|ZP_01104589.1| DNA repair protein RadC [Congregibacter litoralis KT71]
gi|88698812|gb|EAQ95932.1| DNA repair protein RadC [Congregibacter litoralis KT71]
Length = 171
Score = 41.5 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 5/50 (10%), Positives = 13/50 (26%)
Query: 96 KLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + +L+ L + + A F + N
Sbjct: 30 QSLMELALAVLQDLHRPGLELPSPNATRDYLRVLLADRKAEVFGCMYLDN 79
>gi|320656435|gb|EFX24339.1| DNA repair protein, RadC family [Escherichia coli O55:H7 str.
3256-97 TW 07815]
Length = 90
Score = 41.5 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|260845828|ref|YP_003223606.1| putative DNA repair protein [Escherichia coli O103:H2 str. 12009]
gi|257760975|dbj|BAI32472.1| putative DNA repair protein [Escherichia coli O103:H2 str. 12009]
Length = 158
Score = 41.5 bits (96), Expect = 0.042, Method: Composition-based stats.
Identities = 6/66 (9%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFA 139
+Q+I+ + + + + + + L + T + + + F
Sbjct: 1 MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVGFTSTRAAREWLILNMAGLEREEFR 60
Query: 140 YCFSIN 145
+ N
Sbjct: 61 VLYLNN 66
>gi|15801143|ref|NP_287160.1| RadC family DNA repair protein [Escherichia coli O157:H7 EDL933]
gi|12514552|gb|AAG55772.1|AE005313_7 putative DNA repair protein, RADC family [Escherichia coli O157:H7
str. EDL933]
Length = 158
Score = 41.5 bits (96), Expect = 0.042, Method: Composition-based stats.
Identities = 3/39 (7%), Positives = 8/39 (20%)
Query: 107 KANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ T + + + F + N
Sbjct: 28 RHXHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|110640540|ref|YP_668268.1| RadC-like DNA repair protein [Escherichia coli 536]
gi|191171181|ref|ZP_03032731.1| DNA repair protein, RadC family [Escherichia coli F11]
gi|28316258|emb|CAD66203.1| hypothetical protein [Escherichia coli]
gi|110342132|gb|ABG68369.1| RadC-like DNA repair protein [Escherichia coli 536]
gi|190908481|gb|EDV68070.1| DNA repair protein, RadC family [Escherichia coli F11]
Length = 158
Score = 41.5 bits (96), Expect = 0.042, Method: Composition-based stats.
Identities = 6/66 (9%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFA 139
+Q+I+ + + + + + + L + T + + + F
Sbjct: 1 MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFR 60
Query: 140 YCFSIN 145
+ N
Sbjct: 61 VLYLNN 66
>gi|330503745|ref|YP_004380614.1| DNA repair protein RadC [Pseudomonas mendocina NK-01]
gi|328918031|gb|AEB58862.1| DNA repair protein RadC [Pseudomonas mendocina NK-01]
Length = 126
Score = 41.5 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 4/44 (9%), Positives = 10/44 (22%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+++ + + T + FA F
Sbjct: 7 MARQAIDQKYQRGALFTAPDLVKGYLRTKLVGFEHEVFAALFLD 50
>gi|170684134|ref|YP_001742412.1| RadC family DNA repair protein [Escherichia coli SMS-3-5]
gi|170521852|gb|ACB20030.1| DNA repair protein, RadC family [Escherichia coli SMS-3-5]
Length = 159
Score = 41.5 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 3/30 (10%), Positives = 6/30 (20%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSI 144
T Q ++ F +
Sbjct: 37 AFTSTQAARDWLKLKMAGLEREEFMVLYLN 66
>gi|237704459|ref|ZP_04534940.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|226900825|gb|EEH87084.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|294491633|gb|ADE90389.1| DNA repair protein, RadC family [Escherichia coli IHE3034]
gi|307554072|gb|ADN46847.1| DNA repair protein [Escherichia coli ABU 83972]
gi|323956170|gb|EGB51921.1| DNA repair protein RadC [Escherichia coli H263]
Length = 158
Score = 41.1 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|320645640|gb|EFX14645.1| DNA repair protein, RadC family [Escherichia coli O157:H- str.
493-89]
Length = 87
Score = 41.1 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|311278018|ref|YP_003940249.1| DNA repair protein RadC [Enterobacter cloacae SCF1]
gi|308747213|gb|ADO46965.1| DNA repair protein RadC [Enterobacter cloacae SCF1]
Length = 160
Score = 41.1 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 3/30 (10%), Positives = 6/30 (20%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSI 144
T Q ++ F +
Sbjct: 38 AFTSTQAARDWLKLKMAGLEREEFMVLYLN 67
>gi|297581219|ref|ZP_06943143.1| DNA repair protein [Vibrio cholerae RC385]
gi|297534535|gb|EFH73372.1| DNA repair protein [Vibrio cholerae RC385]
Length = 169
Score = 41.1 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + + + + FA F N
Sbjct: 31 VLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEMFAVLFLDN 78
>gi|33152085|ref|NP_873438.1| DNA repair protein [Haemophilus ducreyi 35000HP]
gi|33148307|gb|AAP95827.1| conserved possible DNA repair protein [Haemophilus ducreyi 35000HP]
Length = 157
Score = 41.1 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 6/63 (9%), Positives = 15/63 (23%), Gaps = 4/63 (6%)
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
Q + + + AL ++ R + + + + F
Sbjct: 6 QHQDMLNQAKALYENVLRETGIRSYAS----NPSFGDEKEASEYCQMQLGFEEREVFGVL 61
Query: 142 FSI 144
F
Sbjct: 62 FWD 64
>gi|15808746|gb|AAL08475.1| unknown [Shigella flexneri 2a]
gi|281600433|gb|ADA73417.1| putative DNA repair protein [Shigella flexneri 2002017]
Length = 163
Score = 41.1 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|218561456|ref|YP_002394369.1| DNA repair protein; CP4-44 prophage [Escherichia coli S88]
gi|218368225|emb|CAR06041.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli S88]
Length = 148
Score = 41.1 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 12 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 56
>gi|170680081|ref|YP_001743141.1| RadC family DNA repair protein [Escherichia coli SMS-3-5]
gi|170517799|gb|ACB15977.1| DNA repair protein, RadC family [Escherichia coli SMS-3-5]
Length = 158
Score = 41.1 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVPFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|157157651|ref|YP_001465824.1| RadC family DNA repair protein [Escherichia coli E24377A]
gi|298378469|ref|ZP_06988353.1| radC-like protein yeeS [Escherichia coli FVEC1302]
gi|157079681|gb|ABV19389.1| DNA repair protein, RadC family [Escherichia coli E24377A]
gi|298280803|gb|EFI22304.1| radC-like protein yeeS [Escherichia coli FVEC1302]
Length = 158
Score = 41.1 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|194426516|ref|ZP_03059070.1| DNA repair protein, RadC family [Escherichia coli B171]
gi|194415255|gb|EDX31523.1| DNA repair protein, RadC family [Escherichia coli B171]
gi|323158205|gb|EFZ44297.1| DNA repair protein RadC family protein [Escherichia coli E128010]
Length = 158
Score = 41.1 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|194432463|ref|ZP_03064750.1| DNA repair protein, RadC family [Shigella dysenteriae 1012]
gi|194419350|gb|EDX35432.1| DNA repair protein, RadC family [Shigella dysenteriae 1012]
Length = 158
Score = 41.1 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|323945928|gb|EGB41970.1| DNA repair protein RadC [Escherichia coli H120]
Length = 163
Score = 41.1 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|218698082|ref|YP_002405749.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
55989]
gi|218354814|emb|CAV01931.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
55989]
Length = 148
Score = 41.1 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 4/51 (7%), Positives = 12/51 (23%), Gaps = 1/51 (1%)
Query: 96 KLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + L + T + + + F + N
Sbjct: 6 HSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 56
>gi|153214270|ref|ZP_01949287.1| DNA repair protein RadC, putative [Vibrio cholerae 1587]
gi|124115418|gb|EAY34238.1| DNA repair protein RadC, putative [Vibrio cholerae 1587]
Length = 158
Score = 41.1 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 12/48 (25%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + + + FA F N
Sbjct: 20 VLEEAAEILEQRYVRGDTFARTENTTEYLRCKLAGYEHEMFAVLFLDN 67
>gi|300923422|ref|ZP_07139463.1| DNA repair protein RadC domain protein [Escherichia coli MS 182-1]
gi|300420332|gb|EFK03643.1| DNA repair protein RadC domain protein [Escherichia coli MS 182-1]
Length = 128
Score = 41.1 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 3/35 (8%), Positives = 8/35 (22%)
Query: 110 WSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ L + ++ + F F
Sbjct: 1 MREESPLLSPEMTREFLQSQLTGEEREIFMVIFLD 35
>gi|193069504|ref|ZP_03050458.1| DNA repair protein, RadC family [Escherichia coli E110019]
gi|192957252|gb|EDV87701.1| DNA repair protein, RadC family [Escherichia coli E110019]
Length = 158
Score = 41.1 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|26248376|ref|NP_754416.1| putative radC-like protein yeeS [Escherichia coli CFT073]
gi|26108780|gb|AAN80983.1|AE016762_236 Putative radC-like protein yeeS [Escherichia coli CFT073]
Length = 148
Score = 41.1 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 12 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 56
>gi|315614820|gb|EFU95458.1| DNA repair RadC family protein [Escherichia coli 3431]
Length = 158
Score = 41.1 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|117626422|ref|YP_859745.1| putative radC-like protein YeeS [Escherichia coli APEC O1]
gi|115515546|gb|ABJ03621.1| putative radC-like protein YeeS [Escherichia coli APEC O1]
gi|323950295|gb|EGB46176.1| DNA repair protein RadC [Escherichia coli H252]
gi|323954374|gb|EGB50158.1| DNA repair protein RadC [Escherichia coli H263]
Length = 158
Score = 41.1 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|15832057|ref|NP_310830.1| DNA repair protein [Escherichia coli O157:H7 str. Sakai]
gi|168751564|ref|ZP_02776586.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4113]
gi|168758439|ref|ZP_02783446.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4401]
gi|168764086|ref|ZP_02789093.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4501]
gi|168770321|ref|ZP_02795328.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4486]
gi|168777112|ref|ZP_02802119.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4196]
gi|168783999|ref|ZP_02809006.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4076]
gi|168790206|ref|ZP_02815213.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC869]
gi|168801968|ref|ZP_02826975.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC508]
gi|193062959|ref|ZP_03044051.1| DNA repair protein, RadC family [Escherichia coli E22]
gi|195939516|ref|ZP_03084898.1| putative DNA repair protein [Escherichia coli O157:H7 str. EC4024]
gi|208810673|ref|ZP_03252549.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4206]
gi|208816945|ref|ZP_03258065.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4045]
gi|208819226|ref|ZP_03259546.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4042]
gi|209397679|ref|YP_002271174.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4115]
gi|217329638|ref|ZP_03445717.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
TW14588]
gi|254793710|ref|YP_003078547.1| DNA repair protein [Escherichia coli O157:H7 str. TW14359]
gi|291283239|ref|YP_003500057.1| DNA repair protein, RadC family [Escherichia coli O55:H7 str.
CB9615]
gi|291284324|ref|YP_003501142.1| DNA repair protein, RadC family [Escherichia coli O55:H7 str.
CB9615]
gi|13362271|dbj|BAB36226.1| putative DNA repair protein [Escherichia coli O157:H7 str. Sakai]
gi|187767605|gb|EDU31449.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4196]
gi|188014397|gb|EDU52519.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4113]
gi|188998741|gb|EDU67727.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4076]
gi|189354753|gb|EDU73172.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4401]
gi|189360779|gb|EDU79198.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4486]
gi|189365845|gb|EDU84261.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4501]
gi|189370302|gb|EDU88718.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC869]
gi|189375952|gb|EDU94368.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC508]
gi|192931218|gb|EDV83820.1| DNA repair protein, RadC family [Escherichia coli E22]
gi|208725189|gb|EDZ74896.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4206]
gi|208731288|gb|EDZ79977.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4045]
gi|208739349|gb|EDZ87031.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4042]
gi|209159079|gb|ACI36512.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4115]
gi|217317406|gb|EEC25835.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
TW14588]
gi|254593110|gb|ACT72471.1| DNA repair protein [Escherichia coli O157:H7 str. TW14359]
gi|290763112|gb|ADD57073.1| DNA repair protein, RadC family [Escherichia coli O55:H7 str.
CB9615]
gi|290764197|gb|ADD58158.1| DNA repair protein, RadC family [Escherichia coli O55:H7 str.
CB9615]
gi|320188176|gb|EFW62840.1| putative DNA repair protein [Escherichia coli O157:H7 str. EC1212]
gi|326338356|gb|EGD62184.1| putative DNA repair protein [Escherichia coli O157:H7 str. 1044]
gi|326347123|gb|EGD70856.1| putative DNA repair protein [Escherichia coli O157:H7 str. 1125]
Length = 158
Score = 41.1 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|268323410|emb|CBH36998.1| probable DNA repair protein radC homolog [uncultured archaeon]
gi|268324046|emb|CBH37634.1| putative DNA repair protein radC [uncultured archaeon]
Length = 152
Score = 41.1 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 82 QEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYC 141
EI+ IG+ A ++ ++R +T L V K +F
Sbjct: 1 MEIDGIGETKACQILASFELARRYFG---KKDVKITFPSDVLPFVH-DISDKRQEHFVCL 56
Query: 142 FSI 144
Sbjct: 57 SLN 59
>gi|187733812|ref|YP_001879774.1| DNA repair protein, RadC family [Shigella boydii CDC 3083-94]
gi|187430804|gb|ACD10078.1| DNA repair protein, RadC family [Shigella boydii CDC 3083-94]
Length = 158
Score = 41.1 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVTFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|191167170|ref|ZP_03028990.1| DNA repair protein, RadC family [Escherichia coli B7A]
gi|190902827|gb|EDV62556.1| DNA repair protein, RadC family [Escherichia coli B7A]
Length = 158
Score = 41.1 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|323969877|gb|EGB65155.1| DNA repair protein RadC [Escherichia coli TA007]
Length = 158
Score = 41.1 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 6/66 (9%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFA 139
+Q+I+ + + + + + + L + T + + F
Sbjct: 1 MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFR 60
Query: 140 YCFSIN 145
+ N
Sbjct: 61 VLYLNN 66
>gi|82776320|ref|YP_402669.1| putative radC-like protein yeeS [Shigella dysenteriae Sd197]
gi|309786791|ref|ZP_07681411.1| DNA repair RadC family protein [Shigella dysenteriae 1617]
gi|81240468|gb|ABB61178.1| Putative radC-like protein yeeS [Shigella dysenteriae Sd197]
gi|308925484|gb|EFP70971.1| DNA repair RadC family protein [Shigella dysenteriae 1617]
Length = 150
Score = 41.1 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 5/56 (8%), Positives = 11/56 (19%), Gaps = 1/56 (1%)
Query: 91 VALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
L + + L + T + + F + N
Sbjct: 3 QISFLPGEMTTALKALDRHIHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 58
>gi|15800738|ref|NP_286752.1| RadC family DNA repair protein [Escherichia coli O157:H7 EDL933]
gi|15830657|ref|NP_309430.1| DNA repair protein [Escherichia coli O157:H7 str. Sakai]
gi|168747209|ref|ZP_02772231.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4113]
gi|168754500|ref|ZP_02779507.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4401]
gi|168760639|ref|ZP_02785646.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4501]
gi|168767678|ref|ZP_02792685.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4486]
gi|168773864|ref|ZP_02798871.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4196]
gi|168781194|ref|ZP_02806201.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4076]
gi|168789211|ref|ZP_02814218.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC869]
gi|168789954|ref|ZP_02814961.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC869]
gi|168799298|ref|ZP_02824305.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC508]
gi|195935412|ref|ZP_03080794.1| putative DNA repair protein [Escherichia coli O157:H7 str. EC4024]
gi|208806612|ref|ZP_03248949.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4206]
gi|208815111|ref|ZP_03256290.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4045]
gi|208822765|ref|ZP_03263084.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4042]
gi|209398241|ref|YP_002269871.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4115]
gi|215486235|ref|YP_002328666.1| hypothetical protein E2348C_1116 [Escherichia coli O127:H6 str.
E2348/69]
gi|217328314|ref|ZP_03444396.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
TW14588]
gi|254792408|ref|YP_003077245.1| putative DNA repair protein, RADC family [Escherichia coli O157:H7
str. TW14359]
gi|260854510|ref|YP_003228401.1| hypothetical protein ECO26_1359 [Escherichia coli O26:H11 str.
11368]
gi|260867389|ref|YP_003233791.1| hypothetical protein ECO111_1303 [Escherichia coli O111:H- str.
11128]
gi|12514034|gb|AAG55362.1|AE005277_3 putative DNA repair protein, RADC family [Escherichia coli O157:H7
str. EDL933]
gi|13360863|dbj|BAB34826.1| putative DNA repair protein [Escherichia coli O157:H7 str. Sakai]
gi|187770349|gb|EDU34193.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4196]
gi|188018129|gb|EDU56251.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4113]
gi|189001340|gb|EDU70326.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4076]
gi|189358273|gb|EDU76692.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4401]
gi|189363292|gb|EDU81711.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4486]
gi|189368665|gb|EDU87081.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4501]
gi|189370470|gb|EDU88886.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC869]
gi|189371180|gb|EDU89596.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC869]
gi|189378248|gb|EDU96664.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC508]
gi|208726413|gb|EDZ76014.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4206]
gi|208731759|gb|EDZ80447.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4045]
gi|208738250|gb|EDZ85933.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4042]
gi|209159641|gb|ACI37074.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
EC4115]
gi|215264307|emb|CAS08664.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
gi|217318741|gb|EEC27167.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
TW14588]
gi|254591808|gb|ACT71169.1| putative DNA repair protein, RADC family [Escherichia coli O157:H7
str. TW14359]
gi|257753159|dbj|BAI24661.1| hypothetical protein ECO26_1359 [Escherichia coli O26:H11 str.
11368]
gi|257763745|dbj|BAI35240.1| hypothetical protein ECO111_1303 [Escherichia coli O111:H- str.
11128]
gi|320189702|gb|EFW64358.1| Putative radC-like protein yeeS [Escherichia coli O157:H7 str.
EC1212]
gi|323156828|gb|EFZ42962.1| DNA repair RadC family protein [Escherichia coli EPECa14]
gi|326339244|gb|EGD63058.1| Putative radC-like protein yeeS [Escherichia coli O157:H7 str.
1125]
gi|326344796|gb|EGD68544.1| Putative radC-like protein yeeS [Escherichia coli O157:H7 str.
1044]
Length = 158
Score = 41.1 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|262402819|ref|ZP_06079380.1| DNA repair protein RadC [Vibrio sp. RC586]
gi|262351601|gb|EEZ00734.1| DNA repair protein RadC [Vibrio sp. RC586]
Length = 158
Score = 41.1 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + + + + FA F N
Sbjct: 20 VLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEMFAVLFLDN 67
>gi|315256374|gb|EFU36342.1| putative DNA repair protein RadC [Escherichia coli MS 85-1]
Length = 158
Score = 41.1 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|293406039|ref|ZP_06650027.1| DNA repair protein [Escherichia coli FVEC1412]
gi|291426883|gb|EFE99913.1| DNA repair protein [Escherichia coli FVEC1412]
Length = 155
Score = 41.1 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|281179100|dbj|BAI55430.1| conserved hypothetical protein [Escherichia coli SE15]
Length = 163
Score = 41.1 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|218707946|ref|YP_002415465.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
UMN026]
gi|331650756|ref|ZP_08351784.1| putative DNA repair protein [Escherichia coli M718]
gi|218435043|emb|CAR15996.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
UMN026]
gi|323950625|gb|EGB46503.1| DNA repair protein RadC [Escherichia coli H252]
gi|331051210|gb|EGI23259.1| putative DNA repair protein [Escherichia coli M718]
Length = 163
Score = 41.1 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|195183362|dbj|BAG66899.1| predicted protein [Escherichia coli O111:H-]
Length = 163
Score = 41.1 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|194449680|ref|YP_002048317.1| DNA repair protein, RadC family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194407984|gb|ACF68203.1| DNA repair protein, RadC family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
Length = 158
Score = 41.1 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|26247156|ref|NP_753196.1| putative radC-like protein yeeS [Escherichia coli CFT073]
gi|331673519|ref|ZP_08374284.1| DNA repair protein, RADC family [Escherichia coli TA280]
gi|26107557|gb|AAN79756.1|AE016759_30 Putative radC-like protein yeeS [Escherichia coli CFT073]
gi|307553028|gb|ADN45803.1| DNA repair protein [Escherichia coli ABU 83972]
gi|331069313|gb|EGI40703.1| DNA repair protein, RADC family [Escherichia coli TA280]
Length = 158
Score = 41.1 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|320201859|gb|EFW76434.1| putative radC-like protein [Escherichia coli EC4100B]
Length = 124
Score = 41.1 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 3/32 (9%), Positives = 7/32 (21%)
Query: 114 KFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
T + + + F + N
Sbjct: 1 MAFTSTRAAREWLILNMAGLEREEFRVLYLNN 32
>gi|188495664|ref|ZP_03002934.1| DNA repair protein, RadC family [Escherichia coli 53638]
gi|193062199|ref|ZP_03043295.1| DNA repair protein, RadC family [Escherichia coli E22]
gi|193062945|ref|ZP_03044038.1| DNA repair protein, RadC family [Escherichia coli E22]
gi|256023420|ref|ZP_05437285.1| DNA repair protein [Escherichia sp. 4_1_40B]
gi|260844612|ref|YP_003222390.1| putative DNA repair protein [Escherichia coli O103:H2 str. 12009]
gi|260856468|ref|YP_003230359.1| putative DNA repair protein [Escherichia coli O26:H11 str. 11368]
gi|260868651|ref|YP_003235053.1| putative DNA repair protein [Escherichia coli O111:H- str. 11128]
gi|300824768|ref|ZP_07104873.1| putative DNA repair protein RadC [Escherichia coli MS 119-7]
gi|312973758|ref|ZP_07787930.1| DNA repair RadC family protein [Escherichia coli 1827-70]
gi|188490863|gb|EDU65966.1| DNA repair protein, RadC family [Escherichia coli 53638]
gi|192931588|gb|EDV84189.1| DNA repair protein, RadC family [Escherichia coli E22]
gi|192932419|gb|EDV85017.1| DNA repair protein, RadC family [Escherichia coli E22]
gi|226237408|dbj|BAH46930.1| predicted DNA repair protein [Escherichia coli O55:H7]
gi|257755117|dbj|BAI26619.1| putative DNA repair protein [Escherichia coli O26:H11 str. 11368]
gi|257759759|dbj|BAI31256.1| putative DNA repair protein [Escherichia coli O103:H2 str. 12009]
gi|257765007|dbj|BAI36502.1| putative DNA repair protein [Escherichia coli O111:H- str. 11128]
gi|300522755|gb|EFK43824.1| putative DNA repair protein RadC [Escherichia coli MS 119-7]
gi|310332353|gb|EFP99588.1| DNA repair RadC family protein [Escherichia coli 1827-70]
gi|323156365|gb|EFZ42522.1| DNA repair RadC family protein [Escherichia coli EPECa14]
gi|323177162|gb|EFZ62752.1| DNA repair protein RadC family protein [Escherichia coli 1180]
gi|330911842|gb|EGH40352.1| putative DNA repair protein [Escherichia coli AA86]
gi|332092379|gb|EGI97452.1| DNA repair protein RadC family protein [Shigella boydii 5216-82]
Length = 158
Score = 41.1 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|300816625|ref|ZP_07096846.1| putative DNA repair protein RadC [Escherichia coli MS 107-1]
gi|300530855|gb|EFK51917.1| putative DNA repair protein RadC [Escherichia coli MS 107-1]
Length = 158
Score = 41.1 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|218561228|ref|YP_002394141.1| DNA repair protein; CP4-44 prophage [Escherichia coli S88]
gi|218367997|emb|CAR05797.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli S88]
Length = 148
Score = 41.1 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 12 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 56
>gi|170765890|ref|ZP_02900701.1| DNA repair protein, RadC family [Escherichia albertii TW07627]
gi|260858467|ref|YP_003232358.1| putative DNA repair protein [Escherichia coli O26:H11 str. 11368]
gi|331668235|ref|ZP_08369085.1| putative DNA repair protein [Escherichia coli TA271]
gi|170125036|gb|EDS93967.1| DNA repair protein, RadC family [Escherichia albertii TW07627]
gi|257757116|dbj|BAI28618.1| putative DNA repair protein [Escherichia coli O26:H11 str. 11368]
gi|309702306|emb|CBJ01626.1| putative RadC-like DNA repair protein [Escherichia coli ETEC
H10407]
gi|323172584|gb|EFZ58218.1| DNA repair protein RadC family protein [Escherichia coli LT-68]
gi|331064536|gb|EGI36445.1| putative DNA repair protein [Escherichia coli TA271]
Length = 158
Score = 41.1 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|26250960|ref|NP_757000.1| putative radC-like protein yeeS [Escherichia coli CFT073]
gi|117625240|ref|YP_854323.1| putative radC-like protein YeeS [Escherichia coli APEC O1]
gi|26111392|gb|AAN83574.1|AE016771_85 Putative radC-like protein yeeS [Escherichia coli CFT073]
gi|70608386|gb|AAZ04458.1| putative RadC-like protein [Escherichia coli]
gi|115514364|gb|ABJ02439.1| putative radC-like protein YeeS [Escherichia coli APEC O1]
gi|323957540|gb|EGB53256.1| DNA repair protein RadC [Escherichia coli H263]
Length = 158
Score = 41.1 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|91211289|ref|YP_541275.1| hypothetical protein UTI89_C2276 [Escherichia coli UTI89]
gi|91213942|ref|YP_543928.1| hypothetical protein UTI89_C4994 [Escherichia coli UTI89]
gi|110644738|ref|YP_672468.1| putative DNA repair protein [Escherichia coli 536]
gi|191170846|ref|ZP_03032398.1| DNA repair protein, RadC family [Escherichia coli F11]
gi|23954299|emb|CAD42098.1| hypothetical protein [Escherichia coli]
gi|91072863|gb|ABE07744.1| hypothetical protein UTI89_C2276 [Escherichia coli UTI89]
gi|91075516|gb|ABE10397.1| hypothetical protein UTI89_C4994 [Escherichia coli UTI89]
gi|110346330|gb|ABG72567.1| putative DNA repair protein [Escherichia coli 536]
gi|190909070|gb|EDV68657.1| DNA repair protein, RadC family [Escherichia coli F11]
gi|307626452|gb|ADN70756.1| putative DNA repair protein [Escherichia coli UM146]
gi|307629456|gb|ADN73760.1| putative DNA repair protein [Escherichia coli UM146]
gi|330907975|gb|EGH36494.1| putative radC-like protein yeeS [Escherichia coli AA86]
Length = 158
Score = 41.1 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|16129943|ref|NP_416506.1| CP4-44 prophage; predicted DNA repair protein [Escherichia coli
str. K-12 substr. MG1655]
gi|89108821|ref|AP_002601.1| predicted DNA repair protein [Escherichia coli str. K-12 substr.
W3110]
gi|170081631|ref|YP_001730951.1| CP4-44 prophage; DNA repair protein [Escherichia coli str. K-12
substr. DH10B]
gi|218558883|ref|YP_002391796.1| DNA repair protein; CP4-44 prophage [Escherichia coli S88]
gi|218690065|ref|YP_002398277.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
ED1a]
gi|218695627|ref|YP_002403294.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
55989]
gi|238901193|ref|YP_002926989.1| CP4-44 prophage; putative DNA repair protein [Escherichia coli
BW2952]
gi|3025155|sp|P76362|YEES_ECOLI RecName: Full=UPF0758 protein yeeS
gi|1736671|dbj|BAA15826.1| predicted DNA repair protein [Escherichia coli str. K12 substr.
W3110]
gi|1788312|gb|AAC75063.1| CP4-44 prophage; predicted DNA repair protein [Escherichia coli
str. K-12 substr. MG1655]
gi|169889466|gb|ACB03173.1| CP4-44 prophage; predicted DNA repair protein [Escherichia coli
str. K-12 substr. DH10B]
gi|218352359|emb|CAU98132.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
55989]
gi|218365652|emb|CAR03388.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli S88]
gi|218427629|emb|CAR08539.2| putative DNA repair protein; CP4-44 prophage [Escherichia coli
ED1a]
gi|238860616|gb|ACR62614.1| CP4-44 prophage; predicted DNA repair protein [Escherichia coli
BW2952]
gi|260448897|gb|ACX39319.1| DNA repair protein RadC [Escherichia coli DH1]
gi|315136634|dbj|BAJ43793.1| DNA repair protein, RadC family [Escherichia coli DH1]
Length = 148
Score = 41.1 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 12 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 56
>gi|218560008|ref|YP_002392921.1| DNA repair protein; CP4-44 prophage [Escherichia coli S88]
gi|218366777|emb|CAR04544.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli S88]
Length = 148
Score = 41.1 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 12 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 56
>gi|26249506|ref|NP_755546.1| putative radC-like protein yeeS [Escherichia coli CFT073]
gi|301017434|ref|ZP_07182164.1| putative DNA repair protein RadC [Escherichia coli MS 69-1]
gi|26109914|gb|AAN82119.1|AE016766_207 Putative radC-like protein yeeS [Escherichia coli CFT073]
gi|291291731|gb|ADD91702.1| YeeS [Escherichia coli]
gi|300400214|gb|EFJ83752.1| putative DNA repair protein RadC [Escherichia coli MS 69-1]
gi|323960166|gb|EGB55809.1| DNA repair protein RadC [Escherichia coli H489]
gi|332102586|gb|EGJ05932.1| YeeS protein [Shigella sp. D9]
Length = 163
Score = 40.7 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|331647648|ref|ZP_08348740.1| putative DNA repair protein [Escherichia coli M605]
gi|331043372|gb|EGI15510.1| putative DNA repair protein [Escherichia coli M605]
Length = 163
Score = 40.7 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|218692535|ref|YP_002400747.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
ED1a]
gi|283788471|ref|YP_003368336.1| putative DNA repair protein [Citrobacter rodentium ICC168]
gi|218430099|emb|CAR11092.2| putative DNA repair protein; CP4-44 prophage [Escherichia coli
ED1a]
gi|282951925|emb|CBG91646.1| putative DNA repair protein [Citrobacter rodentium ICC168]
Length = 163
Score = 40.7 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|260845668|ref|YP_003223446.1| putative radC-like protein YeeS [Escherichia coli O103:H2 str.
12009]
gi|257760815|dbj|BAI32312.1| putative radC-like protein YeeS [Escherichia coli O103:H2 str.
12009]
Length = 158
Score = 40.7 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVGFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|256024477|ref|ZP_05438342.1| putative radC-like protein YeeS [Escherichia sp. 4_1_40B]
Length = 158
Score = 40.7 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|91210173|ref|YP_540159.1| putative radC-like protein YeeS [Escherichia coli UTI89]
gi|312966012|ref|ZP_07780238.1| DNA repair RadC family protein [Escherichia coli 2362-75]
gi|91071747|gb|ABE06628.1| putative radC-like protein YeeS [Escherichia coli UTI89]
gi|294490760|gb|ADE89516.1| DNA repair protein, RadC family [Escherichia coli IHE3034]
gi|307627505|gb|ADN71809.1| putative DNA repair protein [Escherichia coli UM146]
gi|312289255|gb|EFR17149.1| DNA repair RadC family protein [Escherichia coli 2362-75]
Length = 158
Score = 40.7 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|110643998|ref|YP_671728.1| putative radC-like protein [Escherichia coli 536]
gi|170682543|ref|YP_001744295.1| RadC family DNA repair protein [Escherichia coli SMS-3-5]
gi|256019130|ref|ZP_05432995.1| putative radC-like protein [Shigella sp. D9]
gi|306816730|ref|ZP_07450859.1| putative radC-like protein [Escherichia coli NC101]
gi|309797259|ref|ZP_07691654.1| putative DNA repair protein RadC [Escherichia coli MS 145-7]
gi|24528057|emb|CAD33787.1| Z1217 protein [Escherichia coli]
gi|110345590|gb|ABG71827.1| putative radC-like protein [Escherichia coli 536]
gi|170520261|gb|ACB18439.1| DNA repair protein, RadC family [Escherichia coli SMS-3-5]
gi|305849947|gb|EFM50407.1| putative radC-like protein [Escherichia coli NC101]
gi|307555022|gb|ADN47797.1| DNA repair protein [Escherichia coli ABU 83972]
gi|308119134|gb|EFO56396.1| putative DNA repair protein RadC [Escherichia coli MS 145-7]
Length = 158
Score = 40.7 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|254038104|ref|ZP_04872162.1| YeeS protein [Escherichia sp. 1_1_43]
gi|226839728|gb|EEH71749.1| YeeS protein [Escherichia sp. 1_1_43]
Length = 163
Score = 40.7 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|218692437|ref|YP_002400649.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
ED1a]
gi|218702808|ref|YP_002410437.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
IAI39]
gi|254162884|ref|YP_003045992.1| putative DNA repair protein [Escherichia coli B str. REL606]
gi|218372794|emb|CAR20673.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
IAI39]
gi|218430001|emb|CAR10981.2| putative DNA repair protein; CP4-44 prophage [Escherichia coli
ED1a]
gi|253974785|gb|ACT40456.1| predicted DNA repair protein [Escherichia coli B str. REL606]
Length = 148
Score = 40.7 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 12 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 56
>gi|193071485|ref|ZP_03052397.1| DNA repair protein, RadC family [Escherichia coli E110019]
gi|331668227|ref|ZP_08369078.1| putative DNA repair protein [Escherichia coli TA271]
gi|192955207|gb|EDV85698.1| DNA repair protein, RadC family [Escherichia coli E110019]
gi|331064545|gb|EGI36453.1| putative DNA repair protein [Escherichia coli TA271]
Length = 158
Score = 40.7 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|307556532|gb|ADN49307.1| DNA repair protein [Escherichia coli ABU 83972]
Length = 158
Score = 40.7 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|325277161|ref|ZP_08142806.1| DNA repair protein RadC [Pseudomonas sp. TJI-51]
gi|324097699|gb|EGB95900.1| DNA repair protein RadC [Pseudomonas sp. TJI-51]
Length = 165
Score = 40.7 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 4/44 (9%), Positives = 12/44 (27%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++++ + LT + ++ FA
Sbjct: 29 MARQLASLRLRKGRALTSPKEAFSHLQTLLADYEHEVFALLMLD 72
>gi|21243016|ref|NP_642598.1| RadC family protein [Xanthomonas axonopodis pv. citri str. 306]
gi|21108524|gb|AAM37134.1| RadC family protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 164
Score = 40.7 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 4/59 (6%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 88 GKRVALELKLVSVASQRILKANW-SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+++ + + +L+ + ++ + + + F F N
Sbjct: 14 TPAFSVQENRLIYRAIEVLERKLFQREAYIPSPEALFDYLRLKLAREPNEIFGAVFLDN 72
>gi|260846935|ref|YP_003224713.1| putative DNA repair protein [Escherichia coli O103:H2 str. 12009]
gi|257762082|dbj|BAI33579.1| putative DNA repair protein [Escherichia coli O103:H2 str. 12009]
Length = 158
Score = 40.7 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVSFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|320640296|gb|EFX09863.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
G5101]
Length = 88
Score = 40.7 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|295698144|ref|YP_003602800.1| DNA repair protein RadC [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295060256|gb|ADF64992.1| DNA repair protein RadC [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 147
Score = 40.7 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 101 ASQRILKANWSIKK-FLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ IL++ T + H K F + N
Sbjct: 10 LAMAILESRLKTTSFSFTSPDAVKQYLRLHLQNKEREFFGALYLNN 55
>gi|331677904|ref|ZP_08378579.1| putative DNA repair protein [Escherichia coli H591]
gi|195183284|dbj|BAG66823.1| conserved predicted protein [Escherichia coli O111:H-]
gi|323936899|gb|EGB33182.1| DNA repair protein RadC [Escherichia coli E1520]
gi|323938740|gb|EGB34987.1| DNA repair protein RadC [Escherichia coli E1520]
gi|331074364|gb|EGI45684.1| putative DNA repair protein [Escherichia coli H591]
Length = 163
Score = 40.7 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|284922959|emb|CBG36051.1| putative DNA repair protein [Escherichia coli 042]
gi|284924496|emb|CBG37630.1| putative RadC-like DNA repair protein [Escherichia coli 042]
gi|323939702|gb|EGB35906.1| DNA repair protein RadC [Escherichia coli E482]
gi|323961766|gb|EGB57367.1| DNA repair protein RadC [Escherichia coli H489]
Length = 163
Score = 40.7 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|229529171|ref|ZP_04418561.1| DNA repair protein RadC [Vibrio cholerae 12129(1)]
gi|229530051|ref|ZP_04419441.1| DNA repair protein RadC [Vibrio cholerae 12129(1)]
gi|254285246|ref|ZP_04960211.1| DNA repair protein RadC, putative [Vibrio cholerae AM-19226]
gi|258620000|ref|ZP_05715040.1| RadC-like protein [Vibrio mimicus VM573]
gi|150424518|gb|EDN16454.1| DNA repair protein RadC, putative [Vibrio cholerae AM-19226]
gi|229332945|gb|EEN98431.1| DNA repair protein RadC [Vibrio cholerae 12129(1)]
gi|229333825|gb|EEN99311.1| DNA repair protein RadC [Vibrio cholerae 12129(1)]
gi|258587733|gb|EEW12442.1| RadC-like protein [Vibrio mimicus VM573]
Length = 158
Score = 40.7 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + + + + FA F N
Sbjct: 20 VLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEMFAVLFLDN 67
>gi|218699408|ref|YP_002407037.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
IAI39]
gi|218369394|emb|CAR17153.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
IAI39]
Length = 158
Score = 40.7 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|82779592|ref|YP_405941.1| putative DNA repair protein [Shigella dysenteriae Sd197]
gi|309787459|ref|ZP_07682071.1| DNA repair RadC family protein [Shigella dysenteriae 1617]
gi|81243740|gb|ABB64450.1| putative DNA repair protein [Shigella dysenteriae Sd197]
gi|308925037|gb|EFP70532.1| DNA repair RadC family protein [Shigella dysenteriae 1617]
Length = 158
Score = 40.7 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|57545665|gb|AAW51756.1| Aec73 [Escherichia coli]
Length = 163
Score = 40.7 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|300818066|ref|ZP_07098279.1| putative DNA repair protein RadC [Escherichia coli MS 107-1]
gi|301330444|ref|ZP_07223068.1| putative DNA repair protein RadC [Escherichia coli MS 78-1]
gi|47155002|emb|CAE85201.1| YeeS protein [Escherichia coli]
gi|300529476|gb|EFK50538.1| putative DNA repair protein RadC [Escherichia coli MS 107-1]
gi|300843599|gb|EFK71359.1| putative DNA repair protein RadC [Escherichia coli MS 78-1]
Length = 163
Score = 40.7 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|161615563|ref|YP_001589528.1| hypothetical protein SPAB_03337 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|200390680|ref|ZP_03217291.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205351604|ref|YP_002225405.1| hypothetical protein SG0271 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|161364927|gb|ABX68695.1| hypothetical protein SPAB_03337 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|199603125|gb|EDZ01671.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205271385|emb|CAR36178.1| putative exported protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326626631|gb|EGE32974.1| Putative exported protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 159
Score = 40.7 bits (94), Expect = 0.067, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L++ T + F F N
Sbjct: 23 ALTLLESQLREPGAAFTSSHAVRDWLRLQLSAPEREEFVALFLDN 67
>gi|298382287|ref|ZP_06991884.1| radC-like protein yeeS [Escherichia coli FVEC1302]
gi|298277427|gb|EFI18943.1| radC-like protein yeeS [Escherichia coli FVEC1302]
Length = 158
Score = 40.7 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|110643167|ref|YP_670897.1| putative radC-like protein YeeS [Escherichia coli 536]
gi|191171912|ref|ZP_03033458.1| DNA repair protein, RadC family [Escherichia coli F11]
gi|194436803|ref|ZP_03068903.1| DNA repair protein, RadC family [Escherichia coli 101-1]
gi|260855983|ref|YP_003229874.1| putative DNA repair protein [Escherichia coli O26:H11 str. 11368]
gi|110344759|gb|ABG70996.1| putative radC-like protein YeeS [Escherichia coli 536]
gi|190907947|gb|EDV67540.1| DNA repair protein, RadC family [Escherichia coli F11]
gi|194424285|gb|EDX40272.1| DNA repair protein, RadC family [Escherichia coli 101-1]
gi|257754632|dbj|BAI26134.1| predicted DNA repair protein [Escherichia coli O26:H11 str. 11368]
Length = 158
Score = 40.7 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|85707304|ref|ZP_01038388.1| DNA repair protein RadC [Roseovarius sp. 217]
gi|85668185|gb|EAQ23062.1| DNA repair protein RadC [Roseovarius sp. 217]
Length = 146
Score = 40.7 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 6/43 (13%), Positives = 10/43 (23%), Gaps = 1/43 (2%)
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++ IL S + Q L F +
Sbjct: 12 ARDILGRYLSQNPVIGSWQALLDYCALTVRG-PVERFHVLYLD 53
>gi|315296395|gb|EFU55695.1| DNA repair protein RadC family protein [Escherichia coli MS 16-3]
Length = 159
Score = 40.7 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 23 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 67
>gi|300903084|ref|ZP_07121021.1| putative DNA repair protein RadC [Escherichia coli MS 84-1]
gi|300404861|gb|EFJ88399.1| putative DNA repair protein RadC [Escherichia coli MS 84-1]
Length = 163
Score = 40.7 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 71
>gi|218706553|ref|YP_002414072.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
UMN026]
gi|218433650|emb|CAR14565.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
UMN026]
Length = 148
Score = 40.7 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 12 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 56
>gi|57434429|emb|CAI43846.1| YeeS protein [Escherichia coli]
Length = 163
Score = 40.7 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|323152386|gb|EFZ38674.1| DNA repair radC domain protein [Escherichia coli EPECa14]
Length = 148
Score = 40.7 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 12 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 56
>gi|323971802|gb|EGB67027.1| DNA repair protein RadC [Escherichia coli TA007]
Length = 158
Score = 40.7 bits (94), Expect = 0.070, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|309704104|emb|CBJ03451.1| putative radC-like protein [Escherichia coli ETEC H10407]
Length = 158
Score = 40.7 bits (94), Expect = 0.070, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|331685379|ref|ZP_08385965.1| putative DNA repair protein [Escherichia coli H299]
gi|323939165|gb|EGB35379.1| DNA repair protein RadC [Escherichia coli E482]
gi|331077750|gb|EGI48962.1| putative DNA repair protein [Escherichia coli H299]
Length = 158
Score = 40.7 bits (94), Expect = 0.070, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|331679016|ref|ZP_08379688.1| putative DNA repair protein [Escherichia coli H591]
gi|331073081|gb|EGI44404.1| putative DNA repair protein [Escherichia coli H591]
Length = 158
Score = 40.7 bits (94), Expect = 0.070, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|284922002|emb|CBG35080.1| putative DNA repair protein [Escherichia coli 042]
Length = 163
Score = 40.7 bits (94), Expect = 0.071, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|26246178|ref|NP_752217.1| putative radC-like protein yeeS [Escherichia coli CFT073]
gi|18265872|gb|AAL67345.1|AF447814_13 intergenic-region protein [Escherichia coli]
gi|26106575|gb|AAN78761.1|AE016755_261 Putative radC-like protein yeeS [Escherichia coli CFT073]
Length = 163
Score = 40.7 bits (94), Expect = 0.071, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|306814130|ref|ZP_07448300.1| putative DNA repair protein [Escherichia coli NC101]
gi|331656222|ref|ZP_08357184.1| intergenic-region protein [Escherichia coli TA206]
gi|305852517|gb|EFM52966.1| putative DNA repair protein [Escherichia coli NC101]
gi|307552078|gb|ADN44853.1| putative radC-like protein [Escherichia coli ABU 83972]
gi|331054470|gb|EGI26479.1| intergenic-region protein [Escherichia coli TA206]
Length = 158
Score = 40.7 bits (94), Expect = 0.074, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|254429147|ref|ZP_05042854.1| DNA repair protein RadC [Alcanivorax sp. DG881]
gi|196195316|gb|EDX90275.1| DNA repair protein RadC [Alcanivorax sp. DG881]
Length = 164
Score = 40.7 bits (94), Expect = 0.074, Method: Composition-based stats.
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ IL + ++ LT ++ + FA F N
Sbjct: 28 TAATILLNELTGREALTAPTDVAQFLQMALAQEKNEVFAAIFLNN 72
>gi|331654132|ref|ZP_08355132.1| putative DNA repair protein [Escherichia coli M718]
gi|331047514|gb|EGI19591.1| putative DNA repair protein [Escherichia coli M718]
Length = 163
Score = 40.7 bits (94), Expect = 0.075, Method: Composition-based stats.
Identities = 5/71 (7%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKN 134
++Q+++ + + + + + + L + T + +
Sbjct: 1 MERSIMQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLE 60
Query: 135 ANNFAYCFSIN 145
F + N
Sbjct: 61 REEFRVLYLNN 71
>gi|317493712|ref|ZP_07952129.1| DNA repair protein RadC [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918039|gb|EFV39381.1| DNA repair protein RadC [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 159
Score = 40.7 bits (94), Expect = 0.075, Method: Composition-based stats.
Identities = 2/31 (6%), Positives = 5/31 (16%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
T + F + +
Sbjct: 37 AFTSTSAVRDWLCLRMAGCEREEFMVLYLNH 67
>gi|218691142|ref|YP_002399354.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
ED1a]
gi|331681607|ref|ZP_08382243.1| intergenic-region protein [Escherichia coli H299]
gi|218428706|emb|CAR09496.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
ED1a]
gi|331081181|gb|EGI52343.1| intergenic-region protein [Escherichia coli H299]
Length = 148
Score = 40.3 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 12 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 56
>gi|323960883|gb|EGB56503.1| DNA repair protein RadC [Escherichia coli H489]
Length = 163
Score = 40.3 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|309703383|emb|CBJ02722.1| putative RadC DNA repair protein [Escherichia coli ETEC H10407]
Length = 158
Score = 40.3 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLGRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|331650180|ref|ZP_08351253.1| DNA repair protein RadC [Escherichia coli M605]
gi|331041125|gb|EGI13282.1| DNA repair protein RadC [Escherichia coli M605]
Length = 163
Score = 40.3 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 71
>gi|323951546|gb|EGB47421.1| DNA repair protein RadC [Escherichia coli H252]
Length = 158
Score = 40.3 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 3/31 (9%), Positives = 7/31 (22%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
T + + + F + N
Sbjct: 36 AFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|170683005|ref|YP_001745192.1| RadC family DNA repair protein [Escherichia coli SMS-3-5]
gi|170520723|gb|ACB18901.1| DNA repair protein, RadC family [Escherichia coli SMS-3-5]
Length = 158
Score = 40.3 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|300905935|ref|ZP_07123664.1| putative DNA repair protein RadC [Escherichia coli MS 84-1]
gi|300402241|gb|EFJ85779.1| putative DNA repair protein RadC [Escherichia coli MS 84-1]
Length = 158
Score = 40.3 bits (93), Expect = 0.079, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|170680679|ref|YP_001746718.1| RadC family DNA repair protein [Escherichia coli SMS-3-5]
gi|170518397|gb|ACB16575.1| DNA repair protein, RadC family [Escherichia coli SMS-3-5]
Length = 158
Score = 40.3 bits (93), Expect = 0.079, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|26250393|ref|NP_756433.1| putative radC-like protein yeeS [Escherichia coli CFT073]
gi|26110823|gb|AAN83007.1|AE016769_122 Putative radC-like protein yeeS [Escherichia coli CFT073]
Length = 148
Score = 40.3 bits (93), Expect = 0.079, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 12 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 56
>gi|261226450|ref|ZP_05940731.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256435|ref|ZP_05948968.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
FRIK966]
Length = 106
Score = 40.3 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|218692705|ref|YP_002400917.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
ED1a]
gi|218430269|emb|CAR11137.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
ED1a]
Length = 163
Score = 40.3 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 27 ALKTLGRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 71
>gi|320184366|gb|EFW59178.1| putative DNA repair protein [Shigella flexneri CDC 796-83]
Length = 158
Score = 40.3 bits (93), Expect = 0.083, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|237704007|ref|ZP_04534488.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|226901919|gb|EEH88178.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
Length = 163
Score = 40.3 bits (93), Expect = 0.083, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLLLNMAGLEREEFRVLYLNN 71
>gi|157156526|ref|YP_001464352.1| RadC family DNA repair protein [Escherichia coli E24377A]
gi|157078556|gb|ABV18264.1| DNA repair protein, RadC family [Escherichia coli E24377A]
Length = 158
Score = 40.3 bits (93), Expect = 0.083, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|301304122|ref|ZP_07210238.1| putative DNA repair protein RadC [Escherichia coli MS 124-1]
gi|300840535|gb|EFK68295.1| putative DNA repair protein RadC [Escherichia coli MS 124-1]
gi|315252292|gb|EFU32260.1| putative DNA repair protein RadC [Escherichia coli MS 85-1]
Length = 163
Score = 40.3 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 5/71 (7%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKN 134
++Q+++ + + + + + + L + T + +
Sbjct: 1 MERSIMQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLE 60
Query: 135 ANNFAYCFSIN 145
F + N
Sbjct: 61 REEFRVLYLNN 71
>gi|218696658|ref|YP_002404325.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
55989]
gi|218353390|emb|CAU99429.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
55989]
Length = 148
Score = 40.3 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 12 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 56
>gi|157154969|ref|YP_001464407.1| RadC family DNA repair protein [Escherichia coli E24377A]
gi|157076999|gb|ABV16707.1| DNA repair protein, RadC family [Escherichia coli E24377A]
Length = 158
Score = 40.3 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLGRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|309704613|emb|CBJ03963.1| putative radC DNA repair protein [Escherichia coli ETEC H10407]
Length = 148
Score = 40.3 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 12 ALKTLGRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 56
>gi|331654543|ref|ZP_08355543.1| intergenic-region protein [Escherichia coli M718]
gi|331047925|gb|EGI20002.1| intergenic-region protein [Escherichia coli M718]
Length = 163
Score = 40.3 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 27 ALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 71
>gi|320657673|gb|EFX25468.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320663354|gb|EFX30656.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
O55:H7 str. USDA 5905]
Length = 87
Score = 40.3 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|57434486|emb|CAI43901.1| YeeS protein [Escherichia coli]
Length = 163
Score = 40.3 bits (93), Expect = 0.087, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 71
>gi|292486886|ref|YP_003529756.1| DNA repair protein radC [Erwinia amylovora CFBP1430]
gi|292900719|ref|YP_003540088.1| RadC-like protein [Erwinia amylovora ATCC 49946]
gi|291200567|emb|CBJ47696.1| putative RadC-like protein [Erwinia amylovora ATCC 49946]
gi|291552303|emb|CBA19340.1| DNA repair protein radC homolog [Erwinia amylovora CFBP1430]
Length = 156
Score = 40.3 bits (93), Expect = 0.089, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 11/43 (25%)
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + K + T ++ + F + N
Sbjct: 23 RLLEKYQRQPSEPFTSTSFTKTWLQLQMAHQEREVFIVMYLDN 65
>gi|24114260|ref|NP_708770.1| RADC family DNA repair protein [Shigella flexneri 2a str. 301]
gi|30064313|ref|NP_838484.1| RADC family DNA repair protein [Shigella flexneri 2a str. 2457T]
gi|24053414|gb|AAN44477.1| putative RADC family DNA repair protein [Shigella flexneri 2a str.
301]
gi|30042570|gb|AAP18294.1| putative RADC family DNA repair protein [Shigella flexneri 2a str.
2457T]
gi|281602347|gb|ADA75331.1| putative RADC family DNA repair protein [Shigella flexneri 2002017]
Length = 163
Score = 40.3 bits (93), Expect = 0.089, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 71
>gi|284924227|emb|CBG37327.1| putative plasmid-related protein [Escherichia coli 042]
Length = 163
Score = 40.3 bits (93), Expect = 0.093, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 71
>gi|323175748|gb|EFZ61342.1| DNA repair protein RadC family protein [Escherichia coli 1180]
Length = 158
Score = 40.3 bits (93), Expect = 0.094, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALQTLDRHLHEPGVAFTSTRTAREWLILNMAGLEREEFRVLYLNN 66
>gi|261226382|ref|ZP_05940663.1| putative DNA repair protein, RADC family [Escherichia coli O157:H7
str. FRIK2000]
gi|261256423|ref|ZP_05948956.1| hypothetical protein EscherichiacoliO157EcO_11384 [Escherichia coli
O157:H7 str. FRIK966]
Length = 106
Score = 40.3 bits (93), Expect = 0.094, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|320667049|gb|EFX34020.1| DNA repair protein, RadC family [Escherichia coli O157:H7 str.
LSU-61]
Length = 102
Score = 40.3 bits (93), Expect = 0.096, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 66
>gi|301304730|ref|ZP_07210837.1| putative DNA repair protein RadC [Escherichia coli MS 124-1]
gi|300839961|gb|EFK67721.1| putative DNA repair protein RadC [Escherichia coli MS 124-1]
gi|315252324|gb|EFU32292.1| putative DNA repair protein RadC [Escherichia coli MS 85-1]
Length = 158
Score = 40.3 bits (93), Expect = 0.096, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|83649174|ref|YP_437609.1| DNA repair protein [Hahella chejuensis KCTC 2396]
gi|83637217|gb|ABC33184.1| DNA repair protein [Hahella chejuensis KCTC 2396]
Length = 123
Score = 40.3 bits (93), Expect = 0.097, Method: Composition-based stats.
Identities = 3/31 (9%), Positives = 8/31 (25%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + ++ + F F N
Sbjct: 1 MIASPRFAYDYLKLNLAELQHEAFGVLFLDN 31
>gi|327484356|gb|AEA78763.1| DNA repair protein RadC [Vibrio cholerae LMA3894-4]
Length = 138
Score = 40.3 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
V + IL+ + + + + FA F N
Sbjct: 20 VLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEMFAVLFLDN 67
>gi|300815950|ref|ZP_07096174.1| putative DNA repair protein RadC [Escherichia coli MS 107-1]
gi|300531879|gb|EFK52941.1| putative DNA repair protein RadC [Escherichia coli MS 107-1]
Length = 163
Score = 39.9 bits (92), Expect = 0.100, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 71
>gi|281181419|dbj|BAI57749.1| conserved hypothetical protein [Escherichia coli SE15]
Length = 158
Score = 39.9 bits (92), Expect = 0.100, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRAAREWLLLNMAGLEREEFRVLYLNN 66
>gi|301046939|ref|ZP_07194052.1| DNA repair protein RadC domain protein [Escherichia coli MS 185-1]
gi|300301126|gb|EFJ57511.1| DNA repair protein RadC domain protein [Escherichia coli MS 185-1]
Length = 142
Score = 39.9 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|323160906|gb|EFZ46830.1| DNA repair protein RadC family protein [Escherichia coli E128010]
Length = 158
Score = 39.9 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|313648066|gb|EFS12512.1| DNA repair RadC family protein [Shigella flexneri 2a str. 2457T]
Length = 158
Score = 39.9 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 66
>gi|288561648|ref|YP_003429054.1| DNA repair protein radC-like protein [Bacillus pseudofirmus OF4]
gi|288548280|gb|ADC52162.1| DNA repair protein radC-like protein [Bacillus pseudofirmus OF4]
Length = 206
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 5/59 (8%), Positives = 13/59 (22%), Gaps = 1/59 (1%)
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +A +L ++ + +T + F F
Sbjct: 55 GCNEYIAEQLFWTMQLCKKTNEKEADQPFTITSPNDIYECFK-ELRYLQEERFCVAFLN 112
>gi|218697844|ref|YP_002405511.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
55989]
gi|12643227|gb|AAK00479.1| unknown [Shigella flexneri 2a]
gi|218354576|emb|CAV01492.1| putative DNA repair protein; CP4-44 prophage [Escherichia coli
55989]
Length = 148
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 12 ALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNN 56
>gi|83956247|ref|ZP_00964688.1| DNA repair protein [Sulfitobacter sp. NAS-14.1]
gi|83839468|gb|EAP78649.1| DNA repair protein [Sulfitobacter sp. NAS-14.1]
Length = 146
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 5/43 (11%), Positives = 10/43 (23%), Gaps = 1/43 (2%)
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++ IL S + Q + F +
Sbjct: 12 ARDILGRYLSQNPVIGSWQALMDYCALTVRG-PIERFHVLYLD 53
>gi|229589475|ref|YP_002871594.1| putative DNA repair protein [Pseudomonas fluorescens SBW25]
gi|229361341|emb|CAY48211.1| putative DNA repair protein [Pseudomonas fluorescens SBW25]
Length = 164
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 5/33 (15%), Positives = 8/33 (24%)
Query: 112 IKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
LT ++ H + F F
Sbjct: 39 RGPNLTSPGAVASYLKLHLVQQEHEVFGVIFLD 71
>gi|260775892|ref|ZP_05884788.1| DNA repair protein RadC [Vibrio coralliilyticus ATCC BAA-450]
gi|260608308|gb|EEX34477.1| DNA repair protein RadC [Vibrio coralliilyticus ATCC BAA-450]
Length = 224
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 4/39 (10%), Positives = 8/39 (20%)
Query: 107 KANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
L + + H + F + N
Sbjct: 94 YWAARSPNVLNAPNLVKMYCQCHLAHVDREVFGALWLDN 132
>gi|331683582|ref|ZP_08384180.1| putative DNA repair protein [Escherichia coli H299]
gi|331079195|gb|EGI50395.1| putative DNA repair protein [Escherichia coli H299]
Length = 118
Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|323952514|gb|EGB48387.1| RadC family protein DNA repair protein [Escherichia coli H252]
Length = 111
Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|268610725|ref|ZP_06144452.1| DNA repair protein RadC [Ruminococcus flavefaciens FD-1]
Length = 228
Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 3/114 (2%)
Query: 27 DRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINR 86
D+FL +G +L E L L+L ++ A LL+ + + A LL
Sbjct: 9 DKFLTEGGPSLTDREYLTLLLSYCGK-LSPEAAADDLLRVYGSFAAAADADPKLLANTID 67
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAY 140
L + +++ + + N L + + + +
Sbjct: 68 SVDAAVLFRLISRLSAIYVTEEN--GVLRLKSSKDAKLYFSGSFTGITSERMII 119
>gi|66768348|ref|YP_243110.1| putative DNA repair protein RadC [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991850|ref|YP_001903860.1| putative RadC family DNA repair protein [Xanthomonas campestris pv.
campestris str. B100]
gi|66573680|gb|AAY49090.1| putative DNA repair protein RadC [Xanthomonas campestris pv.
campestris str. 8004]
gi|167733610|emb|CAP51815.1| putative RadC family DNA repair protein [Xanthomonas campestris pv.
campestris]
Length = 164
Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 3/28 (10%), Positives = 6/28 (21%)
Query: 119 GQPCLISVERHYPMKNANNFAYCFSINI 146
+ + F F N+
Sbjct: 46 PADVRDYLRLKLVDEPNEVFVVVFMDNL 73
>gi|255292379|dbj|BAH89498.1| DNA repair protein RadC [uncultured bacterium]
Length = 146
Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 5/43 (11%), Positives = 10/43 (23%), Gaps = 1/43 (2%)
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++ IL S + Q + F +
Sbjct: 12 ARDILGRYLSQNPVIGSWQALMDYCALTVRG-PIERFHVLYLD 53
>gi|51598155|ref|YP_072346.1| hypothetical protein YPTB3868 [Yersinia pseudotuberculosis IP
32953]
gi|186897377|ref|YP_001874489.1| DNA repair protein RadC [Yersinia pseudotuberculosis PB1/+]
gi|51591437|emb|CAH23106.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|186700403|gb|ACC91032.1| DNA repair protein RadC [Yersinia pseudotuberculosis PB1/+]
Length = 159
Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 12/45 (26%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIK-KFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L+A+ T + + F + N
Sbjct: 23 ALFLLEAHLREPGTSFTSLGTVSDWLRLRMARLDREVFMVLWLDN 67
>gi|309795803|ref|ZP_07690218.1| DNA repair protein RadC family protein [Escherichia coli MS 145-7]
gi|308120682|gb|EFO57944.1| DNA repair protein RadC family protein [Escherichia coli MS 145-7]
Length = 156
Score = 39.6 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + K + T ++ F + N
Sbjct: 23 RLLEKYQRQPSESFTSTSVTKAWLQLRMAHLEREAFIVMYLDN 65
>gi|290474866|ref|YP_003467746.1| putative CP4-57 prophage; DNA repair protein [Xenorhabdus bovienii
SS-2004]
gi|289174179|emb|CBJ80966.1| putative CP4-57 prophage; DNA repair protein [Xenorhabdus bovienii
SS-2004]
Length = 156
Score = 39.6 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + K + T ++ F + N
Sbjct: 23 RLLEKYQRQPGESFTSTSVTKTWLQLQMAGLEREIFIVLYLDN 65
>gi|159901512|ref|YP_001547758.1| DNA repair protein RadC [Herpetosiphon aurantiacus ATCC 23779]
gi|159894551|gb|ABX07630.1| DNA repair protein RadC [Herpetosiphon aurantiacus ATCC 23779]
Length = 204
Score = 39.6 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 6/73 (8%), Positives = 19/73 (26%), Gaps = 3/73 (4%)
Query: 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVER 128
+ + L + +G+ A+ L+ L + + +T + ++
Sbjct: 36 SWNTLARMSEEELTPL--VGRAHAIRLRTAFAIGHAKLAEAVTGEP-ITTPMQVVALLQA 92
Query: 129 HYPMKNANNFAYC 141
Sbjct: 93 EMSHLEQEELRVI 105
>gi|260866447|ref|YP_003232849.1| putative DNA repair protein [Escherichia coli O111:H- str. 11128]
gi|257762803|dbj|BAI34298.1| putative DNA repair protein [Escherichia coli O111:H- str. 11128]
Length = 158
Score = 39.6 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 22 ALKTLDRHLHEPGVAFTSTRTAREWLILNMAGLEREEFRVLYLNN 66
>gi|331681615|ref|ZP_08382250.1| intergenic-region protein [Escherichia coli H299]
gi|331081157|gb|EGI52320.1| intergenic-region protein [Escherichia coli H299]
Length = 96
Score = 39.6 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + + F + N
Sbjct: 27 ALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNN 71
>gi|241764305|ref|ZP_04762334.1| DNA repair protein RadC [Acidovorax delafieldii 2AN]
gi|241366319|gb|EER60856.1| DNA repair protein RadC [Acidovorax delafieldii 2AN]
Length = 164
Score = 39.6 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 90 RVALELKLVS--VASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
VA + + A + + + + L+ + + FA F
Sbjct: 15 AVAAQHEDWIIQQAIALLERRIFKVGPCLSRPAAVRDYLRLKLVAEPNEVFAVVFLD 71
>gi|331683578|ref|ZP_08384177.1| putative DNA repair protein [Escherichia coli H299]
gi|331079199|gb|EGI50398.1| putative DNA repair protein [Escherichia coli H299]
Length = 110
Score = 39.6 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 5/71 (7%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKN 134
+Q+++ + + + + + + L + T + + +
Sbjct: 1 MRREAMQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLE 60
Query: 135 ANNFAYCFSIN 145
F + N
Sbjct: 61 REEFRVLYLNN 71
>gi|213029140|ref|ZP_03343587.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 129
Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 3/36 (8%), Positives = 9/36 (25%)
Query: 109 NWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + L + ++ + F F
Sbjct: 1 RMNEESALLSPEMTREFLQSQLTGEEREIFLVIFLD 36
>gi|238787658|ref|ZP_04631456.1| DNA repair protein RadC [Yersinia frederiksenii ATCC 33641]
gi|238724445|gb|EEQ16087.1| DNA repair protein RadC [Yersinia frederiksenii ATCC 33641]
Length = 159
Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIK-KFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L+ + T + F + N
Sbjct: 23 ALFLLETHLREPGTSFTSLGTVSDWLRLRMARLEREVFMVLWLDN 67
>gi|215778383|ref|YP_002261523.1| DNA repair protein RadC [Aliivibrio salmonicida LFI1238]
gi|208011428|emb|CAQ81892.1| DNA repair protein RadC [Aliivibrio salmonicida LFI1238]
Length = 154
Score = 39.6 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 6/44 (13%), Positives = 10/44 (22%)
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ I++ LT + K F N
Sbjct: 19 AAAIIETKIRTTPELTTSDLAIEFCTNRLVHKEHEVFGILLLDN 62
>gi|293392460|ref|ZP_06636780.1| DNA repair protein RadC [Serratia odorifera DSM 4582]
gi|291424862|gb|EFE98071.1| DNA repair protein RadC [Serratia odorifera DSM 4582]
Length = 159
Score = 39.6 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 9/45 (20%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L T + H F + N
Sbjct: 23 ALNLLAKQLREPGVAFTSTSVTRDWLRLHLTGLEREIFVVLWLDN 67
>gi|238761834|ref|ZP_04622808.1| DNA repair protein RadC [Yersinia kristensenii ATCC 33638]
gi|238699948|gb|EEP92691.1| DNA repair protein RadC [Yersinia kristensenii ATCC 33638]
Length = 161
Score = 39.6 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 9/45 (20%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L T + H F + N
Sbjct: 23 ALNLLAKQLREPGVAFTSTHVTRDWLRLHLTGLEREVFIVLWLDN 67
>gi|325684339|gb|EGD26508.1| DNA repair protein RadC [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 206
Score = 39.2 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 5/58 (8%), Positives = 12/58 (20%), Gaps = 1/58 (1%)
Query: 88 GKRVALELKLVSVASQRILK-ANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G +L L + L+ + + + F +
Sbjct: 56 GPDCPNDLALTIEVAMDRLRRTDMRRSSDWASSSKIGNYLANKLLGQKQEQFWVLYFD 113
>gi|24373030|ref|NP_717072.1| RadC family DNA repair protein [Shewanella oneidensis MR-1]
gi|24347195|gb|AAN54517.1|AE015589_12 DNA repair protein, RadC family [Shewanella oneidensis MR-1]
Length = 157
Score = 39.2 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 4/47 (8%), Positives = 10/47 (21%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + I+ + Q + + FA
Sbjct: 19 ILETAAGIVAERFVRGDAFCNPQATMDFLRFKLHQHQREVFAVMMLD 65
>gi|296157078|ref|ZP_06839914.1| DNA repair protein RadC [Burkholderia sp. Ch1-1]
gi|295892414|gb|EFG72196.1| DNA repair protein RadC [Burkholderia sp. Ch1-1]
Length = 164
Score = 39.2 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 2/57 (3%), Positives = 9/57 (15%), Gaps = 6/57 (10%)
Query: 94 ELKLVSVASQRILKANWSIKKFLTP------GQPCLISVERHYPMKNANNFAYCFSI 144
++ ++ + + + F F
Sbjct: 15 QISAQQEDWIIQHAITLLEQRVFSSGPCLANPSDVHDYLRLKLATEPNEVFVAIFMD 71
>gi|194469241|ref|ZP_03075225.1| DNA repair protein, RadC family [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205358755|ref|ZP_02658774.2| DNA repair protein, RadC family [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194455605|gb|EDX44444.1| DNA repair protein, RadC family [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205332230|gb|EDZ18994.1| DNA repair protein, RadC family [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 160
Score = 39.2 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 3/30 (10%), Positives = 6/30 (20%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSI 144
T Q ++ F +
Sbjct: 38 AFTSTQAARDWLKLKMAGLEREEFMALYLN 67
>gi|313123429|ref|YP_004033688.1| DNA repair protein [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312279992|gb|ADQ60711.1| DNA repair protein [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 204
Score = 39.2 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 5/58 (8%), Positives = 12/58 (20%), Gaps = 1/58 (1%)
Query: 88 GKRVALELKLVSVASQRILK-ANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G +L L + L+ + + + F +
Sbjct: 54 GPDCPNDLALTIEVAMDRLRRTDMRRSSDWASSSKIGNYLANKLLGQKQEQFWVLYFD 111
>gi|281178374|dbj|BAI54704.1| putative phage DNA repair protein [Escherichia coli SE15]
Length = 156
Score = 39.2 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 5/44 (11%), Positives = 9/44 (20%)
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
++ I+ + L V F N
Sbjct: 21 ARDIISRYYQRGVQLCSPDDVRRCVMVELAPLEHEEFGIILLDN 64
>gi|213161115|ref|ZP_03346825.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213428441|ref|ZP_03361191.1| DNA repair protein RadC [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
Length = 159
Score = 39.2 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 9/45 (20%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L T + + F + N
Sbjct: 23 ALILLACQLREPGASFTSSHAVRDWLRLQLATLDREAFTVLWLDN 67
>gi|241662298|ref|YP_002980658.1| DNA repair protein RadC [Ralstonia pickettii 12D]
gi|240864325|gb|ACS61986.1| DNA repair protein RadC [Ralstonia pickettii 12D]
Length = 164
Score = 39.2 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 3/34 (8%), Positives = 6/34 (17%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L + + F+ F
Sbjct: 38 KAGPMLNSPAAVRDYLHLKLVAEPNEVFSVVFLN 71
>gi|300811346|ref|ZP_07091843.1| DNA repair protein RadC [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497710|gb|EFK32735.1| DNA repair protein RadC [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 204
Score = 39.2 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 5/58 (8%), Positives = 12/58 (20%), Gaps = 1/58 (1%)
Query: 88 GKRVALELKLVSVASQRILK-ANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G +L L + L+ + + + F +
Sbjct: 54 GPDCPNDLALTIEVAMDRLRRTDMRRSSDWASSSKIGNYLANKLLGQKQEQFWVLYFD 111
>gi|167035736|ref|YP_001670967.1| DNA repair protein RadC [Pseudomonas putida GB-1]
gi|166862224|gb|ABZ00632.1| DNA repair protein RadC [Pseudomonas putida GB-1]
Length = 162
Score = 39.2 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 16/48 (33%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+S +Q++ + S + LT + ++ FA
Sbjct: 22 DISQMAQQLAMSRLSKGRALTEPKQVFSHLQTLLQYHEYEVFALLLLD 69
>gi|311281126|ref|YP_003943357.1| DNA repair protein RadC [Enterobacter cloacae SCF1]
gi|308750321|gb|ADO50073.1| DNA repair protein RadC [Enterobacter cloacae SCF1]
Length = 160
Score = 39.2 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 3/30 (10%), Positives = 6/30 (20%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSI 144
T Q ++ F +
Sbjct: 38 AFTSTQAARDWLKLKMAGLEREEFMALYLN 67
>gi|300173737|ref|YP_003772903.1| DNA repair protein [Leuconostoc gasicomitatum LMG 18811]
gi|299888116|emb|CBL92084.1| DNA repair protein [Leuconostoc gasicomitatum LMG 18811]
Length = 203
Score = 39.2 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 9/95 (9%), Positives = 17/95 (17%), Gaps = 3/95 (3%)
Query: 50 LIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKAN 109
KD K L + F + ++ L + + I A
Sbjct: 15 GQNGKDAL---KELRRHFPNDYNLNEMTHDAAEDFIAQNPTQNKALLIGVEIGKHIAMAT 71
Query: 110 WSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +R
Sbjct: 72 RPKLLSAKFSEEIGYYAQRQIGHLPQEQLCVALLD 106
>gi|304395596|ref|ZP_07377479.1| DNA repair protein RadC [Pantoea sp. aB]
gi|304356890|gb|EFM21254.1| DNA repair protein RadC [Pantoea sp. aB]
Length = 155
Score = 38.8 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 4/30 (13%), Positives = 6/30 (20%)
Query: 116 LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
T + + F F N
Sbjct: 34 FTSAALTRDWLRLNLAGLEREVFLVVFLDN 63
>gi|271501414|ref|YP_003334439.1| DNA repair protein RadC [Dickeya dadantii Ech586]
gi|270344969|gb|ACZ77734.1| DNA repair protein RadC [Dickeya dadantii Ech586]
Length = 159
Score = 38.8 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 98 VSVASQRILKANWSIK-KFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + R L+ + T V + + F + N
Sbjct: 19 IIDCAVRTLEKYLRKTGEAFTTSDYAKDWVRLQFANLDREVFTVLYLDN 67
>gi|188025517|ref|ZP_02997537.1| hypothetical protein PROSTU_00686 [Providencia stuartii ATCC 25827]
gi|188025584|ref|ZP_02997572.1| hypothetical protein PROSTU_00936 [Providencia stuartii ATCC 25827]
gi|282600132|ref|ZP_05973133.2| DNA repair protein RadC [Providencia rustigianii DSM 4541]
gi|188022915|gb|EDU60955.1| hypothetical protein PROSTU_00936 [Providencia stuartii ATCC 25827]
gi|188023263|gb|EDU61303.1| hypothetical protein PROSTU_00686 [Providencia stuartii ATCC 25827]
gi|282566538|gb|EFB72073.1| DNA repair protein RadC [Providencia rustigianii DSM 4541]
Length = 166
Score = 38.8 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 3/30 (10%), Positives = 5/30 (16%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSI 144
T Q + F +
Sbjct: 44 AFTSTQNVRDWLRLKMSALEREAFIVLYLN 73
>gi|330807440|ref|YP_004351902.1| Putative DNA repair protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375548|gb|AEA66898.1| Putative DNA repair protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 165
Score = 38.8 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 6/48 (12%), Positives = 15/48 (31%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +Q++ + S + LT + ++ FA
Sbjct: 25 DILQMAQQLAMSRLSKGRALTEPKQVFSHLQTLLQYHEYEVFALLMLD 72
>gi|307129553|ref|YP_003881569.1| DNA repair protein RadC [Dickeya dadantii 3937]
gi|306527082|gb|ADM97012.1| DNA repair protein RadC [Dickeya dadantii 3937]
Length = 203
Score = 38.8 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 5/43 (11%), Positives = 11/43 (25%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
A+++ + + T + FA F
Sbjct: 67 AARQAIDCKMPLGTAFTSASQTQAYLCAKLAGFEREVFAVLFL 109
>gi|320539538|ref|ZP_08039205.1| putative phage DNA repair protein [Serratia symbiotica str. Tucson]
gi|320030391|gb|EFW12403.1| putative phage DNA repair protein [Serratia symbiotica str. Tucson]
Length = 159
Score = 38.8 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIK-KFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L+ + T + F + N
Sbjct: 23 ALFLLETHLREPGTSFTSFGTVSDWLRLLMARLEREVFMVLWLDN 67
>gi|238793077|ref|ZP_04636706.1| DNA repair protein RadC [Yersinia intermedia ATCC 29909]
gi|238727677|gb|EEQ19202.1| DNA repair protein RadC [Yersinia intermedia ATCC 29909]
Length = 161
Score = 38.8 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 9/45 (20%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L T + H F + N
Sbjct: 23 ALNLLAKQLREPGIAFTSTHVTRDWLRLHLTGLEREVFIVLWLDN 67
>gi|293416392|ref|ZP_06659031.1| radC-like protein yeeS [Escherichia coli B185]
gi|291431748|gb|EFF04731.1| radC-like protein yeeS [Escherichia coli B185]
Length = 158
Score = 38.8 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + L + T + + F + N
Sbjct: 22 ALKTLGRHLHEPGVAFTSTHAAREWLILNMAGLEREEFQVLYLNN 66
>gi|89098269|ref|ZP_01171154.1| hypothetical protein B14911_10922 [Bacillus sp. NRRL B-14911]
gi|89087126|gb|EAR66242.1| hypothetical protein B14911_10922 [Bacillus sp. NRRL B-14911]
Length = 228
Score = 38.8 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 8/119 (6%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEIN 85
R+R G+ +++ LI+ K LL T+ ++ + L E+
Sbjct: 25 RERVNYYGDQYAELADLICLII-----GNKAKPEVCNLLSSM-TIKELYNLSIDELIEL- 77
Query: 86 RIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ K+VA + +++I + L + +V+ ++ F
Sbjct: 78 GLTKQVAERFFATILFAKKINSMFMPEVECLRSPEDAYHAVKY-LTNEDQETFVVLALD 135
>gi|56476778|ref|YP_158367.1| RadC family DNA repair protein [Aromatoleum aromaticum EbN1]
gi|56312821|emb|CAI07466.1| DNA repair protein similar to radC-family [Aromatoleum aromaticum
EbN1]
Length = 164
Score = 38.8 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 4/34 (11%), Positives = 7/34 (20%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L + ++ FA F
Sbjct: 38 KAGPSLGSPAAVRDYLRLKLVVEPNEIFAVVFLD 71
>gi|251788567|ref|YP_003003288.1| DNA repair protein RadC [Dickeya zeae Ech1591]
gi|271498985|ref|YP_003332010.1| DNA repair protein RadC [Dickeya dadantii Ech586]
gi|247537188|gb|ACT05809.1| DNA repair protein RadC [Dickeya zeae Ech1591]
gi|270342540|gb|ACZ75305.1| DNA repair protein RadC [Dickeya dadantii Ech586]
Length = 157
Score = 38.8 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIK-KFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+QR+L+ + + T + ++ H F F N
Sbjct: 21 AQRLLERHLRQPGEPFTASSYTRMWLQLHLAPLEREVFMVLFLDN 65
>gi|320352278|ref|YP_004193617.1| DNA repair protein RadC [Desulfobulbus propionicus DSM 2032]
gi|320120780|gb|ADW16326.1| DNA repair protein RadC [Desulfobulbus propionicus DSM 2032]
Length = 159
Score = 38.8 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 6/48 (12%), Positives = 14/48 (29%)
Query: 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ A++R+ +T ++ +FA F
Sbjct: 18 TILAAARRLSSCQLRRGAAITSPLAAREAIGLKLAGLEHESFACLFLD 65
>gi|5825428|gb|AAD53243.1|AF124649_1 DNA repair protein RadC [Enterococcus faecalis]
Length = 103
Score = 38.8 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 6/52 (11%), Positives = 16/52 (30%)
Query: 93 LELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+EL+ RI +++ +T Q + + + +
Sbjct: 1 IELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQEMKGLQQEHLICIYLN 52
>gi|83648279|ref|YP_436714.1| DNA repair protein [Hahella chejuensis KCTC 2396]
gi|83636322|gb|ABC32289.1| DNA repair protein [Hahella chejuensis KCTC 2396]
Length = 183
Score = 38.8 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 76 APLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPCLISVERHYPMKN 134
A LHL + L+ +V A++R L + + + H +
Sbjct: 9 ATLHLNRRTGEFTLSAPLDSDIVLKAAKRALAQRFKRHSCHMDDPGKVKEYLMMHLAPEP 68
Query: 135 ANNFAYCFSI 144
F F
Sbjct: 69 RETFVGLFLD 78
>gi|127512189|ref|YP_001093386.1| DNA repair protein RadC [Shewanella loihica PV-4]
gi|126637484|gb|ABO23127.1| DNA repair protein RadC [Shewanella loihica PV-4]
Length = 157
Score = 38.4 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 2/47 (4%), Positives = 7/47 (14%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + I+ + + F
Sbjct: 19 ILETAAGIVAERFVRGDAFCNPDATRDFLRFKLHQHQREVFGVMMLD 65
>gi|238785016|ref|ZP_04629013.1| DNA repair protein RadC [Yersinia bercovieri ATCC 43970]
gi|238714057|gb|EEQ06072.1| DNA repair protein RadC [Yersinia bercovieri ATCC 43970]
Length = 162
Score = 38.4 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 9/45 (20%), Gaps = 1/45 (2%)
Query: 102 SQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L+ T + F F N
Sbjct: 24 ALTLLEQQLREPGAAFTSTTTVRDWLRLQKSTLAREEFTVLFLDN 68
>gi|320195796|gb|EFW70421.1| DNA repair protein RadC [Escherichia coli WV_060327]
Length = 150
Score = 38.4 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 5/44 (11%), Positives = 9/44 (20%)
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
++ I+ + L V F N
Sbjct: 15 ARDIISRYYQRGVQLCSPDDVRRCVMVELAPLEHEEFGIILLDN 58
>gi|186894518|ref|YP_001871630.1| DNA repair protein RadC [Yersinia pseudotuberculosis PB1/+]
gi|186697544|gb|ACC88173.1| DNA repair protein RadC [Yersinia pseudotuberculosis PB1/+]
Length = 156
Score = 38.4 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 3/43 (6%), Positives = 9/43 (20%)
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + K + ++ F + N
Sbjct: 23 RLLEKYQRQPSEPFISTSVTKTRLQLQMAHLEREVFVVMYLDN 65
>gi|107102082|ref|ZP_01366000.1| hypothetical protein PaerPA_01003131 [Pseudomonas aeruginosa PACS2]
gi|134095214|ref|YP_001100289.1| RadC family DNA repair protein [Herminiimonas arsenicoxydans]
gi|133739117|emb|CAL62166.1| putative DNA repair protein RadC [Herminiimonas arsenicoxydans]
Length = 164
Score = 38.4 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 90 RVALELKLVS--VASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
VA + + A + + + + L+ + + FA F
Sbjct: 15 AVAAQREDWIIQQAIALLERRIFKVGPCLSRPAAVRDYLRLKLVAEPNEVFAIVFLD 71
>gi|238750426|ref|ZP_04611927.1| DNA repair protein RadC [Yersinia rohdei ATCC 43380]
gi|238711357|gb|EEQ03574.1| DNA repair protein RadC [Yersinia rohdei ATCC 43380]
Length = 156
Score = 38.4 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 11/43 (25%)
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + K + T ++ + F + N
Sbjct: 23 RLLEKYQRQPSESFTSTSYTKTWLQLQMAHQEREAFIVMYLDN 65
>gi|145299092|ref|YP_001141933.1| RadC family DNA repair protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851864|gb|ABO90185.1| DNA repair protein, RadC family [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 163
Score = 38.4 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 5/66 (7%), Positives = 17/66 (25%), Gaps = 6/66 (9%)
Query: 86 RIGKRVALELKLVS------VASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
+ + + + I+ ++ L+ + + + + FA
Sbjct: 6 GLDPKNRIACMFTEREKQIIALAHSIIARRFTRLDLLSSPEMVVEFLTTRFATHEHETFA 65
Query: 140 YCFSIN 145
N
Sbjct: 66 MILLDN 71
>gi|16130559|ref|NP_417131.1| CP4-57 prophage; predicted DNA repair protein [Escherichia coli
str. K-12 substr. MG1655]
gi|89109442|ref|AP_003222.1| predicted DNA repair protein [Escherichia coli str. K-12 substr.
W3110]
gi|170082243|ref|YP_001731563.1| CP4-57 prophage; DNA repair protein [Escherichia coli str. K-12
substr. DH10B]
gi|238901798|ref|YP_002927594.1| CP4-57 prophage; putative DNA repair protein [Escherichia coli
BW2952]
gi|1723637|sp|P52140|YFJY_ECOLI RecName: Full=UPF0758 protein yfjY
gi|1033138|gb|AAA79812.1| ORF_o160 [Escherichia coli str. K-12 substr. MG1655]
gi|1788997|gb|AAC75692.1| CP4-57 prophage; predicted DNA repair protein [Escherichia coli
str. K-12 substr. MG1655]
gi|1800034|dbj|BAA16512.1| predicted DNA repair protein [Escherichia coli str. K12 substr.
W3110]
gi|169890078|gb|ACB03785.1| CP4-57 prophage; predicted DNA repair protein [Escherichia coli
str. K-12 substr. DH10B]
gi|238860625|gb|ACR62623.1| CP4-57 prophage; predicted DNA repair protein [Escherichia coli
BW2952]
gi|260448288|gb|ACX38710.1| DNA repair protein RadC [Escherichia coli DH1]
gi|315137260|dbj|BAJ44419.1| CP4-57 prophage; putative DNA repair protein [Escherichia coli DH1]
Length = 160
Score = 38.4 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 3/30 (10%), Positives = 6/30 (20%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSI 144
T Q ++ F +
Sbjct: 38 AFTSTQAARDWLKLKMAGLEREEFMMLYLN 67
>gi|300869667|ref|YP_003784538.1| putative DNA repair protein RadC [Brachyspira pilosicoli 95/1000]
gi|300687366|gb|ADK30037.1| putative DNA repair protein, RadC [Brachyspira pilosicoli 95/1000]
Length = 230
Score = 38.4 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 3/113 (2%)
Query: 35 NALA---YYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRV 91
+L+ EI+ +L I I L +F L + + L +I I +
Sbjct: 14 ESLSLKKEKEIVSYLLSNGISLNTANIITDKLYYKFHNLYNIVNSDEKELLKIKGITSKK 73
Query: 92 ALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
LK + + + L + + + + + F+
Sbjct: 74 VFILKNIPMLLECFLINSLKSDSLDLKKKDLINYLIIKFGRLKFEAFSIICLD 126
>gi|77164149|ref|YP_342674.1| DNA repair protein RadC [Nitrosococcus oceani ATCC 19707]
gi|254436177|ref|ZP_05049684.1| DNA repair protein RadC [Nitrosococcus oceani AFC27]
gi|76882463|gb|ABA57144.1| DNA repair protein RadC [Nitrosococcus oceani ATCC 19707]
gi|207089288|gb|EDZ66560.1| DNA repair protein RadC [Nitrosococcus oceani AFC27]
Length = 171
Score = 38.4 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 5/50 (10%), Positives = 12/50 (24%)
Query: 96 KLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + +L L + + A F + N
Sbjct: 30 QSLLELAFAVLHDLHQPGVELPSPNHTRDFLRMLLAERKAEVFGCLYLDN 79
>gi|90408646|ref|ZP_01216799.1| DNA repair protein RadC [Psychromonas sp. CNPT3]
gi|90310253|gb|EAS38385.1| DNA repair protein RadC [Psychromonas sp. CNPT3]
Length = 157
Score = 38.0 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 5/49 (10%), Positives = 12/49 (24%)
Query: 96 KLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + I+ + + T + + FA F
Sbjct: 17 HQILEKASEIIASKFIDGIAFTDVKTTKEYLTFKLAHHKREVFAVMFLN 65
>gi|317407831|gb|EFV87757.1| hypothetical protein HMPREF0005_03171 [Achromobacter xylosoxidans
C54]
Length = 165
Score = 38.0 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 5/68 (7%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNAN 136
+++E+ + + + + A+ L+ + + + + + + +
Sbjct: 7 DAPVVREVGGLYRAATPQ--ELLRAAAHQLEGALNRRLPVAKPSAAIDYIVTRLALSDVE 64
Query: 137 NFAYCFSI 144
F F
Sbjct: 65 VFGVMFLD 72
>gi|317493871|ref|ZP_07952288.1| DNA repair protein RadC [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918198|gb|EFV39540.1| DNA repair protein RadC [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 159
Score = 38.0 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 2/30 (6%), Positives = 4/30 (13%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSI 144
Q + F +
Sbjct: 37 AFISTQAARDWLTLKMAGLEREEFMVLYLN 66
>gi|191165826|ref|ZP_03027664.1| DNA repair protein RadC [Escherichia coli B7A]
gi|190904150|gb|EDV63861.1| DNA repair protein RadC [Escherichia coli B7A]
Length = 157
Score = 38.0 bits (87), Expect = 0.46, Method: Composition-based stats.
Identities = 5/50 (10%), Positives = 16/50 (32%)
Query: 96 KLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+++ A + + K + + ++ H + F + N
Sbjct: 16 RVIRRAMRLLEKYQRNPGESFLSSDATKTWLQLHLARQEREMFVVLYLDN 65
>gi|117620845|ref|YP_855621.1| putative DNA repair protein RadC [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562252|gb|ABK39200.1| putative DNA repair protein RadC [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 176
Score = 38.0 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 17/45 (37%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+Q + + + + +T +++ ++ FA F N
Sbjct: 40 IAQAVARQKLAKGEAITDKHVAHQALQGLLQTRDREVFAALFLDN 84
>gi|227883870|ref|ZP_04001675.1| DNA repair protein RadC [Escherichia coli 83972]
gi|300984866|ref|ZP_07177154.1| putative DNA repair protein RadC [Escherichia coli MS 45-1]
gi|307312940|ref|ZP_07592568.1| DNA repair protein RadC [Escherichia coli W]
gi|227839148|gb|EEJ49614.1| DNA repair protein RadC [Escherichia coli 83972]
gi|300408295|gb|EFJ91833.1| putative DNA repair protein RadC [Escherichia coli MS 45-1]
gi|306907108|gb|EFN37615.1| DNA repair protein RadC [Escherichia coli W]
gi|307555795|gb|ADN48570.1| conserved phage-associated protein [Escherichia coli ABU 83972]
gi|315063591|gb|ADT77918.1| DNA Repair Protein [Escherichia coli W]
gi|315292951|gb|EFU52303.1| putative DNA repair protein RadC [Escherichia coli MS 153-1]
gi|323380328|gb|ADX52596.1| DNA repair protein RadC [Escherichia coli KO11]
Length = 157
Score = 38.0 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 5/50 (10%), Positives = 16/50 (32%)
Query: 96 KLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+++ A + + K + + ++ H + F + N
Sbjct: 16 RVIRRAMRLLEKYQRNPGESFLSSDATKTWLQLHLARQEREMFVVLYLDN 65
>gi|297183088|gb|ADI19232.1| glucosamine 6-phosphate synthetase, contains amidotransferase and
phosphosugar isomerase domains [uncultured delta
proteobacterium HF0200_14D13]
Length = 604
Score = 37.6 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 16/118 (13%)
Query: 23 NRLRDRFLQKGEN--ALAYYEILELILFRLIPR-KDTKSIAKALLKRFATLGGVFGAPLH 79
RLR+R +Q G +L E++ +L + +D + ++ L G+ H
Sbjct: 107 QRLRERLIQDGFEFRSLTDSEVISNLLENAFAQVQDVEQAFQSTLDELEGTFGLVMISSH 166
Query: 80 LLQEI----------NRIGKRV---ALELKLVSVASQRILKANWSIKKFLTPGQPCLI 124
+ I +G+ ++ ++R L Q +
Sbjct: 167 DPERIYAAKRESPLMVGLGEGANYIGSDINAFLEYTRRAWVLEDGEYAVLDREQVIIR 224
>gi|254516157|ref|ZP_05128217.1| DNA repair protein RadC [gamma proteobacterium NOR5-3]
gi|219675879|gb|EED32245.1| DNA repair protein RadC [gamma proteobacterium NOR5-3]
Length = 132
Score = 37.6 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 3/39 (7%), Positives = 9/39 (23%)
Query: 106 LKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++ + + H ++ F F
Sbjct: 1 MERRVRNTQAFESPSAVKQFCQLHIAGESDEWFCCLFLD 39
>gi|293373275|ref|ZP_06619634.1| DNA repair protein RadC [Bacteroides ovatus SD CMC 3f]
gi|292631760|gb|EFF50379.1| DNA repair protein RadC [Bacteroides ovatus SD CMC 3f]
Length = 202
Score = 37.6 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 2/58 (3%), Positives = 7/58 (12%), Gaps = 1/58 (1%)
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + +R + + F
Sbjct: 53 MTPGKRNLVMAGVELYKRCNSHKNQR-PVIRQSTDIFDYMHPVMGDNKTEECWVIFMN 109
>gi|261820684|ref|YP_003258790.1| DNA repair protein RadC [Pectobacterium wasabiae WPP163]
gi|261604697|gb|ACX87183.1| DNA repair protein RadC [Pectobacterium wasabiae WPP163]
Length = 157
Score = 37.6 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 2/35 (5%), Positives = 6/35 (17%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + F + N
Sbjct: 31 KNARQFKTSEDTKSWLMLELSNLEREAFMVLYLNN 65
>gi|20095114|ref|NP_614961.1| Hef nuclease [Methanopyrus kandleri AV19]
gi|19888409|gb|AAM02891.1| ERCC4-like helicase-nuclease [Methanopyrus kandleri AV19]
Length = 741
Score = 37.6 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 41 EILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
E+L I +A+ LL F ++G V A L+ + IG+R A E++
Sbjct: 687 EMLSCIPGVGP------ELARRLLDEFGSIGDVVNASPSELKRVKGIGERKAREIR 736
>gi|227822698|ref|YP_002826670.1| putative transcriptional regulator, AraC family [Sinorhizobium
fredii NGR234]
gi|227341699|gb|ACP25917.1| putative transcriptional regulator, AraC family [Sinorhizobium
fredii NGR234]
Length = 323
Score = 37.6 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 39/125 (31%), Gaps = 8/125 (6%)
Query: 26 RDRFLQKG-----ENALAYYEILELILFRLIPRKDTKSIAKALLKRFA-TLGGVFGAPLH 79
R+RF+ G +L +++ ++ R +++ + T G + P
Sbjct: 150 RERFVIDGKRITTGGSLPTLDLMLELIRRAHGYSLALEVSRLFIYEQERTRGDLLQMPAI 209
Query: 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139
I + RV +KL+ ++ L ++ + + ++
Sbjct: 210 GNMRI--LDARVGAAVKLMEETVEQPLTLQRLARRVGVSARHLQDLFRETMRVAPHEHYL 267
Query: 140 YCFSI 144
Sbjct: 268 ALRLN 272
>gi|212224218|ref|YP_002307454.1| Hef nuclease [Thermococcus onnurineus NA1]
gi|212009175|gb|ACJ16557.1| helicase-associated endonuclease for fork-structured DNA
[Thermococcus onnurineus NA1]
Length = 789
Score = 37.6 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R ++ L+ + AL E LI+ +P ++AK LLK F + VF A LQ
Sbjct: 707 ERKKEVRLRSEKKALTLAERQRLIVE-GLPNVSA-TLAKRLLKHFGNVERVFTATEEELQ 764
Query: 83 EINRIGKRVALELK 96
E+ IG + A E++
Sbjct: 765 EVEGIGPKKAREIR 778
>gi|301021305|ref|ZP_07185334.1| putative DNA repair protein RadC [Escherichia coli MS 69-1]
gi|300398156|gb|EFJ81694.1| putative DNA repair protein RadC [Escherichia coli MS 69-1]
Length = 157
Score = 37.3 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 5/50 (10%), Positives = 16/50 (32%)
Query: 96 KLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+++ A + + K + + ++ H + F + N
Sbjct: 16 RVIRRAMRLLEKYQRNPGESFLSSDSTKTWLQLHLARQEREMFVVLYLDN 65
>gi|56459745|ref|YP_155026.1| RadC family protein [Idiomarina loihiensis L2TR]
gi|56178755|gb|AAV81477.1| RadC family protein [Idiomarina loihiensis L2TR]
Length = 158
Score = 37.3 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ +IL+ + + F+ F
Sbjct: 24 ASQILEERHLRGQEPYNPNVIKDFLTYKLAHYEREVFSIIFLD 66
>gi|251788764|ref|YP_003003485.1| DNA repair protein RadC [Dickeya zeae Ech1591]
gi|247537385|gb|ACT06006.1| DNA repair protein RadC [Dickeya zeae Ech1591]
Length = 169
Score = 37.3 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 5/43 (11%), Positives = 11/43 (25%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
A+++ + + T + FA F
Sbjct: 33 AARQAIDCKMPLGTEFTSASQTQAYLCAKLAGFEREVFAVLFL 75
>gi|57640956|ref|YP_183434.1| Hef nuclease [Thermococcus kodakarensis KOD1]
gi|57159280|dbj|BAD85210.1| helicase-associated endonuclease for fork-structured DNA
[Thermococcus kodakarensis KOD1]
Length = 804
Score = 37.3 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R ++ L+ + AL E LI+ +P ++AK LLK F + VF A L+
Sbjct: 725 ERKKEVRLRSEKKALTLAERQRLIVE-GLPNVSA-TLAKRLLKHFGNVERVFTATEEELK 782
Query: 83 EINRIGKRVALELK 96
E+ IG + A E++
Sbjct: 783 EVEGIGPKKAREIR 796
>gi|227892639|ref|ZP_04010444.1| DNA repair protein RadC [Lactobacillus ultunensis DSM 16047]
gi|227865510|gb|EEJ72931.1| DNA repair protein RadC [Lactobacillus ultunensis DSM 16047]
Length = 212
Score = 37.3 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 6/51 (11%), Positives = 10/51 (19%)
Query: 95 LKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
R+ A+ K LT + + N
Sbjct: 70 AIAAEEVFDRLRMASPKRKAVLTSSVEVGNYLADKLVGHKQEELWALYIDN 120
>gi|145631180|ref|ZP_01786954.1| putative DNA repair radC-like protein [Haemophilus influenzae
R3021]
gi|144983278|gb|EDJ90769.1| putative DNA repair radC-like protein [Haemophilus influenzae
R3021]
Length = 156
Score = 37.3 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 4/29 (13%), Positives = 7/29 (24%)
Query: 116 LTPGQPCLISVERHYPMKNANNFAYCFSI 144
T + + + NF F
Sbjct: 35 FTAPSIAKLYFQTIIGNEERENFVVLFLD 63
>gi|68248652|ref|YP_247764.1| putative DNA repair radC-like protein [Haemophilus influenzae
86-028NP]
gi|68056851|gb|AAX87104.1| putative DNA repair radC-like protein [Haemophilus influenzae
86-028NP]
gi|309750579|gb|ADO80563.1| putative DNA repair protein [Haemophilus influenzae R2866]
Length = 156
Score = 37.3 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 4/29 (13%), Positives = 7/29 (24%)
Query: 116 LTPGQPCLISVERHYPMKNANNFAYCFSI 144
T + + + NF F
Sbjct: 35 FTEPSIAKLYFQTIIGNEERENFVVLFLD 63
>gi|325956489|ref|YP_004291901.1| DNA repair protein RadC [Lactobacillus acidophilus 30SC]
gi|325333054|gb|ADZ06962.1| DNA repair protein RadC [Lactobacillus acidophilus 30SC]
gi|327183317|gb|AEA31764.1| DNA repair protein RadC [Lactobacillus amylovorus GRL 1118]
Length = 207
Score = 37.3 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 7/59 (11%), Positives = 16/59 (27%), Gaps = 1/59 (1%)
Query: 88 GKRVALELKLVSVASQRILK-ANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
G + ++ + + L+ A+ K LT + + N
Sbjct: 57 GPDCSDDIAIAAEEVLDRLRLASPKRKAVLTSSVEVGNYLADKLVGHKQEELWALYIDN 115
>gi|301168693|emb|CBW28284.1| putative DNA repair radC-like protein [Haemophilus influenzae
10810]
Length = 156
Score = 37.3 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 4/29 (13%), Positives = 7/29 (24%)
Query: 116 LTPGQPCLISVERHYPMKNANNFAYCFSI 144
T + + + NF F
Sbjct: 35 FTEPSIAKLYFQTIIGNEERENFVVLFLD 63
>gi|255531337|ref|YP_003091709.1| DNA protecting protein DprA [Pedobacter heparinus DSM 2366]
gi|255344321|gb|ACU03647.1| DNA protecting protein DprA [Pedobacter heparinus DSM 2366]
Length = 363
Score = 37.3 bits (85), Expect = 0.81, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 22/85 (25%)
Query: 59 IAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTP 118
IA+ LL +F + +F A + L EI+ IG+ VA ++
Sbjct: 19 IARNLLDQFGSAEAIFKADKYQLMEISGIGEVVATQILNH-------------------- 58
Query: 119 GQPCLISVERHYPMKNANNFAYCFS 143
E+ + F
Sbjct: 59 --DVFEIAEKQLAFIKKHRIQVLFY 81
>gi|145639535|ref|ZP_01795139.1| putative DNA repair radC-like protein [Haemophilus influenzae
PittII]
gi|145271326|gb|EDK11239.1| putative DNA repair radC-like protein [Haemophilus influenzae
PittII]
Length = 156
Score = 37.3 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 4/29 (13%), Positives = 7/29 (24%)
Query: 116 LTPGQPCLISVERHYPMKNANNFAYCFSI 144
T + + + NF F
Sbjct: 35 FTEPSIAKLYFQTIIGNEERENFVVLFLD 63
>gi|330830833|ref|YP_004393785.1| putative DNA repair protein RadC [Aeromonas veronii B565]
gi|328805969|gb|AEB51168.1| Putative DNA repair protein RadC [Aeromonas veronii B565]
Length = 93
Score = 36.9 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+Q I + + +T +++ ++ FA F N
Sbjct: 29 IAQAIARQKLGKGEAITDKHLAHQALQGLLQTRDREVFAALFLDN 73
>gi|301155839|emb|CBW15307.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
Length = 156
Score = 36.9 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 4/29 (13%), Positives = 7/29 (24%)
Query: 116 LTPGQPCLISVERHYPMKNANNFAYCFSI 144
T + + + NF F
Sbjct: 35 FTAPSIAKLYFQTIIGNEERENFVVLFLD 63
>gi|14591755|ref|NP_143722.1| Hef nuclease [Pyrococcus horikoshii OT3]
Length = 748
Score = 36.9 bits (84), Expect = 0.87, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+ ++ + AL E +I+ +P T ++A+ LL+ F ++ VF A + L
Sbjct: 666 ERKREVRIRGEKKALTLAERQRMIVES-LPNVST-TLARRLLRHFGSVEKVFTASVPELM 723
Query: 83 EINRIGKRVALELK 96
++ IG+++A E++
Sbjct: 724 KVEGIGEKIAREIR 737
>gi|146310139|ref|YP_001175213.1| DNA repair protein RadC [Enterobacter sp. 638]
gi|145317015|gb|ABP59162.1| DNA repair protein RadC [Enterobacter sp. 638]
Length = 157
Score = 36.9 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + K + T ++ F + N
Sbjct: 23 RLLDKYQRQPGEAFTSTVFTKTWLQLQMANLEREVFIVMYLDN 65
>gi|218891377|ref|YP_002440244.1| RadC family DNA repair protein [Pseudomonas aeruginosa LESB58]
gi|218771603|emb|CAW27376.1| RadC family DNA repair protein [Pseudomonas aeruginosa LESB58]
Length = 164
Score = 36.9 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 4/34 (11%), Positives = 6/34 (17%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L + + FA F
Sbjct: 38 KKGPSLERPAAVKDYLRLKLAAEPNEVFAIVFLN 71
>gi|326434550|gb|EGD80120.1| hypothetical protein PTSG_10394 [Salpingoeca sp. ATCC 50818]
Length = 1329
Score = 36.9 bits (84), Expect = 0.96, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 23 NRLRDRFLQKGENALAYYEILELI-----LFRLIPRKDTKSIAKALLKR 66
+RLR R + A+ L LI + R P +++ LL R
Sbjct: 599 DRLRQRLIVADLAAVLDGNALALINEDAGIGRGNPGSSIVILSRQLLTR 647
>gi|108804996|ref|YP_644933.1| DNA integrity scanning protein DisA [Rubrobacter xylanophilus DSM
9941]
gi|108766239|gb|ABG05121.1| protein of unknown function DUF147 [Rubrobacter xylanophilus DSM
9941]
Length = 361
Score = 36.9 bits (84), Expect = 0.96, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 26 RDRFLQKGENALAYYEILELILFRLIPRKD-------------------TKSIAKALLKR 66
R R Q L+ ++ +L + + +A+ L++
Sbjct: 256 RKRLSQLSPEQLSDPVVITELLGYGSVGQTEDFLLKPRGYRQLAQVPRLPRKVAENLIRE 315
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSV 100
F +L G+ A L E+ +G+ A +
Sbjct: 316 FGSLEGLLEASEAELDEVEGVGQARARAIHRGLE 349
>gi|331650414|ref|ZP_08351486.1| putative DNA repair protein [Escherichia coli M605]
gi|331040808|gb|EGI12966.1| putative DNA repair protein [Escherichia coli M605]
Length = 157
Score = 36.9 bits (84), Expect = 0.97, Method: Composition-based stats.
Identities = 6/54 (11%), Positives = 17/54 (31%)
Query: 92 ALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
E +++ A + + K + + ++ H + F + N
Sbjct: 12 VSEQRVIRRAMRLLEKYQRNPGESFLSTDATKTWLQLHLARQEREMFVVLYLDN 65
>gi|114330110|ref|YP_746332.1| DNA repair protein RadC [Nitrosomonas eutropha C91]
gi|114307124|gb|ABI58367.1| DNA repair protein RadC [Nitrosomonas eutropha C91]
Length = 167
Score = 36.9 bits (84), Expect = 0.98, Method: Composition-based stats.
Identities = 3/34 (8%), Positives = 6/34 (17%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L + + + F F
Sbjct: 40 KAGPTLDGPKAVRDYLRLKLMAEPNEVFVAVFLN 73
>gi|163855806|ref|YP_001630104.1| putative DNA repair protein RadC [Bordetella petrii DSM 12804]
gi|163259534|emb|CAP41835.1| putative DNA repair protein RadC [Bordetella petrii]
Length = 148
Score = 36.9 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 4/31 (12%), Positives = 7/31 (22%)
Query: 114 KFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L+ + + FA F
Sbjct: 41 PCLSGPAAVRDYLRLKLVAEPNEVFAAVFLD 71
>gi|209947531|ref|YP_002291028.1| putative DNA repair-like protein [Haemophilus influenzae]
gi|51507273|emb|CAF29022.1| putative DNA repair-like protein [Haemophilus influenzae]
Length = 156
Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 4/29 (13%), Positives = 7/29 (24%)
Query: 116 LTPGQPCLISVERHYPMKNANNFAYCFSI 144
T + + + NF F
Sbjct: 35 FTEPSIAKLYFQTIIGNEERENFVVLFLD 63
>gi|104773814|ref|YP_618794.1| DNA repair protein RadC [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513820|ref|YP_812726.1| DNA repair protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
gi|103422895|emb|CAI97557.1| DNA repair protein RadC [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116093135|gb|ABJ58288.1| DNA repair protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
gi|325125478|gb|ADY84808.1| DNA repair protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 204
Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 5/58 (8%), Positives = 12/58 (20%), Gaps = 1/58 (1%)
Query: 88 GKRVALELKLVSVASQRILK-ANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G +L L + L+ + + + F +
Sbjct: 54 GPDCPNDLSLTIEVAMDRLRRTDMRRSSDWAGSSKIGNYLANKLLGQKQEQFWVLYFD 111
>gi|15893201|ref|NP_360915.1| putative DNA repair protein (RadC) [Rickettsia conorii str. Malish
7]
gi|15620416|gb|AAL03816.1| DNA repair protein (RadC)-like protein [Rickettsia conorii str.
Malish 7]
Length = 122
Score = 36.9 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 2/44 (4%)
Query: 106 LKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI--NII 147
+K K + ++ + F F NI+
Sbjct: 1 MKQKIINKNINASWSSWIDYLKVNMGNMRLEQFRILFLNKKNIL 44
>gi|157829113|ref|YP_001495355.1| hypothetical protein A1G_07030 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933837|ref|YP_001650626.1| DNA repair protein [Rickettsia rickettsii str. Iowa]
gi|157801594|gb|ABV76847.1| hypothetical protein A1G_07030 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908924|gb|ABY73220.1| DNA repair protein [Rickettsia rickettsii str. Iowa]
Length = 122
Score = 36.9 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 2/44 (4%)
Query: 106 LKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI--NII 147
+K K + ++ + F F NI+
Sbjct: 1 MKQKIINKNINASWSSWIDYLKVNMGNMRLEQFRILFLNKKNIL 44
>gi|34581128|ref|ZP_00142608.1| hypothetical DNA repair protein (RadC) [Rickettsia sibirica 246]
gi|28262513|gb|EAA26017.1| hypothetical DNA repair protein (RadC) [Rickettsia sibirica 246]
Length = 122
Score = 36.9 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 2/44 (4%)
Query: 106 LKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI--NII 147
+K K + ++ + F F NI+
Sbjct: 1 MKQKIINKNINASWSSWIDYLKVNMGNMRLEQFRILFLNKKNIL 44
>gi|317494142|ref|ZP_07952558.1| DNA repair protein RadC [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917915|gb|EFV39258.1| DNA repair protein RadC [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 159
Score = 36.5 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 7/57 (12%), Positives = 14/57 (24%)
Query: 89 KRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ A + + A + + T + H M+ F N
Sbjct: 11 ELTASAQQTIREALTLLERQLREPGASFTSSSSVRDWLRLHLTMEEREAFVLLLLDN 67
>gi|114326624|ref|YP_743782.1| DNA repair protein RadC [Nitrosomonas eutropha C91]
gi|114309563|gb|ABI60804.1| DNA repair protein RadC [Nitrosomonas eutropha C91]
Length = 173
Score = 36.5 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 5/57 (8%), Positives = 18/57 (31%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G+ +++ A++ ++ + +T + + F+ F
Sbjct: 24 GRYTVASDEMIFTATRAAIERKYPANTAMTKPEIAADYFKNKLNGFEHEVFSIIFLN 80
>gi|121593658|ref|YP_985554.1| DNA repair protein RadC [Acidovorax sp. JS42]
gi|121593791|ref|YP_985687.1| DNA repair protein RadC [Acidovorax sp. JS42]
gi|120605738|gb|ABM41478.1| DNA repair protein RadC [Acidovorax sp. JS42]
gi|120605871|gb|ABM41611.1| DNA repair protein RadC [Acidovorax sp. JS42]
Length = 164
Score = 36.5 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 6/57 (10%), Positives = 15/57 (26%), Gaps = 2/57 (3%)
Query: 90 RVALELKLVS--VASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+A + + A + + + L+ + + FA F
Sbjct: 15 AIAAQHEDWIIQQAIVLLERRIFKAGPCLSRPAAVRDYLRLKLVAEPNEIFAAVFLD 71
>gi|91784617|ref|YP_559823.1| DNA repair protein RadC [Burkholderia xenovorans LB400]
gi|40019185|emb|CAE92909.1| putative DNA repair protein [Pseudomonas putida]
gi|91688571|gb|ABE31771.1| DNA repair protein RadC [Burkholderia xenovorans LB400]
Length = 164
Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 4/31 (12%), Positives = 7/31 (22%)
Query: 114 KFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L+ + + FA F
Sbjct: 41 PCLSGPAAVRDYLRLKLVAEPNEVFAAVFLD 71
>gi|58337108|ref|YP_193693.1| DNA repair protein [Lactobacillus acidophilus NCFM]
gi|227903680|ref|ZP_04021485.1| DNA repair protein [Lactobacillus acidophilus ATCC 4796]
gi|58254425|gb|AAV42662.1| DNA repair protein [Lactobacillus acidophilus NCFM]
gi|227868567|gb|EEJ75988.1| DNA repair protein [Lactobacillus acidophilus ATCC 4796]
Length = 207
Score = 36.5 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 7/59 (11%), Positives = 16/59 (27%), Gaps = 1/59 (1%)
Query: 88 GKRVALELKLVSVASQRILK-ANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
G + ++ + + L+ A+ K LT + + N
Sbjct: 57 GPDCSSDIAIAAEELLDRLRMASPKRKTALTSSVELGTYLADKLAGHKQEELWALYIDN 115
>gi|254173751|ref|ZP_04880423.1| Type III restriction enzyme, res subunit family [Thermococcus sp.
AM4]
gi|214032443|gb|EEB73273.1| Type III restriction enzyme, res subunit family [Thermococcus sp.
AM4]
Length = 807
Score = 36.5 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R ++ L+ + AL E LI+ +P + ++AK LLK F + VF A L+
Sbjct: 724 ERKKEVRLRGEKKALTLAERQRLIVE-GLPNVSS-TLAKRLLKHFGNVERVFTATEEELK 781
Query: 83 EINRIGKRVALELK 96
E+ IG + A E++
Sbjct: 782 EVEGIGPKKAREIR 795
>gi|83648347|ref|YP_436782.1| DNA repair protein [Hahella chejuensis KCTC 2396]
gi|83636390|gb|ABC32357.1| DNA repair protein [Hahella chejuensis KCTC 2396]
Length = 183
Score = 36.5 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 1/45 (2%)
Query: 101 ASQRILKANWSIKKF-LTPGQPCLISVERHYPMKNANNFAYCFSI 144
A++R L + + + H + F F
Sbjct: 34 AAKRALAQRFKRHSCNMDDPGKVKEYLVMHLAPEPRETFVGLFLD 78
>gi|311104314|ref|YP_003977167.1| DNA repair protein RadC 1 [Achromobacter xylosoxidans A8]
gi|310759003|gb|ADP14452.1| DNA repair protein RadC 1 [Achromobacter xylosoxidans A8]
Length = 164
Score = 36.5 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 4/38 (10%), Positives = 9/38 (23%)
Query: 107 KANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + L+ + + FA F
Sbjct: 34 RRIFKAGPCLSRPAAVRDYLRLKLVAEPNEIFAAVFLD 71
>gi|315038037|ref|YP_004031605.1| DNA repair protein RadC [Lactobacillus amylovorus GRL 1112]
gi|312276170|gb|ADQ58810.1| DNA repair protein RadC [Lactobacillus amylovorus GRL 1112]
Length = 207
Score = 36.5 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 6/51 (11%), Positives = 10/51 (19%)
Query: 95 LKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
R+ A+ K LT + + N
Sbjct: 65 AIAAEEVLDRLRLASPKRKAVLTSSVEVGNYLADKLVGHKQEELWALYIDN 115
>gi|114767352|ref|ZP_01446159.1| DNA repair protein RadC [Pelagibaca bermudensis HTCC2601]
gi|114540556|gb|EAU43631.1| DNA repair protein RadC [Roseovarius sp. HTCC2601]
Length = 168
Score = 36.1 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 5/60 (8%), Positives = 13/60 (21%), Gaps = 4/60 (6%)
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ A++ IL+ + L + + + F
Sbjct: 15 PGFSEAEI----ETIDAARDILRRHARATAVLQSWTMLTDYLALNAVRERVEVFRVLLLD 70
>gi|326434008|gb|EGD79578.1| hypothetical protein PTSG_10427 [Salpingoeca sp. ATCC 50818]
Length = 3457
Score = 36.1 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 2 EDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELIL 47
E + + S Y GH R R+ ++ L + + +L
Sbjct: 2026 ESPSLLDVRERVSTPSYHGHRQRSREELARRISEELMDEKSIAGLL 2071
>gi|18978387|ref|NP_579744.1| Hef nuclease [Pyrococcus furiosus DSM 3638]
gi|18894225|gb|AAL82139.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638]
Length = 764
Score = 36.1 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 26 RDRFLQKGEN--ALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE 83
R++ ++ AL E LI+ +P ++A+ LLK F ++ VF A + L +
Sbjct: 682 REKPVRIRSEKKALTLAERQRLIVE-GLPHVSA-TLARRLLKHFGSVERVFTASVAELMK 739
Query: 84 INRIGKRVALELK 96
+ IG+++A E++
Sbjct: 740 VEGIGEKIAKEIR 752
>gi|161507304|ref|YP_001577258.1| DNA repair protein RadC [Lactobacillus helveticus DPC 4571]
gi|260102644|ref|ZP_05752881.1| DNA repair protein [Lactobacillus helveticus DSM 20075]
gi|160348293|gb|ABX26967.1| DNA repair protein RadC [Lactobacillus helveticus DPC 4571]
gi|260083549|gb|EEW67669.1| DNA repair protein [Lactobacillus helveticus DSM 20075]
gi|323466816|gb|ADX70503.1| DNA repair protein RadC [Lactobacillus helveticus H10]
Length = 207
Score = 36.1 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 1/59 (1%)
Query: 88 GKRVALELKLVSVASQRILK-ANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
G + L + + L+ A+ K L + + N
Sbjct: 57 GPNCSSSLAITAEEVMDRLRMASSKRKPVLASSVEVGTYLADKLVGHKQEELWALYVDN 115
>gi|301646528|ref|ZP_07246401.1| DNA repair protein RadC domain protein [Escherichia coli MS 146-1]
gi|301075233|gb|EFK90039.1| DNA repair protein RadC domain protein [Escherichia coli MS 146-1]
Length = 116
Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 2/24 (8%), Positives = 5/24 (20%)
Query: 122 CLISVERHYPMKNANNFAYCFSIN 145
+ + F + N
Sbjct: 1 AREWLILNMAGLEREEFRVLYLNN 24
>gi|255017421|ref|ZP_05289547.1| DNA repair protein RadC [Listeria monocytogenes FSL F2-515]
Length = 34
Score = 36.1 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 17 DYIGHHNRLRDRFLQKGENALAYYEILELIL 47
I + + R++ G AL+ E++ LI+
Sbjct: 4 HEISENEKPREKLQNYGIEALSSSELVALII 34
>gi|221064731|ref|ZP_03540836.1| DNA repair protein RadC [Comamonas testosteroni KF-1]
gi|319764685|ref|YP_004128622.1| DNA repair protein radc [Alicycliphilus denitrificans BC]
gi|220709754|gb|EED65122.1| DNA repair protein RadC [Comamonas testosteroni KF-1]
gi|317119246|gb|ADV01735.1| DNA repair protein RadC [Alicycliphilus denitrificans BC]
Length = 164
Score = 36.1 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 6/57 (10%), Positives = 15/57 (26%), Gaps = 2/57 (3%)
Query: 90 RVALELKLVS--VASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+A + + A + + + L+ + + FA F
Sbjct: 15 AIAAQHEDWIIQQAIVLLERRVFKAGPCLSQPAAVRDYLRLKLVAEPNEIFAAVFLD 71
>gi|163855388|ref|YP_001629686.1| DNA repair protein radC-like protein [Bordetella petrii DSM 12804]
gi|163259116|emb|CAP41415.1| DNA repair protein radC homolog [Bordetella petrii]
Length = 164
Score = 35.7 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 4/34 (11%), Positives = 7/34 (20%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L+ + + FA F
Sbjct: 38 KAGPCLSQPAAVRDYLRLKLVAEPNEIFAAVFLD 71
>gi|301648526|ref|ZP_07248250.1| DNA repair protein RadC domain protein [Escherichia coli MS 146-1]
gi|301073429|gb|EFK88235.1| DNA repair protein RadC domain protein [Escherichia coli MS 146-1]
Length = 116
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 2/24 (8%), Positives = 5/24 (20%)
Query: 122 CLISVERHYPMKNANNFAYCFSIN 145
+ + F + N
Sbjct: 1 AREWLILNMAGLEREEFRVLYLNN 24
>gi|154253862|ref|YP_001414686.1| DNA repair protein RadC [Parvibaculum lavamentivorans DS-1]
gi|154157812|gb|ABS65029.1| DNA repair protein RadC [Parvibaculum lavamentivorans DS-1]
Length = 164
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 3/34 (8%), Positives = 5/34 (14%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L + + F F
Sbjct: 38 KAGPRLDRPAAVRDYLRLKLVAEPNEVFVVVFMD 71
>gi|220936022|ref|YP_002514921.1| DNA repair protein RadC [Thioalkalivibrio sp. HL-EbGR7]
gi|219997332|gb|ACL73934.1| DNA repair protein RadC [Thioalkalivibrio sp. HL-EbGR7]
Length = 166
Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 5/34 (14%), Positives = 7/34 (20%)
Query: 111 SIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
LT + + FA F
Sbjct: 40 KHGAELTSPASVREYLWLKLASEALEVFAVVFLD 73
>gi|332158155|ref|YP_004423434.1| Hef nuclease [Pyrococcus sp. NA2]
gi|331033618|gb|AEC51430.1| Hef nuclease [Pyrococcus sp. NA2]
Length = 749
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R ++ ++ + AL E +I+ +P ++AK LLK F ++ VF A + L
Sbjct: 667 ERKKEVRIRGDKKALTLSERQRMIVES-LPHVSA-TLAKRLLKHFGSVEKVFTASVPELM 724
Query: 83 EINRIGKRVALELK 96
++ IG+++A E++
Sbjct: 725 KVEGIGEKIAREIR 738
>gi|322692208|gb|EFY84151.1| phosphoribosyl transferase domain protein [Metarhizium acridum CQMa
102]
Length = 440
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 21 HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHL 80
H +RLR+ + +A+ ++++L + K +A + A + A L
Sbjct: 292 HRSRLRE---EHFLDAVKDAMDVDMLLITGMRDKAPV-VAFRTWPQAADCSSMAKADLVA 347
Query: 81 LQEINRI--GKRVALELKLVSVASQRILKANWSIKKFLTPGQPC 122
E+ +AL + + K +
Sbjct: 348 CCEVGGFVYALALALRVGASLALIREAGKLPPPTISVIKSPSHI 391
>gi|312132160|ref|YP_003999500.1| restriction endonuclease [Leadbetterella byssophila DSM 17132]
gi|311908706|gb|ADQ19147.1| restriction endonuclease [Leadbetterella byssophila DSM 17132]
Length = 268
Score = 35.7 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 10/110 (9%)
Query: 22 HNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSI---AKALLKRFATLGGVFGAPL 78
R R L+ G + L E+LE IL R+ T+ + A LL+ A
Sbjct: 15 KERFRTSLLKSGASVLQVEEVLENILGRIYEGMRTRELYQWAHQLLQE---KSHALAARY 71
Query: 79 HLLQEINRIGKRVALE----LKLVSVASQRILKANWSIKKFLTPGQPCLI 124
L + + +G K + R + + +T +
Sbjct: 72 SLKKALMELGPAGYYFEKWIAKFLEHLGFRTMHSQHIKGHAVTHEADVIA 121
>gi|299536250|ref|ZP_07049563.1| DNA repair protein RadC [Lysinibacillus fusiformis ZC1]
gi|298728236|gb|EFI68798.1| DNA repair protein RadC [Lysinibacillus fusiformis ZC1]
Length = 174
Score = 35.3 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 1/33 (3%), Positives = 7/33 (21%)
Query: 112 IKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + + + + +F
Sbjct: 49 KDRIIRSPRCAYELIRDFLGDVDREHFVVLCLD 81
>gi|37524159|ref|NP_927503.1| hypothetical protein plu0133 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36783582|emb|CAE12428.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 157
Score = 35.3 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 11/43 (25%)
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + K + ++ H + F + N
Sbjct: 23 RLLEKYQRQPGEQFLAASYTKTWLQLHLARQEREVFVVLYLDN 65
>gi|240103224|ref|YP_002959533.1| Hef nuclease [Thermococcus gammatolerans EJ3]
gi|239910778|gb|ACS33669.1| Hef, Helicase-associated endonuclease for fork-structured DNA (Hef)
[Thermococcus gammatolerans EJ3]
Length = 801
Score = 35.3 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R ++ L+ + AL E LI+ +P + ++AK LL+ F + VF A L+
Sbjct: 718 ERKKEVRLRSEKKALTLAERQRLIVE-GLPNVSS-TLAKRLLRHFGNVEKVFTATEEELK 775
Query: 83 EINRIGKRVALELK 96
E+ IG++ A E++
Sbjct: 776 EVEGIGEKKAREIR 789
>gi|330971404|gb|EGH71470.1| DNA repair protein RadC [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 162
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 6/55 (10%), Positives = 18/55 (32%)
Query: 90 RVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
R E ++++ A + + ++ + L ++ + FA
Sbjct: 15 RRGAEDQMIAEALNLLDRRYFTRGECLFSPTAVADYLKLQLAGHHQEVFAMVCLD 69
>gi|303241972|ref|ZP_07328465.1| DNA repair protein RadC [Acetivibrio cellulolyticus CD2]
gi|302590527|gb|EFL60282.1| DNA repair protein RadC [Acetivibrio cellulolyticus CD2]
Length = 142
Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 5/49 (10%), Positives = 13/49 (26%), Gaps = 2/49 (4%)
Query: 101 ASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS--INII 147
S +I + + + + + +F N+I
Sbjct: 6 VSLKIKREKTITAEVIDSSAKAGKFLVELIGSMDREHFIVMALGTNNVI 54
>gi|304407257|ref|ZP_07388910.1| DNA repair protein RadC [Paenibacillus curdlanolyticus YK9]
gi|304343698|gb|EFM09539.1| DNA repair protein RadC [Paenibacillus curdlanolyticus YK9]
Length = 165
Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 1/30 (3%), Positives = 5/30 (16%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + + + F
Sbjct: 42 VIRSPKDAANLFRQFIGDLDREQFCILCLN 71
>gi|256850919|ref|ZP_05556308.1| DNA repair protein RadC [Lactobacillus jensenii 27-2-CHN]
gi|260661133|ref|ZP_05862047.1| DNA repair protein RadC [Lactobacillus jensenii 115-3-CHN]
gi|282934169|ref|ZP_06339447.1| DNA repair protein RadC [Lactobacillus jensenii 208-1]
gi|297205797|ref|ZP_06923192.1| DNA repair protein RadC [Lactobacillus jensenii JV-V16]
gi|256615981|gb|EEU21169.1| DNA repair protein RadC [Lactobacillus jensenii 27-2-CHN]
gi|260548070|gb|EEX24046.1| DNA repair protein RadC [Lactobacillus jensenii 115-3-CHN]
gi|281301783|gb|EFA94049.1| DNA repair protein RadC [Lactobacillus jensenii 208-1]
gi|297148923|gb|EFH29221.1| DNA repair protein RadC [Lactobacillus jensenii JV-V16]
Length = 207
Score = 35.3 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 2/43 (4%), Positives = 7/43 (16%)
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+R+ + + + N
Sbjct: 73 KRLKAVRTRKLIQFVSSHEVGKYLIDRFLGVEQEQLVVIYLDN 115
>gi|238059567|ref|ZP_04604276.1| 3-dehydroquinate synthase [Micromonospora sp. ATCC 39149]
gi|237881378|gb|EEP70206.1| 3-dehydroquinate synthase [Micromonospora sp. ATCC 39149]
Length = 373
Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 30 LQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGK 89
LQ G +A+ +L P + +A+ LL+R + A + ++ I +G
Sbjct: 162 LQHGPDAM--------LLRVSTPGE-VARLARELLERRTEQLDLVEAEVTAVRSI-GMGM 211
Query: 90 RVALELKLVSV 100
R ++ +
Sbjct: 212 RGCVDTADLFE 222
>gi|238855285|ref|ZP_04645604.1| DNA repair protein RadC [Lactobacillus jensenii 269-3]
gi|260664643|ref|ZP_05865495.1| DNA repair protein RadC [Lactobacillus jensenii SJ-7A-US]
gi|282932422|ref|ZP_06337847.1| RadC-like protein [Lactobacillus jensenii 208-1]
gi|313471902|ref|ZP_07812394.1| DNA repair protein RadC [Lactobacillus jensenii 1153]
gi|238832177|gb|EEQ24495.1| DNA repair protein RadC [Lactobacillus jensenii 269-3]
gi|239529177|gb|EEQ68178.1| DNA repair protein RadC [Lactobacillus jensenii 1153]
gi|260561708|gb|EEX27680.1| DNA repair protein RadC [Lactobacillus jensenii SJ-7A-US]
gi|281303371|gb|EFA95548.1| RadC-like protein [Lactobacillus jensenii 208-1]
Length = 207
Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 2/43 (4%), Positives = 7/43 (16%)
Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+R+ + + + N
Sbjct: 73 KRLKAVRTRKLIQFVSSHEVGKYLIDRFLGIEQEQLVVIYLDN 115
>gi|163858086|ref|YP_001632384.1| DNA repair protein radC-like protein [Bordetella petrii DSM 12804]
gi|163261814|emb|CAP44116.1| DNA repair protein radC homolog [Bordetella petrii]
Length = 177
Score = 35.3 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 5/57 (8%), Positives = 14/57 (24%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G+ A V A++ ++ + + + A +
Sbjct: 28 GRYQAATDSHVLAAARVAAESLIGDRADMGNPNAVKHYFQAKLSGMGHEVAAVLYLN 84
>gi|21673094|ref|NP_661159.1| DprA/SMF protein, putative DNA processing factor [Chlorobium
tepidum TLS]
gi|21646166|gb|AAM71501.1| DprA/SMF protein, putative DNA processing factor [Chlorobium
tepidum TLS]
Length = 399
Score = 35.3 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 23/63 (36%)
Query: 60 AKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPG 119
A+ALL RF + A L++I IG+ A E KA + L
Sbjct: 46 ARALLNRFGATPALLEADYDALRQIPGIGETTARETAERLANPAWRDKAREKGENQLARA 105
Query: 120 QPC 122
+
Sbjct: 106 ERL 108
>gi|227498227|ref|ZP_03928396.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434]
gi|226832370|gb|EEH64753.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434]
Length = 827
Score = 34.9 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 60 AKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVA 101
A+AL RF +L + A L L +++ +G +A +
Sbjct: 674 ARALAARFGSLEALRQASLDELSQVDGVGPTIAAAWQEWLEV 715
>gi|94311291|ref|YP_584501.1| DNA repair protein RadC [Cupriavidus metallidurans CH34]
gi|254241444|ref|ZP_04934766.1| hypothetical protein PA2G_02139 [Pseudomonas aeruginosa 2192]
gi|24461569|gb|AAN62140.1|AF440523_47 putative DNA repair protein RadC [Pseudomonas aeruginosa]
gi|93355143|gb|ABF09232.1| DNA binding protein, possibly associated to lesions [Cupriavidus
metallidurans CH34]
gi|126194822|gb|EAZ58885.1| hypothetical protein PA2G_02139 [Pseudomonas aeruginosa 2192]
Length = 164
Score = 34.9 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 5/57 (8%), Positives = 12/57 (21%), Gaps = 2/57 (3%)
Query: 90 RVALELKLVSVASQRILKAN--WSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+A + + + L + L + + F F
Sbjct: 15 AIAAQHEDWIIQQAIALLEKRVFKAGPKLLDPTAVRDYLRVKLVAEPNEIFVAVFLD 71
>gi|222081919|ref|YP_002541284.1| acyl-CoA transferases/L-carnitine dehydratase protein
[Agrobacterium radiobacter K84]
gi|221726598|gb|ACM29687.1| acyl-CoA transferases/L-carnitine dehydratase protein
[Agrobacterium radiobacter K84]
Length = 391
Score = 34.9 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 1 LEDFRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIA 60
L + ++ P + D H LR ++ + E+ +L+ +P +A
Sbjct: 257 LGNPGLTADPRFKTDPDRQSHQEELRA-IIEGWTRTCSTEEVTQLLDEAGVPAAPIYDLA 315
Query: 61 KALLKRFATLGGVFG 75
+AL A +
Sbjct: 316 QALATPHAQHRQLLH 330
>gi|238790648|ref|ZP_04634412.1| DNA repair protein RadC [Yersinia frederiksenii ATCC 33641]
gi|238721253|gb|EEQ12929.1| DNA repair protein RadC [Yersinia frederiksenii ATCC 33641]
Length = 194
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 4/46 (8%), Positives = 9/46 (19%), Gaps = 1/46 (2%)
Query: 101 ASQRILKANWSIKKFL-TPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ +L K + + + F N
Sbjct: 57 MALLLLDKQLKRKSVIFPSTTEVKQYLRLQLEQQERELFMVMHLDN 102
>gi|124514541|gb|EAY56054.1| DNA repair proteins (RadC) [Leptospirillum rubarum]
Length = 412
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 7/79 (8%), Positives = 16/79 (20%)
Query: 66 RFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
+L + L + + L V +R+ L +
Sbjct: 50 EHVSLRNLSRMTPTELSRTLGLSESEGKRLGAALVLGERLASEPIERGAPLDNVEKVARF 109
Query: 126 VERHYPMKNANNFAYCFSI 144
+ +F
Sbjct: 110 FDGRVKDAKKESFWLITLN 128
>gi|330429000|gb|AEC20334.1| DNA repair protein radC-like protein [Pusillimonas sp. T7-7]
Length = 177
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 3/47 (6%), Positives = 11/47 (23%)
Query: 98 VSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
V A++ ++ + + + A +
Sbjct: 38 VLAAARIAAESLIGDRADMGNPNAVKRYFQAKLSGMGHEVAAVLYLN 84
>gi|255974631|ref|ZP_05425217.1| predicted protein [Enterococcus faecalis T2]
gi|307280301|ref|ZP_07561353.1| conserved domain protein [Enterococcus faecalis TX0860]
gi|255967503|gb|EET98125.1| predicted protein [Enterococcus faecalis T2]
gi|306504120|gb|EFM73334.1| conserved domain protein [Enterococcus faecalis TX0860]
Length = 127
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 15/119 (12%)
Query: 27 DRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINR 86
DR N L E++EL+ + A LL+ TL + + +
Sbjct: 21 DRVRTTNFNELRTQELIELLFNLKPSK------AAELLESIDTLTDLKSV-------LTK 67
Query: 87 IGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + K S+R+L+ + +K + P + + +F ++N
Sbjct: 68 FSPNMEFQFKANFELSKRMLQFDVKKEKITSSYGPV-QHLIQEIRDLEQEHF-ILLTLN 124
>gi|124028385|ref|YP_001013705.1| hypothetical protein Hbut_1538 [Hyperthermus butylicus DSM 5456]
gi|123979079|gb|ABM81360.1| hypothetical protein Hbut_1538 [Hyperthermus butylicus DSM 5456]
Length = 384
Score = 34.6 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 8/118 (6%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R+R++ + E++E +L R + R ++ A+ A L A L
Sbjct: 7 ERVREKLAALASEIASDGELVEKLLRRALARAQSQDYAR-----LAGLSEKLLAALEERG 61
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV--ERHYPMKNANNF 138
++ I +V S++ + + F
Sbjct: 62 LLHGIPGKVRANTFYGVDGSRQYVGGRLGRYYVFAAS-AVVEYRDGRARVSYPAVEVF 118
>gi|163858876|ref|YP_001633174.1| putative DNA repair protein [Bordetella petrii DSM 12804]
gi|163262604|emb|CAP44907.1| putative DNA repair protein [Bordetella petrii]
Length = 174
Score = 34.6 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 3/57 (5%), Positives = 14/57 (24%)
Query: 88 GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
G + + ++ ++ + + L+ ++ A
Sbjct: 25 GAMRPAQRAEILAVARELVSIDTLHGEDLSNPDKAKAFLQLRLAGLEHEVCALMLLD 81
>gi|227877311|ref|ZP_03995384.1| DNA repair protein [Lactobacillus crispatus JV-V01]
gi|256842873|ref|ZP_05548361.1| DNA repair protein [Lactobacillus crispatus 125-2-CHN]
gi|256848753|ref|ZP_05554187.1| DNA repair protein [Lactobacillus crispatus MV-1A-US]
gi|262045839|ref|ZP_06018803.1| DNA repair protein [Lactobacillus crispatus MV-3A-US]
gi|293381707|ref|ZP_06627688.1| DNA repair protein RadC [Lactobacillus crispatus 214-1]
gi|312977608|ref|ZP_07789355.1| DNA repair protein RadC [Lactobacillus crispatus CTV-05]
gi|227863167|gb|EEJ70613.1| DNA repair protein [Lactobacillus crispatus JV-V01]
gi|256614293|gb|EEU19494.1| DNA repair protein [Lactobacillus crispatus 125-2-CHN]
gi|256714292|gb|EEU29279.1| DNA repair protein [Lactobacillus crispatus MV-1A-US]
gi|260573798|gb|EEX30354.1| DNA repair protein [Lactobacillus crispatus MV-3A-US]
gi|290921754|gb|EFD98775.1| DNA repair protein RadC [Lactobacillus crispatus 214-1]
gi|310895347|gb|EFQ44414.1| DNA repair protein RadC [Lactobacillus crispatus CTV-05]
Length = 210
Score = 34.6 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 94 ELKLVSVASQRILK-ANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
EL + + A L+ A+ K LT + + N
Sbjct: 63 ELAITAEAVLDRLRCASPKRKTILTSSIEVGTYLADKLIGHKQEELWALYIDN 115
>gi|32472906|ref|NP_865900.1| hypothetical protein RB4105 [Rhodopirellula baltica SH 1]
gi|32444143|emb|CAD73586.1| RadC [Rhodopirellula baltica SH 1]
Length = 208
Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 39/142 (27%), Gaps = 36/142 (25%)
Query: 12 KDSHLDYIGH--HNRLRDRFLQKGENALAYYEILELILFR---LIPRKDTKSIAKALLKR 66
+ Y+G R++++ + E+L L+L + + + IA+A
Sbjct: 2 PKAKPTYVGKLVSPRVKEK---------SDKELLALVLRSQFERVANRKVREIAQA---- 48
Query: 67 FATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISV 126
+ + L +R+ +A + + LT +
Sbjct: 49 --------------SKAELGLTDIAYERLMAGIELGKRVGEAKTNFNERLTSTHKAVAFC 94
Query: 127 ERHYPMK----NANNFAYCFSI 144
H+ F
Sbjct: 95 RSHFSRLIAEGLQEEFHIVTLD 116
>gi|242398676|ref|YP_002994100.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM
739]
gi|242265069|gb|ACS89751.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM
739]
Length = 772
Score = 34.6 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 50 LIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
+P +A+ LLK F + VF A L ++ IG+++A E++
Sbjct: 716 GLPNVSAV-LARRLLKHFGNVERVFTAKESELIQVEGIGEKIAKEIR 761
>gi|295692678|ref|YP_003601288.1| DNA repair protein radc [Lactobacillus crispatus ST1]
gi|295030784|emb|CBL50263.1| DNA repair protein RadC [Lactobacillus crispatus ST1]
Length = 210
Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 94 ELKLVSVASQRILK-ANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
EL + + A L+ A+ K LT + + N
Sbjct: 63 ELAITAEAVLDRLRCASPKRKTILTSSIEVGTYLADKLIGHKQEELWALYIDN 115
>gi|126730724|ref|ZP_01746534.1| DNA repair protein RadC [Sagittula stellata E-37]
gi|126708890|gb|EBA07946.1| DNA repair protein RadC [Sagittula stellata E-37]
Length = 146
Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 9/43 (20%), Gaps = 1/43 (2%)
Query: 102 SQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
++ IL S + Q + +
Sbjct: 12 ARDILGRYLSQNPVIGSWQALMDYCALTVRG-PIERLHVFYLD 53
>gi|148548137|ref|YP_001268239.1| DNA repair protein RadC [Pseudomonas putida F1]
gi|148512195|gb|ABQ79055.1| DNA repair protein RadC [Pseudomonas putida F1]
Length = 164
Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 91 VALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
A E L+S A Q + + ++ + L ++ + FA
Sbjct: 18 RAREDALISEALQLLDQRHFQRGEALITPADAAAYLKLQLAPYHHEVFALLCLD 71
>gi|326693277|ref|ZP_08230282.1| DNA repair protein [Leuconostoc argentinum KCTC 3773]
Length = 212
Score = 34.6 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 6/102 (5%), Positives = 20/102 (19%), Gaps = 3/102 (2%)
Query: 49 RLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKA 108
+D L + F + ++ + L + +++
Sbjct: 13 YATLGQDAAQQLHMLRRFFPNDYDLNEMTQDNQEDFIAQNPTINRALLIGMAIGRQVASV 72
Query: 109 NWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI---NII 147
+ ++ N+I
Sbjct: 73 TRPKMLSAKFSEEIGHYAQKQLGHLPQEQLCVALLDAQLNVI 114
>gi|163841016|ref|YP_001625421.1| excinuclease ABC subunit C [Renibacterium salmoninarum ATCC 33209]
gi|189038078|sp|A9WT69|UVRC_RENSM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
Full=Excinuclease ABC subunit C
gi|162954492|gb|ABY24007.1| excinuclease ABC subunit C [Renibacterium salmoninarum ATCC 33209]
Length = 655
Score = 34.6 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTP 118
KALLK F ++ + A + + E+ IG +A ++ + N + + L
Sbjct: 598 KALLKHFGSVKKLQSADVSQISEVKGIGPVLAEAVRSALESVDAQPAINMATGEILES 655
>gi|14520497|ref|NP_125972.1| Hef nuclease [Pyrococcus abyssi GE5]
gi|5457712|emb|CAB49203.1| Putative ATP-dependent ERCC4-like helicase [Pyrococcus abyssi GE5]
Length = 752
Score = 34.2 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 59 IAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
+AK LLK F ++ VF A + L ++ IG+++A E++
Sbjct: 705 LAKRLLKHFGSVERVFTASVPELMKVEGIGEKIAREIR 742
>gi|302381535|ref|YP_003817358.1| endonuclease III [Brevundimonas subvibrioides ATCC 15264]
gi|302192163|gb|ADK99734.1| endonuclease III [Brevundimonas subvibrioides ATCC 15264]
Length = 246
Score = 34.2 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 28 RFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRI 87
+ L GE L Y I + L+R ++ ++++ +L++ + + A LQ + +
Sbjct: 97 KMLALGEEGLVPY-IASIGLYRG-KARNVIALSRIILEQHGGVTPLNRAD---LQALPGV 151
Query: 88 GKRVAL 93
G++ A
Sbjct: 152 GRKTAS 157
>gi|288572809|ref|ZP_06391166.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288568550|gb|EFC90107.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 674
Score = 34.2 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 39 YYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLV 98
+ L+ I K +A+ L++R+ ++ + A L I +G +A L+
Sbjct: 501 DRPLAALLAGLGIRHVG-KGVAELLVERYGSMEALRRADPEELGSIEGVGPAIAASLEAF 559
Query: 99 S 99
Sbjct: 560 F 560
>gi|239618216|ref|YP_002941538.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
gi|239507047|gb|ACR80534.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
Length = 672
Score = 34.2 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 40 YEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVS 99
+++L IP K +A+ L + F TL + A + L E+ IG +A +
Sbjct: 508 HKLLA---GLGIPGVGVK-LARDLAEHFKTLDALQNATIDQLLEVPGIGLELAKNIVEFF 563
Query: 100 VASQRILKANWSIKKFLTPGQP 121
+ + K+ T +
Sbjct: 564 NLPEIKEEIEHLKKEVNTSERS 585
>gi|254522631|ref|ZP_05134686.1| DNA repair protein RadC [Stenotrophomonas sp. SKA14]
gi|313107555|ref|ZP_07793740.1| hypothetical protein PA39016_001030004 [Pseudomonas aeruginosa
39016]
gi|219720222|gb|EED38747.1| DNA repair protein RadC [Stenotrophomonas sp. SKA14]
gi|310880242|gb|EFQ38836.1| hypothetical protein PA39016_001030004 [Pseudomonas aeruginosa
39016]
Length = 164
Score = 34.2 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 4/30 (13%), Positives = 6/30 (20%)
Query: 115 FLTPGQPCLISVERHYPMKNANNFAYCFSI 144
L + + FA F
Sbjct: 42 KLLDPTAVRDYLRVKLVAEPNEIFAAVFLD 71
>gi|253576954|ref|ZP_04854278.1| DNA repair protein RadC [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843685|gb|EES71709.1| DNA repair protein RadC [Paenibacillus sp. oral taxon 786 str. D14]
Length = 162
Score = 34.2 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 4/62 (6%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 83 EINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCF 142
++N + R + + + +++++ ++ +V + +F
Sbjct: 10 QLNALPPRRRKQAEKLLELIRKVMEGE--KDHYIHTPADVFQAVATDLVGLDKEHFMILI 67
Query: 143 SI 144
Sbjct: 68 LN 69
>gi|226228487|ref|YP_002762593.1| glutamate synthase [NADPH] large chain [Gemmatimonas aurantiaca
T-27]
gi|226091678|dbj|BAH40123.1| glutamate synthase [NADPH] large chain [Gemmatimonas aurantiaca
T-27]
Length = 1550
Score = 34.2 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 4 FRMSKAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRL-IPRKDTKSIAKA 62
M+ D+ H RLRD +G ++ + LEL++ P +
Sbjct: 278 NAMAMRGPLLDAPDFGSHAERLRDPIRPRGSDSASLDNALELLVRAGRSPVHAAMMLVPQ 337
Query: 63 LLKRFATLGGVFGAPLHLLQEI--NRIGKRVAL 93
+++ + V A Q + G
Sbjct: 338 AWEKYPDVEPVVKAFYEYHQCVIEPWDGPAAVA 370
>gi|257784913|ref|YP_003180130.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
gi|257473420|gb|ACV51539.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
Length = 705
Score = 34.2 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 11/101 (10%), Positives = 33/101 (32%), Gaps = 8/101 (7%)
Query: 45 LILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQR 104
++ + ++A+ L + F ++ + AP+ + EI IG ++A + +
Sbjct: 542 VLFGIGMRHVGA-NVAELLAQEFGSIQALATAPVEKIAEIPGIGPKIAESVHEFFSIPEN 600
Query: 105 ILK-ANWSIKKFLTPGQPCLISVERHYPMK------NANNF 138
+ + + + + +F
Sbjct: 601 VAVIERLRQAGVVLEEEKTENELPQTLAGLTFVLTGTLEHF 641
>gi|269126428|ref|YP_003299798.1| excinuclease ABC subunit C [Thermomonospora curvata DSM 43183]
gi|268311386|gb|ACY97760.1| excinuclease ABC, C subunit [Thermomonospora curvata DSM 43183]
Length = 684
Score = 34.2 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 15/83 (18%)
Query: 21 HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHL 80
H R R + + GE L+ + R+ LLK F +L + A +
Sbjct: 580 HRQR-RSKAMTAGE--------LDGVPGLGPARRTA------LLKHFGSLKRLREATVAQ 624
Query: 81 LQEINRIGKRVALELKLVSVASQ 103
+ E+ IG R A ++
Sbjct: 625 IAEVPGIGPRTAEQIAAALHGGA 647
>gi|148242144|ref|YP_001227301.1| endonuclease III [Synechococcus sp. RCC307]
gi|147850454|emb|CAK27948.1| Endonuclease III [Synechococcus sp. RCC307]
Length = 217
Score = 34.2 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 10/110 (9%)
Query: 35 NALAYYEILELILFRL---IPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIG--- 88
AL+ EIL LI K+ K +A+ LL+R L+ + +G
Sbjct: 66 AALSEAEILGLIRQLGLAKTKAKNVKRLAELLLERHGGEVP---GSFEALEALPGVGHKT 122
Query: 89 -KRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137
V + V + + L+ G + + +
Sbjct: 123 ASVVMSQAFGVPAFPVDTHIHRLAQRWGLSNGDSVAQTEADLKRLFPKEH 172
>gi|237736412|ref|ZP_04566893.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
gi|229421454|gb|EEO36501.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
Length = 154
Score = 34.2 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 94 ELKLVSVASQRILKANWSIKK--FLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
E++ + I K + + + L ++ + +N F F N
Sbjct: 9 EIEELKELIHYISKEGIKRRDLTTIKNKENLLEFLKINLSPRNNEEFKILFLNN 62
>gi|116048641|ref|YP_792559.1| hypothetical protein PA14_54860 [Pseudomonas aeruginosa UCBPP-PA14]
gi|115583862|gb|ABJ09877.1| hypothetical protein PA14_54860 [Pseudomonas aeruginosa UCBPP-PA14]
Length = 202
Score = 34.2 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 107 KANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ + + L + + K+ FA F
Sbjct: 77 RRMFRRGQELLSPRGLRQYLRLRLVGKSEEVFAAVFLD 114
>gi|86144605|ref|ZP_01062937.1| transcriptional regulator MalT [Vibrio sp. MED222]
gi|85837504|gb|EAQ55616.1| transcriptional regulator MalT [Vibrio sp. MED222]
Length = 902
Score = 33.8 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 16/136 (11%)
Query: 10 PSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA- 68
PSK + + H+ LR R L + L + +L+LFR ++A L
Sbjct: 4 PSKLTRPGRL-HNAILRPRVL----DLLQNADCYKLVLFRSPAGYGKTTMAAQWLLDKPN 58
Query: 69 -TLGGVFGAPLHLLQEINRI--GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
+ + + IN + A + + + K+ + L
Sbjct: 59 VGWYSIDDSDNDAFRFINYLLQSLNKATQNSCPN-------AQKLAEKRQFSSLHSLLSE 111
Query: 126 VERHYPMKNANNFAYC 141
V + F
Sbjct: 112 VFAEMSDYHHECFLVL 127
>gi|170722464|ref|YP_001750152.1| DNA repair protein RadC [Pseudomonas putida W619]
gi|169760467|gb|ACA73783.1| DNA repair protein RadC [Pseudomonas putida W619]
Length = 164
Score = 33.8 bits (76), Expect = 7.5, Method: Composition-based stats.
Identities = 3/38 (7%), Positives = 10/38 (26%)
Query: 107 KANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
+ ++ + L ++ + FA
Sbjct: 34 QRHFQRGEVLITPADAAAYLKLQLAPYHHEVFALLCLD 71
>gi|317053594|ref|YP_004118728.1| DNA repair protein RadC [Pantoea sp. At-9b]
gi|316952699|gb|ADU72172.1| DNA repair protein RadC [Pantoea sp. At-9b]
Length = 143
Score = 33.8 bits (76), Expect = 7.6, Method: Composition-based stats.
Identities = 6/55 (10%), Positives = 16/55 (29%)
Query: 91 VALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145
+ + + R + ++ F + + ++ FA F N
Sbjct: 1 MMATESQILEEAARAIDHRYATGTFFASPEMSGVFFRVKLVGRSREIFAVAFLNN 55
>gi|218675965|ref|YP_002394784.1| transcriptional regulator MalT [Vibrio splendidus LGP32]
gi|218324233|emb|CAV25502.1| HTH-type transcriptional regulator malT (ATP-dependent
transcriptional activator malT) [Vibrio splendidus
LGP32]
Length = 907
Score = 33.8 bits (76), Expect = 7.6, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 16/136 (11%)
Query: 10 PSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFA- 68
PSK + + H+ LR R L + L + +L+LFR ++A L
Sbjct: 9 PSKLTRPGRL-HNAILRPRVL----DLLQNADCYKLVLFRSPAGYGKTTMAAQWLLDKPN 63
Query: 69 -TLGGVFGAPLHLLQEINRI--GKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLIS 125
+ + + IN + A + + + K+ + L
Sbjct: 64 VGWYSIDDSDNDAFRFINYLLQSLNKATQNACPN-------AQKLAEKRQFSSLHSLLSE 116
Query: 126 VERHYPMKNANNFAYC 141
V + F
Sbjct: 117 VFAEMSDYHHECFLVL 132
>gi|3258335|dbj|BAA31018.1| 90aa long hypothetical DNA excision repair protein [Pyrococcus
horikoshii OT3]
Length = 90
Score = 33.8 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 23 NRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQ 82
R R+ ++ + AL E +I+ +P T ++A+ LL+ F ++ VF A + L
Sbjct: 8 ERKREVRIRGEKKALTLAERQRMIVES-LPNVST-TLARRLLRHFGSVEKVFTASVPELM 65
Query: 83 EINRIGKRVALELK 96
++ IG+++A E++
Sbjct: 66 KVEGIGEKIAREIR 79
>gi|317124808|ref|YP_004098920.1| excinuclease ABC subunit C [Intrasporangium calvum DSM 43043]
gi|315588896|gb|ADU48193.1| Excinuclease ABC subunit C [Intrasporangium calvum DSM 43043]
Length = 709
Score = 33.8 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 15/79 (18%)
Query: 21 HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHL 80
H R R + + +AL + R+ +ALLK F ++ + A
Sbjct: 627 HRQR-RSKAMT--ASALDGVQ------GLGAARQ------RALLKHFGSVKRLRAAEPEA 671
Query: 81 LQEINRIGKRVALELKLVS 99
+ + IG +A +
Sbjct: 672 IMAVPGIGPALAAAIVAHL 690
>gi|24461706|gb|AAN62275.1|AF440524_62 putative DNA repair protein RadC [Pseudomonas aeruginosa]
Length = 166
Score = 33.8 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 6/59 (10%), Positives = 19/59 (32%)
Query: 85 NRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFS 143
+A E ++++ A + + + ++ Q + + + F F
Sbjct: 14 PGSASVLAYENRIIAQAIAILERRLFVDGPQMSDPQVTSDYLRLKLMPEPSEVFVAVFL 72
>gi|78100875|pdb|1X2I|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
Pyrococcus Furiosus, Helix-Hairpin-Helix Domain
gi|78100876|pdb|1X2I|B Chain B, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
Pyrococcus Furiosus, Helix-Hairpin-Helix Domain
Length = 75
Score = 33.8 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 50 LIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
+P ++A+ LLK F ++ VF A + L ++ IG+++A E++
Sbjct: 18 GLPHVSA-TLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIR 63
>gi|182413079|ref|YP_001818145.1| glucosyltransferase MdoH [Opitutus terrae PB90-1]
gi|177840293|gb|ACB74545.1| glycosyl transferase family 2 [Opitutus terrae PB90-1]
Length = 713
Score = 33.4 bits (75), Expect = 9.6, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 25 LRDRFLQKGENALAYYEILELI 46
LR+R +++G AL E+L ++
Sbjct: 645 LRERLVREGPAALNSRELLAVL 666
>gi|124027340|ref|YP_001012660.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456]
gi|123978034|gb|ABM80315.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456]
Length = 243
Score = 33.4 bits (75), Expect = 9.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 59 IAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALEL 95
+A+ LL+RF TL + A + L + IG++ A E+
Sbjct: 189 LARRLLERFGTLRRIANASVQELMSVRGIGEKRAREI 225
>gi|262197027|ref|YP_003268236.1| adenylosuccinate lyase [Haliangium ochraceum DSM 14365]
gi|262080374|gb|ACY16343.1| adenylosuccinate lyase [Haliangium ochraceum DSM 14365]
Length = 443
Score = 33.4 bits (75), Expect = 10.0, Method: Composition-based stats.
Identities = 11/96 (11%), Positives = 30/96 (31%), Gaps = 8/96 (8%)
Query: 21 HHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHL 80
H R+R+ + G + +L L+ +PR+ + + A
Sbjct: 339 HPERMRENLERTGSLYCSEAVLLALV-RAGLPRQRAYEMVQR-------CALAAHAGEGD 390
Query: 81 LQEINRIGKRVALELKLVSVASQRILKANWSIKKFL 116
+++ + L ++ + L + +
Sbjct: 391 FRQLLGADSDIRDHLSENALDAAFDLDHHLRHVDLI 426
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.313 0.143 0.405
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,278,531,216
Number of Sequences: 13984884
Number of extensions: 46908623
Number of successful extensions: 247743
Number of sequences better than 10.0: 2186
Number of HSP's better than 10.0 without gapping: 2105
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 244988
Number of HSP's gapped (non-prelim): 2218
length of query: 148
length of database: 4,792,584,752
effective HSP length: 111
effective length of query: 37
effective length of database: 3,240,262,628
effective search space: 119889717236
effective search space used: 119889717236
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 76 (33.8 bits)