RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= 537021.9.peg.817_1
(148 letters)
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix,
hydrolase; HET: DNA; NMR {Homo sapiens} (A:)
Length = 89
Score = 30.1 bits (68), Expect = 0.12
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 57 KSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
K+ ++ LL F +L + A L +G + A L
Sbjct: 29 KTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLF 68
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA
repair, DNA-binding, DNA binding protein; HET: DNA 2BA;
2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A*
3c23_A* (A:304-377)
Length = 74
Score = 30.0 bits (68), Expect = 0.14
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 57 KSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
SI +++ F TL + A + L+++ IG++ A +
Sbjct: 22 LSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAIS 61
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH
domain, DNA-binding domain, DNA binding protein; NMR
{Escherichia coli} (A:)
Length = 78
Score = 29.3 bits (66), Expect = 0.23
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 57 KSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
+ LLK L G+ A + + ++ I + +A ++
Sbjct: 34 PKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 73
>1vpy_A Protein (hypothetical protein EF0366); structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; 2.52A {Enterococcus faecalis V583}
(A:)
Length = 289
Score = 28.8 bits (64), Expect = 0.35
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 16/79 (20%)
Query: 2 EDFRMS-KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEI---------LELILFRLI 51
E+FR K S I + + + E A+ E L L +
Sbjct: 69 ENFRFVXKVYS------GISCQGEWQTYYASEEEXITAFLESXAPLIESKKLFAFLVQFS 122
Query: 52 PRKDTKSIAKALLKRFATL 70
A L++
Sbjct: 123 GTFGCTKENVAYLQKIRHW 141
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide
excision repair, DNA repair, RNAse H, cytoplasm, DNA
damage, DNA excision; 1.90A {Bacillus
stearothermophilus} (A:)
Length = 226
Score = 28.3 bits (62), Expect = 0.49
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 57 KSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
+ KALL F ++ + A + LQ N I + VA ++
Sbjct: 183 EKRKKALLNYFGSVKKMKEATVEELQRAN-IPRAVAEKIY 221
>3eq2_A Probable two-component response regulator; adaptor sigmas,
signaling protein; 3.40A {Pseudomonas aeruginosa}
(A:1-167)
Length = 167
Score = 27.2 bits (60), Expect = 0.87
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 27 DRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINR 86
+L K L +LE + R + R + + + A L+LLQE
Sbjct: 101 ADYLIKPLEDL---AVLEHSVRRALDRAYLRVENQRYRDKLEAANRELQASLNLLQEDQN 157
Query: 87 IGKRVALE 94
G++V
Sbjct: 158 AGRQVQXN 165
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta
protein, structural genomics, PSI-2, protein structure
initiative; HET: COA; 2.40A {Shewanella oneidensis mr-1}
(A:1-181)
Length = 181
Score = 26.5 bits (58), Expect = 1.5
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 52 PRKDTKSIAKA--LLKRFATL--GGVFGAPLHLLQEINRIGKRVALELKLVSVASQ 103
P +S +A L++ TL P LL + + + + L+ + ++
Sbjct: 2 PAIVCQSALEAVSLIRSGETLWTHSXGATPKVLLDALAKHALTLD-NITLLQLHTE 56
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H,
helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga
maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A (A:157-220)
Length = 64
Score = 26.1 bits (58), Expect = 2.0
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 57 KSIAKALLKRFATLGGVFGAPLHLLQEINRIGK 89
K L++ F +L + A L + + +
Sbjct: 22 PIRKKKLIEHFGSLENIRSASLEEIARVIGSTE 54
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum,
DNA repair, endonuclease, helix-hairpin-helix, DNA
binding protein; HET: DNA; 2.70A {Homo sapiens} (A:)
Length = 63
Score = 25.7 bits (57), Expect = 2.5
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 60 AKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
++L+ + + L I A +L
Sbjct: 17 CRSLMHHVKNIAELAALSQDELTSIL-GNAANAKQLY 52
>2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding,
hydrolase; 2.86A {Staphylococcus hyicus} (A:)
Length = 431
Score = 25.5 bits (54), Expect = 2.9
Identities = 5/27 (18%), Positives = 8/27 (29%), Gaps = 3/27 (11%)
Query: 14 SHLDYIGHHNRLRDRFLQKGENALAYY 40
H D+IG+ +Y
Sbjct: 389 DHSDFIGNDALDTKHS---AIELTNFY 412
>3elq_A Arylsulfate sulfotransferase; beta propeller,
protein-substrate complex, periplasm,
transesterification, phenol, bacteria; 2.00A
{Escherichia coli} PDB: 3ett_A* 3ets_A*
(A:110-198,A:496-571)
Length = 165
Score = 24.8 bits (54), Expect = 4.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 68 ATLGGVFGAPLHLLQEINRIGKRVALELKLVS 99
L V + L EI+ K V +E+ ++S
Sbjct: 114 IHLFDVGQPTVGKLNEIDYKTKEVKVEIDVLS 145
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding,
oxidoreductase, soybean lipoxygenase-B, fatty acid
biosynthesis, lipid synthesis; 2.4A {Glycine max}
(A:1-166)
Length = 166
Score = 24.8 bits (54), Expect = 5.3
Identities = 3/43 (6%), Positives = 13/43 (30%)
Query: 53 RKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALEL 95
+ ++ +G L + + ++++L
Sbjct: 18 MQKNVLDINSITSVDGIVGTGLDFLGSALDTVTFLASSISIQL 60
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
1.79A {Cytophaga hutchinsonii atcc 33406} (A:520-634)
Length = 115
Score = 24.0 bits (52), Expect = 8.4
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 31 QKGENALAYYEILELILFRLIPRKDT-KSIAKALLKRF 67
Q E L Y++L I + I + + + ALL
Sbjct: 7 QTDERDLXPYDVLARIERKAIKERLSPVQVYTALLTEG 44
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.326 0.141 0.417
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,106,621
Number of extensions: 44696
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 21
Length of query: 148
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 67
Effective length of database: 2,217,844
Effective search space: 148595548
Effective search space used: 148595548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.2 bits)