RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.818_1 (44 letters) >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} (A:) Length = 457 Score = 24.5 bits (51), Expect = 4.7 Identities = 1/17 (5%), Positives = 4/17 (23%) Query: 22 SLNGNLLKGLCSFGNLP 38 +L + + Sbjct: 2 TLKAGQTQSFNDWFPDD 18 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.326 0.146 0.459 Gapped Lambda K H 0.267 0.0339 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 320,733 Number of extensions: 8409 Number of successful extensions: 19 Number of sequences better than 10.0: 1 Number of HSP's gapped: 19 Number of HSP's successfully gapped: 7 Length of query: 44 Length of database: 4,956,049 Length adjustment: 16 Effective length of query: 28 Effective length of database: 4,415,169 Effective search space: 123624732 Effective search space used: 123624732 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (24.1 bits)