RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.818_1
         (44 letters)



>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase;
           2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
          Length = 556

 Score = 26.4 bits (58), Expect = 1.6
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 2   PMHFLLFEGSDLADDCDAQYSLNGNLLKGLCSFG 35
              F LF G  +    D  ++++G    GL   G
Sbjct: 518 TFEFRLFTGEVIKLFQDGTFTIDGFKCPGLVYTG 551


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.326    0.146    0.459 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 363,939
Number of extensions: 9514
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 44
Length of database: 5,693,230
Length adjustment: 17
Effective length of query: 27
Effective length of database: 5,281,082
Effective search space: 142589214
Effective search space used: 142589214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.3 bits)