Query         537021.9.peg.82_1
Match_columns 41
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Mon May 23 08:10:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_82.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2kvh_A Zinc finger and BTB dom  10.7      55  0.0023   15.2   0.5   14    1-14      9-22  (27)
  2 3kyp_A Pfnaps, nucleosome asse   5.8 1.3E+02  0.0056   13.3   0.6   15   22-36     35-49  (193)
  3 1jo6_A KCNMB2, potassium large   5.6   1E+02  0.0042   14.0  -0.1   15    3-17     23-37  (45)
  4 1g1e_B SIN3A; four-helix bundl   5.1 1.2E+02  0.0049   13.6  -0.0   27   15-41     62-88  (89)
  5 3e21_A HFAF1, FAS-associated f   5.0 1.5E+02  0.0061   13.2   0.4   12   30-41     34-45  (45)
  6 2zd7_A VPS75, vacuolar protein   4.3 1.8E+02  0.0077   12.7   0.5   15   22-36     41-55  (264)
  7 2e50_A Protein SET; histone ch   4.2 1.9E+02  0.0081   12.6   0.5   15   22-36     65-79  (225)
  8 1e91_A Paired amphipathic heli   3.8 1.6E+02  0.0069   12.9  -0.1   27   15-41     56-82  (85)
  9 2ayu_A Nucleosome assembly pro   3.1 3.1E+02   0.013   11.6   0.8   14   22-35    129-142 (417)
 10 3ofo_R 30S ribosomal protein S   3.1   3E+02   0.013   11.7   0.7   22    4-28      3-24  (55)

No 1  
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=10.73  E-value=55  Score=15.20  Aligned_cols=14  Identities=50%  Similarity=0.679  Sum_probs=11.0

Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             96101002444321
Q 537021.9.peg.8    1 MPQRYRDTSLLSKK   14 (41)
Q Consensus         1 mpqryrdtsllskk   14 (41)
                      -|||-||-|...|.
T Consensus         9 c~qrsrd~sam~kh   22 (27)
T 2kvh_A            9 CPQRSRDFSAMTKH   22 (27)
T ss_dssp             SSCEESSHHHHHHH
T ss_pred             CCCCCCCHHHHHHH
T ss_conf             62100338999998


No 2  
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=5.81  E-value=1.3e+02  Score=13.35  Aligned_cols=15  Identities=47%  Similarity=0.767  Sum_probs=12.1

Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             730223467885157
Q 537021.9.peg.8   22 TPLLSKRTEVITGIN   36 (41)
Q Consensus        22 tpllskrtevitgin   36 (41)
                      .|+..+|.++|.||.
T Consensus        35 ~ply~kR~~ii~~IP   49 (193)
T 3kyp_A           35 KPLFEKRDEIIQKIP   49 (193)
T ss_dssp             HHHHHHHHHHHHTST
T ss_pred             CHHHHHHHHHHCCCC
T ss_conf             869999989872485


No 3  
>1jo6_A KCNMB2, potassium large conductance calcium-activated channel, subfamily M, beta member 2..., large; helix, ION channel, cytoplasmic PART of; NMR {Synthetic} SCOP: j.89.1.1
Probab=5.59  E-value=1e+02  Score=13.96  Aligned_cols=15  Identities=47%  Similarity=0.713  Sum_probs=11.1

Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             101002444321122
Q 537021.9.peg.8    3 QRYRDTSLLSKKTEV   17 (41)
Q Consensus         3 qryrdtsllskktev   17 (41)
                      |..|+..||.|+..|
T Consensus        23 QKiRe~DlLdKrkTV   37 (45)
T 1jo6_A           23 QKIRDHDLLDKRKTV   37 (45)
T ss_dssp             HHHHHHHTTTSSSCC
T ss_pred             HHHHHHHHHHHHCEE
T ss_conf             999875677653132


No 4  
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B
Probab=5.13  E-value=1.2e+02  Score=13.63  Aligned_cols=27  Identities=15%  Similarity=0.436  Sum_probs=22.1

Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             122148773022346788515752679
Q 537021.9.peg.8   15 TEVINGETPLLSKRTEVITGINRVMPE   41 (41)
Q Consensus        15 tevingetpllskrtevitginrvmpe   41 (41)
                      .||+..-..|+....+.|.|.|.-+||
T Consensus        62 ~ev~~~V~~Lf~~hpdLi~~Fn~FLP~   88 (89)
T 1g1e_B           62 QEVYAQVARLFKNQEDLLSEFGQFLPD   88 (89)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf             999999999984587999999966879


No 5  
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=5.03  E-value=1.5e+02  Score=13.17  Aligned_cols=12  Identities=33%  Similarity=0.852  Sum_probs=7.8

Q ss_pred             HHHHHHHHHCCC
Q ss_conf             788515752679
Q 537021.9.peg.8   30 EVITGINRVMPE   41 (41)
Q Consensus        30 evitginrvmpe   41 (41)
                      .....+|||||.
T Consensus        34 dL~~Av~~v~Pq   45 (45)
T 3e21_A           34 DLVAAINGVIPQ   45 (45)
T ss_dssp             CHHHHHTTC---
T ss_pred             HHHHHHHHHCCC
T ss_conf             699999876689


No 6  
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3c9d_A 3c9b_A 3dm7_A
Probab=4.28  E-value=1.8e+02  Score=12.69  Aligned_cols=15  Identities=33%  Similarity=0.521  Sum_probs=11.8

Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             730223467885157
Q 537021.9.peg.8   22 TPLLSKRTEVITGIN   36 (41)
Q Consensus        22 tpllskrtevitgin   36 (41)
                      .|++.+|.++|.||.
T Consensus        41 ~P~y~kR~~iI~~IP   55 (264)
T 2zd7_A           41 KPVYEKRDAYIDEIA   55 (264)
T ss_dssp             HHHHHHHHHHHTTCT
T ss_pred             CCHHHHHHHHHCCCC
T ss_conf             969999999980674


No 7  
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=4.19  E-value=1.9e+02  Score=12.59  Aligned_cols=15  Identities=40%  Similarity=0.738  Sum_probs=11.2

Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             730223467885157
Q 537021.9.peg.8   22 TPLLSKRTEVITGIN   36 (41)
Q Consensus        22 tpllskrtevitgin   36 (41)
                      .|++.+|.++|.||-
T Consensus        65 ~ply~kR~~ii~~IP   79 (225)
T 2e50_A           65 QPFFQKRSELIAKIP   79 (225)
T ss_dssp             HHHHHHHHHHHTTST
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             379999988862566


No 8  
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=3.78  E-value=1.6e+02  Score=12.93  Aligned_cols=27  Identities=19%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             122148773022346788515752679
Q 537021.9.peg.8   15 TEVINGETPLLSKRTEVITGINRVMPE   41 (41)
Q Consensus        15 tevingetpllskrtevitginrvmpe   41 (41)
                      .||+.--..|+....+.|.|.|.-+|+
T Consensus        56 ~ev~~~V~~Lf~~hpdLl~~F~~FLP~   82 (85)
T 1e91_A           56 EEVFTEVANLFRGQEDLLSEFGQFLPE   82 (85)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf             999999999984388999999978848


No 9  
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=3.12  E-value=3.1e+02  Score=11.61  Aligned_cols=14  Identities=29%  Similarity=0.748  Sum_probs=8.5

Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             73022346788515
Q 537021.9.peg.8   22 TPLLSKRTEVITGI   35 (41)
Q Consensus        22 tpllskrtevitgi   35 (41)
                      .||..||.++|+|.
T Consensus       129 ~PLy~kR~~IV~G~  142 (417)
T 2ayu_A          129 KPIWEQRSRIISGQ  142 (417)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHCCC
T ss_conf             83999999997588


No 10 
>3ofo_R 30S ribosomal protein S18; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_R* 3iy8_R 2wwl_R 3ofp_R
Probab=3.10  E-value=3e+02  Score=11.66  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=13.2

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             0100244432112214877302234
Q 537021.9.peg.8    4 RYRDTSLLSKKTEVINGETPLLSKR   28 (41)
Q Consensus         4 ryrdtsllskktevingetpllskr   28 (41)
                      -|+|.++|++-   |+..--+++.|
T Consensus         3 dyKn~~~L~~F---is~~GkIlprr   24 (55)
T 3ofo_R            3 DYKDIATLKNY---ITESGKIVPSR   24 (55)
T ss_dssp             CTTCHHHHGGG---BCTTCCBCCHH
T ss_pred             CCCCHHHHHHH---CCCCCEEECCC
T ss_conf             83378999987---69988682875


Done!