Query 537021.9.peg.834_1
Match_columns 42
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Wed May 25 01:22:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_834.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01647 ATPase-IIIA_H plasma 59.5 2.6 6.7E-05 22.8 0.1 19 6-29 561-579 (835)
2 pfam06503 DUF1101 Protein of u 34.3 23 0.00059 18.1 1.6 22 20-41 149-170 (360)
3 KOG0384 consensus 19.9 66 0.0017 15.9 1.7 16 21-36 709-724 (1373)
4 pfam05408 Peptidase_C28 Foot-a 16.0 72 0.0018 15.7 1.2 15 6-20 47-61 (193)
5 PRK09247 ATP-dependent DNA lig 14.4 1.3E+02 0.0033 14.4 2.9 29 5-33 2-30 (537)
6 COG1972 NupC Nucleoside permea 12.3 81 0.0021 15.4 0.6 20 19-38 183-202 (404)
7 KOG2635 consensus 11.6 1.6E+02 0.0041 13.9 2.6 29 1-29 121-149 (512)
8 COG5547 Small integral membran 10.9 1.3E+02 0.0033 14.4 1.3 19 18-36 6-24 (62)
9 cd01053 AOX Alternative oxidas 10.8 1.7E+02 0.0044 13.8 2.2 21 10-30 85-105 (168)
10 pfam05186 Dpy-30 Dpy-30 motif. 10.4 1.2E+02 0.0029 14.6 0.9 12 24-35 30-41 (42)
No 1
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase; InterPro: IPR006534 These sequences represent the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast . ; GO: 0016887 ATPase activity, 0015992 proton transport, 0016021 integral to membrane.
Probab=59.53 E-value=2.6 Score=22.77 Aligned_cols=19 Identities=47% Similarity=1.020 Sum_probs=14.8
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 099999985063036699999999
Q 537021.9.peg.8 6 NFSQLFTYLDIPRHKYRIMGILAE 29 (42)
Q Consensus 6 nfsqlftyldiprhkyrimgilae 29 (42)
.|.|.| |.|||+|.-+|-+
T Consensus 561 GFA~VF-----PEHKY~IVe~LQ~ 579 (835)
T TIGR01647 561 GFAEVF-----PEHKYEIVEILQK 579 (835)
T ss_pred CCCCCC-----CHHHHHHHHHHHC
T ss_conf 830267-----4022465577613
No 2
>pfam06503 DUF1101 Protein of unknown function (DUF1101). This family consists of several hypothetical Fijivirus proteins of unknown function.
Probab=34.28 E-value=23 Score=18.09 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6699999999986345653047
Q 537021.9.peg.8 20 KYRIMGILAEYLIANSFIKSDN 41 (42)
Q Consensus 20 kyrimgilaeyliansfiksdn 41 (42)
-.||+|++|.-+|.|.++|.|-
T Consensus 149 ~Lril~r~aKiviK~~~~k~Dl 170 (360)
T pfam06503 149 ALRILGRIAKIVIKNQYIKVDL 170 (360)
T ss_pred HHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999976323002568
No 3
>KOG0384 consensus
Probab=19.88 E-value=66 Score=15.86 Aligned_cols=16 Identities=44% Similarity=0.783 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6999999999863456
Q 537021.9.peg.8 21 YRIMGILAEYLIANSF 36 (42)
Q Consensus 21 yrimgilaeyliansf 36 (42)
-|...||+|||+--.|
T Consensus 709 VRmLDIL~eYL~~r~y 724 (1373)
T KOG0384 709 VRMLDILAEYLSLRGY 724 (1373)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999997388
No 4
>pfam05408 Peptidase_C28 Foot-and-mouth virus L-proteinase. Corresponds to Merops family C28. Protein fold of the peptidase unit for members of this family resembles that of papain. The leader proteinase of foot and mouth disease virus (FMDV) cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation.
Probab=16.04 E-value=72 Score=15.67 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=11.6
Q ss_pred CHHHHHHHHCCCHHH
Q ss_conf 099999985063036
Q 537021.9.peg.8 6 NFSQLFTYLDIPRHK 20 (42)
Q Consensus 6 nfsqlftyldiprhk 20 (42)
...|||+|.|+|--.
T Consensus 47 allQlfr~vdep~Fd 61 (193)
T pfam05408 47 ALLQLFRYVDEPLFD 61 (193)
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 999999975863100
No 5
>PRK09247 ATP-dependent DNA ligase; Validated
Probab=14.39 E-value=1.3e+02 Score=14.38 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=23.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 10999999850630366999999999863
Q 537021.9.peg.8 5 KNFSQLFTYLDIPRHKYRIMGILAEYLIA 33 (42)
Q Consensus 5 knfsqlftyldiprhkyrimgilaeylia 33 (42)
|.|+.||.-|+-..-.-...-+|++|+-.
T Consensus 2 k~FA~l~e~Le~TtsrleKi~lLa~~f~~ 30 (537)
T PRK09247 2 KAFAELLDRLDATTSTNAKLALLADYFRA 30 (537)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 68999999998716889999999999875
No 6
>COG1972 NupC Nucleoside permease [Nucleotide transport and metabolism]
Probab=12.28 E-value=81 Score=15.40 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 36699999999986345653
Q 537021.9.peg.8 19 HKYRIMGILAEYLIANSFIK 38 (42)
Q Consensus 19 hkyrimgilaeyliansfik 38 (42)
--|--||+-.||+++-||..
T Consensus 183 g~Y~~mgvp~~yllaAs~m~ 202 (404)
T COG1972 183 GGYASMGVPPEYLLAASFMN 202 (404)
T ss_pred HHHHHCCCCHHHHHHHHHHH
T ss_conf 99998079799999999985
No 7
>KOG2635 consensus
Probab=11.57 E-value=1.6e+02 Score=13.93 Aligned_cols=29 Identities=31% Similarity=0.580 Sum_probs=24.3
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 98641099999985063036699999999
Q 537021.9.peg.8 1 MRDNKNFSQLFTYLDIPRHKYRIMGILAE 29 (42)
Q Consensus 1 mrdnknfsqlftyldiprhkyrimgilae 29 (42)
.|+|-|+.|.-||+..--|.-+|.-+.-+
T Consensus 121 yre~v~laQikty~eMdSHEEKi~e~v~~ 149 (512)
T KOG2635 121 YRENVNLAQIKTYLEMDSHEEKIHELVMR 149 (512)
T ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 10342277764332010078999999987
No 8
>COG5547 Small integral membrane protein [Function unknown]
Probab=10.89 E-value=1.3e+02 Score=14.38 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 0366999999999863456
Q 537021.9.peg.8 18 RHKYRIMGILAEYLIANSF 36 (42)
Q Consensus 18 rhkyrimgilaeyliansf 36 (42)
..||+|.|-|+--+||--+
T Consensus 6 ~fkypIIgglvglliAili 24 (62)
T COG5547 6 KFKYPIIGGLVGLLIAILI 24 (62)
T ss_pred HHCCCHHHHHHHHHHHHHH
T ss_conf 7163359999999999999
No 9
>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain. Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular
Probab=10.76 E-value=1.7e+02 Score=13.78 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=17.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999850630366999999999
Q 537021.9.peg.8 10 LFTYLDIPRHKYRIMGILAEY 30 (42)
Q Consensus 10 lftyldiprhkyrimgilaey 30 (42)
.+.|+--||--||++|-+.|-
T Consensus 85 ~~~YlvsPr~ahr~vgylEee 105 (168)
T cd01053 85 FLLYLISPRLAHRFVGYLEEE 105 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999996599999999999999
No 10
>pfam05186 Dpy-30 Dpy-30 motif. This motif is found in a wide variety of domain contexts. It is found in the Dpy-30 proteins hence the motifs name. It is about 40 residues long and is probably formed of two alpha-helices. It may be a dimerization motif analogous to pfam02197 (Bateman A pers obs).
Probab=10.38 E-value=1.2e+02 Score=14.65 Aligned_cols=12 Identities=50% Similarity=0.847 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999986345
Q 537021.9.peg.8 24 MGILAEYLIANS 35 (42)
Q Consensus 24 mgilaeylians 35 (42)
...||+||+.|+
T Consensus 30 i~~La~~Llk~~ 41 (42)
T pfam05186 30 IEFLAEYLLKNR 41 (42)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997717
Done!