Query 537021.9.peg.834_1 Match_columns 42 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 00:45:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_834.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1qmy_A Protease, leader prote 11.8 94 0.0028 14.8 1.2 15 7-21 28-42 (167) 2 >1yi8_B Tryptophanyl-tRNA synt 11.2 58 0.0017 15.8 -0.1 11 9-19 15-25 (42) 3 >1upk_A MO25 protein; transfer 9.1 1.7E+02 0.0051 13.4 2.0 10 25-34 32-41 (86) 4 >2nml_A Enhancer of rudimentar 8.2 1.6E+02 0.0048 13.6 1.2 11 5-15 52-62 (104) 5 >1hqm_D DNA-directed RNA polym 7.7 1.5E+02 0.0043 13.8 0.9 17 26-42 73-89 (89) 6 >2wx4_A DCP1, decapping protei 6.4 2.3E+02 0.0067 12.9 1.3 11 5-15 12-22 (46) 7 >2w45_A Nuclease, alkaline exo 6.2 2.4E+02 0.0072 12.7 2.9 26 16-41 255-280 (376) 8 >1w27_A Phenylalanine ammonia- 6.0 2.5E+02 0.0074 12.7 1.7 29 10-38 43-72 (118) 9 >3g36_A Protein DPY-30 homolog 5.9 2.5E+02 0.0075 12.6 1.8 12 24-35 37-48 (55) 10 >3fvc_A GP115, glycoprotein GP 5.8 2.6E+02 0.0076 12.6 2.8 27 3-29 183-210 (226) No 1 >>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} (A:) Probab=11.80 E-value=94 Score=14.77 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=11.8 Q ss_pred HHHHHHHHCCCHHHH Q ss_conf 999999850630366 Q 537021.9.peg.8 7 FSQLFTYLDIPRHKY 21 (42) Q Consensus 7 fsqlftyldiprhky 21 (42) .-|||.|+|.|--+. T Consensus 28 ilQLfryvdepfFd~ 42 (167) T 1qmy_A 28 ILQLFRYVEEPFFDW 42 (167) T ss_dssp HHHHHHHHTCCTTHH T ss_pred HHHHHHHCCCCCHHH T ss_conf 999998717530121 No 2 >>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A* (B:245-286) Probab=11.22 E-value=58 Score=15.82 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=7.8 Q ss_pred HHHHHHCCCHH Q ss_conf 99998506303 Q 537021.9.peg.8 9 QLFTYLDIPRH 19 (42) Q Consensus 9 qlftyldiprh 19 (42) -.|||||+=-- T Consensus 15 ~VFtYlDaF~p 25 (42) T 1yi8_B 15 PVFTFLDAFDP 25 (42) T ss_dssp TTHHHHHHHCS T ss_pred HHHHHHHHHHH T ss_conf 79999988600 No 3 >>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} (A:166-251) Probab=9.06 E-value=1.7e+02 Score=13.44 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=7.1 Q ss_pred HHHHHHHHHH Q ss_conf 9999998634 Q 537021.9.peg.8 25 GILAEYLIAN 34 (42) Q Consensus 25 gilaeylian 34 (42) .+.||||-.| T Consensus 32 ~lvaefl~~N 41 (86) T 1upk_A 32 LLSAEFLEQH 41 (86) T ss_dssp HHHHHHHHHT T ss_pred HHHHHHHHHH T ss_conf 9999999986 No 4 >>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} (A:) Probab=8.15 E-value=1.6e+02 Score=13.60 Aligned_cols=11 Identities=45% Similarity=0.896 Sum_probs=8.6 Q ss_pred CCHHHHHHHHC Q ss_conf 10999999850 Q 537021.9.peg.8 5 KNFSQLFTYLD 15 (42) Q Consensus 5 knfsqlftyld 15 (42) -+.||||.|+| T Consensus 52 Ydi~~Lf~FID 62 (104) T 2nml_A 52 YDISQLFDFID 62 (104) T ss_dssp CCHHHHHHHHH T ss_pred CCHHHHHHHHH T ss_conf 05999999986 No 5 >>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} (D:101-134,D:194-248) Probab=7.66 E-value=1.5e+02 Score=13.81 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHCCCC Q ss_conf 99999863456530479 Q 537021.9.peg.8 26 ILAEYLIANSFIKSDNR 42 (42) Q Consensus 26 ilaeyliansfiksdnr 42 (42) +.-.--+..+|++|+|| T Consensus 73 liKRLkive~F~~SgnK 89 (89) T 1hqm_D 73 ARKRLEVVRAFLDSGNR 89 (89) T ss_dssp HHHHHHHHHHHHSSSCS T ss_pred HHHHHHHHHHCCCCCCC T ss_conf 88889999836102899 No 6 >>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster} (A:) Probab=6.43 E-value=2.3e+02 Score=12.89 Aligned_cols=11 Identities=55% Similarity=0.782 Sum_probs=8.2 Q ss_pred CCHHHHHHHHC Q ss_conf 10999999850 Q 537021.9.peg.8 5 KNFSQLFTYLD 15 (42) Q Consensus 5 knfsqlftyld 15 (42) ..|-|-|+||- T Consensus 12 ~Q~vQAf~YLi 22 (46) T 2wx4_A 12 TQFVQAFTYLI 22 (46) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 89999999999 No 7 >>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A (A:95-470) Probab=6.16 E-value=2.4e+02 Score=12.71 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=20.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 63036699999999986345653047 Q 537021.9.peg.8 16 IPRHKYRIMGILAEYLIANSFIKSDN 41 (42) Q Consensus 16 iprhkyrimgilaeyliansfiksdn 41 (42) -|||.|----++--|.+++-|+-||. T Consensus 255 nPrH~~~~qi~~q~~v~~~~~~~~~~ 280 (376) T 2w45_A 255 NPRHNYFYQVLLQYKIVGDYVRHSGG 280 (376) T ss_dssp CTTSHHHHHHHHHHHHHHHHHHTTTC T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 78873556668899988634066676 No 8 >>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} (A:531-648) Probab=5.99 E-value=2.5e+02 Score=12.66 Aligned_cols=29 Identities=28% Similarity=0.584 Sum_probs=21.4 Q ss_pred HHHHHCCCH-HHHHHHHHHHHHHHHHHHHH Q ss_conf 999850630-36699999999986345653 Q 537021.9.peg.8 10 LFTYLDIPR-HKYRIMGILAEYLIANSFIK 38 (42) Q Consensus 10 lftyldipr-hkyrimgilaeyliansfik 38 (42) .|+|.|-|- ..|-.|--|-.-|+...+.. T Consensus 43 VFsYiDDPcs~tYPLMqKLRqVLVehAL~n 72 (118) T 1w27_A 43 IFAYIDDPCSATYPLMQKLRQTLVEHALKN 72 (118) T ss_dssp GGGTTTSTTCTTSHHHHHHHHHHHHHHHTS T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 777326852112368999999999998623 No 9 >>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens} (A:) Probab=5.91 E-value=2.5e+02 Score=12.64 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999986345 Q 537021.9.peg.8 24 MGILAEYLIANS 35 (42) Q Consensus 24 mgilaeylians 35 (42) ...||+||+.++ T Consensus 37 i~~La~~Ll~~~ 48 (55) T 3g36_A 37 IEFLASYLLKNK 48 (55) T ss_dssp HHHHHHHHHHHG T ss_pred HHHHHHHHHHCC T ss_conf 999999998729 No 10 >>3fvc_A GP115, glycoprotein GP110; viral fusion protein, PH domains, fusion loops, late protein, membrane, transmembrane, viral protein; HET: NAG; 3.20A {Human herpesvirus 4} (A:47-67,A:271-475) Probab=5.80 E-value=2.6e+02 Score=12.60 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=0.0 Q ss_pred CCCCHHHH-HHHHCCCHHHHHHHHHHHH Q ss_conf 64109999-9985063036699999999 Q 537021.9.peg.8 3 DNKNFSQL-FTYLDIPRHKYRIMGILAE 29 (42) Q Consensus 3 dnknfsql-ftyldiprhkyrimgilae 29 (42) .+-.|.|| |||=.|-.|--+..|-||+ T Consensus 183 ~sv~~AQLQFtYD~LR~~IN~~L~~IA~ 210 (226) T 3fvc_A 183 NNPATVQIQFAYDSLRRQINRMLGDLAR 210 (226) T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2157888889899999999999999999 Done!