Query         537021.9.peg.834_1
Match_columns 42
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 00:45:18 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_834.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1qmy_A Protease, leader prote  11.8      94  0.0028   14.8   1.2   15    7-21     28-42  (167)
  2 >1yi8_B Tryptophanyl-tRNA synt  11.2      58  0.0017   15.8  -0.1   11    9-19     15-25  (42)
  3 >1upk_A MO25 protein; transfer   9.1 1.7E+02  0.0051   13.4   2.0   10   25-34     32-41  (86)
  4 >2nml_A Enhancer of rudimentar   8.2 1.6E+02  0.0048   13.6   1.2   11    5-15     52-62  (104)
  5 >1hqm_D DNA-directed RNA polym   7.7 1.5E+02  0.0043   13.8   0.9   17   26-42     73-89  (89)
  6 >2wx4_A DCP1, decapping protei   6.4 2.3E+02  0.0067   12.9   1.3   11    5-15     12-22  (46)
  7 >2w45_A Nuclease, alkaline exo   6.2 2.4E+02  0.0072   12.7   2.9   26   16-41    255-280 (376)
  8 >1w27_A Phenylalanine ammonia-   6.0 2.5E+02  0.0074   12.7   1.7   29   10-38     43-72  (118)
  9 >3g36_A Protein DPY-30 homolog   5.9 2.5E+02  0.0075   12.6   1.8   12   24-35     37-48  (55)
 10 >3fvc_A GP115, glycoprotein GP   5.8 2.6E+02  0.0076   12.6   2.8   27    3-29    183-210 (226)

No 1  
>>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} (A:)
Probab=11.80  E-value=94  Score=14.77  Aligned_cols=15  Identities=33%  Similarity=0.687  Sum_probs=11.8

Q ss_pred             HHHHHHHHCCCHHHH
Q ss_conf             999999850630366
Q 537021.9.peg.8    7 FSQLFTYLDIPRHKY   21 (42)
Q Consensus         7 fsqlftyldiprhky   21 (42)
                      .-|||.|+|.|--+.
T Consensus        28 ilQLfryvdepfFd~   42 (167)
T 1qmy_A           28 ILQLFRYVEEPFFDW   42 (167)
T ss_dssp             HHHHHHHHTCCTTHH
T ss_pred             HHHHHHHCCCCCHHH
T ss_conf             999998717530121


No 2  
>>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A* (B:245-286)
Probab=11.22  E-value=58  Score=15.82  Aligned_cols=11  Identities=36%  Similarity=0.573  Sum_probs=7.8

Q ss_pred             HHHHHHCCCHH
Q ss_conf             99998506303
Q 537021.9.peg.8    9 QLFTYLDIPRH   19 (42)
Q Consensus         9 qlftyldiprh   19 (42)
                      -.|||||+=--
T Consensus        15 ~VFtYlDaF~p   25 (42)
T 1yi8_B           15 PVFTFLDAFDP   25 (42)
T ss_dssp             TTHHHHHHHCS
T ss_pred             HHHHHHHHHHH
T ss_conf             79999988600


No 3  
>>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} (A:166-251)
Probab=9.06  E-value=1.7e+02  Score=13.44  Aligned_cols=10  Identities=30%  Similarity=0.325  Sum_probs=7.1

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999998634
Q 537021.9.peg.8   25 GILAEYLIAN   34 (42)
Q Consensus        25 gilaeylian   34 (42)
                      .+.||||-.|
T Consensus        32 ~lvaefl~~N   41 (86)
T 1upk_A           32 LLSAEFLEQH   41 (86)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
T ss_conf             9999999986


No 4  
>>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} (A:)
Probab=8.15  E-value=1.6e+02  Score=13.60  Aligned_cols=11  Identities=45%  Similarity=0.896  Sum_probs=8.6

Q ss_pred             CCHHHHHHHHC
Q ss_conf             10999999850
Q 537021.9.peg.8    5 KNFSQLFTYLD   15 (42)
Q Consensus         5 knfsqlftyld   15 (42)
                      -+.||||.|+|
T Consensus        52 Ydi~~Lf~FID   62 (104)
T 2nml_A           52 YDISQLFDFID   62 (104)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
T ss_conf             05999999986


No 5  
>>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} (D:101-134,D:194-248)
Probab=7.66  E-value=1.5e+02  Score=13.81  Aligned_cols=17  Identities=24%  Similarity=0.391  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             99999863456530479
Q 537021.9.peg.8   26 ILAEYLIANSFIKSDNR   42 (42)
Q Consensus        26 ilaeyliansfiksdnr   42 (42)
                      +.-.--+..+|++|+||
T Consensus        73 liKRLkive~F~~SgnK   89 (89)
T 1hqm_D           73 ARKRLEVVRAFLDSGNR   89 (89)
T ss_dssp             HHHHHHHHHHHHSSSCS
T ss_pred             HHHHHHHHHHCCCCCCC
T ss_conf             88889999836102899


No 6  
>>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster} (A:)
Probab=6.43  E-value=2.3e+02  Score=12.89  Aligned_cols=11  Identities=55%  Similarity=0.782  Sum_probs=8.2

Q ss_pred             CCHHHHHHHHC
Q ss_conf             10999999850
Q 537021.9.peg.8    5 KNFSQLFTYLD   15 (42)
Q Consensus         5 knfsqlftyld   15 (42)
                      ..|-|-|+||-
T Consensus        12 ~Q~vQAf~YLi   22 (46)
T 2wx4_A           12 TQFVQAFTYLI   22 (46)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             89999999999


No 7  
>>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A (A:95-470)
Probab=6.16  E-value=2.4e+02  Score=12.71  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=20.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             63036699999999986345653047
Q 537021.9.peg.8   16 IPRHKYRIMGILAEYLIANSFIKSDN   41 (42)
Q Consensus        16 iprhkyrimgilaeyliansfiksdn   41 (42)
                      -|||.|----++--|.+++-|+-||.
T Consensus       255 nPrH~~~~qi~~q~~v~~~~~~~~~~  280 (376)
T 2w45_A          255 NPRHNYFYQVLLQYKIVGDYVRHSGG  280 (376)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             78873556668899988634066676


No 8  
>>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} (A:531-648)
Probab=5.99  E-value=2.5e+02  Score=12.66  Aligned_cols=29  Identities=28%  Similarity=0.584  Sum_probs=21.4

Q ss_pred             HHHHHCCCH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf             999850630-36699999999986345653
Q 537021.9.peg.8   10 LFTYLDIPR-HKYRIMGILAEYLIANSFIK   38 (42)
Q Consensus        10 lftyldipr-hkyrimgilaeyliansfik   38 (42)
                      .|+|.|-|- ..|-.|--|-.-|+...+..
T Consensus        43 VFsYiDDPcs~tYPLMqKLRqVLVehAL~n   72 (118)
T 1w27_A           43 IFAYIDDPCSATYPLMQKLRQTLVEHALKN   72 (118)
T ss_dssp             GGGTTTSTTCTTSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             777326852112368999999999998623


No 9  
>>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens} (A:)
Probab=5.91  E-value=2.5e+02  Score=12.64  Aligned_cols=12  Identities=42%  Similarity=0.761  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999986345
Q 537021.9.peg.8   24 MGILAEYLIANS   35 (42)
Q Consensus        24 mgilaeylians   35 (42)
                      ...||+||+.++
T Consensus        37 i~~La~~Ll~~~   48 (55)
T 3g36_A           37 IEFLASYLLKNK   48 (55)
T ss_dssp             HHHHHHHHHHHG
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999998729


No 10 
>>3fvc_A GP115, glycoprotein GP110; viral fusion protein, PH domains, fusion loops, late protein, membrane, transmembrane, viral protein; HET: NAG; 3.20A {Human herpesvirus 4} (A:47-67,A:271-475)
Probab=5.80  E-value=2.6e+02  Score=12.60  Aligned_cols=27  Identities=33%  Similarity=0.534  Sum_probs=0.0

Q ss_pred             CCCCHHHH-HHHHCCCHHHHHHHHHHHH
Q ss_conf             64109999-9985063036699999999
Q 537021.9.peg.8    3 DNKNFSQL-FTYLDIPRHKYRIMGILAE   29 (42)
Q Consensus         3 dnknfsql-ftyldiprhkyrimgilae   29 (42)
                      .+-.|.|| |||=.|-.|--+..|-||+
T Consensus       183 ~sv~~AQLQFtYD~LR~~IN~~L~~IA~  210 (226)
T 3fvc_A          183 NNPATVQIQFAYDSLRRQINRMLGDLAR  210 (226)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2157888889899999999999999999


Done!