RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.834_1
         (42 letters)



>gnl|CDD|177626 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
          Length = 267

 Score = 24.8 bits (55), Expect = 5.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 1  MRDNKNFSQLFTYLDIPRHKYRIM 24
          M+DN NF +L+  +   +    IM
Sbjct: 65 MKDNPNFIKLYYSVTTLKGHVLIM 88


>gnl|CDD|162462 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
           ATPase.  This model describes the plasma membrane proton
           efflux P-type ATPase found in plants, fungi, protozoa,
           slime molds and archaea. The best studied representative
           is from yeast.
          Length = 755

 Score = 24.2 bits (53), Expect = 6.9
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 5/24 (20%)

Query: 7   FSQLFTYLDIPRHKYRIMGILAEY 30
           F+++F     P HKY I+ IL + 
Sbjct: 515 FAEVF-----PEHKYEIVEILQKR 533


>gnl|CDD|183169 PRK11511, PRK11511, DNA-binding transcriptional activator MarA;
           Provisional.
          Length = 127

 Score = 23.9 bits (51), Expect = 8.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 13  YLDIPRHKYRIMGILAE 29
           Y D+P HKYR+  +  E
Sbjct: 99  YFDVPPHKYRMTNMQGE 115


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.142    0.411 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 670,180
Number of extensions: 23554
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 9
Length of query: 42
Length of database: 5,994,473
Length adjustment: 16
Effective length of query: 26
Effective length of database: 5,648,745
Effective search space: 146867370
Effective search space used: 146867370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.1 bits)