RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.834_1 (42 letters) >gnl|CDD|177626 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional. Length = 267 Score = 24.8 bits (55), Expect = 5.4 Identities = 8/24 (33%), Positives = 13/24 (54%) Query: 1 MRDNKNFSQLFTYLDIPRHKYRIM 24 M+DN NF +L+ + + IM Sbjct: 65 MKDNPNFIKLYYSVTTLKGHVLIM 88 >gnl|CDD|162462 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast. Length = 755 Score = 24.2 bits (53), Expect = 6.9 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 5/24 (20%) Query: 7 FSQLFTYLDIPRHKYRIMGILAEY 30 F+++F P HKY I+ IL + Sbjct: 515 FAEVF-----PEHKYEIVEILQKR 533 >gnl|CDD|183169 PRK11511, PRK11511, DNA-binding transcriptional activator MarA; Provisional. Length = 127 Score = 23.9 bits (51), Expect = 8.9 Identities = 8/17 (47%), Positives = 11/17 (64%) Query: 13 YLDIPRHKYRIMGILAE 29 Y D+P HKYR+ + E Sbjct: 99 YFDVPPHKYRMTNMQGE 115 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.328 0.142 0.411 Gapped Lambda K H 0.267 0.0720 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 670,180 Number of extensions: 23554 Number of successful extensions: 66 Number of sequences better than 10.0: 1 Number of HSP's gapped: 66 Number of HSP's successfully gapped: 9 Length of query: 42 Length of database: 5,994,473 Length adjustment: 16 Effective length of query: 26 Effective length of database: 5,648,745 Effective search space: 146867370 Effective search space used: 146867370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 50 (23.1 bits)