Query 537021.9.peg.851_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Wed May 25 00:35:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_851.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA00691 hypothetical protein 32.9 44 0.0011 16.7 2.9 25 10-34 9-33 (68)
2 pfam10902 DUF2693 Protein of u 28.9 53 0.0013 16.3 2.7 18 16-33 5-22 (83)
3 pfam11210 DUF2996 Protein of u 19.0 47 0.0012 16.6 0.8 11 12-22 58-68 (118)
4 cd06879 PX_UP1_plant The phosp 15.9 75 0.0019 15.5 1.3 16 19-34 41-56 (138)
5 pfam06016 Reovirus_L2 Reovirus 15.8 77 0.002 15.4 1.3 15 19-33 1145-1159(1289)
6 pfam00886 Ribosomal_S16 Riboso 13.9 1.1E+02 0.0028 14.6 1.7 12 20-31 5-16 (58)
7 pfam11493 TSP9 Thylakoid solub 12.9 58 0.0015 16.1 0.0 18 3-27 15-32 (80)
8 COG4921 Uncharacterized protei 12.7 1.4E+02 0.0035 14.1 1.9 14 20-33 14-27 (131)
9 COG0228 RpsP Ribosomal protein 12.6 1.1E+02 0.0029 14.5 1.4 12 19-30 11-22 (87)
10 CHL00005 rps16 ribosomal prote 11.7 1.3E+02 0.0034 14.2 1.6 12 20-31 12-23 (82)
No 1
>PHA00691 hypothetical protein
Probab=32.87 E-value=44 Score=16.67 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=19.3
Q ss_pred CCCCEEEEEEECCCEEEEEEEEEEE
Q ss_conf 1464599999626627999999986
Q 537021.9.peg.8 10 LHENFWLFFLKKDDFYRIMVCVISL 34 (38)
Q Consensus 10 lhenfwlfflkkddfyrimvcvisl 34 (38)
-|||=-.+.|||.|.|.+||.-..-
T Consensus 9 ~~ENGr~WVL~K~~~Y~V~vSG~TH 33 (68)
T PHA00691 9 AYENGRVWVLKKSDSYTVFVSGVTH 33 (68)
T ss_pred HCCCCEEEEEEECCCEEEEEECCCC
T ss_conf 0037618999827827999862432
No 2
>pfam10902 DUF2693 Protein of unknown function (DUF2693). This viral family of proteins has no known function.
Probab=28.89 E-value=53 Score=16.28 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.7
Q ss_pred EEEEECCCEEEEEEEEEE
Q ss_conf 999962662799999998
Q 537021.9.peg.8 16 LFFLKKDDFYRIMVCVIS 33 (38)
Q Consensus 16 lfflkkddfyrimvcvis 33 (38)
+-|-|.|.-.|.|.|-..
T Consensus 5 V~F~K~DGt~R~M~cTld 22 (83)
T pfam10902 5 VVFEKADGTIRVMQATRD 22 (83)
T ss_pred EEEEECCCCEEEEEEECC
T ss_conf 999963898899998638
No 3
>pfam11210 DUF2996 Protein of unknown function (DUF2996). This family of proteins has no known function.
Probab=19.00 E-value=47 Score=16.56 Aligned_cols=11 Identities=45% Similarity=1.117 Sum_probs=9.0
Q ss_pred CCEEEEEEECC
Q ss_conf 64599999626
Q 537021.9.peg.8 12 ENFWLFFLKKD 22 (38)
Q Consensus 12 enfwlfflkkd 22 (38)
-+||++|.+.|
T Consensus 58 r~Fwl~F~~~d 68 (118)
T pfam11210 58 RRFWLCFPEED 68 (118)
T ss_pred CEEEEEECHHH
T ss_conf 78999936110
No 4
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=15.88 E-value=75 Score=15.48 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=12.2
Q ss_pred EECCCEEEEEEEEEEE
Q ss_conf 9626627999999986
Q 537021.9.peg.8 19 LKKDDFYRIMVCVISL 34 (38)
Q Consensus 19 lkkddfyrimvcvisl 34 (38)
.-.|+|||+-|-+-|-
T Consensus 41 ~~~~~fyrvqvgiqSP 56 (138)
T cd06879 41 NAVDKFYRVQVGVQSP 56 (138)
T ss_pred CCCCCEEEEEEECCCC
T ss_conf 2333168899843587
No 5
>pfam06016 Reovirus_L2 Reovirus core-spike protein lambda-2 (L2). This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts.
Probab=15.75 E-value=77 Score=15.42 Aligned_cols=15 Identities=40% Similarity=0.780 Sum_probs=11.0
Q ss_pred EECCCEEEEEEEEEE
Q ss_conf 962662799999998
Q 537021.9.peg.8 19 LKKDDFYRIMVCVIS 33 (38)
Q Consensus 19 lkkddfyrimvcvis 33 (38)
+.-|++||.|||+.+
T Consensus 1145 i~~dpyY~lavfv~~ 1159 (1289)
T pfam06016 1145 ITCDPYYRLAVFVVS 1159 (1289)
T ss_pred EEECCHHHEEEEEEE
T ss_conf 463524517899987
No 6
>pfam00886 Ribosomal_S16 Ribosomal protein S16.
Probab=13.93 E-value=1.1e+02 Score=14.62 Aligned_cols=12 Identities=58% Similarity=0.874 Sum_probs=9.4
Q ss_pred ECCCEEEEEEEE
Q ss_conf 626627999999
Q 537021.9.peg.8 20 KKDDFYRIMVCV 31 (38)
Q Consensus 20 kkddfyrimvcv 31 (38)
|+.-||||.|.-
T Consensus 5 k~~P~YrIVv~d 16 (58)
T pfam00886 5 KKRPFYRIVVAD 16 (58)
T ss_pred CCCCEEEEEEEE
T ss_conf 789868999974
No 7
>pfam11493 TSP9 Thylakoid soluble phosphoprotein TSP9. The plant-specific protein, TSP9 is phosphorylated and released in response to changing light conditions from the photosynthetic membrane. The protein resembles the characteristics of transcription/translation regulatory factors. The structure of the protein is predicted to consist of a random coil.
Probab=12.89 E-value=58 Score=16.08 Aligned_cols=18 Identities=56% Similarity=1.198 Sum_probs=12.7
Q ss_pred HHHHHHHCCCCEEEEEEECCCEEEE
Q ss_conf 3131340146459999962662799
Q 537021.9.peg.8 3 LYDYILGLHENFWLFFLKKDDFYRI 27 (38)
Q Consensus 3 lydyilglhenfwlfflkkddfyri 27 (38)
+.|+||| |..|.|.||..
T Consensus 15 ~~D~ilG-------~l~KedQfyET 32 (80)
T pfam11493 15 LFDFILG-------FITKEDQFYET 32 (80)
T ss_pred HHHHHHH-------HHHHHHHCEEC
T ss_conf 7999986-------32201010014
No 8
>COG4921 Uncharacterized protein conserved in archaea [Function unknown]
Probab=12.71 E-value=1.4e+02 Score=14.08 Aligned_cols=14 Identities=36% Similarity=0.866 Sum_probs=11.0
Q ss_pred ECCCEEEEEEEEEE
Q ss_conf 62662799999998
Q 537021.9.peg.8 20 KKDDFYRIMVCVIS 33 (38)
Q Consensus 20 kkddfyrimvcvis 33 (38)
.+|.|||+..||..
T Consensus 14 e~Dg~yrV~A~V~~ 27 (131)
T COG4921 14 EEDGHYRVTACVSA 27 (131)
T ss_pred CCCCEEEEEEEEEE
T ss_conf 33643899988999
No 9
>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=12.62 E-value=1.1e+02 Score=14.53 Aligned_cols=12 Identities=58% Similarity=0.897 Sum_probs=9.4
Q ss_pred EECCCEEEEEEE
Q ss_conf 962662799999
Q 537021.9.peg.8 19 LKKDDFYRIMVC 30 (38)
Q Consensus 19 lkkddfyrimvc 30 (38)
-||.-||||.|.
T Consensus 11 ~kk~P~YrIVVa 22 (87)
T COG0228 11 SKKRPFYRIVVA 22 (87)
T ss_pred CCCCCEEEEEEE
T ss_conf 766984799984
No 10
>CHL00005 rps16 ribosomal protein S16
Probab=11.74 E-value=1.3e+02 Score=14.15 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=9.3
Q ss_pred ECCCEEEEEEEE
Q ss_conf 626627999999
Q 537021.9.peg.8 20 KKDDFYRIMVCV 31 (38)
Q Consensus 20 kkddfyrimvcv 31 (38)
|+.-||||.|.-
T Consensus 12 kk~P~YrIVv~d 23 (82)
T CHL00005 12 KQQAVYRIVAID 23 (82)
T ss_pred CCCCEEEEEEEE
T ss_conf 889826899873
Done!