Query 537021.9.peg.851_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 02:44:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_851.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1ej6_A Lambda2; icosahedral, 28.5 11 0.00032 19.6 -0.5 14 19-32 22-35 (96)
2 >1nh2_D Transcription initiati 13.6 1.2E+02 0.0034 14.1 3.1 16 10-25 15-30 (66)
3 >2vbc_A Dengue 4 NS3 FULL-leng 13.4 87 0.0026 14.8 1.4 14 17-30 15-28 (87)
4 >3h9v_A P2X purinoceptor; puri 10.5 56 0.0017 15.8 -0.3 14 15-28 53-66 (74)
5 >3i1m_P 30S ribosomal protein 9.8 1.3E+02 0.0039 13.8 1.4 12 20-31 12-23 (82)
6 >2fom_B Polyprotein; flaviviru 9.4 1.5E+02 0.0045 13.5 1.5 16 17-32 15-30 (185)
7 >1nvp_D Transcription initiati 9.3 1.6E+02 0.0048 13.3 1.7 15 10-24 14-28 (56)
8 >2wv9_A Flavivirin protease NS 8.5 1.8E+02 0.0052 13.1 1.6 16 17-32 69-84 (231)
9 >2h7a_A Hypothetical protein Y 7.4 60 0.0018 15.6 -1.2 24 4-27 17-40 (110)
10 >2fp7_B Polyprotein; flaviviru 7.2 1.6E+02 0.0046 13.4 0.8 10 21-30 4-13 (172)
No 1
>>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} (A:1124-1219)
Probab=28.53 E-value=11 Score=19.57 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=10.7
Q ss_pred EECCCEEEEEEEEE
Q ss_conf 96266279999999
Q 537021.9.peg.8 19 LKKDDFYRIMVCVI 32 (38)
Q Consensus 19 lkkddfyrimvcvi 32 (38)
..-|.|||.||||.
T Consensus 22 I~cdpyYrL~v~v~ 35 (96)
T 1ej6_A 22 ITVNPYYRLMTFVR 35 (96)
T ss_dssp EEECTTSCCCEEEE
T ss_pred EEECCHHHEEEEEE
T ss_conf 47442350789999
No 2
>>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} (D:56-121)
Probab=13.59 E-value=1.2e+02 Score=14.12 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=12.6
Q ss_pred CCCCEEEEEEECCCEE
Q ss_conf 1464599999626627
Q 537021.9.peg.8 10 LHENFWLFFLKKDDFY 25 (38)
Q Consensus 10 lhenfwlfflkkddfy 25 (38)
.-+|-|-|.++.-.|-
T Consensus 15 FCDnVWTFiiknv~fk 30 (66)
T 1nh2_D 15 FCDDVWTFIVKNCQVT 30 (66)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred CCCCEEEEEEECEEEE
T ss_conf 1375799998566997
No 3
>>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:1-87)
Probab=13.37 E-value=87 Score=14.78 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=10.8
Q ss_pred EEEECCCEEEEEEE
Q ss_conf 99962662799999
Q 537021.9.peg.8 17 FFLKKDDFYRIMVC 30 (38)
Q Consensus 17 fflkkddfyrimvc 30 (38)
++-.+|-.||||.-
T Consensus 15 ~~~l~dGvYRI~~~ 28 (87)
T 2vbc_A 15 KATLSEGVYRIMQR 28 (87)
T ss_dssp ----CCEEEEEEEC
T ss_pred CCCCCCCEEEEEEC
T ss_conf 76268964898754
No 4
>>3h9v_A P2X purinoceptor; purinergic receptor, ION channel, closed state, APO state, ION transport, ionic channel, receptor, transmembrane, transport; HET: NAG; 3.10A {Danio rerio} PDB: 3i5d_A* (A:1-27,A:310-356)
Probab=10.51 E-value=56 Score=15.78 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=11.0
Q ss_pred EEEEEECCCEEEEE
Q ss_conf 99999626627999
Q 537021.9.peg.8 15 WLFFLKKDDFYRIM 28 (38)
Q Consensus 15 wlfflkkddfyrim 28 (38)
-|.++||.+|||-.
T Consensus 53 lLy~lkKr~~Yr~k 66 (74)
T 3h9v_A 53 VLTFMKRKQHYKEQ 66 (74)
T ss_dssp CC------------
T ss_pred HHHHHCHHHHHHHH
T ss_conf 99841214566662
No 5
>>3i1m_P 30S ribosomal protein S16; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ... (P:)
Probab=9.83 E-value=1.3e+02 Score=13.80 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=9.1
Q ss_pred ECCCEEEEEEEE
Q ss_conf 626627999999
Q 537021.9.peg.8 20 KKDDFYRIMVCV 31 (38)
Q Consensus 20 kkddfyrimvcv 31 (38)
|+.-||||.|+-
T Consensus 12 k~~P~YrIVv~d 23 (82)
T 3i1m_P 12 KKRPFYQVVVAD 23 (82)
T ss_dssp TTSCCEEEEEEE
T ss_pred CCCCEEEEEEEE
T ss_conf 899858999966
No 6
>>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein/protease complex; 1.50A {Dengue virus 2} (B:)
Probab=9.42 E-value=1.5e+02 Score=13.48 Aligned_cols=16 Identities=31% Similarity=0.100 Sum_probs=11.5
Q ss_pred EEEECCCEEEEEEEEE
Q ss_conf 9996266279999999
Q 537021.9.peg.8 17 FFLKKDDFYRIMVCVI 32 (38)
Q Consensus 17 fflkkddfyrimvcvi 32 (38)
++--+|-.||||.+-+
T Consensus 15 ~~~~~~GvyRi~~~~l 30 (185)
T 2fom_B 15 KAELEDGAYRIKQKGI 30 (185)
T ss_dssp ---CCSEEEEEEEEET
T ss_pred CCCCCCCEEEEEECCC
T ss_conf 4625795489872654
No 7
>>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} (D:53-108)
Probab=9.30 E-value=1.6e+02 Score=13.32 Aligned_cols=15 Identities=33% Similarity=0.875 Sum_probs=11.4
Q ss_pred CCCCEEEEEEECCCE
Q ss_conf 146459999962662
Q 537021.9.peg.8 10 LHENFWLFFLKKDDF 24 (38)
Q Consensus 10 lhenfwlfflkkddf 24 (38)
.-+|.|-|.++.-.|
T Consensus 14 fCDnVWTFil~d~~f 28 (56)
T 1nvp_D 14 FCDNVWTFVLNDVEF 28 (56)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred EECCEEEEEEECEEE
T ss_conf 446589999856498
No 8
>>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:1-231)
Probab=8.48 E-value=1.8e+02 Score=13.13 Aligned_cols=16 Identities=31% Similarity=0.139 Sum_probs=11.8
Q ss_pred EEEECCCEEEEEEEEE
Q ss_conf 9996266279999999
Q 537021.9.peg.8 17 FFLKKDDFYRIMVCVI 32 (38)
Q Consensus 17 fflkkddfyrimvcvi 32 (38)
++--+|-.||||.+-+
T Consensus 69 ~~~~~dGvYRi~~~~l 84 (231)
T 2wv9_A 69 KGDTTPGVYRIMARGI 84 (231)
T ss_dssp ----CSEEEEEEEECS
T ss_pred CCCCCCCEEEEEECCC
T ss_conf 6758896289983445
No 9
>>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/beta/alpha) sandwich; NMR {Escherichia coli CFT073} (A:)
Probab=7.38 E-value=60 Score=15.63 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=16.9
Q ss_pred HHHHHHCCCCEEEEEEECCCEEEE
Q ss_conf 131340146459999962662799
Q 537021.9.peg.8 4 YDYILGLHENFWLFFLKKDDFYRI 27 (38)
Q Consensus 4 ydyilglhenfwlfflkkddfyri 27 (38)
+-|--.-.+.-+||.-|+|||-++
T Consensus 17 ~IYkS~KK~~tYLYV~k~ddfs~v 40 (110)
T 2h7a_A 17 VIYRSSKRDQTYLYVEKKDDFSRV 40 (110)
T ss_dssp EEEEETTSSSCEEEESSSSCCCSS
T ss_pred EEECCCCCCCEEEEEECCCCHHHC
T ss_conf 996147888748999868881039
No 10
>>2fp7_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, substrate-based inhibitor, viral protein/protease complex; HET: NDL; 1.68A {West nile virus} (B:)
Probab=7.21 E-value=1.6e+02 Score=13.43 Aligned_cols=10 Identities=40% Similarity=0.630 Sum_probs=6.9
Q ss_pred CCCEEEEEEE
Q ss_conf 2662799999
Q 537021.9.peg.8 21 KDDFYRIMVC 30 (38)
Q Consensus 21 kddfyrimvc 30 (38)
+|-.||||.-
T Consensus 4 ~dGvYrI~~~ 13 (172)
T 2fp7_B 4 TTGVYRIMTR 13 (172)
T ss_dssp CCEEEEEEC-
T ss_pred CCCEEEEEEC
T ss_conf 8827999826
Done!