Query 537021.9.peg.851_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 03:01:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_851.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qe6_A Uncharacterized protein 11.4 54 0.0023 15.1 0.6 12 3-14 26-37 (274)
2 3giw_A Protein of unknown func 10.1 64 0.0027 14.7 0.6 12 3-14 27-38 (277)
3 2fft_A Thylakoid soluble phosp 7.6 34 0.0014 16.1 -1.7 17 3-26 15-31 (84)
4 3e90_B NS3 protease; trypsin-l 7.5 1.4E+02 0.0057 12.9 1.4 12 20-31 22-33 (198)
5 3n9b_A Probable ATP-dependent 7.4 1.4E+02 0.0059 12.9 1.6 14 12-25 136-149 (171)
6 3bn0_A 30S ribosomal protein S 6.4 1.4E+02 0.0061 12.8 1.1 14 18-31 11-24 (112)
7 1ej6_A Lambda2; icosahedral, n 6.0 1.2E+02 0.0049 13.3 0.4 15 19-33 1145-1159(1289)
8 2fom_B Polyprotein; flavivirus 5.8 1.7E+02 0.0073 12.4 1.4 13 18-30 16-28 (185)
9 3iyl_W VP1; non-enveloped viru 5.7 1.3E+02 0.0056 13.0 0.6 15 19-33 1155-1169(1299)
10 3ofo_P 30S ribosomal protein S 5.5 1.3E+02 0.0053 13.1 0.3 11 20-30 12-22 (82)
No 1
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca YX}
Probab=11.42 E-value=54 Score=15.06 Aligned_cols=12 Identities=50% Similarity=0.977 Sum_probs=9.6
Q ss_pred HHHHHHHCCCCE
Q ss_conf 313134014645
Q 537021.9.peg.8 3 LYDYILGLHENF 14 (38)
Q Consensus 3 lydyilglhenf 14 (38)
.|||.||=..||
T Consensus 26 vydy~lGG~~n~ 37 (274)
T 2qe6_A 26 VYDALLGGKDNF 37 (274)
T ss_dssp HHHHHTTCSSCC
T ss_pred EEHHHCCCCCCC
T ss_conf 004232886576
No 2
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis ma-4680} PDB: 3go4_A*
Probab=10.12 E-value=64 Score=14.68 Aligned_cols=12 Identities=42% Similarity=1.085 Sum_probs=9.5
Q ss_pred HHHHHHHCCCCE
Q ss_conf 313134014645
Q 537021.9.peg.8 3 LYDYILGLHENF 14 (38)
Q Consensus 3 lydyilglhenf 14 (38)
.|||.||=..||
T Consensus 27 vyDy~LGG~dn~ 38 (277)
T 3giw_A 27 IYDYIIGGKDYY 38 (277)
T ss_dssp HHHHHTTCSCCC
T ss_pred HHHHHHCCCCCC
T ss_conf 205440886577
No 3
>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} SCOP: g.88.1.1
Probab=7.61 E-value=34 Score=16.14 Aligned_cols=17 Identities=41% Similarity=0.899 Sum_probs=11.0
Q ss_pred HHHHHHHCCCCEEEEEEECCCEEE
Q ss_conf 313134014645999996266279
Q 537021.9.peg.8 3 LYDYILGLHENFWLFFLKKDDFYR 26 (38)
Q Consensus 3 lydyilglhenfwlfflkkddfyr 26 (38)
+.|+|||. ..|+|.||.
T Consensus 15 l~D~IlGf-------i~KeDQ~~E 31 (84)
T 2fft_A 15 FVDWLLGK-------ITKEDQFYE 31 (84)
T ss_dssp HHHHHHHH-------HSCCCCSCC
T ss_pred HHHHHHHH-------CCCCCCCEE
T ss_conf 68887642-------210010023
No 4
>3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor, catalytic histidine, induced FIT, ATP-binding, capsid protein, helicase; HET: NKK; 2.45A {West nile virus}
Probab=7.47 E-value=1.4e+02 Score=12.93 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=8.6
Q ss_pred ECCCEEEEEEEE
Q ss_conf 626627999999
Q 537021.9.peg.8 20 KKDDFYRIMVCV 31 (38)
Q Consensus 20 kkddfyrimvcv 31 (38)
.+|-.||||+--
T Consensus 22 l~dGVYRI~~~g 33 (198)
T 3e90_B 22 TTTGVYRIMTRG 33 (198)
T ss_dssp CCSEEEEEEEEE
T ss_pred CCCCEEEEEECC
T ss_conf 789559998266
No 5
>3n9b_A Probable ATP-dependent DNA ligase; phosphoesterase, metalloenzyme, NHEJ, manganese, BET; 1.92A {Pseudomonas aeruginosa} PDB: 3n9d_A
Probab=7.39 E-value=1.4e+02 Score=12.85 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=11.1
Q ss_pred CCEEEEEEECCCEE
Q ss_conf 64599999626627
Q 537021.9.peg.8 12 ENFWLFFLKKDDFY 25 (38)
Q Consensus 12 enfwlfflkkddfy 25 (38)
++-||++.++|++-
T Consensus 136 ~~~WLl~k~~d~~a 149 (171)
T 3n9b_A 136 QSQWFLVKAKDGEA 149 (171)
T ss_dssp TTEEEEEECSSTTC
T ss_pred CCCEEEEECCCCCC
T ss_conf 77477897536566
No 6
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=6.37 E-value=1.4e+02 Score=12.79 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=9.8
Q ss_pred EEECCCEEEEEEEE
Q ss_conf 99626627999999
Q 537021.9.peg.8 18 FLKKDDFYRIMVCV 31 (38)
Q Consensus 18 flkkddfyrimvcv 31 (38)
=-|+.-||||.|.-
T Consensus 11 G~k~~p~yriVv~d 24 (112)
T 3bn0_A 11 GRKHHPIYRIVVMD 24 (112)
T ss_dssp EETTEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEE
T ss_conf 88889857899843
No 7
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U
Probab=5.96 E-value=1.2e+02 Score=13.30 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=10.9
Q ss_pred EECCCEEEEEEEEEE
Q ss_conf 962662799999998
Q 537021.9.peg.8 19 LKKDDFYRIMVCVIS 33 (38)
Q Consensus 19 lkkddfyrimvcvis 33 (38)
+.-|++||.|||+.+
T Consensus 1145 i~~d~yY~l~vFv~~ 1159 (1289)
T 1ej6_A 1145 ITVNPYYRLMTFVRI 1159 (1289)
T ss_dssp EEECTTSCCCEEEEE
T ss_pred EEECCCCEEEEEEEE
T ss_conf 884462248999998
No 8
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein/protease complex; 1.50A {Dengue virus 2} SCOP: b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A
Probab=5.76 E-value=1.7e+02 Score=12.37 Aligned_cols=13 Identities=31% Similarity=0.189 Sum_probs=9.0
Q ss_pred EEECCCEEEEEEE
Q ss_conf 9962662799999
Q 537021.9.peg.8 18 FLKKDDFYRIMVC 30 (38)
Q Consensus 18 flkkddfyrimvc 30 (38)
.--+|-.||||.-
T Consensus 16 ~~l~dGvYRI~~~ 28 (185)
T 2fom_B 16 AELEDGAYRIKQK 28 (185)
T ss_dssp --CCSEEEEEEEE
T ss_pred CCCCCCEEEEEEC
T ss_conf 6367954898835
No 9
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A
Probab=5.75 E-value=1.3e+02 Score=12.98 Aligned_cols=15 Identities=27% Similarity=0.882 Sum_probs=11.7
Q ss_pred EECCCEEEEEEEEEE
Q ss_conf 962662799999998
Q 537021.9.peg.8 19 LKKDDFYRIMVCVIS 33 (38)
Q Consensus 19 lkkddfyrimvcvis 33 (38)
+.-|++||.+||+.+
T Consensus 1155 i~~d~yY~l~vfv~~ 1169 (1299)
T 3iyl_W 1155 ITCDPYYQLAVCIFK 1169 (1299)
T ss_dssp EECCTTSCEEEEECC
T ss_pred EEECCHHEEEEEEEE
T ss_conf 884451418999998
No 10
>3ofo_P 30S ribosomal protein S16; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=5.46 E-value=1.3e+02 Score=13.12 Aligned_cols=11 Identities=45% Similarity=0.917 Sum_probs=8.1
Q ss_pred ECCCEEEEEEE
Q ss_conf 62662799999
Q 537021.9.peg.8 20 KKDDFYRIMVC 30 (38)
Q Consensus 20 kkddfyrimvc 30 (38)
|+.-||||.|-
T Consensus 12 k~rP~YrIVv~ 22 (82)
T 3ofo_P 12 KKRPFYQVVVA 22 (82)
T ss_dssp TTSCCBCEEEE
T ss_pred CCCCEEEEEEE
T ss_conf 99985899996
Done!