Query 537021.9.peg.851_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed May 25 02:24:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_851.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1x63a2 g.39.1.3 (A:45-76) Fou 20.7 18 0.0013 16.4 1.3 11 16-26 13-23 (32) 2 d2fomb1 b.47.1.3 (B:18-167) NS 14.2 33 0.0024 15.0 1.4 11 21-31 2-12 (150) 3 d2uubp1 d.27.1.1 (P:1-83) Ribo 8.2 68 0.005 13.3 1.3 11 20-30 12-22 (83) 4 d2gy9p1 d.27.1.1 (P:1-78) Ribo 7.8 73 0.0053 13.1 1.3 11 20-30 12-22 (78) 5 d3bn0a1 d.27.1.1 (A:2-102) Rib 7.2 71 0.0052 13.2 1.1 14 18-31 10-23 (101) 6 d1nh2d2 b.56.1.1 (D:55-121) Sm 4.9 1.1E+02 0.0083 12.1 1.7 16 10-25 17-32 (67) 7 d1nvpd2 b.56.1.1 (D:54-99) Sma 3.8 1.4E+02 0.01 11.6 1.7 15 10-24 14-28 (46) 8 d1s16a1 d.14.1.3 (A:1217-1383) 3.3 71 0.0052 13.2 -1.1 16 21-36 93-108 (167) 9 d2gnoa1 a.80.1.1 (A:209-306) g 3.1 1E+02 0.0073 12.4 -0.5 6 10-15 52-57 (98) 10 d1kija1 d.14.1.3 (A:221-392) D 2.9 1.2E+02 0.009 11.9 -0.2 20 19-38 90-109 (172) No 1 >d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=20.69 E-value=18 Score=16.36 Aligned_cols=11 Identities=55% Similarity=0.960 Sum_probs=9.2 Q ss_pred EEEEECCCEEE Q ss_conf 99996266279 Q 537021.9.peg.8 16 LFFLKKDDFYR 26 (38) Q Consensus 16 lfflkkddfyr 26 (38) -||-|.+|||- T Consensus 13 sffpkg~d~yc 23 (32) T d1x63a2 13 SFFPKGEDFYC 23 (32) T ss_dssp CEEEETTEEEE T ss_pred CCCCCCCCEEE T ss_conf 42479982799 No 2 >d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId: 11060]} Probab=14.20 E-value=33 Score=14.97 Aligned_cols=11 Identities=36% Similarity=0.341 Sum_probs=7.7 Q ss_pred CCCEEEEEEEE Q ss_conf 26627999999 Q 537021.9.peg.8 21 KDDFYRIMVCV 31 (38) Q Consensus 21 kddfyrimvcv 31 (38) +|-+||||+-- T Consensus 2 ~dGvYRI~~~g 12 (150) T d2fomb1 2 EDGAYRIKQKG 12 (150) T ss_dssp CSEEEEEEEEE T ss_pred CCCEEEEEECC T ss_conf 98479998752 No 3 >d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]} Probab=8.18 E-value=68 Score=13.26 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=8.7 Q ss_pred ECCCEEEEEEE Q ss_conf 62662799999 Q 537021.9.peg.8 20 KKDDFYRIMVC 30 (38) Q Consensus 20 kkddfyrimvc 30 (38) |+.-||||.|. T Consensus 12 k~~P~yrIVv~ 22 (83) T d2uubp1 12 KHNPHYRIVVT 22 (83) T ss_dssp TTBCCEEEEEE T ss_pred CCCCEEEEEEE T ss_conf 89985899997 No 4 >d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]} Probab=7.80 E-value=73 Score=13.11 Aligned_cols=11 Identities=45% Similarity=0.917 Sum_probs=8.7 Q ss_pred ECCCEEEEEEE Q ss_conf 62662799999 Q 537021.9.peg.8 20 KKDDFYRIMVC 30 (38) Q Consensus 20 kkddfyrimvc 30 (38) |+.-||||.|. T Consensus 12 k~~P~YrIVv~ 22 (78) T d2gy9p1 12 KKRPFYQVVVA 22 (78) T ss_dssp TTBCCEEEEEE T ss_pred CCCCEEEEEEE T ss_conf 89984799986 No 5 >d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]} Probab=7.23 E-value=71 Score=13.17 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=9.9 Q ss_pred EEECCCEEEEEEEE Q ss_conf 99626627999999 Q 537021.9.peg.8 18 FLKKDDFYRIMVCV 31 (38) Q Consensus 18 flkkddfyrimvcv 31 (38) =-|+.-||||.|.- T Consensus 10 G~k~~p~yrIVv~d 23 (101) T d3bn0a1 10 GRKHHPIYRIVVMD 23 (101) T ss_dssp EETTEEEEEEEEEE T ss_pred CCCCCCEEEEEEEE T ss_conf 99899836899843 No 6 >d1nh2d2 b.56.1.1 (D:55-121) Small chain TOA2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=4.94 E-value=1.1e+02 Score=12.07 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=12.1 Q ss_pred CCCCEEEEEEECCCEE Q ss_conf 1464599999626627 Q 537021.9.peg.8 10 LHENFWLFFLKKDDFY 25 (38) Q Consensus 10 lhenfwlfflkkddfy 25 (38) .-+|-|-|.+|.-.|- T Consensus 17 FCDnVWTFiiknv~fk 32 (67) T d1nh2d2 17 FCDDVWTFIVKNCQVT 32 (67) T ss_dssp EETTEEEEEEEEEEEE T ss_pred CCCCEEEEEEEEEEEE T ss_conf 0353778999506997 No 7 >d1nvpd2 b.56.1.1 (D:54-99) Small chain TOA2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=3.81 E-value=1.4e+02 Score=11.58 Aligned_cols=15 Identities=33% Similarity=0.875 Sum_probs=10.3 Q ss_pred CCCCEEEEEEECCCE Q ss_conf 146459999962662 Q 537021.9.peg.8 10 LHENFWLFFLKKDDF 24 (38) Q Consensus 10 lhenfwlfflkkddf 24 (38) .-+|-|-|.+|.-.| T Consensus 14 fCDnVWTFilkdv~f 28 (46) T d1nvpd2 14 FCDNVWTFVLNDVEF 28 (46) T ss_dssp EETTEEEEEEEEEEE T ss_pred CCCCEEEEEEECEEE T ss_conf 678587899936698 No 8 >d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Probab=3.33 E-value=71 Score=13.17 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=7.1 Q ss_pred CCCEEEEEEEEEEEEE Q ss_conf 2662799999998651 Q 537021.9.peg.8 21 KDDFYRIMVCVISLKT 36 (38) Q Consensus 21 kddfyrimvcvislkt 36 (38) .||+.--|+++||.+- T Consensus 93 ~~Di~egl~aiiSvki 108 (167) T d1s16a1 93 AEDIWDRCAYVLSVKM 108 (167) T ss_dssp HHHHHTTEEEEEEEEE T ss_pred HHHHHCCCEEEEEEEC T ss_conf 8776177658987405 No 9 >d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]} Probab=3.08 E-value=1e+02 Score=12.37 Aligned_cols=6 Identities=83% Similarity=1.630 Sum_probs=0.0 Q ss_pred CCCCEE Q ss_conf 146459 Q 537021.9.peg.8 10 LHENFW 15 (38) Q Consensus 10 lhenfw 15 (38) ||||-| T Consensus 52 lhen~w 57 (98) T d2gnoa1 52 LHENTW 57 (98) T ss_dssp HHTSCC T ss_pred CCCCCC T ss_conf 102764 No 10 >d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Probab=2.95 E-value=1.2e+02 Score=11.87 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=0.0 Q ss_pred EECCCEEEEEEEEEEEEECC Q ss_conf 96266279999999865169 Q 537021.9.peg.8 19 LKKDDFYRIMVCVISLKTNN 38 (38) Q Consensus 19 lkkddfyrimvcvislktnn 38 (38) +..||...-|.++||+|..+ T Consensus 90 i~~~Di~egl~~iiSvki~~ 109 (172) T d1kija1 90 PTGDDLLEGLYAVVSVKLPN 109 (172) T ss_dssp CCTTTTTTTEEEEEEEECSS T ss_pred CCHHHHHCCCEEEEEECCCC T ss_conf 23889971310575502667 Done!