Query 537021.9.peg.852_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 02:44:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_852.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3hr0_A COG4; conserved oligom 19.5 40 0.0012 16.9 0.9 28 10-37 50-77 (80) 2 >2w02_A ACSD; SSPF, achromobac 14.5 84 0.0025 15.4 1.6 15 2-16 42-56 (70) 3 >1o98_A 2,3-bisphosphoglycerat 14.0 90 0.0027 15.3 1.6 13 2-14 72-84 (238) 4 >3igz_B Cofactor-independent p 9.9 1.5E+02 0.0043 14.3 1.6 13 2-14 72-84 (239) 5 >2q1f_A Chondroitinase; alpha 9.2 1E+02 0.0031 15.0 0.6 28 10-37 142-169 (175) 6 >2wyo_A Glutathione synthetase 8.0 1.2E+02 0.0036 14.7 0.5 11 27-37 67-77 (152) 7 >3kal_A Homoglutathione synthe 7.0 1.6E+02 0.0047 14.2 0.8 10 27-36 16-25 (99) 8 >3cqx_C BAG family molecular c 5.0 2.6E+02 0.0078 13.2 0.9 11 26-36 63-73 (88) 9 >2oux_A Magnesium transporter; 4.7 2.4E+02 0.0072 13.3 0.6 20 14-33 24-43 (58) 10 >3bua_E HSNM1B, DNA cross-LINK 4.7 2.7E+02 0.0081 13.1 0.8 19 16-35 16-34 (36) No 1 >>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens} (A:94-173) Probab=19.50 E-value=40 Score=16.88 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=23.8 Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHC Q ss_conf 6654100764455742221788877525 Q 537021.9.peg.8 10 DTLPLRNFAEYFFLLVNFDQRQIEKRLM 37 (38) Q Consensus 10 dtlplrnfaeyffllvnfdqrqiekrlm 37 (38) +.|--+||...+-++++.=-+++||++| T Consensus 50 ~~Lt~~nyd~ll~~~~~~ia~~lEk~i~ 77 (80) T 3hr0_A 50 ASLSPVIYDSLTGLMTSLVAVELEKVVL 77 (80) T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9848688999999999999999999998 No 2 >>2w02_A ACSD; SSPF, achromobactin biosynthesis, metal transport, pectobacterium chrysanthemi; HET: ATP; 2.20A {Erwinia chrysanthemi} PDB: 2w03_A* 2w04_A* 3ffe_A (A:33-102) Probab=14.50 E-value=84 Score=15.42 Aligned_cols=15 Identities=40% Similarity=0.744 Sum_probs=11.2 Q ss_pred EEEECCCCCCCCHHH Q ss_conf 788618656654100 Q 537021.9.peg.8 2 VFLFSDRRDTLPLRN 16 (38) Q Consensus 2 vflfsdrrdtlplrn 16 (38) .|..-||||++--.. T Consensus 42 ~FVlVDRRD~lGSqr 56 (70) T 2w02_A 42 LFVMVDRRDTFGSQH 56 (70) T ss_dssp EEEEESSCCSSSCCC T ss_pred EEEEEECCCCCCCEE T ss_conf 999985147757758 No 3 >>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} (A:75-312) Probab=14.02 E-value=90 Score=15.27 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=11.0 Q ss_pred EEEECCCCCCCCH Q ss_conf 7886186566541 Q 537021.9.peg.8 2 VFLFSDRRDTLPL 14 (38) Q Consensus 2 vflfsdrrdtlpl 14 (38) +-+|.|-|||.|- T Consensus 72 iH~f~DGRDt~P~ 84 (238) T 1o98_A 72 IHGFLDGRDVGPQ 84 (238) T ss_dssp EEEEECSSSSCTT T ss_pred EEEECCCCCCCCH T ss_conf 8884146667832 No 4 >>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* (B:88-326) Probab=9.91 E-value=1.5e+02 Score=14.32 Aligned_cols=13 Identities=31% Similarity=0.204 Sum_probs=11.0 Q ss_pred EEEECCCCCCCCH Q ss_conf 7886186566541 Q 537021.9.peg.8 2 VFLFSDRRDTLPL 14 (38) Q Consensus 2 vflfsdrrdtlpl 14 (38) |-.|.|-|||-|- T Consensus 72 vH~f~DGRDt~P~ 84 (239) T 3igz_B 72 VHALYDGRDVPDG 84 (239) T ss_dssp EEEEECSSSSCTT T ss_pred EEEEECCCCCCCC T ss_conf 9998246665751 No 5 >>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides thetaiotaomicron} (A:416-590) Probab=9.21 E-value=1e+02 Score=15.01 Aligned_cols=28 Identities=32% Similarity=0.435 Sum_probs=19.2 Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHC Q ss_conf 6654100764455742221788877525 Q 537021.9.peg.8 10 DTLPLRNFAEYFFLLVNFDQRQIEKRLM 37 (38) Q Consensus 10 dtlplrnfaeyffllvnfdqrqiekrlm 37 (38) ++-..++++||.--.-+-+++|++|||. T Consensus 142 ~~~~~~~~~~~~p~~~~a~~~~~~~~l~ 169 (175) T 2q1f_A 142 DSSSAEQAPEYXPKVSNAQERKIAKRLV 169 (175) T ss_dssp CC----------CCCCSHHHHHHHHHHH T ss_pred CCCCCCCCCHHCCCCCHHHHHHHHHHHH T ss_conf 5542212200102344267788988765 No 6 >>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GTT; 3.15A {Trypanosoma brucei} (A:209-360) Probab=7.98 E-value=1.2e+02 Score=14.70 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=8.7 Q ss_pred CCHHHHHHHHC Q ss_conf 21788877525 Q 537021.9.peg.8 27 FDQRQIEKRLM 37 (38) Q Consensus 27 fdqrqiekrlm 37 (38) ||||.+|..|. T Consensus 67 ~DQr~lE~~L~ 77 (152) T 2wyo_A 67 ADQYALLMRVL 77 (152) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 87899999888 No 7 >>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS; 1.90A {Glycine max} PDB: 3kak_A* 3kaj_A* (A:230-328) Probab=6.98 E-value=1.6e+02 Score=14.15 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=7.8 Q ss_pred CCHHHHHHHH Q ss_conf 2178887752 Q 537021.9.peg.8 27 FDQRQIEKRL 36 (38) Q Consensus 27 fdqrqiekrl 36 (38) ||||.+|..| T Consensus 16 ~DQr~le~~L 25 (99) T 3kal_A 16 YEQHYISALL 25 (99) T ss_dssp HHHHHHHHHH T ss_pred CCHHHHHHHH T ss_conf 0069999999 No 8 >>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A (C:) Probab=4.98 E-value=2.6e+02 Score=13.18 Aligned_cols=11 Identities=45% Similarity=0.646 Sum_probs=8.5 Q ss_pred CCCHHHHHHHH Q ss_conf 22178887752 Q 537021.9.peg.8 26 NFDQRQIEKRL 36 (38) Q Consensus 26 nfdqrqiekrl 36 (38) -=||..|.||| T Consensus 63 ldDQKkIKkRL 73 (88) T 3cqx_C 63 LEDQKKIKRRL 73 (88) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 96489999999 No 9 >>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} (A:1-58) Probab=4.75 E-value=2.4e+02 Score=13.34 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHCCCCHHHHH Q ss_conf 10076445574222178887 Q 537021.9.peg.8 14 LRNFAEYFFLLVNFDQRQIE 33 (38) Q Consensus 14 lrnfaeyffllvnfdqrqie 33 (38) ...|-|.|.-|-++||-++= T Consensus 24 i~~FReeFL~LH~YDQa~~f 43 (58) T 2oux_A 24 XNEFRELFLALHIYEQGQFY 43 (58) T ss_dssp HHHHHHHHTTSCHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHH T ss_conf 99999999839999999999 No 10 >>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens} (E:) Probab=4.69 E-value=2.7e+02 Score=13.11 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=9.0 Q ss_pred HHHHHHHHHCCCCHHHHHHH Q ss_conf 07644557422217888775 Q 537021.9.peg.8 16 NFAEYFFLLVNFDQRQIEKR 35 (38) Q Consensus 16 nfaeyffllvnfdqrqiekr 35 (38) ||-.--|---|||| |+||- T Consensus 16 ~f~qa~~ssr~fdq-qveky 34 (36) T 3bua_E 16 NFFQAGYSSRRFDQ-QVEKY 34 (36) T ss_pred HHHHHCCCCCCHHH-HHHHH T ss_conf 99884323146689-99885 Done!