RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.852_1
         (38 letters)



>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein;
           Provisional.
          Length = 558

 Score = 24.3 bits (53), Expect = 6.5
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 3/23 (13%)

Query: 9   RDTLPLRN-FAEYFFLLVN--FD 28
            DTLPLR+ FA  FF+ V   FD
Sbjct: 272 HDTLPLRDAFAVLFFVSVGMLFD 294


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.341    0.152    0.441 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 649,611
Number of extensions: 21550
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 38
Length of database: 5,994,473
Length adjustment: 12
Effective length of query: 26
Effective length of database: 5,735,177
Effective search space: 149114602
Effective search space used: 149114602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 50 (23.1 bits)