Query 537021.9.peg.873_1
Match_columns 41
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 00:44:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_873.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2dew_X Protein-arginine deimi 42.5 5.9 0.00017 20.7 -0.0 17 11-27 1-17 (68)
2 >2nyt_A Probable C->U-editing 16.4 77 0.0023 15.1 1.8 17 18-34 76-92 (190)
3 >2r7k_A 5-formaminoimidazole-4 14.6 34 0.001 16.9 -0.4 26 6-31 76-110 (177)
4 >3ir2_A DNA DC->DU-editing enz 10.6 1.5E+02 0.0044 13.7 2.1 18 17-34 92-109 (207)
5 >2r85_A PURP protein PF1517; A 8.7 92 0.0027 14.7 0.2 26 6-31 50-84 (150)
6 >1fbv_A Signal transduction pr 8.6 73 0.0022 15.2 -0.4 13 14-26 26-38 (130)
7 >2bsg_A Fibritin; viral protei 7.9 27 0.0008 17.4 -2.8 12 11-22 2-13 (66)
8 >3bux_B E3 ubiquitin-protein l 7.8 83 0.0025 15.0 -0.4 13 14-26 50-62 (154)
9 >1usp_A Organic hydroperoxide 6.8 1.8E+02 0.0053 13.3 0.9 17 9-25 18-34 (38)
10 >1n2f_A Organic hydroperoxide 6.3 1.7E+02 0.0051 13.4 0.6 17 9-25 21-37 (42)
No 1
>>2dew_X Protein-arginine deiminase type IV; histone modification enzyme, hydrolase; 2.10A {Homo sapiens} (X:410-477)
Probab=42.54 E-value=5.9 Score=20.66 Aligned_cols=17 Identities=47% Similarity=0.573 Sum_probs=12.4
Q ss_pred CCCCCEEEECCCCCEEE
Q ss_conf 21121689628998079
Q 537021.9.peg.8 11 STIDGKLKLNTSPPYTV 27 (41)
Q Consensus 11 stidgklklntsppytv 27 (41)
+++|.-=.|.+||||++
T Consensus 1 ~~ldS~GNLevsPP~~~ 17 (68)
T 2dew_X 1 SGLDSFGNLEVSPPVTV 17 (68)
T ss_dssp CGGGSGGGEEECCSEEE
T ss_pred CCCCCCCCCCCCCCEEC
T ss_conf 10025676522598503
No 2
>>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} (A:)
Probab=16.44 E-value=77 Score=15.14 Aligned_cols=17 Identities=18% Similarity=0.409 Sum_probs=12.6
Q ss_pred EECCCCCEEEEEEEEEC
Q ss_conf 96289980799999951
Q 537021.9.peg.8 18 KLNTSPPYTVTCFLTFE 34 (41)
Q Consensus 18 klntsppytvtcfltfe 34 (41)
+|..+--|.||||++.-
T Consensus 76 ~l~p~~~y~ITwy~SWS 92 (190)
T 2nyt_A 76 AFDPALRYNVTWYVSSS 92 (190)
T ss_dssp CCCTTCEEEEEEEEEEC
T ss_pred HCCCCCEEEEEEEEECC
T ss_conf 22977458999996349
No 3
>>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} (A:92-143,A:202-326)
Probab=14.62 E-value=34 Score=16.89 Aligned_cols=26 Identities=38% Similarity=0.781 Sum_probs=19.4
Q ss_pred EEEE-ECCCCC--------EEEECCCCCEEEEEEE
Q ss_conf 7642-021121--------6896289980799999
Q 537021.9.peg.8 6 IEMR-QSTIDG--------KLKLNTSPPYTVTCFL 31 (41)
Q Consensus 6 iemr-qstidg--------klklntsppytvtcfl 31 (41)
|+.| ||.+|| .|+++-.|.|+|+--.
T Consensus 76 iD~R~EsniDg~~RlPA~~Qle~~~~p~yvvvGn~ 110 (177)
T 2r7k_A 76 MDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNI 110 (177)
T ss_dssp EEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEE
T ss_pred EECCCCCEEEEEEECCHHHHHHCCCCCCCEEEEEC
T ss_conf 96389978988887688887524788884599948
No 4
>>3ir2_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrolase, metal-binding, X-RAY, zinc, alternative splicing; HET: DNA; 2.25A {Homo sapiens} PDB: 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* (A:)
Probab=10.55 E-value=1.5e+02 Score=13.69 Aligned_cols=18 Identities=39% Similarity=0.796 Sum_probs=14.2
Q ss_pred EEECCCCCEEEEEEEEEC
Q ss_conf 896289980799999951
Q 537021.9.peg.8 17 LKLNTSPPYTVTCFLTFE 34 (41)
Q Consensus 17 lklntsppytvtcfltfe 34 (41)
.+|+.+--|.||||++.-
T Consensus 92 ~~l~~~~~y~ITwy~SWS 109 (207)
T 3ir2_A 92 WKLDLDQDYRVTCFTSWS 109 (207)
T ss_dssp GCCCTTSCEEEEEEEEEC
T ss_pred CCCCCCCCEEEEEEEECC
T ss_conf 157967537898777268
No 5
>>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} (A:93-119,A:177-299)
Probab=8.67 E-value=92 Score=14.74 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=18.2
Q ss_pred EEEE-ECCCCCE--------EEECCCCCEEEEEEE
Q ss_conf 7642-0211216--------896289980799999
Q 537021.9.peg.8 6 IEMR-QSTIDGK--------LKLNTSPPYTVTCFL 31 (41)
Q Consensus 6 iemr-qstidgk--------lklntsppytvtcfl 31 (41)
|+.| ||.+||- |+++-.|.|+|+--.
T Consensus 50 iDrR~EsniDG~~RlPA~~QLe~~i~p~yvvvGn~ 84 (150)
T 2r85_A 50 IDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNI 84 (150)
T ss_dssp EEEEEEEEGGGGGGSCHHHHTTSCCCCCEEEEEEE
T ss_pred ECCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEC
T ss_conf 71799549844787675023157864167433406
No 6
>>1fbv_A Signal transduction protein CBL; CBL, ZAP-70, phosphorylation, tyrosine kinase, ubiquitination, protein degradation,, ligase; HET: PTR; 2.90A {Homo sapiens} (A:1-130)
Probab=8.58 E-value=73 Score=15.25 Aligned_cols=13 Identities=54% Similarity=0.956 Sum_probs=9.8
Q ss_pred CCEEEECCCCCEE
Q ss_conf 2168962899807
Q 537021.9.peg.8 14 DGKLKLNTSPPYT 26 (41)
Q Consensus 14 dgklklntsppyt 26 (41)
|-+|.|..||||-
T Consensus 26 ~Prl~LKnSPP~i 38 (130)
T 1fbv_A 26 NPKLALKNSPPYI 38 (130)
T ss_dssp CGGGCCTTCTTCH
T ss_pred CCCCCCCCCCCCH
T ss_conf 9875668899617
No 7
>>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4} (A:306-371)
Probab=7.88 E-value=27 Score=17.37 Aligned_cols=12 Identities=50% Similarity=0.725 Sum_probs=8.1
Q ss_pred CCCCCEEEECCC
Q ss_conf 211216896289
Q 537021.9.peg.8 11 STIDGKLKLNTS 22 (41)
Q Consensus 11 stidgklklnts 22 (41)
|+|.||.|+||.
T Consensus 2 ssikgkik~nt~ 13 (66)
T 2bsg_A 2 SSIKGQIKDNTT 13 (66)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999987
No 8
>>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} (B:1-154)
Probab=7.81 E-value=83 Score=14.95 Aligned_cols=13 Identities=54% Similarity=0.956 Sum_probs=9.3
Q ss_pred CCEEEECCCCCEE
Q ss_conf 2168962899807
Q 537021.9.peg.8 14 DGKLKLNTSPPYT 26 (41)
Q Consensus 14 dgklklntsppyt 26 (41)
|-+|.|..||||-
T Consensus 50 ~PrL~LKNSPP~i 62 (154)
T 3bux_B 50 NPKLALKNSPPYI 62 (154)
T ss_dssp CGGGCCCSCSSCH
T ss_pred CCCCCCCCCCCCH
T ss_conf 9875668899617
No 9
>>1usp_A Organic hydroperoxide resistance protein; oxidoreductase, 2-Cys peroxidase; 1.9A {Deinococcus radiodurans} (A:1-38)
Probab=6.77 E-value=1.8e+02 Score=13.31 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=13.1
Q ss_pred EECCCCCEEEECCCCCE
Q ss_conf 20211216896289980
Q 537021.9.peg.8 9 RQSTIDGKLKLNTSPPY 25 (41)
Q Consensus 9 rqstidgklklntsppy 25 (41)
+-.+-||+|.++-++|-
T Consensus 18 ~~~S~Dg~Ld~~L~~Pk 34 (38)
T 1usp_A 18 TTRSSDDRLNLDLSVPA 34 (38)
T ss_dssp EEEETTSSCEEEBCCCG
T ss_pred EEEECCCCEEEEECCCC
T ss_conf 89977996245513441
No 10
>>1n2f_A Organic hydroperoxide resistance protein; peroxide reductase, oxidoreductase; 2.01A {Pseudomonas aeruginosa PAO1} (A:1-42)
Probab=6.27 E-value=1.7e+02 Score=13.39 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=13.1
Q ss_pred EECCCCCEEEECCCCCE
Q ss_conf 20211216896289980
Q 537021.9.peg.8 9 RQSTIDGKLKLNTSPPY 25 (41)
Q Consensus 9 rqstidgklklntsppy 25 (41)
+-.+-||.|.++-++|-
T Consensus 21 ~v~s~Dg~Ld~~L~~Pk 37 (42)
T 1n2f_A 21 RAVSSDGVLDVKLSTPR 37 (42)
T ss_dssp EEEETTSSCEEEECCCG
T ss_pred EEEECCCCEEEEECCCH
T ss_conf 79975896687735872
Done!