RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.873_1
         (41 letters)



>gnl|CDD|116940 pfam08359, TetR_C_4, YsiA-like protein, C-terminal region.  The
          members of this family are thought to be TetR-type
          transcriptional regulators that bear particular
          similarity to YsiA, a hypothetical protein expressed by
          B. subtilis.
          Length = 133

 Score = 24.3 bits (53), Expect = 7.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 2  VVRAIEMRQSTIDGKLKLN 20
          +V  +E+RQS ++ + K+N
Sbjct: 45 IVTQLELRQSNLELRQKIN 63


>gnl|CDD|150360 pfam09671, Spore_GerQ, Spore coat protein (Spore_GerQ).  Members
          of this protein family are the spore coat protein GerQ
          of endospore-forming Firmicutes (low GC Gram-positive
          bacteria). This protein is cross-linked by a spore
          coat-associated transglutaminase.
          Length = 81

 Score = 24.0 bits (52), Expect = 9.1
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 6  IEMRQSTIDGKLKLNTSPPYTVTCFLTFENATDYN 40
          + + QS I+  L+LN       T ++TFEN +++ 
Sbjct: 3  LPLEQSYIENILRLNRGK--QATVYMTFENNSEWG 35


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 605,850
Number of extensions: 18466
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 3
Length of query: 41
Length of database: 5,994,473
Length adjustment: 15
Effective length of query: 26
Effective length of database: 5,670,353
Effective search space: 147429178
Effective search space used: 147429178
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)