BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.873_1
         (41 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.873_1 
          Length = 41

 Score = 88.6 bits (218), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1  LVVRAIEMRQSTIDGKLKLNTSPPYTVTCFLTFENATDYNH 41
          LVVRAIEMRQSTIDGKLKLNTSPPYTVTCFLTFENATDYNH
Sbjct: 1  LVVRAIEMRQSTIDGKLKLNTSPPYTVTCFLTFENATDYNH 41


>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 792

 Score = 21.6 bits (44), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 13  IDGKLKLNTSPPYTVTCFLTFENATDYNH 41
           I G+L      P T T  L+FEN   ++H
Sbjct: 95  IIGQLHQRIDIPQTDTDLLSFENWLKFHH 123


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.133    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,573
Number of Sequences: 1233
Number of extensions: 445
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 41
length of database: 328,796
effective HSP length: 15
effective length of query: 26
effective length of database: 310,301
effective search space:  8067826
effective search space used:  8067826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.9 bits)
S2: 31 (16.5 bits)