Query 537021.9.peg.874_1 Match_columns 47 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 02:06:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_874.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2kfd_A PRE-mRNA-processing pr 37.6 12 0.00037 18.8 1.0 14 9-22 13-26 (69) 2 >2ywe_A GTP-binding protein LE 20.9 12 0.00037 18.8 -1.4 32 1-39 5-36 (117) 3 >3ig3_A Plxna3 protein; plexin 19.6 55 0.0016 15.5 1.6 25 2-26 95-119 (122) 4 >2qbu_A Precorrin-2 methyltran 16.0 9.4 0.00028 19.4 -3.0 11 7-17 84-94 (101) 5 >2ox7_A Hypothetical protein; 14.9 22 0.00066 17.5 -1.3 10 34-43 29-38 (40) 6 >3hm6_X Plexin-B1; structural 13.4 98 0.0029 14.2 1.7 24 2-25 171-194 (198) 7 >1pi1_A MOB1A; mitotic EXIT ne 10.9 1.2E+02 0.0037 13.7 1.5 12 14-25 121-132 (185) 8 >3cb4_D GTP-binding protein LE 9.1 20 0.00059 17.8 -3.1 31 2-39 6-36 (121) 9 >2hjn_A MPS1 binder 1, mainten 9.1 1.6E+02 0.0047 13.2 1.5 11 15-25 175-185 (236) 10 >1xi4_A Clathrin heavy chain; 9.0 1.4E+02 0.0041 13.5 1.2 18 12-29 3-20 (68) No 1 >>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} (A:) Probab=37.65 E-value=12 Score=18.82 Aligned_cols=14 Identities=43% Similarity=0.733 Sum_probs=11.8 Q ss_pred HCCHHHHHHHHHHH Q ss_conf 38069999999999 Q 537021.9.peg.8 9 EIPYFSLMLYRVYH 22 (47) Q Consensus 9 eipyfslmlyrvyh 22 (47) .--||.|||-|||. T Consensus 13 kK~yF~LlL~Rvy~ 26 (69) T 2kfd_A 13 KKHYFWLLLQRTYT 26 (69) T ss_dssp HHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHC T ss_conf 99999999999982 No 2 >>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural genomics, NPPSFA; 2.05A {Aquifex aeolicus VF5} PDB: 2ywf_A* 2ywg_A* 2ywh_A* (A:484-600) Probab=20.95 E-value=12 Score=18.81 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=25.5 Q ss_pred CCHHCCHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 910007443806999999999997201178999986210 Q 537021.9.peg.8 1 LDKLLNAEEIPYFSLMLYRVYHHIHRDNAHILQKEIVSY 39 (47) Q Consensus 1 ldkllnaeeipyfslmlyrvyhhihrdnahilqkeivsy 39 (47) +|-++|.+.+.-+|.+ +||++|.-.-+++|.- T Consensus 5 i~iliN~~~VDaLs~i-------vhr~~a~~~gr~~v~k 36 (117) T 2ywe_A 5 LTVLINKKPVDALSFI-------VHADRAQKFARRVAEK 36 (117) T ss_dssp EEEEESSSBCGGGCEE-------EEGGGHHHHHHHHHHH T ss_pred EEEEECCCCCCEEEEE-------EEHHHHHHHHHHHHHH T ss_conf 8899679942416777-------5586789999999997 No 3 >>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembrane, membrane protein, signaling protein; 1.99A {Mus musculus} (A:435-556) Probab=19.65 E-value=55 Score=15.52 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.1 Q ss_pred CHHCCHHHCCHHHHHHHHHHHHHHC Q ss_conf 1000744380699999999999720 Q 537021.9.peg.8 2 DKLLNAEEIPYFSLMLYRVYHHIHR 26 (47) Q Consensus 2 dkllnaeeipyfslmlyrvyhhihr 26 (47) .|||-|.|||-+--|.-+-|..|.. T Consensus 95 nkLLyakdip~yk~~V~~yY~~I~~ 119 (122) T 3ig3_A 95 NKLLYAKDIPNYKSWVERYYRDIAK 119 (122) T ss_dssp HHHHTTTTHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 0046253228899999999999973 No 4 >>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacterthermautotrophicus str} (A:132-232) Probab=15.95 E-value=9.4 Score=19.45 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=6.0 Q ss_pred HHHCCHHHHHH Q ss_conf 44380699999 Q 537021.9.peg.8 7 AEEIPYFSLML 17 (47) Q Consensus 7 aeeipyfslml 17 (47) -+++||||+|+ T Consensus 84 l~~i~y~S~~i 94 (101) T 2qbu_A 84 ASGGGYLATTL 94 (101) T ss_dssp CSCCCSSEEEE T ss_pred HHHCCCCEEEE T ss_conf 46567757999 No 5 >>2ox7_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK structural genomics research consortium; 1.78A {Enterococcus faecalis V583} (A:21-60) Probab=14.95 E-value=22 Score=17.53 Aligned_cols=10 Identities=60% Similarity=0.707 Sum_probs=7.4 Q ss_pred HHHHHHHHEE Q ss_conf 9862100303 Q 537021.9.peg.8 34 KEIVSYDRTL 43 (47) Q Consensus 34 keivsydrtl 43 (47) -||+|||.|. T Consensus 29 iei~sydttf 38 (40) T 2ox7_A 29 IEIGSYDTTF 38 (40) T ss_dssp EEECSEEEGG T ss_pred CCCCCCCCCC T ss_conf 1353001101 No 6 >>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, coiled coil; 2.40A {Homo sapiens} (X:212-248,X:410-570) Probab=13.44 E-value=98 Score=14.24 Aligned_cols=24 Identities=42% Similarity=0.685 Sum_probs=20.9 Q ss_pred CHHCCHHHCCHHHHHHHHHHHHHH Q ss_conf 100074438069999999999972 Q 537021.9.peg.8 2 DKLLNAEEIPYFSLMLYRVYHHIH 25 (47) Q Consensus 2 dkllnaeeipyfslmlyrvyhhih 25 (47) +|||-|.|||-+--|.-+-|..|. T Consensus 171 nkLLyakdip~yk~~V~~yY~~I~ 194 (198) T 3hm6_X 171 NKLLYARDIPRYKRMVERYYADIR 194 (198) T ss_dssp HHHHTTTTHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 003635332889999999999997 No 7 >>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} (A:) Probab=10.85 E-value=1.2e+02 Score=13.70 Aligned_cols=12 Identities=50% Similarity=0.725 Sum_probs=8.8 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999972 Q 537021.9.peg.8 14 SLMLYRVYHHIH 25 (47) Q Consensus 14 slmlyrvyhhih 25 (47) --.|||||-||- T Consensus 121 ~rrLfRvyaHiY 132 (185) T 1pi1_A 121 LKRLFRVYAHIY 132 (185) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999889 No 8 >>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, periplasm, translation; 2.80A {Escherichia coli K12} PDB: 3deg_C* (D:479-599) Probab=9.12 E-value=20 Score=17.75 Aligned_cols=31 Identities=35% Similarity=0.575 Sum_probs=22.6 Q ss_pred CHHCCHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 10007443806999999999997201178999986210 Q 537021.9.peg.8 2 DKLLNAEEIPYFSLMLYRVYHHIHRDNAHILQKEIVSY 39 (47) Q Consensus 2 dkllnaeeipyfslmlyrvyhhihrdnahilqkeivsy 39 (47) |-++|.+.+--||.+ +||+.|.-.-+++|.- T Consensus 6 ~IliNg~~VDALS~I-------vHr~~A~~~gr~~v~k 36 (121) T 3cb4_D 6 DVLINGERVDALALI-------THRDNSQNRGRELVEK 36 (121) T ss_dssp EEEETTEEEEEEEEE-------EEGGGHHHHHHHHHHH T ss_pred CEEECCCCCCEEEHH-------HHHHHHHHHHHHHHHH T ss_conf 357648661357689-------7997799999999863 No 9 >>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae} (A:) Probab=9.12 E-value=1.6e+02 Score=13.18 Aligned_cols=11 Identities=55% Similarity=0.851 Sum_probs=8.5 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999972 Q 537021.9.peg.8 15 LMLYRVYHHIH 25 (47) Q Consensus 15 lmlyrvyhhih 25 (47) -.|||||-||- T Consensus 175 rrLfRvyaHiY 185 (236) T 2hjn_A 175 RRLFRVYAHIY 185 (236) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 10 >>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:1563-1630) Probab=8.96 E-value=1.4e+02 Score=13.45 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=14.2 Q ss_pred HHHHHHHHHHHHHHCCHH Q ss_conf 699999999999720117 Q 537021.9.peg.8 12 YFSLMLYRVYHHIHRDNA 29 (47) Q Consensus 12 yfslmlyrvyhhihrdna 29 (47) -|.-+||.-|+.|.-|-. T Consensus 3 cF~A~Ly~CYdllrpDvV 20 (68) T 1xi4_A 3 CFGACLFTCYDLLRPDVV 20 (68) T ss_pred HHHHHHHHHHHHCCHHHH T ss_conf 889899877641687999 Done!