Query         537021.9.peg.874_1
Match_columns 47
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 02:06:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_874.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2kfd_A PRE-mRNA-processing pr  37.6      12 0.00037   18.8   1.0   14    9-22     13-26  (69)
  2 >2ywe_A GTP-binding protein LE  20.9      12 0.00037   18.8  -1.4   32    1-39      5-36  (117)
  3 >3ig3_A Plxna3 protein; plexin  19.6      55  0.0016   15.5   1.6   25    2-26     95-119 (122)
  4 >2qbu_A Precorrin-2 methyltran  16.0     9.4 0.00028   19.4  -3.0   11    7-17     84-94  (101)
  5 >2ox7_A Hypothetical protein;   14.9      22 0.00066   17.5  -1.3   10   34-43     29-38  (40)
  6 >3hm6_X Plexin-B1; structural   13.4      98  0.0029   14.2   1.7   24    2-25    171-194 (198)
  7 >1pi1_A MOB1A; mitotic EXIT ne  10.9 1.2E+02  0.0037   13.7   1.5   12   14-25    121-132 (185)
  8 >3cb4_D GTP-binding protein LE   9.1      20 0.00059   17.8  -3.1   31    2-39      6-36  (121)
  9 >2hjn_A MPS1 binder 1, mainten   9.1 1.6E+02  0.0047   13.2   1.5   11   15-25    175-185 (236)
 10 >1xi4_A Clathrin heavy chain;    9.0 1.4E+02  0.0041   13.5   1.2   18   12-29      3-20  (68)

No 1  
>>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} (A:)
Probab=37.65  E-value=12  Score=18.82  Aligned_cols=14  Identities=43%  Similarity=0.733  Sum_probs=11.8

Q ss_pred             HCCHHHHHHHHHHH
Q ss_conf             38069999999999
Q 537021.9.peg.8    9 EIPYFSLMLYRVYH   22 (47)
Q Consensus         9 eipyfslmlyrvyh   22 (47)
                      .--||.|||-|||.
T Consensus        13 kK~yF~LlL~Rvy~   26 (69)
T 2kfd_A           13 KKHYFWLLLQRTYT   26 (69)
T ss_dssp             HHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99999999999982


No 2  
>>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural genomics, NPPSFA; 2.05A {Aquifex aeolicus VF5} PDB: 2ywf_A* 2ywg_A* 2ywh_A* (A:484-600)
Probab=20.95  E-value=12  Score=18.81  Aligned_cols=32  Identities=22%  Similarity=0.452  Sum_probs=25.5

Q ss_pred             CCHHCCHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             910007443806999999999997201178999986210
Q 537021.9.peg.8    1 LDKLLNAEEIPYFSLMLYRVYHHIHRDNAHILQKEIVSY   39 (47)
Q Consensus         1 ldkllnaeeipyfslmlyrvyhhihrdnahilqkeivsy   39 (47)
                      +|-++|.+.+.-+|.+       +||++|.-.-+++|.-
T Consensus         5 i~iliN~~~VDaLs~i-------vhr~~a~~~gr~~v~k   36 (117)
T 2ywe_A            5 LTVLINKKPVDALSFI-------VHADRAQKFARRVAEK   36 (117)
T ss_dssp             EEEEESSSBCGGGCEE-------EEGGGHHHHHHHHHHH
T ss_pred             EEEEECCCCCCEEEEE-------EEHHHHHHHHHHHHHH
T ss_conf             8899679942416777-------5586789999999997


No 3  
>>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembrane, membrane protein, signaling protein; 1.99A {Mus musculus} (A:435-556)
Probab=19.65  E-value=55  Score=15.52  Aligned_cols=25  Identities=36%  Similarity=0.640  Sum_probs=22.1

Q ss_pred             CHHCCHHHCCHHHHHHHHHHHHHHC
Q ss_conf             1000744380699999999999720
Q 537021.9.peg.8    2 DKLLNAEEIPYFSLMLYRVYHHIHR   26 (47)
Q Consensus         2 dkllnaeeipyfslmlyrvyhhihr   26 (47)
                      .|||-|.|||-+--|.-+-|..|..
T Consensus        95 nkLLyakdip~yk~~V~~yY~~I~~  119 (122)
T 3ig3_A           95 NKLLYAKDIPNYKSWVERYYRDIAK  119 (122)
T ss_dssp             HHHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             0046253228899999999999973


No 4  
>>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacterthermautotrophicus str} (A:132-232)
Probab=15.95  E-value=9.4  Score=19.45  Aligned_cols=11  Identities=27%  Similarity=0.265  Sum_probs=6.0

Q ss_pred             HHHCCHHHHHH
Q ss_conf             44380699999
Q 537021.9.peg.8    7 AEEIPYFSLML   17 (47)
Q Consensus         7 aeeipyfslml   17 (47)
                      -+++||||+|+
T Consensus        84 l~~i~y~S~~i   94 (101)
T 2qbu_A           84 ASGGGYLATTL   94 (101)
T ss_dssp             CSCCCSSEEEE
T ss_pred             HHHCCCCEEEE
T ss_conf             46567757999


No 5  
>>2ox7_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK structural genomics research consortium; 1.78A {Enterococcus faecalis V583} (A:21-60)
Probab=14.95  E-value=22  Score=17.53  Aligned_cols=10  Identities=60%  Similarity=0.707  Sum_probs=7.4

Q ss_pred             HHHHHHHHEE
Q ss_conf             9862100303
Q 537021.9.peg.8   34 KEIVSYDRTL   43 (47)
Q Consensus        34 keivsydrtl   43 (47)
                      -||+|||.|.
T Consensus        29 iei~sydttf   38 (40)
T 2ox7_A           29 IEIGSYDTTF   38 (40)
T ss_dssp             EEECSEEEGG
T ss_pred             CCCCCCCCCC
T ss_conf             1353001101


No 6  
>>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, coiled coil; 2.40A {Homo sapiens} (X:212-248,X:410-570)
Probab=13.44  E-value=98  Score=14.24  Aligned_cols=24  Identities=42%  Similarity=0.685  Sum_probs=20.9

Q ss_pred             CHHCCHHHCCHHHHHHHHHHHHHH
Q ss_conf             100074438069999999999972
Q 537021.9.peg.8    2 DKLLNAEEIPYFSLMLYRVYHHIH   25 (47)
Q Consensus         2 dkllnaeeipyfslmlyrvyhhih   25 (47)
                      +|||-|.|||-+--|.-+-|..|.
T Consensus       171 nkLLyakdip~yk~~V~~yY~~I~  194 (198)
T 3hm6_X          171 NKLLYARDIPRYKRMVERYYADIR  194 (198)
T ss_dssp             HHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             003635332889999999999997


No 7  
>>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} (A:)
Probab=10.85  E-value=1.2e+02  Score=13.70  Aligned_cols=12  Identities=50%  Similarity=0.725  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999972
Q 537021.9.peg.8   14 SLMLYRVYHHIH   25 (47)
Q Consensus        14 slmlyrvyhhih   25 (47)
                      --.|||||-||-
T Consensus       121 ~rrLfRvyaHiY  132 (185)
T 1pi1_A          121 LKRLFRVYAHIY  132 (185)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999889


No 8  
>>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, periplasm, translation; 2.80A {Escherichia coli K12} PDB: 3deg_C* (D:479-599)
Probab=9.12  E-value=20  Score=17.75  Aligned_cols=31  Identities=35%  Similarity=0.575  Sum_probs=22.6

Q ss_pred             CHHCCHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             10007443806999999999997201178999986210
Q 537021.9.peg.8    2 DKLLNAEEIPYFSLMLYRVYHHIHRDNAHILQKEIVSY   39 (47)
Q Consensus         2 dkllnaeeipyfslmlyrvyhhihrdnahilqkeivsy   39 (47)
                      |-++|.+.+--||.+       +||+.|.-.-+++|.-
T Consensus         6 ~IliNg~~VDALS~I-------vHr~~A~~~gr~~v~k   36 (121)
T 3cb4_D            6 DVLINGERVDALALI-------THRDNSQNRGRELVEK   36 (121)
T ss_dssp             EEEETTEEEEEEEEE-------EEGGGHHHHHHHHHHH
T ss_pred             CEEECCCCCCEEEHH-------HHHHHHHHHHHHHHHH
T ss_conf             357648661357689-------7997799999999863


No 9  
>>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=9.12  E-value=1.6e+02  Score=13.18  Aligned_cols=11  Identities=55%  Similarity=0.851  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999972
Q 537021.9.peg.8   15 LMLYRVYHHIH   25 (47)
Q Consensus        15 lmlyrvyhhih   25 (47)
                      -.|||||-||-
T Consensus       175 rrLfRvyaHiY  185 (236)
T 2hjn_A          175 RRLFRVYAHIY  185 (236)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 10 
>>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:1563-1630)
Probab=8.96  E-value=1.4e+02  Score=13.45  Aligned_cols=18  Identities=22%  Similarity=0.466  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHCCHH
Q ss_conf             699999999999720117
Q 537021.9.peg.8   12 YFSLMLYRVYHHIHRDNA   29 (47)
Q Consensus        12 yfslmlyrvyhhihrdna   29 (47)
                      -|.-+||.-|+.|.-|-.
T Consensus         3 cF~A~Ly~CYdllrpDvV   20 (68)
T 1xi4_A            3 CFGACLFTCYDLLRPDVV   20 (68)
T ss_pred             HHHHHHHHHHHHCCHHHH
T ss_conf             889899877641687999


Done!