RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.874_1
         (47 letters)



>gnl|CDD|118772 pfam10248, Mlf1IP, Myelodysplasia-myeloid leukemia factor
           1-interacting protein.  This entry is the conserved
           central region of a group of proteins that are putative
           transcriptional repressors. The structure contains a
           putative 14-3-3 binding motif involved in the
           subcellular localisation of various regulatory
           molecules, and it may be that interaction with the
           transcription factor DREF could be regulated through
           this motif. DREF regulates proliferation-related genes
           in Drosophila. Mlf1IP is expressed in both the nuclei
           and the cytoplasm and thus may have multi-functions.
          Length = 177

 Score = 26.0 bits (57), Expect = 2.2
 Identities = 7/14 (50%), Positives = 10/14 (71%), Gaps = 1/14 (7%)

Query: 22  HHIHRDNAHILQKE 35
           HHI  D AHI+++ 
Sbjct: 132 HHIG-DRAHIIERS 144


>gnl|CDD|162376 TIGR01467, cobI_cbiL, precorrin-2 C20-methyltransferase.  This
           model represents precorrin-2 C20-methyltransferase, one
           of several closely related
           S-adenosylmethionine-dependent methyltransferases
           involved in cobalamin (vitamin B12) biosynthesis.
          Length = 230

 Score = 24.2 bits (53), Expect = 6.9
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 4   LLNAEEIPYFSLMLYR 19
               + +PYFS +L R
Sbjct: 214 EAIDDALPYFSTILVR 229


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.329    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0729    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 755,131
Number of extensions: 28924
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 4
Length of query: 47
Length of database: 5,994,473
Length adjustment: 20
Effective length of query: 27
Effective length of database: 5,562,313
Effective search space: 150182451
Effective search space used: 150182451
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.0 bits)