RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.874_1 (47 letters) >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, periplasm, translation; 2.80A {Escherichia coli K12} PDB: 3deg_C* (D:479-599) Length = 121 Score = 23.9 bits (52), Expect = 7.7 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 7/38 (18%) Query: 1 LDKLLNAEEIPYFSLMLYRVYHHIHRDNAHILQKEIVS 38 +D L+N E + +L+ HRDN+ +E+V Sbjct: 5 VDVLINGERVDALALI-------THRDNSQNRGRELVE 35 >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural genomics, NPPSFA; 2.05A {Aquifex aeolicus VF5} PDB: 2ywf_A* 2ywg_A* 2ywh_A* (A:484-600) Length = 117 Score = 23.9 bits (52), Expect = 8.2 Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 7/38 (18%) Query: 1 LDKLLNAEEIPYFSLMLYRVYHHIHRDNAHILQKEIVS 38 L L+N + + S + +H D A + + Sbjct: 5 LTVLINKKPVDALSFI-------VHADRAQKFARRVAE 35 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.329 0.142 0.428 Gapped Lambda K H 0.267 0.0671 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 378,669 Number of extensions: 10390 Number of successful extensions: 33 Number of sequences better than 10.0: 1 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 4 Length of query: 47 Length of database: 4,956,049 Length adjustment: 18 Effective length of query: 29 Effective length of database: 4,347,559 Effective search space: 126079211 Effective search space used: 126079211 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 50 (23.2 bits)