RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.874_1
         (47 letters)



>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
          nucleotide-binding, periplasm, translation; 2.80A
          {Escherichia coli K12} PDB: 3deg_C* (D:479-599)
          Length = 121

 Score = 23.9 bits (52), Expect = 7.7
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 7/38 (18%)

Query: 1  LDKLLNAEEIPYFSLMLYRVYHHIHRDNAHILQKEIVS 38
          +D L+N E +   +L+        HRDN+    +E+V 
Sbjct: 5  VDVLINGERVDALALI-------THRDNSQNRGRELVE 35


>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel,
          ferredoxin-like domain, structural genomics, NPPSFA;
          2.05A {Aquifex aeolicus VF5} PDB: 2ywf_A* 2ywg_A*
          2ywh_A* (A:484-600)
          Length = 117

 Score = 23.9 bits (52), Expect = 8.2
 Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 7/38 (18%)

Query: 1  LDKLLNAEEIPYFSLMLYRVYHHIHRDNAHILQKEIVS 38
          L  L+N + +   S +       +H D A    + +  
Sbjct: 5  LTVLINKKPVDALSFI-------VHADRAQKFARRVAE 35


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.329    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 378,669
Number of extensions: 10390
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 4
Length of query: 47
Length of database: 4,956,049
Length adjustment: 18
Effective length of query: 29
Effective length of database: 4,347,559
Effective search space: 126079211
Effective search space used: 126079211
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.2 bits)