Query 537021.9.peg.880_1
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 02:36:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_880.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1dj7_A Ferredoxin thioredoxin 40.8 5.1 0.00015 21.7 -0.6 13 21-33 81-93 (117)
2 >1rlf_A RLF, RLF-RBD; signal t 28.7 25 0.00075 18.0 1.3 15 7-21 20-34 (90)
3 >1ocy_A Bacteriophage T4 short 21.7 31 0.00093 17.5 0.8 32 8-39 14-46 (104)
4 >1rax_A Protein (RA-domain of 18.0 34 0.001 17.3 0.3 32 6-37 41-84 (115)
5 >3kh0_A Ralgds, ralgef, RAL gu 16.0 43 0.0013 16.7 0.4 31 6-36 38-80 (140)
6 >1dce_A Protein (RAB geranylge 13.3 30 0.0009 17.6 -1.0 11 16-26 24-34 (66)
7 >1ef5_A RGL; RAS-binding domai 11.6 34 0.001 17.3 -1.2 30 6-35 31-72 (103)
8 >1dzf_A DNA-directed RNA polym 10.6 83 0.0024 15.2 0.6 17 7-23 53-69 (92)
9 >1lam_A Leucine aminopeptidase 8.9 1.5E+02 0.0044 13.8 1.3 17 14-30 259-275 (308)
10 >1q8d_A GDNF family receptor a 8.2 1.2E+02 0.0036 14.4 0.6 14 15-28 56-78 (108)
No 1
>>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif, electron transport; 1.60A {Synechocystis SP} (A:)
Probab=40.77 E-value=5.1 Score=21.72 Aligned_cols=13 Identities=38% Similarity=0.974 Sum_probs=10.1
Q ss_pred CCCEEEEEEEEEE
Q ss_conf 7450440144488
Q 537021.9.peg.8 21 NKKWCHCGIFFQV 33 (43)
Q Consensus 21 nkkwchcgiffqv 33 (43)
..+-||||+|+.-
T Consensus 81 e~g~ChC~Lfvt~ 93 (117)
T 1dj7_A 81 ERKECHCMLFLTP 93 (117)
T ss_dssp HHCCCTTSSSBCT
T ss_pred HCCCEEEEEEECC
T ss_conf 5282557756466
No 2
>>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} (A:)
Probab=28.65 E-value=25 Score=18.00 Aligned_cols=15 Identities=40% Similarity=0.773 Sum_probs=13.6
Q ss_pred CEEEEEEEECCCCCC
Q ss_conf 024787873146897
Q 537021.9.peg.8 7 TYRAILLYSQEMTPN 21 (43)
Q Consensus 7 tyraillysqemtpn 21 (43)
-|+.|++-||+-||.
T Consensus 20 ~YKSIlltsqDktP~ 34 (90)
T 1rlf_A 20 VYKSILVTSQDKAPS 34 (90)
T ss_dssp SCCEEEEETTCCCTT
T ss_pred EEEEEEEECCCCCHH
T ss_conf 788899853886779
No 3
>>1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} (A:1-33,A:128-198)
Probab=21.72 E-value=31 Score=17.50 Aligned_cols=32 Identities=22% Similarity=0.585 Sum_probs=25.1
Q ss_pred EEEEEEEECCCCCCCCEEEEE-EEEEEECCEEE
Q ss_conf 247878731468974504401-44488336378
Q 537021.9.peg.8 8 YRAILLYSQEMTPNKKWCHCG-IFFQVVGNGFL 39 (43)
Q Consensus 8 yraillysqemtpnkkwchcg-iffqvvgngfl 39 (43)
..||..+...--|...|-.|. +|=..+++|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~a~FGaT~~sGyv 46 (104)
T 1ocy_A 14 VGAIMMWAADSLPSDAWRFCSGAFGNTRRSNFV 46 (104)
T ss_dssp TTCEEEESSSSCSSTTEEESCCTTCCCCSSSCC
T ss_pred CEEEEECCCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 527887228889986557335565654345655
No 4
>>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} (A:)
Probab=18.01 E-value=34 Score=17.31 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCEEEEEEEECCCCCC------------CCEEEEEEEEEEECCE
Q ss_conf 0024787873146897------------4504401444883363
Q 537021.9.peg.8 6 ETYRAILLYSQEMTPN------------KKWCHCGIFFQVVGNG 37 (43)
Q Consensus 6 etyraillysqemtpn------------kkwchcgiffqvvgng 37 (43)
.-|+.|++-||+-||. ..|+.-=-.+|+.-.+
T Consensus 41 n~YKSIlltsqDktP~VI~rAl~Khnl~~~~~~~y~L~QvLp~~ 84 (115)
T 1rax_A 41 NMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDD 84 (115)
T ss_dssp CCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEEEEECSSS
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 47888998528867799999999808997881321899985899
No 5
>>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A (A:)
Probab=15.99 E-value=43 Score=16.74 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=20.7
Q ss_pred CCEEEEEEEECCCCCC------------CCEEEEEEEEEEECC
Q ss_conf 0024787873146897------------450440144488336
Q 537021.9.peg.8 6 ETYRAILLYSQEMTPN------------KKWCHCGIFFQVVGN 36 (43)
Q Consensus 6 etyraillysqemtpn------------kkwchcgiffqvvgn 36 (43)
.-|+.|++-||+-||. ..|+.-=-.+|+.-.
T Consensus 38 nlYKSIllTsqDktP~VI~rAl~Khnl~~~~~~~Y~L~QvLp~ 80 (140)
T 3kh0_A 38 NMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSD 80 (140)
T ss_dssp EEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEET
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCC
T ss_conf 4888899853886779999999982899787233079998699
No 6
>>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} (A:352-417)
Probab=13.30 E-value=30 Score=17.56 Aligned_cols=11 Identities=55% Similarity=1.371 Sum_probs=8.9
Q ss_pred CCCCCCCCEEE
Q ss_conf 14689745044
Q 537021.9.peg.8 16 QEMTPNKKWCH 26 (43)
Q Consensus 16 qemtpnkkwch 26 (43)
+|+-|+.|||-
T Consensus 24 lelEPdsKW~L 34 (66)
T 1dce_A 24 QELEPENKWCL 34 (66)
T ss_dssp HHHCTTCHHHH
T ss_pred HHCCCCCCCHH
T ss_conf 73487544136
No 7
>>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} (A:)
Probab=11.55 E-value=34 Score=17.30 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=19.9
Q ss_pred CCEEEEEEEECCCCCC------------CCEEEEEEEEEEEC
Q ss_conf 0024787873146897------------45044014448833
Q 537021.9.peg.8 6 ETYRAILLYSQEMTPN------------KKWCHCGIFFQVVG 35 (43)
Q Consensus 6 etyraillysqemtpn------------kkwchcgiffqvvg 35 (43)
.-|+.|++-||+-||. ..|+.-=-.+|+.-
T Consensus 31 nlYKSIlltsqDktp~VI~rAl~Khnle~d~~~~Y~L~QvLp 72 (103)
T 1ef5_A 31 NMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVIS 72 (103)
T ss_dssp CCCCCBCCSSCCCTHHHHHHHTTTTTCCCCSSSSEEEEEECS
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 588889985288677999999998389977400518999758
No 8
>>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} (A:53-144)
Probab=10.65 E-value=83 Score=15.23 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=13.6
Q ss_pred CEEEEEEEECCCCCCCC
Q ss_conf 02478787314689745
Q 537021.9.peg.8 7 TYRAILLYSQEMTPNKK 23 (43)
Q Consensus 7 tyraillysqemtpnkk 23 (43)
-.|+|+.+.+.|||--|
T Consensus 53 ~~r~IlV~q~~itp~Ak 69 (92)
T 1dzf_A 53 FQTGIFVYQNNITPSAM 69 (92)
T ss_dssp CSEEEEEESSEECHHHH
T ss_pred CCEEEEEECCCCCHHHH
T ss_conf 65479997688897999
No 9
>>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (alpha-aminoacylpeptide); 1.60A {Bos taurus} (A:177-484)
Probab=8.92 E-value=1.5e+02 Score=13.85 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=13.3
Q ss_pred EECCCCCCCCEEEEEEE
Q ss_conf 73146897450440144
Q 537021.9.peg.8 14 YSQEMTPNKKWCHCGIF 30 (43)
Q Consensus 14 ysqemtpnkkwchcgif 30 (43)
+-++..++.+|.|+.|.
T Consensus 259 FL~~Fv~~~~W~HlDIA 275 (308)
T 1lam_A 259 FLKEFVTHPKWAHLDIA 275 (308)
T ss_dssp HHHTTCCCSSEEEEECG
T ss_pred HHHHHCCCCCEEEEECC
T ss_conf 99975899797999777
No 10
>>1q8d_A GDNF family receptor alpha 1; all-alpha, Cys-rich, hormone/growth factor receptor complex; 1.80A {Rattus norvegicus} (A:)
Probab=8.18 E-value=1.2e+02 Score=14.36 Aligned_cols=14 Identities=43% Similarity=1.175 Sum_probs=10.4
Q ss_pred ECCCCCC---------CCEEEEE
Q ss_conf 3146897---------4504401
Q 537021.9.peg.8 15 SQEMTPN---------KKWCHCG 28 (43)
Q Consensus 15 sqemtpn---------kkwchcg 28 (43)
...|||| .-||.|+
T Consensus 56 GT~~tpNYv~n~~~~v~~wC~C~ 78 (108)
T 1q8d_A 56 GTVXTPNYVDSSSLSVAPWCDCS 78 (108)
T ss_dssp TSTTCCC--------CCCSCBCT
T ss_pred CCCCCHHHHCCCCCCCCCCCCCC
T ss_conf 75455545325567458964268
Done!