Query 537021.9.peg.880_1
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 03:16:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_880.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj7_A Ferredoxin thioredoxin 48.7 2.3 9.6E-05 22.8 -0.6 12 21-32 81-92 (117)
2 1lfd_A Ralgds; RAL, effector i 22.5 18 0.00075 18.0 0.4 16 6-21 16-31 (87)
3 3kh0_A Ralgds, ralgef, RAL gua 17.6 27 0.0011 17.1 0.4 32 6-37 38-81 (140)
4 1rax_A Protein (RA-domain of R 16.9 26 0.0011 17.1 0.3 32 6-37 41-84 (115)
5 1q8d_A GDNF family receptor al 14.8 41 0.0017 16.1 0.8 14 15-28 56-78 (108)
6 1ef5_A RGL; RAS-binding domain 12.8 21 0.00087 17.6 -1.2 30 6-35 31-72 (103)
7 1r94_A Protein YFHF; tetrameri 11.9 47 0.002 15.7 0.4 17 19-35 92-109 (118)
8 2d2a_A SUFA protein; iron-sulf 10.2 71 0.003 14.8 0.9 15 19-33 130-145 (145)
9 1v54_F VI, cytochrome C oxidas 8.1 87 0.0037 14.3 0.6 14 23-36 80-94 (98)
10 1gh9_A 8.3 kDa protein (gene M 7.7 1.1E+02 0.0046 13.8 1.0 22 12-34 12-33 (71)
No 1
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif, electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=48.73 E-value=2.3 Score=22.78 Aligned_cols=12 Identities=42% Similarity=1.104 Sum_probs=9.7
Q ss_pred CCCEEEEEEEEE
Q ss_conf 745044014448
Q 537021.9.peg.8 21 NKKWCHCGIFFQ 32 (43)
Q Consensus 21 nkkwchcgiffq 32 (43)
..+-||||+|+.
T Consensus 81 e~g~ChC~LF~t 92 (117)
T 1dj7_A 81 ERKECHCMLFLT 92 (117)
T ss_dssp HHCCCTTSSSBC
T ss_pred HCCEEEEEEEEC
T ss_conf 338255765646
No 2
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=22.53 E-value=18 Score=18.00 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=13.9
Q ss_pred CCEEEEEEEECCCCCC
Q ss_conf 0024787873146897
Q 537021.9.peg.8 6 ETYRAILLYSQEMTPN 21 (43)
Q Consensus 6 etyraillysqemtpn 21 (43)
+-|+.|++-||+-||.
T Consensus 16 n~YKSIlltsqDrtp~ 31 (87)
T 1lfd_A 16 NMYKSILVTSQDKAPT 31 (87)
T ss_dssp EEEEEEEEETTCBHHH
T ss_pred CEEEEEEEECCCCCHH
T ss_conf 5888999863886779
No 3
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=17.56 E-value=27 Score=17.07 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=21.0
Q ss_pred CCEEEEEEEECCCCCC------------CCEEEEEEEEEEECCE
Q ss_conf 0024787873146897------------4504401444883363
Q 537021.9.peg.8 6 ETYRAILLYSQEMTPN------------KKWCHCGIFFQVVGNG 37 (43)
Q Consensus 6 etyraillysqemtpn------------kkwchcgiffqvvgng 37 (43)
+-|+.|++-||+-||. ..|+.-=-.+|+.-.+
T Consensus 38 nlYKSIllTsqDktP~VI~rAl~Khnle~~~~~~Y~L~QvLp~d 81 (140)
T 3kh0_A 38 NMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDD 81 (140)
T ss_dssp EEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETT
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 48988998428867799999999828997880211899976999
No 4
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=16.92 E-value=26 Score=17.09 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCEEEEEEEECCCCCC------------CCEEEEEEEEEEECCE
Q ss_conf 0024787873146897------------4504401444883363
Q 537021.9.peg.8 6 ETYRAILLYSQEMTPN------------KKWCHCGIFFQVVGNG 37 (43)
Q Consensus 6 etyraillysqemtpn------------kkwchcgiffqvvgng 37 (43)
+-|+.|++-||+-||. ..|+.-=-.+|+.-.+
T Consensus 41 nlYKSIlltsqDktP~VI~rAl~Khnl~~~~~~~Y~L~QvLp~d 84 (115)
T 1rax_A 41 NMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDD 84 (115)
T ss_dssp CCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEEEEECSSS
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 47888998528867799999999808997881321899985899
No 5
>1q8d_A GDNF family receptor alpha 1; all-alpha, Cys-rich, hormone/growth factor receptor complex; 1.80A {Rattus norvegicus} SCOP: a.228.1.1
Probab=14.82 E-value=41 Score=16.06 Aligned_cols=14 Identities=50% Similarity=1.277 Sum_probs=11.2
Q ss_pred ECCCCCC---------CCEEEEE
Q ss_conf 3146897---------4504401
Q 537021.9.peg.8 15 SQEMTPN---------KKWCHCG 28 (43)
Q Consensus 15 sqemtpn---------kkwchcg 28 (43)
.-.|||| .-||.|.
T Consensus 56 GT~mtpNyv~~~s~~v~pwC~C~ 78 (108)
T 1q8d_A 56 GTVMTPNYVDSSSLSVAPWCDCS 78 (108)
T ss_dssp TSTTCCC--------CCCSCBCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77666454356656307873048
No 6
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=12.81 E-value=21 Score=17.64 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=19.9
Q ss_pred CCEEEEEEEECCCCCC------C------CEEEEEEEEEEEC
Q ss_conf 0024787873146897------4------5044014448833
Q 537021.9.peg.8 6 ETYRAILLYSQEMTPN------K------KWCHCGIFFQVVG 35 (43)
Q Consensus 6 etyraillysqemtpn------k------kwchcgiffqvvg 35 (43)
+-|+.|++-||+-||. . .|+.-=-.+|+.-
T Consensus 31 n~YKSIlltsqDktP~VI~rAl~Khnl~~d~~~~Y~L~QvLp 72 (103)
T 1ef5_A 31 NMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVIS 72 (103)
T ss_dssp CCCCCBCCSSCCCTHHHHHHHTTTTTCCCCSSSSEEEEEECS
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 588889985288577999999998189978655708999858
No 7
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=11.85 E-value=47 Score=15.74 Aligned_cols=17 Identities=41% Similarity=0.880 Sum_probs=13.1
Q ss_pred CCC-CCEEEEEEEEEEEC
Q ss_conf 897-45044014448833
Q 537021.9.peg.8 19 TPN-KKWCHCGIFFQVVG 35 (43)
Q Consensus 19 tpn-kkwchcgiffqvvg 35 (43)
.|| +..|-||-=|.+--
T Consensus 92 NPna~~~CgCG~SF~~~~ 109 (118)
T 1r94_A 92 NPNVKDECGCGESFKLAA 109 (118)
T ss_dssp CTTCCC------------
T ss_pred CCCCCCCCCCCCCCCCCH
T ss_conf 999884058987623382
No 8
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=10.18 E-value=71 Score=14.76 Aligned_cols=15 Identities=40% Similarity=0.866 Sum_probs=10.9
Q ss_pred CCC-CCEEEEEEEEEE
Q ss_conf 897-450440144488
Q 537021.9.peg.8 19 TPN-KKWCHCGIFFQV 33 (43)
Q Consensus 19 tpn-kkwchcgiffqv 33 (43)
.|| +..|-||-=|.|
T Consensus 130 NPNa~~~CGCG~SFsV 145 (145)
T 2d2a_A 130 NPKAQNECGCGESFGV 145 (145)
T ss_dssp CTTTCSCCCCBCEEEC
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 9998952389877569
No 9
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* 3ag3_F* ...
Probab=8.09 E-value=87 Score=14.30 Aligned_cols=14 Identities=29% Similarity=0.952 Sum_probs=10.3
Q ss_pred CEE-EEEEEEEEECC
Q ss_conf 504-40144488336
Q 537021.9.peg.8 23 KWC-HCGIFFQVVGN 36 (43)
Q Consensus 23 kwc-hcgiffqvvgn 36 (43)
+-| .||-+|+.|-.
T Consensus 80 ~RC~eCG~~fkL~~~ 94 (98)
T 1v54_F 80 QRCPSCGTHYKLVPH 94 (98)
T ss_dssp EECTTTCCEEEEECC
T ss_pred CCCCCCCCEEEEEEC
T ss_conf 345877858998653
No 10
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=7.73 E-value=1.1e+02 Score=13.77 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=16.1
Q ss_pred EEEECCCCCCCCEEEEEEEEEEE
Q ss_conf 78731468974504401444883
Q 537021.9.peg.8 12 LLYSQEMTPNKKWCHCGIFFQVV 34 (43)
Q Consensus 12 llysqemtpnkkwchcgiffqvv 34 (43)
.|||.|-+..+| |.||--..|-
T Consensus 12 vLYskeg~kTrK-C~CGkTi~VK 33 (71)
T 1gh9_A 12 ALYSREGAKTRK-CVCGRTVNVK 33 (71)
T ss_dssp CEEEETTCSEEE-ETTTEEEECC
T ss_pred EEEECCCCCEEE-EECCCEEEHH
T ss_conf 544214631002-3227532223
Done!