RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.880_1 (43 letters) >gnl|CDD|145870 pfam02943, FeThRed_B, Ferredoxin thioredoxin reductase catalytic beta chain. Length = 105 Score = 24.2 bits (53), Expect = 7.5 Identities = 6/11 (54%), Positives = 8/11 (72%) Query: 22 KKWCHCGIFFQ 32 +K CHCG+F Sbjct: 74 RKECHCGLFLT 84 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.331 0.146 0.486 Gapped Lambda K H 0.267 0.0707 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 534,654 Number of extensions: 16134 Number of successful extensions: 46 Number of sequences better than 10.0: 1 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 2 Length of query: 43 Length of database: 6,263,737 Length adjustment: 17 Effective length of query: 26 Effective length of database: 5,896,384 Effective search space: 153305984 Effective search space used: 153305984 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 51 (23.5 bits)