RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.880_1
         (43 letters)



>gnl|CDD|145870 pfam02943, FeThRed_B, Ferredoxin thioredoxin reductase catalytic
          beta chain. 
          Length = 105

 Score = 24.2 bits (53), Expect = 7.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 22 KKWCHCGIFFQ 32
          +K CHCG+F  
Sbjct: 74 RKECHCGLFLT 84


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.331    0.146    0.486 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 534,654
Number of extensions: 16134
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 43
Length of database: 6,263,737
Length adjustment: 17
Effective length of query: 26
Effective length of database: 5,896,384
Effective search space: 153305984
Effective search space used: 153305984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.5 bits)