RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.880_1
         (43 letters)



>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
           protein.  Members of this family are the ATP-binding
           protein of the D-methionine ABC transporter complex.
           Known members belong to the Proteobacteria.
          Length = 343

 Score = 25.2 bits (55), Expect = 3.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 11  ILLYSQEMTPNKKWCHCGIFFQVVGNGFLLLNG 43
           ILL + EM   K+ C C     V+ NG L+  G
Sbjct: 194 ILLITHEMDVVKRICDC---VAVISNGELIEQG 223


>gnl|CDD|173168 PRK14705, PRK14705, glycogen branching enzyme; Provisional.
          Length = 1224

 Score = 24.6 bits (53), Expect = 5.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 12   LLYSQEMTPNKKWCHCGIFFQVV 34
            L Y+ E   N+KW H  I F +V
Sbjct: 989  LKYASEDPINRKWHHGTITFSLV 1011


>gnl|CDD|179562 PRK03343, PRK03343, transaldolase; Validated.
          Length = 368

 Score = 24.4 bits (54), Expect = 6.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 1   LLFSLETYRA 10
           L+FS+E YRA
Sbjct: 165 LIFSVERYRA 174


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.331    0.146    0.486 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 670,110
Number of extensions: 23165
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 3
Length of query: 43
Length of database: 5,994,473
Length adjustment: 17
Effective length of query: 26
Effective length of database: 5,627,137
Effective search space: 146305562
Effective search space used: 146305562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.3 bits)