Query 537021.9.peg.885_1 Match_columns 54 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 03:05:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_885.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2kel_A SVTR protein, uncharac 28.8 17 0.00051 18.6 0.5 18 19-36 34-51 (56) 2 >3h33_A Cytochrome C7, cytochr 26.1 21 0.00061 18.2 0.5 20 16-36 12-31 (37) 3 >3bxu_A Cytochrome C3; multihe 24.3 20 0.00059 18.2 0.2 20 16-36 12-31 (37) 4 >2dlq_A GLI-kruppel family mem 9.2 1.3E+02 0.0037 14.1 1.0 13 25-37 18-30 (30) 5 >1zq1_A Glutamyl-tRNA(Gln) ami 7.0 1.4E+02 0.0041 13.9 0.4 25 18-42 106-130 (135) 6 >3euh_C MUKE, chromosome parti 7.0 47 0.0014 16.3 -1.9 35 2-36 45-79 (105) 7 >2o0a_A S.cerevisiae chromosom 6.7 2.2E+02 0.0066 12.8 1.5 17 21-37 3-27 (298) 8 >1naq_A Periplasmic divalent c 6.3 2.4E+02 0.007 12.6 1.7 34 11-44 10-48 (112) 9 >3knu_A TRNA (guanine-N(1)-)-m 6.1 2.4E+02 0.0071 12.6 2.1 24 8-31 103-126 (188) 10 >1xew_Y SMC protein; structura 5.8 2.5E+02 0.0073 12.5 1.2 19 20-38 17-35 (48) No 1 >>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repressor; NMR {Sulfolobus islandicus rod-shaped VIRUS1} (A:) Probab=28.76 E-value=17 Score=18.57 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=14.2 Q ss_pred ECHHHHHHHHHHHHHHHH Q ss_conf 375899999999721021 Q 537021.9.peg.8 19 FNDKKIQELIREELRGCM 36 (54) Q Consensus 19 fndkkiqelireelrgcm 36 (54) -||++||..|||.+.... T Consensus 34 ~N~~~i~~~I~EAi~EYL 51 (56) T 2kel_A 34 KNNLQLTQAIEEAIKEYL 51 (56) T ss_dssp HSCCCHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHH T ss_conf 364879999999999999 No 2 >>3h33_A Cytochrome C7, cytochrome C3; multiheme cytochrome, electron transport; HET: HEM; 2.25A {Geobacter sulfurreducens} (A:1-37) Probab=26.08 E-value=21 Score=18.18 Aligned_cols=20 Identities=40% Similarity=0.732 Sum_probs=14.8 Q ss_pred EEEECHHHHHHHHHHHHHHHH Q ss_conf 576375899999999721021 Q 537021.9.peg.8 16 GITFNDKKIQELIREELRGCM 36 (54) Q Consensus 16 gitfndkkiqelireelrgcm 36 (54) .+||+.||-||+..+ -++|- T Consensus 12 ~VtF~HKkHq~~l~~-Ck~CH 31 (37) T 3h33_A 12 AVVFPHKKHQDALGE-CRGCH 31 (37) T ss_dssp BEEEEHHHHHHHHCC-STTTC T ss_pred CEECCHHHHHHCCCC-CCCCC T ss_conf 865588999870788-01047 No 3 >>3bxu_A Cytochrome C3; multiheme cytochromes, electron transport; HET: HEM; 1.35A {Geobacter sulfurreducens} PDB: 1os6_A* (A:1-37) Probab=24.30 E-value=20 Score=18.24 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=14.5 Q ss_pred EEEECHHHHHHHHHHHHHHHH Q ss_conf 576375899999999721021 Q 537021.9.peg.8 16 GITFNDKKIQELIREELRGCM 36 (54) Q Consensus 16 gitfndkkiqelireelrgcm 36 (54) .+||+.||-||+..+ -++|- T Consensus 12 ~VtF~HKkHq~~l~~-Ck~CH 31 (37) T 3bxu_A 12 NVTFDHKKHQTIVPD-CAVCH 31 (37) T ss_dssp EEEECHHHHHHHSSC-THHHH T ss_pred CEECCHHHHHHHCCC-CCCCC T ss_conf 865688999873788-00037 No 4 >>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:32-61) Probab=9.17 E-value=1.3e+02 Score=14.06 Aligned_cols=13 Identities=38% Similarity=0.871 Sum_probs=10.5 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999997210212 Q 537021.9.peg.8 25 QELIREELRGCMT 37 (54) Q Consensus 25 qelireelrgcmt 37 (54) ..|+..|.|.||+ T Consensus 18 enllehearncm~ 30 (30) T 2dlq_A 18 ENLLEHEARNCMN 30 (30) T ss_dssp HHHHHHHHHCCCC T ss_pred CCCCCCCCCCCCC T ss_conf 1112111111110 No 5 >>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} (A:304-438) Probab=7.00 E-value=1.4e+02 Score=13.87 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=19.5 Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6375899999999721021200200 Q 537021.9.peg.8 18 TFNDKKIQELIREELRGCMTIKSGI 42 (54) Q Consensus 18 tfndkkiqelireelrgcmtiksgi 42 (54) +.+-++||++....+||-|++.|.. T Consensus 106 ~~d~~~i~~~f~~~l~GE~~~~s~~ 130 (135) T 1zq1_A 106 TQNLEEVRKXXLTNYAGEITPYTRF 130 (135) T ss_dssp CCCHHHHHHHHHSCSSTTSCSSCBT T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCC T ss_conf 9999999999633667525887675 No 6 >>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} (C:85-189) Probab=6.96 E-value=47 Score=16.29 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=26.7 Q ss_pred CCCCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHH Q ss_conf 73200020257998576375899999999721021 Q 537021.9.peg.8 2 DAGKLTSNINLTLTGITFNDKKIQELIREELRGCM 36 (54) Q Consensus 2 dagkltsninltltgitfndkkiqelireelrgcm 36 (54) |..||-.-+|.--+|-.+...|.||-+|..||--- T Consensus 45 de~kLlk~vn~Rs~gsdlDk~kl~EkvrtsLrRLr 79 (105) T 3euh_C 45 DEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLNRLR 79 (105) T ss_dssp CHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 68999988356677542309999999999999998 No 7 >>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} (A:) Probab=6.72 E-value=2.2e+02 Score=12.78 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=9.8 Q ss_pred HHHHHHHHH--------HHHHHHHH Q ss_conf 589999999--------97210212 Q 537021.9.peg.8 21 DKKIQELIR--------EELRGCMT 37 (54) Q Consensus 21 dkkiqelir--------eelrgcmt 37 (54) ||--||+.| +|+|||+. T Consensus 3 DkmeqEq~rRRkLeNSIdElkG~iR 27 (298) T 2o0a_A 3 STVEKELLRSRRLENSIIEQKGTMR 27 (298) T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCCE T ss_pred CHHHHHHHHHHHHHHHHHHHHCEEE T ss_conf 3388999999888755998625166 No 8 >>1naq_A Periplasmic divalent cation tolerance protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; HET: MBO; 1.70A {Escherichia coli} (A:) Probab=6.26 E-value=2.4e+02 Score=12.64 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=23.7 Q ss_pred EEEEEEEEECHHH-----HHHHHHHHHHHHHHHHHHHCC Q ss_conf 5799857637589-----999999972102120020002 Q 537021.9.peg.8 11 NLTLTGITFNDKK-----IQELIREELRGCMTIKSGILS 44 (54) Q Consensus 11 nltltgitfndkk-----iqelireelrgcmtiksgils 44 (54) .+.+--+|+.|.. .+.|+++.|-.|..|-.+|-| T Consensus 10 ~~~lv~tT~~~~e~A~~la~~lv~~rLaACvni~p~i~S 48 (112) T 1naq_A 10 ASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATS 48 (112) T ss_dssp CEEEEEEEESSHHHHHHHHHHHHHTTSCSEEEEEEEEEE T ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCEEE T ss_conf 789999917999999999999997290999924798338 No 9 >>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} (A:1-188) Probab=6.11 E-value=2.4e+02 Score=12.59 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=20.1 Q ss_pred CCEEEEEEEEEECHHHHHHHHHHH Q ss_conf 202579985763758999999997 Q 537021.9.peg.8 8 SNINLTLTGITFNDKKIQELIREE 31 (54) Q Consensus 8 sninltltgitfndkkiqeliree 31 (54) --|-++-.|.+|+.+..+||.+++ T Consensus 103 ~vi~lSP~Gk~f~Q~~a~eLa~~~ 126 (188) T 3knu_A 103 KLMFTSPRGVSFTQDIARQTMNFD 126 (188) T ss_dssp EEEEEEEEEEECCHHHHHHHHTCS T ss_pred EEEEECCCCCCCCEEEEEECCCCC T ss_conf 599835898520130000012577 No 10 >>1xew_Y SMC protein; structural maintenance of chromosomes, ABC-atpases, condensin, cohesin, cell cycle; 2.00A {Pyrococcus furiosus} (Y:86-133) Probab=5.76 E-value=2.5e+02 Score=12.53 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=15.7 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 7589999999972102120 Q 537021.9.peg.8 20 NDKKIQELIREELRGCMTI 38 (54) Q Consensus 20 ndkkiqelireelrgcmti 38 (54) +.+++++.+++-.+|+..| T Consensus 17 ~~~~i~~~l~~~~~~~tvi 35 (48) T 1xew_Y 17 NVKRVADLIKESSKESQFI 35 (48) T ss_dssp HHHHHHHHHHHHTTTSEEE T ss_pred HHHHHHHHHHHHCCCCEEE T ss_conf 9999999999834677699 Done!