RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.885_1
         (54 letters)



>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
            protein/mitoxantrone resistance protein, ABC superfamily
            [Secondary metabolites biosynthesis, transport and
            catabolism].
          Length = 1381

 Score = 24.8 bits (54), Expect = 4.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 21   DKKIQELIREELRGCMTI 38
            D  IQ+ IREE + C  +
Sbjct: 1311 DALIQKTIREEFKDCTVL 1328


>gnl|CDD|147487 pfam05326, SVA, Seminal vesicle autoantigen (SVA).  This family
          consists of seminal vesicle autoantigen and
          prolactin-inducible (PIP) proteins. Seminal vesicle
          autoantigen (SVA) is specifically present in the
          seminal plasma of mice. This 19-kDa secretory
          glycoprotein suppresses the motility of spermatozoa by
          interacting with phospholipid. PIP, has several known
          functions. In saliva, this protein plays a role in host
          defence by binding to microorganisms such as
          Streptococcus. PIP is an aspartyl proteinase and it
          acts as a factor capable of suppressing T-cell
          apoptosis through its interaction with CD4.
          Length = 124

 Score = 24.7 bits (54), Expect = 5.9
 Identities = 10/46 (21%), Positives = 22/46 (47%)

Query: 6  LTSNINLTLTGITFNDKKIQELIREELRGCMTIKSGILSNRSAKIG 51
          L+ N+ +  T    N+  +   ++  ++ CM +K+ + SN   K  
Sbjct: 34 LSLNLKVPSTANKNNEVTVTLTVKTNVKECMVVKAYLESNPPIKGS 79


>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the
           Serine/Threonine Kinase, p38delta Mitogen-Activated
           Protein Kinase.  Serine/Threonine Kinases (STKs),
           p38delta subfamily, catalytic (c) domain. STKs catalyze
           the transfer of the gamma-phosphoryl group from ATP to
           serine/threonine residues on protein substrates. The
           p38delta subfamily is part of a larger superfamily that
           includes the catalytic domains of other protein STKs,
           protein tyrosine kinases, RIO kinases, aminoglycoside
           phosphotransferase, choline kinase, and phosphoinositide
           3-kinase. p38 kinases are mitogen-activated protein
           kinases (MAPKs), serving as important mediators of
           cellular responses to extracellular signals. They are
           activated by the MAPK kinases MKK3 and MKK6, which in
           turn are activated by upstream MAPK kinase kinases
           including TAK1, ASK1, and MLK3, in response to cellular
           stresses or inflammatory cytokines. Vertebrates contain
           four isoforms of p38, named alpha, beta, gamma, and
           delta. p38delta, also called MAPK13, is found in
           skeletal muscle, heart, lung, testis, pancreas, and
           small intestine. It regulates microtubule function by
           phosphorylating Tau. It activates the c-jun promoter and
           plays a role in G2 cell cycle arrest. It also controls
           the degration of c-Myb, which is associated with myeloid
           leukemia and poor prognosis in colorectal cancer.
           p38delta is the main isoform involved in regulating the
           differentiation and apoptosis of keratinocytes.
          Length = 342

 Score = 24.5 bits (53), Expect = 5.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 16  GITFNDKKIQELIREELRGCMTIKSGILSNRSAKIG 51
           G   ++ K+Q L+ + L G   I S  + +R  K G
Sbjct: 111 GHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPG 146


>gnl|CDD|147024 pfam04664, OGFr_N, Opioid growth factor receptor (OGFr) conserved
           region.  Opioid peptides act as growth factors in neural
           and non-neural cells and tissues, in addition to serving
           in neurotransmission/neuromodulation in the nervous
           system. The Opioid growth factor receptor is an integral
           membrane protein associated with the nucleus. The
           conserved region is situated at the N-terminus of the
           member proteins with a series of imperfect repeats lying
           immediately to its C-terminus.
          Length = 214

 Score = 24.3 bits (53), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 16  GITFNDKKIQELIREEL 32
           GI  ND+K  E+IR   
Sbjct: 98  GIILNDRKTGEVIRASN 114


>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminus, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resistance lung cancer cell in
           which p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 221

 Score = 23.9 bits (52), Expect = 9.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 21  DKKIQELIREELRGCMTI 38
           D  IQ+ IRE  + C  +
Sbjct: 175 DALIQKTIREAFKDCTVL 192


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.135    0.362 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 542,576
Number of extensions: 18222
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 7
Length of query: 54
Length of database: 6,263,737
Length adjustment: 27
Effective length of query: 27
Effective length of database: 5,680,294
Effective search space: 153367938
Effective search space used: 153367938
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)