RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.885_1 (54 letters) >d2d6fa2 c.88.1.1 (A:84-435) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 352 Score = 23.9 bits (51), Expect = 3.6 Identities = 7/29 (24%), Positives = 17/29 (58%) Query: 14 LTGITFNDKKIQELIREELRGCMTIKSGI 42 + G T + + +E++RE + G + ++ I Sbjct: 319 VLGQTDDPEMAREMMRENIAGEINERTSI 347 >d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein) {Desulfovibrio vulgaris [TaxId: 881]} Length = 553 Score = 24.0 bits (52), Expect = 4.1 Identities = 5/18 (27%), Positives = 11/18 (61%) Query: 13 TLTGITFNDKKIQELIRE 30 T+T ++D + + +I E Sbjct: 69 TITNANWDDARFEAMISE 86 >d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein) {Desulfovibrio desulfuricans [TaxId: 876]} Length = 543 Score = 23.6 bits (51), Expect = 5.3 Identities = 6/21 (28%), Positives = 10/21 (47%) Query: 13 TLTGITFNDKKIQELIREELR 33 T+T F+D + E +R Sbjct: 73 TITNANFDDDILAERVRMTCA 93 >d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Score = 22.8 bits (49), Expect = 7.5 Identities = 6/29 (20%), Positives = 15/29 (51%) Query: 21 DKKIQELIREELRGCMTIKSGILSNRSAK 49 D+K+++L+ + + + L NR+ Sbjct: 9 DEKLKKLVEQNGTDDWKVIANYLPNRTDV 37 >d2ocda1 c.88.1.1 (A:2-337) Asparaginase type II {Vibrio cholerae [TaxId: 666]} Length = 336 Score = 22.8 bits (48), Expect = 8.7 Identities = 6/25 (24%), Positives = 15/25 (60%) Query: 14 LTGITFNDKKIQELIREELRGCMTI 38 L + ++++ +++ LRG MT+ Sbjct: 312 LLSQNLSYEEVKAKMQQVLRGEMTL 336 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.135 0.362 Gapped Lambda K H 0.267 0.0487 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 181,350 Number of extensions: 5660 Number of successful extensions: 26 Number of sequences better than 10.0: 1 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 8 Length of query: 54 Length of database: 2,407,596 Length adjustment: 25 Effective length of query: 29 Effective length of database: 2,064,346 Effective search space: 59866034 Effective search space used: 59866034 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.5 bits)