RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.885_1
         (54 letters)



>d2d6fa2 c.88.1.1 (A:84-435) Glutamyl-tRNA(Gln) amidotransferase
           subunit D, GatD {Methanobacterium thermoautotrophicum
           [TaxId: 145262]}
          Length = 352

 Score = 23.9 bits (51), Expect = 3.6
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 14  LTGITFNDKKIQELIREELRGCMTIKSGI 42
           + G T + +  +E++RE + G +  ++ I
Sbjct: 319 VLGQTDDPEMAREMMRENIAGEINERTSI 347


>d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
          {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 553

 Score = 24.0 bits (52), Expect = 4.1
 Identities = 5/18 (27%), Positives = 11/18 (61%)

Query: 13 TLTGITFNDKKIQELIRE 30
          T+T   ++D + + +I E
Sbjct: 69 TITNANWDDARFEAMISE 86


>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
          {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 543

 Score = 23.6 bits (51), Expect = 5.3
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 13 TLTGITFNDKKIQELIREELR 33
          T+T   F+D  + E +R    
Sbjct: 73 TITNANFDDDILAERVRMTCA 93


>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 50

 Score = 22.8 bits (49), Expect = 7.5
 Identities = 6/29 (20%), Positives = 15/29 (51%)

Query: 21 DKKIQELIREELRGCMTIKSGILSNRSAK 49
          D+K+++L+ +       + +  L NR+  
Sbjct: 9  DEKLKKLVEQNGTDDWKVIANYLPNRTDV 37


>d2ocda1 c.88.1.1 (A:2-337) Asparaginase type II {Vibrio cholerae
           [TaxId: 666]}
          Length = 336

 Score = 22.8 bits (48), Expect = 8.7
 Identities = 6/25 (24%), Positives = 15/25 (60%)

Query: 14  LTGITFNDKKIQELIREELRGCMTI 38
           L     + ++++  +++ LRG MT+
Sbjct: 312 LLSQNLSYEEVKAKMQQVLRGEMTL 336


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.362 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 181,350
Number of extensions: 5660
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 8
Length of query: 54
Length of database: 2,407,596
Length adjustment: 25
Effective length of query: 29
Effective length of database: 2,064,346
Effective search space: 59866034
Effective search space used: 59866034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)