BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.885_1
         (54 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.885_1 
          Length = 54

 Score =  107 bits (268), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  MDAGKLTSNINLTLTGITFNDKKIQELIREELRGCMTIKSGILSNRSAKIGVRD 54
          MDAGKLTSNINLTLTGITFNDKKIQELIREELRGCMTIKSGILSNRSAKIGVRD
Sbjct: 1  MDAGKLTSNINLTLTGITFNDKKIQELIREELRGCMTIKSGILSNRSAKIGVRD 54


>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 954

 Score = 23.9 bits (50), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 15  TGITFNDKKIQELIREELRGCMTIKSGILSNRSAK 49
           T I+FN K+++ ++ E   G   + S I+ + + K
Sbjct: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK 187


>gi|254780595|ref|YP_003065008.1| nucleoside-diphosphate-sugar epimerase protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 289

 Score = 21.6 bits (44), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 19 FNDKKIQELIREEL 32
          F D+KI  L+RE+L
Sbjct: 49 FADQKINNLLREKL 62


>gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 457

 Score = 20.8 bits (42), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 5   KLTSNINLTLTGITFNDK-KIQEL 27
           ++T N++L + G+ FN K K+ E+
Sbjct: 126 EITQNLDLGILGMGFNPKWKLDEM 149


>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 737

 Score = 20.4 bits (41), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 10  INLTLTGITFNDKKIQELIREELRGCMTIKS 40
           ++ ++ GIT NDK  + + R E    + IK+
Sbjct: 336 LHFSIIGITTNDKLFRVIHRGEEVANLPIKA 366


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,709
Number of Sequences: 1233
Number of extensions: 834
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 54
length of database: 328,796
effective HSP length: 26
effective length of query: 28
effective length of database: 296,738
effective search space:  8308664
effective search space used:  8308664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)