HHsearch alignment of GI: peg_888 and MMDB domain: 3d3q_A_207-288

>3d3q_A (A:207-288) TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.92  E-value=1.4e-25  Score=188.14  Aligned_cols=82  Identities=27%  Similarity=0.497  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             78999999977765421134567777511386310134420685677898678999899999999999988888768862
Q 537021.9.peg.8  121 RSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQRGIIATNKYAKRQKTWLC  200 (217)
Q Consensus       121 r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~~~~~~~~~IGYke~~~yL~g~~~~~e~~e~~~~~Tr~yAKRQ~TWfr  200 (217)
                      |++|++||+.||+.|+++||++||+.|++.+ .++.++++||||+|+.+||+|+++.++|++.++.+||||||||+||||
T Consensus         1 R~~L~~rI~~Rv~~M~~~Gli~Ev~~L~~~~-~~~~~~~~aIGy~E~~~~l~g~~~~~eai~~i~~~Tr~yAKRQ~tWfr   79 (82)
T 3d3q_A            1 RETLYLRINKRVDIXLGHGLFNEVQHLVEQG-FEASQSXQAIGYKELVPVIKGNISXENAVEKLKQHSRQYAKRQLTWFK   79 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT-CTTSSGGGSTTTTTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC-CCCCCHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8999999999999999768669999999817-765533303279999999869999999999999999999989999828


Q ss_pred             CCC
Q ss_conf             888
Q 537021.9.peg.8  201 HQF  203 (217)
Q Consensus       201 ~~~  203 (217)
                      ++.
T Consensus        80 ~~~   82 (82)
T 3d3q_A           80 NKX   82 (82)
T ss_dssp             HTC
T ss_pred             CCC
T ss_conf             999