HHsearch alignment of GI: peg_888 and MMDB domain: 3exa_A_1-200_283-322
>3exa_A (A:1-200,A:283-322) TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=99.42 E-value=1.8e-12 Score=102.29 Aligned_cols=142 Identities=27% Similarity=0.399 Sum_probs=112.6
Q ss_pred HHH-HHHHCCCCEEEECCCCHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHH
Q ss_conf 899-999639940897893279999961724-488999899999999999622355566553116232023570156999
Q 537021.9.peg.8 4 KKL-QRYKKRFLPIIVGGTGLYFRALTGQLS-IMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRI 81 (217)
Q Consensus 4 k~~-e~~~r~kiPIiVGGTglY~~all~g~~-~~p~~~~~ir~~~~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri 81 (217)
..+ +.+.+|++||++||+++|.+++..+.. ..|-+++..++.++..+...|.+.+++.|+.+||..+..++++|.+|+
T Consensus 83 ~~i~~~~~~gk~~Ii~g~~~~~~~~~~~~~~~~~i~i~~~~~~~l~~rl~~rg~~~~~~~l~ri~~~~~e~~~~~d~dri 162 (240)
T 3exa_A 83 PLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRRV 162 (240)
T ss_dssp HHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSCTTCHHHH
T ss_pred HHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHCCCCCHHHH
T ss_conf 99999997699818970739999999807411356663255568999998638699999998656577764287722778
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHEEEEECCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999985348874677541545677700100001078678--------99999997776542113456777751
Q 537021.9.peg.8 82 ARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERS--------ALKERIRRRFTQMLESGAIDEIRSLM 148 (217)
Q Consensus 82 ~RaLEi~~~tGk~~s~~~~~~~~~~~~~~~~~~i~l~~~r~--------~L~~rI~~R~~~Ml~~GlieEv~~L~ 148 (217)
+|++++...||+.+|.+.+....+. ..++++.|+|.+|-- ...++|..= . -+-.|-++|-..|-
T Consensus 163 i~n~ei~~at~~l~s~l~~~~~~~~-~~~d~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 234 (240)
T 3exa_A 163 IRALEIIKLTGKTVTEQARHEEETP-SPYNLVXIGLTXENVTWFDXTDVDFDKKIXEI-H-NFIAGKLEEKSKLE 234 (240)
T ss_dssp HHHHHHHHHTC---------------CCSEEEEEEEECCTEEEEECTTCCHHHHHHHH-H-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCC-CCCCCEEEEEECCCCCEECCCCCCHHHHHHHH-H-HHHHHHHHCCCCCC
T ss_conf 9999877412452456554124677-65550389980669866369862789999999-9-99988874214232