HHsearch results for GI: peg_888 and protein with PDBid: 3d3q_A
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=100.00 E-value=0 Score=431.62 Aligned_cols=209 Identities=27% Similarity=0.418 Sum_probs=186.2
Q ss_pred HHHHH-HHHHCCCCEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHCCHHHHCCCCCH
Q ss_conf 46899-9996399408978932799999617244889998999999999----996223555665531162320235701
Q 537021.9.peg.8 2 LSKKL-QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREK----LKQYGSHILHDELSSLDSIVARQIHPS 76 (217)
Q Consensus 2 ~~k~~-e~~~r~kiPIiVGGTglY~~all~g~~~~p~~~~~ir~~~~~~----~~~~g~~~l~~~L~~~DP~~a~~i~~n 76 (217)
+.+.| +++++|++||||||||||++||++|+++.|..++..+...... .+..|++.||++|+++||++|++||+|
T Consensus 85 a~~~i~~i~~~~kiPIlVGGTglYi~all~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i~~n 164 (340)
T 3d3q_A 85 AEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPN 164 (340)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHCHHHHHHSCTT
T ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999975997199817088999998487755678857788999998888987369999999983259999736966
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 56999999999853488746775415456777001000010786789999999777654211345677775113863101
Q 537021.9.peg.8 77 DGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDL 156 (217)
Q Consensus 77 d~~Ri~RaLEi~~~tGk~~s~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~~~~ 156 (217)
|++||+|||||+..||+++|++...... ...+++++|+|.+||+.||+||+.||+.|+++||++||+.|+++|+ .+.
T Consensus 165 d~rRi~RalEi~~~tgk~~s~~~~~~~~--~~~~~~~~i~L~~~r~~L~~rI~~Rvd~Ml~~GlleEv~~L~~~~~-~~~ 241 (340)
T 3d3q_A 165 NRKRVLRAIEYYLKTKKLLSSRKKVQQF--TENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGF-EAS 241 (340)
T ss_dssp CHHHHHHHHHHHHHHCSCSHHHHHHHHH--SBCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTC-TTS
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHCCCCC--CCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC-CCC
T ss_conf 6306789999999828842444213677--7886644011476799999999999999998788999999997489-966
Q ss_pred HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 344206856778986789998999999999999888887688628887531169830
Q 537021.9.peg.8 157 PIMKAIGVRDIIALLKGEINYDETLQRGIIATNKYAKRQKTWLCHQFQADWIRISSI 213 (217)
Q Consensus 157 ~~~~~IGYke~~~yL~g~~~~~e~~e~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~ 213 (217)
++++||||||+.+||+|++++++|++.++++||||||||+||||++++++|+++++.
T Consensus 242 ~~~kaIGYkE~~~yL~g~islee~ie~i~~~TrqyAKRQ~TWfR~~~~i~w~d~~~~ 298 (340)
T 3d3q_A 242 QSMQAIGYKELVPVIKGNISMENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERM 298 (340)
T ss_dssp SGGGSTTTTTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEETTTC
T ss_pred CCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf 000346099999998699999999999999999999999998089999916688856