HHsearch results for GI: peg_888 and protein with PDBid: 3d3q_A

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=100.00  E-value=0  Score=431.62  Aligned_cols=209  Identities=27%  Similarity=0.418  Sum_probs=186.2

Q ss_pred             HHHHH-HHHHCCCCEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHCCHHHHCCCCCH
Q ss_conf             46899-9996399408978932799999617244889998999999999----996223555665531162320235701
Q 537021.9.peg.8    2 LSKKL-QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREK----LKQYGSHILHDELSSLDSIVARQIHPS   76 (217)
Q Consensus         2 ~~k~~-e~~~r~kiPIiVGGTglY~~all~g~~~~p~~~~~ir~~~~~~----~~~~g~~~l~~~L~~~DP~~a~~i~~n   76 (217)
                      +.+.| +++++|++||||||||||++||++|+++.|..++..+......    .+..|++.||++|+++||++|++||+|
T Consensus        85 a~~~i~~i~~~~kiPIlVGGTglYi~all~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i~~n  164 (340)
T 3d3q_A           85 AEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPN  164 (340)
T ss_dssp             HHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHCHHHHHHSCTT
T ss_pred             HHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999975997199817088999998487755678857788999998888987369999999983259999736966


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             56999999999853488746775415456777001000010786789999999777654211345677775113863101
Q 537021.9.peg.8   77 DGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDL  156 (217)
Q Consensus        77 d~~Ri~RaLEi~~~tGk~~s~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~~~~  156 (217)
                      |++||+|||||+..||+++|++......  ...+++++|+|.+||+.||+||+.||+.|+++||++||+.|+++|+ .+.
T Consensus       165 d~rRi~RalEi~~~tgk~~s~~~~~~~~--~~~~~~~~i~L~~~r~~L~~rI~~Rvd~Ml~~GlleEv~~L~~~~~-~~~  241 (340)
T 3d3q_A          165 NRKRVLRAIEYYLKTKKLLSSRKKVQQF--TENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGF-EAS  241 (340)
T ss_dssp             CHHHHHHHHHHHHHHCSCSHHHHHHHHH--SBCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTC-TTS
T ss_pred             CCCHHHHHHHHHHHHCCCHHHHHCCCCC--CCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC-CCC
T ss_conf             6306789999999828842444213677--7886644011476799999999999999998788999999997489-966


Q ss_pred             HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf             344206856778986789998999999999999888887688628887531169830
Q 537021.9.peg.8  157 PIMKAIGVRDIIALLKGEINYDETLQRGIIATNKYAKRQKTWLCHQFQADWIRISSI  213 (217)
Q Consensus       157 ~~~~~IGYke~~~yL~g~~~~~e~~e~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~  213 (217)
                      ++++||||||+.+||+|++++++|++.++++||||||||+||||++++++|+++++.
T Consensus       242 ~~~kaIGYkE~~~yL~g~islee~ie~i~~~TrqyAKRQ~TWfR~~~~i~w~d~~~~  298 (340)
T 3d3q_A          242 QSMQAIGYKELVPVIKGNISMENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERM  298 (340)
T ss_dssp             SGGGSTTTTTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEETTTC
T ss_pred             CCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf             000346099999998699999999999999999999999998089999916688856