PSIBLAST alignment of GI: peg_888 and protein with PDB id: 3d3q
>gi|194320048|pdb|3D3Q|A Chain A, Crystal Structure Of Trna Delta(2)-Isopentenylpyrophosphate Transferase (Se0981) From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target Ser100 Length = 340
>gi|194320049|pdb|3D3Q|B Chain B, Crystal Structure Of Trna Delta(2)-Isopentenylpyrophosphate Transferase (Se0981) From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target Ser100 Length = 340
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 53/213 (24%), Positives = 103/213 (48%), Gaps = 8/213 (3%)
Query: 2 LSKKL-QRYKKRFLPIIVGGTGLYFRALTGQLSI----MPEIPTAIREKIREKLKQYGSH 56
K + ++ +PII GGTGLY ++L + + E + ++L+ ++
Sbjct: 85 AEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKXKQVKLKLKELEHLNNN 144
Query: 57 ILHDELSSLDSIVARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKII 116
LH+ L+S D A+ IHP++ +R+ RA+E L + + + ++ F I
Sbjct: 145 KLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSS--RKKVQQFTENYDTLLIG 202
Query: 117 ILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEIN 176
I R L RI +R L G +E++ L++ +AIG ++++ ++KG I+
Sbjct: 203 IEXSRETLYLRINKRVDIXLGHGLFNEVQHLVEQGFEASQSX-QAIGYKELVPVIKGNIS 261
Query: 177 YDETLQRGIIATNKYAKRQKTWLCHQFQADWIR 209
+ +++ + +YAKRQ TW ++ W+
Sbjct: 262 XENAVEKLKQHSRQYAKRQLTWFKNKXNVHWLN 294