RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= 537021.9.peg.888_1
(217 letters)
>gnl|CDD|178856 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase;
Reviewed.
Length = 307
Score = 221 bits (566), Expect = 1e-58
Identities = 80/203 (39%), Positives = 119/203 (58%), Gaps = 3/203 (1%)
Query: 14 LPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQI 73
LPI+VGGTGLY +AL LS +P +R ++ + G LH EL+ +D A +I
Sbjct: 95 LPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAAEEGWEALHAELAEIDPEAAARI 154
Query: 74 HPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFT 133
HP+D QRI RALE+ ++G+ + E K+ P I + P+R L ERI +R
Sbjct: 155 HPNDPQRIIRALEVYELTGKPLSELQKRGKPPPYR---VLIIGLDPDREELYERINQRVD 211
Query: 134 QMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQRGIIATNKYAK 193
QMLE G ++E+R+L+ DLP M+AIG ++++A L GEI+ +E +++ AT +YAK
Sbjct: 212 QMLEQGLLEEVRALLARGYLPDLPAMRAIGYKELLAYLDGEISLEEAIEKIKQATRQYAK 271
Query: 194 RQKTWLCHQFQADWIRISSIDDL 216
RQ TW Q W+ +S + L
Sbjct: 272 RQLTWFRRQPDIHWLDLSPEEAL 294
>gnl|CDD|161743 TIGR00174, miaA, tRNA isopentenyltransferase (miaA). Catalyzes the
first step in the modification of an adenosine near the
anticodon to 2-methylthio-N6-isopentyladenosine.
Length = 287
Score = 161 bits (410), Expect = 1e-40
Identities = 66/195 (33%), Positives = 109/195 (55%), Gaps = 2/195 (1%)
Query: 14 LPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQI 73
+P++VGGTGLY +AL LS P IRE++ ++ G L++EL +D + A +I
Sbjct: 90 IPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAEEQGWDFLYNELKKVDPVAAAKI 149
Query: 74 HPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFT 133
HP+D +R+ RALE+ +G+ E +K+ A +I + R L +RI +R
Sbjct: 150 HPNDTRRVQRALEVFYATGKPPSELFKE--QKIELFYDAVQIGLASSREPLHQRIEQRVH 207
Query: 134 QMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQRGIIATNKYAK 193
MLESG + E+++L DLP ++AIG ++ + L+G ++ ++ ++R T +YAK
Sbjct: 208 DMLESGLLAEVKALYAQYDLCDLPSIQAIGYKEFLLYLEGTVSLEDAIERIKCNTRQYAK 267
Query: 194 RQKTWLCHQFQADWI 208
RQ TW W+
Sbjct: 268 RQLTWFRKWSDVLWL 282
>gnl|CDD|173191 PRK14729, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase;
Provisional.
Length = 300
Score = 73.3 bits (180), Expect = 4e-14
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 13/200 (6%)
Query: 4 KKLQRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELS 63
K+L++ KK +PI VGG+ YF+ L L P + + IR + G L +EL
Sbjct: 86 KELRQQKK--IPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLFTLKGKSYLLEELK 143
Query: 64 SLDSIVARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERS- 122
+D I I+ +D RI R+LE+ +G I +F K+ N F + + I +R
Sbjct: 144 RVDFIRYESINKNDIYRIKRSLEVYYQTGIPISQFLKKQ-NMF-----KNILAIGLKRPM 197
Query: 123 -ALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDETL 181
+K RI R M++ G + EI+SL+ + + P K IG R+ + L K Y
Sbjct: 198 EEMKSRIISRVNNMIDCGLLSEIKSLLGKGYNENTPAFKGIGYREFL-LWKSRPCYMLND 256
Query: 182 QRGIIATNK--YAKRQKTWL 199
+I N Y KRQ T+
Sbjct: 257 IINLIVKNSFLYVKRQMTFF 276
>gnl|CDD|178349 PLN02748, PLN02748, tRNA dimethylallyltransferase.
Length = 468
Score = 45.3 bits (107), Expect = 1e-05
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 35/185 (18%)
Query: 14 LPIIVGGTGLYFRALTGQLSI------MPEIPTAIREKIREKLKQY------GSHILHDE 61
LP+IVGGT Y +AL + + + + E + ++
Sbjct: 113 LPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGLGNDDEDHGYEL 172
Query: 62 LSSLDSIVARQIHPSDGQRIARALEI---------KLVSGQSIIEFWKQAPNP-----FI 107
L LD + A +IHP++ ++I R LE+ KL G++ E W + N FI
Sbjct: 173 LKELDPVAANRIHPNNHRKINRYLELYATTGVLPSKLYQGKA-AENWGRISNSRFDCCFI 231
Query: 108 PLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDI 167
+++ + + L + +R M+++G +DE+ + + +AIGVR+
Sbjct: 232 CVDA--------DTAVLDRYVNQRVDCMIDAGLLDEVYDIYDPGADYTRGLRQAIGVREF 283
Query: 168 IALLK 172
L+
Sbjct: 284 EDFLR 288
>gnl|CDD|178433 PLN02840, PLN02840, tRNA dimethylallyltransferase.
Length = 421
Score = 39.0 bits (91), Expect = 8e-04
Identities = 59/250 (23%), Positives = 89/250 (35%), Gaps = 68/250 (27%)
Query: 14 LPIIVGGTGLYFR-ALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSL------D 66
+PI+ GGTGLY R + G+ P++P + E E + EL D
Sbjct: 112 VPIVAGGTGLYLRWYIYGK----PDVPKSSPEITSE---------VWSELVDFQKNGDWD 158
Query: 67 SIV----------ARQIHPSDGQRIARALEIKLVSGQSIIEFW----------------- 99
+ V AR + +D R+ R+LEI SG F
Sbjct: 159 AAVELVVNAGDPKARSLPRNDWYRLRRSLEIIKSSGSPPSAFSLPYDSFREQLVTEDTDS 218
Query: 100 KQAPNPFIPLESAHKII---ILPERSALKERIRRRFTQML--ESGAIDEIRSLMKMNLSL 154
E + + + R L I R +ML +G + E L+ + L
Sbjct: 219 SLEDGSSAETELDYDFLCFFLSSPRLDLYRSIDLRCEEMLAGTNGILSEASWLLDLGLLP 278
Query: 155 DL-PIMKAIGVRDIIALL------KGEINYDETL------QRGIIATNKYAKRQKTWLCH 201
+ +AIG R + L GE + E L Q A+ +AKRQ TW +
Sbjct: 279 NSNSATRAIGYRQAMEYLLQCRQNGGESSPQEFLAFLSKFQT---ASRNFAKRQMTWFRN 335
Query: 202 QFQADWIRIS 211
+ W+ S
Sbjct: 336 EPIYHWLDAS 345
>gnl|CDD|161882 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase,
regulatory subunit. Apparant second copies of
histidyl-tRNA synthetase, found in Bacillus subtilis,
Synechocystis sp., Aquifex aeolicus, and others, are in
fact a regulatory subunit of ATP
phosphoribosyltransferase, and usually encoded by a gene
adjacent to that encoding the catalytic subunit.
Length = 314
Score = 28.0 bits (63), Expect = 2.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 117 ILPERSALKERIRRRFTQMLESGAIDEI 144
+LPE +A KE I R+ + S EI
Sbjct: 3 LLPEEAARKEEIERQLQDVFRSWGYQEI 30
>gnl|CDD|184075 PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional.
Length = 267
Score = 27.5 bits (62), Expect = 2.7
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 41 AIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIAR 83
A RE+ R +L+ G+H + D ++ L +++A I R+AR
Sbjct: 226 ARRERARARLRAAGAHYVIDTIADLPAVIA-DI----EARLAR 263
>gnl|CDD|177401 PHA02572, nrdA, ribonucleoside-diphosphate reductase subunit alpha;
Provisional.
Length = 753
Score = 27.0 bits (60), Expect = 3.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 29 TGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSI 68
T ++S+ PT I +R +Q+ S ++ + SLDSI
Sbjct: 200 TRKISL----PTPIMAGVRTPTRQFSSCVVIESGDSLDSI 235
>gnl|CDD|130489 TIGR01422, phosphonatase, phosphonoacetaldehyde hydrolase. This
enzyme is a member of the Haloacid Dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases
(pfam00702), and contains a modified version of the
conserved catalytic motifs of that superfamily: the
first motif is usually DxDx(T/V), here it is DxAxT, and
in the third motif the normal conserved lysine is
instead an arginine. Additionally, the enzyme contains a
unique conserved catalytic lysine (B. cereus pos. 53)
which is involved in the binding and activation of the
substrate through the formation of a Schiff base. The
substrate of this enzyme is the product of
2-aminoethylphosphonate (AEP) transaminase,
phosphonoacetaldehyde. This degradation pathway for AEP
may be related to its toxic properties which are
utilized by microorganisms as a chemical warfare agent.
Length = 253
Score = 26.5 bits (59), Expect = 4.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 40 TAIREKIREKLKQYGSHILHDELSSLDSIVA 70
A R + +LK G+H + D L+ L +++A
Sbjct: 223 EARRAEATARLKAAGAHYVIDTLAELPAVIA 253
>gnl|CDD|183325 PRK11820, PRK11820, hypothetical protein; Provisional.
Length = 288
Score = 26.3 bits (59), Expect = 6.1
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 33 SIMPEIPTAIREKIREKLKQ 52
++ PEI RE++RE+L++
Sbjct: 173 ALAPEILEEYRERLRERLEE 192
>gnl|CDD|183431 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 581
Score = 26.1 bits (58), Expect = 6.5
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 31 QLSI--MPEIPTAIREKIREKLKQYGSHI 57
+LS+ + ++ + IR + EK +G H+
Sbjct: 14 KLSLDELEQLASEIRTALLEKDSAHGGHV 42
>gnl|CDD|148133 pfam06335, DUF1054, Protein of unknown function (DUF1054). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 194
Score = 25.7 bits (57), Expect = 9.2
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 41 AIREKIREKLKQYGSHILHDELSSL 65
AIRE+IR K ++ G + LS+L
Sbjct: 20 AIREQIRPKFEELGEYFAP-YLSTL 43
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.139 0.399
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,750,948
Number of extensions: 246322
Number of successful extensions: 697
Number of sequences better than 10.0: 1
Number of HSP's gapped: 691
Number of HSP's successfully gapped: 30
Length of query: 217
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 127
Effective length of database: 4,049,753
Effective search space: 514318631
Effective search space used: 514318631
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.1 bits)