RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.888_1
         (217 letters)



>3eph_A TRNA isopentenyltransferase; transferase, alternative
           initiation, ATP-binding, cytoplasm, mitochondrion,
           nucleotide-binding, nucleus; 2.95A {Saccharomyces
           cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
           (A:1-111,A:185-343)
          Length = 270

 Score = 89.7 bits (222), Expect = 3e-19
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 12/115 (10%)

Query: 107 IPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMK-------MNLSLDLPIM 159
                   + +  +   L +R+  R   MLE GA+ EI+ L +            +  + 
Sbjct: 111 RLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVW 170

Query: 160 KAIGVRDIIALLKGE-----INYDETLQRGIIATNKYAKRQKTWLCHQFQADWIR 209
           + IG ++ +  L G+     +  ++ ++R    T +YAKRQ  W+      D   
Sbjct: 171 QVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKG 225



 Score = 28.1 bits (62), Expect = 1.1
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 14/150 (9%)

Query: 7   QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAI---REKIREKLKQYGSHILHDELS 63
             +++  +PI+VGGT  Y + L  +      +   +    E + ++L      +L     
Sbjct: 86  DIHRRGKIPIVVGGTHYYLQTLFNKRLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGAL 145

Query: 64  SLDSIVARQIHPSDGQRIARALEIKLVSGQSI--IEFW----KQAPNPFIPLESAHKIII 117
                  +Q++    Q      + +    Q I   EF      +  +  + LE   + + 
Sbjct: 146 Q----EIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMK 201

Query: 118 LPERSALKERIRRRFTQMLESGAIDEIRSL 147
              R   K R  +   +ML      +I  L
Sbjct: 202 TRTRQYAK-RQVKWIKKMLIPDIKGDIYLL 230


>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase;
           ATP-binding, nucleotide-binding, nucleotidyltransferase,
           tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB:
           3crq_A 3crr_A (A:213-296)
          Length = 84

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 121 RSALKERIRRRFTQMLESGAIDEIRSLMKM-NLSLDLPIMKAIGVRDIIALLKGEINYDE 179
           R  L  RI +RF QMLE G I E+ +L    +L   LP ++A+G R +   L G+++Y E
Sbjct: 1   RQVLHARIAQRFRQMLEQGFIAEVEALHARSDLHAGLPSIRAVGYRQVWDYLDGKLSYAE 60

Query: 180 TLQRGIIATNKYAKRQKTWL 199
             +RGIIAT + AKRQ TWL
Sbjct: 61  MTERGIIATRQLAKRQFTWL 80


>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase;
           nucleoside modification, isopentenyl-tRNA transferase,
           MIAA, transferase/RNA complex; 2.50A {Escherichia coli
           k-12} PDB: 2zxu_A* 2zm5_A (A:206-289)
          Length = 84

 Score = 86.8 bits (215), Expect = 2e-18
 Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query: 121 RSALKERIRRRFTQMLESGAIDEIRSLMKM-NLSLDLPIMKAIGVRDIIALLKGEINYDE 179
           R  L +RI +RF QML SG   E+R+L    +L  DLP ++ +G R + + L+GEI+YDE
Sbjct: 2   RELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDE 61

Query: 180 TLQRGIIATNKYAKRQKTWL 199
            + RG+ AT + AKRQ TWL
Sbjct: 62  MVYRGVCATRQLAKRQITWL 81


>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase;
           alpha-beta protein, structural genomics, PSI-2, protein
           structure initiative; 2.30A {Bacillus halodurans} PDB:
           2qgn_A (A:201-282)
          Length = 82

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 121 RSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDET 180
           R  L +RI RR  Q +E G IDE + L    +  D   ++AIG ++    L G +  +E 
Sbjct: 1   RDVLYDRINRRVDQXVEEGLIDEAKKLYDRGIR-DCQSVQAIGYKEXYDYLDGNVTLEEA 59

Query: 181 LQRGIIATNKYAKRQKTWLCHQ 202
           +      + +YAKRQ TW  ++
Sbjct: 60  IDTLKRNSRRYAKRQLTWFRNK 81


>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase;
           alpha-beta protein, structural genomics, PSI-2; 2.70A
           {Staphylococcus epidermidis atcc 12228} (A:207-288)
          Length = 82

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 121 RSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDET 180
           R  L  RI +R    L  G  +E++ L++          +AIG ++++ ++KG I+ +  
Sbjct: 1   RETLYLRINKRVDIXLGHGLFNEVQHLVEQGFE-ASQSXQAIGYKELVPVIKGNISXENA 59

Query: 181 LQRGIIATNKYAKRQKTWLCHQ 202
           +++    + +YAKRQ TW  ++
Sbjct: 60  VEKLKQHSRQYAKRQLTWFKNK 81


>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein;
           HET: ATP; 2.37A {Humulus lupulus} (A:184-294)
          Length = 111

 Score = 78.6 bits (193), Expect = 7e-16
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 24/108 (22%)

Query: 124 LKERIRRRFTQMLESGAIDEIRSLMKM-------NLSLDLPIMKAIGVRDIIALLKGEIN 176
           L + + +R   MLE G  DE+             + +    + KAIGV +     +    
Sbjct: 4   LTDYLAKRVDDMLELGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRP 63

Query: 177 -----------------YDETLQRGIIATNKYAKRQKTWLCHQFQADW 207
                            ++E ++     T   AKRQ   +     A W
Sbjct: 64  GDVEGEDPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGKILRLKGAGW 111


>3eph_A TRNA isopentenyltransferase; transferase, alternative
           initiation, ATP-binding, cytoplasm, mitochondrion,
           nucleotide-binding, nucleus; 2.95A {Saccharomyces
           cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* (A:112-184)
          Length = 73

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 15/69 (21%), Positives = 31/69 (44%)

Query: 35  MPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIKLVSGQS 94
                  +  K  + L+     ++++ L   D  +A + HP+D +R+ R LEI   +G+ 
Sbjct: 3   TKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKK 62

Query: 95  IIEFWKQAP 103
             E + +  
Sbjct: 63  PSETFNEQK 71


>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase;
           ATP-binding, nucleotide-binding, nucleotidyltransferase,
           tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB:
           3crq_A 3crr_A (A:1-212,A:297-323)
          Length = 239

 Score = 64.5 bits (156), Expect = 1e-11
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 2/124 (1%)

Query: 9   YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSI 68
             +  +P++VGGT LY++AL   L+ MP     +R  I  + +  G   LH +L+ +D  
Sbjct: 91  TARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPE 150

Query: 69  VARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERI 128
            A +IHP+D QR+ RALE+  + G S+ +  ++        +           +  +  I
Sbjct: 151 SAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQSAE--KADFDASGRNQLPYTVAQLAI 208

Query: 129 RRRF 132
               
Sbjct: 209 APEQ 212


>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase;
          alpha-beta protein, structural genomics, PSI-2; 2.70A
          {Staphylococcus epidermidis atcc 12228} (A:120-181)
          Length = 62

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 36 PEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIKLVSGQ 93
           +    ++ K++E L+   ++ LH+ L+S D   A+ IHP++ +R+ RA+E  L + +
Sbjct: 6  EDKXKQVKLKLKE-LEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKK 62


>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase;
           alpha-beta protein, structural genomics, PSI-2, protein
           structure initiative; 2.30A {Bacillus halodurans} PDB:
           2qgn_A (A:1-200,A:283-322)
          Length = 240

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 1/98 (1%)

Query: 15  PIIVGGTGLYFRALTGQLS-IMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQI 73
           P +VGGTGLY  A+  Q +          R ++   +  YG   LHD+LS +D   A  I
Sbjct: 95  PFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAI 154

Query: 74  HPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLES 111
           HP++ +R+ RALEI  ++G+++ E  +       P   
Sbjct: 155 HPNNYRRVIRALEIIKLTGKTVTEQARHEEETPSPYNL 192


>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase;
           nucleoside modification, isopentenyl-tRNA transferase,
           MIAA, transferase/RNA complex; 2.50A {Escherichia coli
           k-12} PDB: 2zxu_A* 2zm5_A (A:1-205,A:290-316)
          Length = 232

 Score = 56.1 bits (134), Expect = 3e-09
 Identities = 34/97 (35%), Positives = 59/97 (60%)

Query: 9   YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSI 68
                +P++VGGT LYF+AL   LS +P     +R +I ++  + G   LH +L  +D +
Sbjct: 96  TAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPV 155

Query: 69  VARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNP 105
            A +IHP+D QR++RALE+  +SG+++ E  + + + 
Sbjct: 156 AAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDA 192


>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
           biosynthesis, plasmid; HET: DST AMP; 2.10A
           {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
           (A:1-125)
          Length = 125

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 4/37 (10%), Positives = 9/37 (24%)

Query: 9   YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREK 45
            K     I+ GG+      +             ++  
Sbjct: 87  RKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRL 123


>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase;
           alpha-beta protein, structural genomics, PSI-2; 2.70A
           {Staphylococcus epidermidis atcc 12228}
           (A:1-119,A:196-206,A:289-340)
          Length = 182

 Score = 29.6 bits (66), Expect = 0.29
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 9   YKKRFLPIIVGGTGLYFRALT 29
            ++  +PII GGTGLY ++L 
Sbjct: 93  TRRGKVPIIAGGTGLYIQSLL 113


>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II
           fructose-1,6-bisphosphate aldolase, glycolytic pathway,
           giardia lamblia, drug target; HET: PGH; 1.75A {Giardia
           intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* (A:)
          Length = 323

 Score = 29.1 bits (65), Expect = 0.44
 Identities = 19/145 (13%), Positives = 51/145 (35%), Gaps = 22/145 (15%)

Query: 22  GLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDG--- 78
           G Y       + +  +    I +     L  +GS  +  ++  + +    ++  + G   
Sbjct: 179 GAYKFKSESDIRLAIDRVKTISDLTGIPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPI 238

Query: 79  QRIARAL-----------EIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKER 127
           + I  A+           + ++    +I + + + P  F P +      + P R A+ E 
Sbjct: 239 ESIVHAIGEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRD-----YLGPGRDAITEM 293

Query: 128 IRRRFTQMLESGAIDEIRSLMKMNL 152
           +  +      +G   + +    ++L
Sbjct: 294 LIPKIKAFGSAGHAGDYK---VVSL 315


>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
           oxidoreductase, monooxygenase, sterol biosynthesis,
           lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
           {Trypanosoma brucei} PDB: 3g1q_A* 2wv2_A* 3khm_A*
           3k1o_A* 2wx2_A* 2wuz_A* (A:74-327,A:381-450)
          Length = 324

 Score = 28.9 bits (63), Expect = 0.58
 Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 17/113 (15%)

Query: 35  MPEIPTAIREKIREKLKQYGSHILHDELSSLDSIV--ARQIHPSD--------------G 78
             +   A+R++I E   Q   + + DE+   +     + +  P +              G
Sbjct: 212 NVKHLEALRKEIEEFPAQLNYNNVMDEMPFAERCARESIRRDPVEGAFIGFGAGVHKCIG 271

Query: 79  QRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRR 131
           Q+    L++K +   +   +  Q     +P    H +++ P  S  + +  RR
Sbjct: 272 QKFGL-LQVKTILATAFRSYDFQLLRDEVPDPDYHTMVVGPTASQCRVKYIRR 323


>3g23_A Peptidase U61, LD-carboxypeptidase A; structural genomics,
           joint center for structural genomics, JCSG; HET: MSE;
           1.89A {Novosphingobium aromaticivorans DSM12444}
           (A:156-262)
          Length = 107

 Score = 27.0 bits (60), Expect = 2.0
 Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLM 148
             +P + +  ++ + E +     + R    +    A   I  L 
Sbjct: 24  RLLP-DLSGHVVXIEEVAEHHYAVDRLLFHVTSCLADAGIAGLR 66


>3l6d_A Putative oxidoreductase; structural genomics, protein
           structure initiative, NEW YORK structural genomix
           research consortium, NYSGXRC, PSI-2; HET: MSE; 1.90A
           {Pseudomonas putida} (A:1-168)
          Length = 168

 Score = 27.2 bits (59), Expect = 2.0
 Identities = 5/59 (8%), Positives = 15/59 (25%), Gaps = 2/59 (3%)

Query: 1   MLSKKLQRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILH 59
            L   + +    ++   +            +   +        E+ R  L+    H + 
Sbjct: 110 ALQGLVNQAGGHYVKGXIVAYPRN--VGHRESHSIHTGDREAFEQHRALLEGLAGHTVF 166


>2k5w_A Hypothetical cytosolic protein BCR103A; unknown function,
           structural genomics, PSI-2, protein structure
           initiative; NMR {Bacillus cereus atcc 14579} (A:)
          Length = 117

 Score = 26.7 bits (59), Expect = 2.2
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 37  EIPTAIREKIREKLKQYGSH 56
           ++P  +++K   KL+ +  H
Sbjct: 97  DLPEKVKDKFTIKLEHHHHH 116


>3gjz_A Microcin immunity protein MCCF; niaid structural genomic
           centers for infectious diseases, csgid, immune system,
           structural genomics; 2.10A {Bacillus anthracis str}
           (A:143-336)
          Length = 194

 Score = 26.4 bits (58), Expect = 2.8
 Identities = 9/44 (20%), Positives = 20/44 (45%)

Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLM 148
           P+ P      I+ + + S     I R F+ +  +G  D++  ++
Sbjct: 82  PYXPCIQEGDILFIEDSSKDAATIERSFSFLKINGVFDKVSGII 125


>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure,
           structural genomics, PSI-2, protein structure
           initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus
           rimd 2210633} (A:)
          Length = 129

 Score = 26.5 bits (58), Expect = 3.0
 Identities = 9/60 (15%), Positives = 20/60 (33%)

Query: 50  LKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPL 109
            + YG     + L +   +   ++ P    R A    +     ++ +E       P I +
Sbjct: 16  SRYYGLANSPEALVNGLPLSDGKLTPFLLPRAAERAGLVAKENRAELEKISSLILPAILV 75


>1zl0_A Hypothetical protein PA5198; structural genomics, PSI,
           protein structure initiative, midwest center for
           structural genomics, MCSG; HET: TLA PEG; 1.10A
           {Pseudomonas aeruginosa} (A:119-311)
          Length = 193

 Score = 26.4 bits (58), Expect = 3.4
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLM 148
                  A  I++L +      R+ R   Q+LES    ++ ++ 
Sbjct: 87  LGGLHAPAGSILVLEDVGEPYYRLERSLWQLLESIDARQLGAIC 130


>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics,
           dimer; 2.40A {Thermoplasma acidophilum}
           (A:1-44,A:96-165,A:229-328)
          Length = 214

 Score = 25.8 bits (56), Expect = 4.2
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 117 ILPERSALKERIRRRFTQMLESGAIDEIRSL 147
             PE   +++ I +   +  E+     I  L
Sbjct: 15  FYPEDXDVEKFIFKTAEEAAEAFGFRRIDFL 45


>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron,
           3D-structure, hydrogen peroxide; HET: OMT HEM; 1.97A
           {Vibrio salmonicida LFI1238} PDB: 1m85_A* 1mqf_A*
           1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A* 1h6n_A* 3hb6_A*
           (A:50-483)
          Length = 434

 Score = 25.9 bits (56), Expect = 4.6
 Identities = 4/19 (21%), Positives = 9/19 (47%)

Query: 71  RQIHPSDGQRIARALEIKL 89
            +  P+ G+ I + L   +
Sbjct: 411 YKADPAYGEGIGKLLGFDI 429


>2k5q_A Hypothetical membrane associated protein BCR97A; NESG,
           Q812L6 protein, GFT structural genomics, PSI-2, protein
           structure initiative; NMR {Bacillus cereus atcc 14579}
           (A:)
          Length = 105

 Score = 25.5 bits (56), Expect = 5.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 37  EIPTAIREKIREKLKQYGSH 56
           E+P  ++EK+  KL+ +  H
Sbjct: 85  ELPAKVKEKLGVKLEHHHHH 104


>2iuf_A Catalase; compound I, hydrogen peroxide, oxidoreductase;
           HET: NAG HDD; 1.71A {Penicillium janthinellum}
           (A:60-511)
          Length = 452

 Score = 25.6 bits (55), Expect = 5.5
 Identities = 4/19 (21%), Positives = 10/19 (52%)

Query: 71  RQIHPSDGQRIARALEIKL 89
            +I  +   R+A A+ ++ 
Sbjct: 424 NRISDNLATRVASAIGVEA 442


>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
           {Exiguobacterium oxidotolerans} (A:53-491)
          Length = 439

 Score = 25.5 bits (55), Expect = 5.6
 Identities = 4/19 (21%), Positives = 11/19 (57%)

Query: 71  RQIHPSDGQRIARALEIKL 89
            +   S G++++ AL + +
Sbjct: 412 YRADASLGEKLSEALNVDI 430


>2a8e_A Hypothetical protein YKTB; X-RAY, NESG, Q45498, structural
          genomics, PSI, protein structure initiative; 2.50A
          {Bacillus subtilis} (A:)
          Length = 220

 Score = 25.5 bits (56), Expect = 5.6
 Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 40 TAIREKIREKLKQYGSHILHDELSSL 65
            ++E +R KL   G H     LS+L
Sbjct: 24 EVLKETVRPKLTALGEHFA-PTLSAL 48


>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH;
           1.45A {Escherichia coli} (A:)
          Length = 286

 Score = 25.6 bits (56), Expect = 5.7
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 18/102 (17%)

Query: 34  IMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIAR---ALEIKLV 90
           I  +    IRE +   L  +G+  + DE           +  +    + +   A E+K+ 
Sbjct: 189 IDFQRLAEIREVVDVPLVLHGASDVPDE----------FVRRTIELGVTKVNVATELKIA 238

Query: 91  SGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRF 132
              ++  ++ + P    P        +     A+KE +R + 
Sbjct: 239 FAGAVKAWFAENPQGNDPRY-----YMRVGMDAMKEVVRNKI 275


>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase;
           3.0A {Nostoc punctiforme} PDB: 2j68_A (A:358-657)
          Length = 300

 Score = 25.2 bits (55), Expect = 6.4
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 42  IREKIREKLKQYGSHILHDELSSLDSIVARQI 73
            RE     L++     + D+ ++      + I
Sbjct: 79  KREAFNAALQKAFEQYITDKSAAWTLTAEKDI 110


>1vcs_A Vesicle transport through interaction with T- snares homolog
           1A; HABC domain, VTI1, UP and DOWN three helix bundle,
           LEFT-handed twist; NMR {Mus musculus} (A:)
          Length = 102

 Score = 25.5 bits (56), Expect = 6.4
 Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 2/38 (5%)

Query: 37  EIPTAIREKIREKLKQYGSHI--LHDELSSLDSIVARQ 72
           EIP   R     +++ Y   +  L  +           
Sbjct: 63  EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIASGPS 100


>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel,
           wrapping region, C-terminal helical region, tetramer,
           heme group; HET: HEM; 2.30A {Enterococcus faecalis V583}
           (A:51-484)
          Length = 434

 Score = 25.2 bits (54), Expect = 6.4
 Identities = 5/19 (26%), Positives = 13/19 (68%)

Query: 71  RQIHPSDGQRIARALEIKL 89
            +++P  G R+A+A++ + 
Sbjct: 410 TRVNPEYGARVAQAIKQQA 428


>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG,
           structural genomics, PSI-2, protein structure
           initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus}
           (A:)
          Length = 139

 Score = 24.7 bits (54), Expect = 9.5
 Identities = 5/29 (17%), Positives = 14/29 (48%)

Query: 157 PIMKAIGVRDIIALLKGEINYDETLQRGI 185
           P++  + V +I   + GE   +   ++ +
Sbjct: 3   PVLAGLSVEEIREAVSGEYLIEPREEKXV 31


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.139    0.399 

Gapped
Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,718,182
Number of extensions: 78852
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 44
Length of query: 217
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 132
Effective length of database: 2,082,624
Effective search space: 274906368
Effective search space used: 274906368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.9 bits)