RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.888_1 (217 letters) >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* (A:1-111,A:185-343) Length = 270 Score = 89.7 bits (222), Expect = 3e-19 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 12/115 (10%) Query: 107 IPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMK-------MNLSLDLPIM 159 + + + L +R+ R MLE GA+ EI+ L + + + Sbjct: 111 RLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVW 170 Query: 160 KAIGVRDIIALLKGE-----INYDETLQRGIIATNKYAKRQKTWLCHQFQADWIR 209 + IG ++ + L G+ + ++ ++R T +YAKRQ W+ D Sbjct: 171 QVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKG 225 Score = 28.1 bits (62), Expect = 1.1 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 14/150 (9%) Query: 7 QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAI---REKIREKLKQYGSHILHDELS 63 +++ +PI+VGGT Y + L + + + E + ++L +L Sbjct: 86 DIHRRGKIPIVVGGTHYYLQTLFNKRLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGAL 145 Query: 64 SLDSIVARQIHPSDGQRIARALEIKLVSGQSI--IEFW----KQAPNPFIPLESAHKIII 117 +Q++ Q + + Q I EF + + + LE + + Sbjct: 146 Q----EIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMK 201 Query: 118 LPERSALKERIRRRFTQMLESGAIDEIRSL 147 R K R + +ML +I L Sbjct: 202 TRTRQYAK-RQVKWIKKMLIPDIKGDIYLL 230 >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A (A:213-296) Length = 84 Score = 87.5 bits (217), Expect = 1e-18 Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 1/80 (1%) Query: 121 RSALKERIRRRFTQMLESGAIDEIRSLMKM-NLSLDLPIMKAIGVRDIIALLKGEINYDE 179 R L RI +RF QMLE G I E+ +L +L LP ++A+G R + L G+++Y E Sbjct: 1 RQVLHARIAQRFRQMLEQGFIAEVEALHARSDLHAGLPSIRAVGYRQVWDYLDGKLSYAE 60 Query: 180 TLQRGIIATNKYAKRQKTWL 199 +RGIIAT + AKRQ TWL Sbjct: 61 MTERGIIATRQLAKRQFTWL 80 >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A (A:206-289) Length = 84 Score = 86.8 bits (215), Expect = 2e-18 Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 1/80 (1%) Query: 121 RSALKERIRRRFTQMLESGAIDEIRSLMKM-NLSLDLPIMKAIGVRDIIALLKGEINYDE 179 R L +RI +RF QML SG E+R+L +L DLP ++ +G R + + L+GEI+YDE Sbjct: 2 RELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDE 61 Query: 180 TLQRGIIATNKYAKRQKTWL 199 + RG+ AT + AKRQ TWL Sbjct: 62 MVYRGVCATRQLAKRQITWL 81 >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A (A:201-282) Length = 82 Score = 84.4 bits (209), Expect = 1e-17 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 121 RSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDET 180 R L +RI RR Q +E G IDE + L + D ++AIG ++ L G + +E Sbjct: 1 RDVLYDRINRRVDQXVEEGLIDEAKKLYDRGIR-DCQSVQAIGYKEXYDYLDGNVTLEEA 59 Query: 181 LQRGIIATNKYAKRQKTWLCHQ 202 + + +YAKRQ TW ++ Sbjct: 60 IDTLKRNSRRYAKRQLTWFRNK 81 >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} (A:207-288) Length = 82 Score = 84.0 bits (208), Expect = 1e-17 Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 121 RSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDET 180 R L RI +R L G +E++ L++ +AIG ++++ ++KG I+ + Sbjct: 1 RETLYLRINKRVDIXLGHGLFNEVQHLVEQGFE-ASQSXQAIGYKELVPVIKGNISXENA 59 Query: 181 LQRGIIATNKYAKRQKTWLCHQ 202 +++ + +YAKRQ TW ++ Sbjct: 60 VEKLKQHSRQYAKRQLTWFKNK 81 >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} (A:184-294) Length = 111 Score = 78.6 bits (193), Expect = 7e-16 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 24/108 (22%) Query: 124 LKERIRRRFTQMLESGAIDEIRSLMKM-------NLSLDLPIMKAIGVRDIIALLKGEIN 176 L + + +R MLE G DE+ + + + KAIGV + + Sbjct: 4 LTDYLAKRVDDMLELGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRP 63 Query: 177 -----------------YDETLQRGIIATNKYAKRQKTWLCHQFQADW 207 ++E ++ T AKRQ + A W Sbjct: 64 GDVEGEDPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGKILRLKGAGW 111 >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* (A:112-184) Length = 73 Score = 70.5 bits (173), Expect = 2e-13 Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 35 MPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIKLVSGQS 94 + K + L+ ++++ L D +A + HP+D +R+ R LEI +G+ Sbjct: 3 TKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKK 62 Query: 95 IIEFWKQAP 103 E + + Sbjct: 63 PSETFNEQK 71 >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A (A:1-212,A:297-323) Length = 239 Score = 64.5 bits (156), Expect = 1e-11 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 2/124 (1%) Query: 9 YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSI 68 + +P++VGGT LY++AL L+ MP +R I + + G LH +L+ +D Sbjct: 91 TARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPE 150 Query: 69 VARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERI 128 A +IHP+D QR+ RALE+ + G S+ + ++ + + + I Sbjct: 151 SAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQSAE--KADFDASGRNQLPYTVAQLAI 208 Query: 129 RRRF 132 Sbjct: 209 APEQ 212 >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} (A:120-181) Length = 62 Score = 60.5 bits (147), Expect = 2e-10 Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 36 PEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIKLVSGQ 93 + ++ K++E L+ ++ LH+ L+S D A+ IHP++ +R+ RA+E L + + Sbjct: 6 EDKXKQVKLKLKE-LEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKK 62 >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A (A:1-200,A:283-322) Length = 240 Score = 56.7 bits (136), Expect = 2e-09 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 1/98 (1%) Query: 15 PIIVGGTGLYFRALTGQLS-IMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQI 73 P +VGGTGLY A+ Q + R ++ + YG LHD+LS +D A I Sbjct: 95 PFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAI 154 Query: 74 HPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLES 111 HP++ +R+ RALEI ++G+++ E + P Sbjct: 155 HPNNYRRVIRALEIIKLTGKTVTEQARHEEETPSPYNL 192 >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A (A:1-205,A:290-316) Length = 232 Score = 56.1 bits (134), Expect = 3e-09 Identities = 34/97 (35%), Positives = 59/97 (60%) Query: 9 YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSI 68 +P++VGGT LYF+AL LS +P +R +I ++ + G LH +L +D + Sbjct: 96 TAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPV 155 Query: 69 VARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNP 105 A +IHP+D QR++RALE+ +SG+++ E + + + Sbjct: 156 AAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDA 192 >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A (A:1-125) Length = 125 Score = 36.0 bits (83), Expect = 0.004 Identities = 4/37 (10%), Positives = 9/37 (24%) Query: 9 YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREK 45 K I+ GG+ + ++ Sbjct: 87 RKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRL 123 >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} (A:1-119,A:196-206,A:289-340) Length = 182 Score = 29.6 bits (66), Expect = 0.29 Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 9 YKKRFLPIIVGGTGLYFRALT 29 ++ +PII GGTGLY ++L Sbjct: 93 TRRGKVPIIAGGTGLYIQSLL 113 >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* (A:) Length = 323 Score = 29.1 bits (65), Expect = 0.44 Identities = 19/145 (13%), Positives = 51/145 (35%), Gaps = 22/145 (15%) Query: 22 GLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDG--- 78 G Y + + + I + L +GS + ++ + + ++ + G Sbjct: 179 GAYKFKSESDIRLAIDRVKTISDLTGIPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPI 238 Query: 79 QRIARAL-----------EIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKER 127 + I A+ + ++ +I + + + P F P + + P R A+ E Sbjct: 239 ESIVHAIGEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRD-----YLGPGRDAITEM 293 Query: 128 IRRRFTQMLESGAIDEIRSLMKMNL 152 + + +G + + ++L Sbjct: 294 LIPKIKAFGSAGHAGDYK---VVSL 315 >3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3g1q_A* 2wv2_A* 3khm_A* 3k1o_A* 2wx2_A* 2wuz_A* (A:74-327,A:381-450) Length = 324 Score = 28.9 bits (63), Expect = 0.58 Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 17/113 (15%) Query: 35 MPEIPTAIREKIREKLKQYGSHILHDELSSLDSIV--ARQIHPSD--------------G 78 + A+R++I E Q + + DE+ + + + P + G Sbjct: 212 NVKHLEALRKEIEEFPAQLNYNNVMDEMPFAERCARESIRRDPVEGAFIGFGAGVHKCIG 271 Query: 79 QRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRR 131 Q+ L++K + + + Q +P H +++ P S + + RR Sbjct: 272 QKFGL-LQVKTILATAFRSYDFQLLRDEVPDPDYHTMVVGPTASQCRVKYIRR 323 >3g23_A Peptidase U61, LD-carboxypeptidase A; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.89A {Novosphingobium aromaticivorans DSM12444} (A:156-262) Length = 107 Score = 27.0 bits (60), Expect = 2.0 Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 1/44 (2%) Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLM 148 +P + + ++ + E + + R + A I L Sbjct: 24 RLLP-DLSGHVVXIEEVAEHHYAVDRLLFHVTSCLADAGIAGLR 66 >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; HET: MSE; 1.90A {Pseudomonas putida} (A:1-168) Length = 168 Score = 27.2 bits (59), Expect = 2.0 Identities = 5/59 (8%), Positives = 15/59 (25%), Gaps = 2/59 (3%) Query: 1 MLSKKLQRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILH 59 L + + ++ + + + E+ R L+ H + Sbjct: 110 ALQGLVNQAGGHYVKGXIVAYPRN--VGHRESHSIHTGDREAFEQHRALLEGLAGHTVF 166 >2k5w_A Hypothetical cytosolic protein BCR103A; unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} (A:) Length = 117 Score = 26.7 bits (59), Expect = 2.2 Identities = 5/20 (25%), Positives = 12/20 (60%) Query: 37 EIPTAIREKIREKLKQYGSH 56 ++P +++K KL+ + H Sbjct: 97 DLPEKVKDKFTIKLEHHHHH 116 >3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str} (A:143-336) Length = 194 Score = 26.4 bits (58), Expect = 2.8 Identities = 9/44 (20%), Positives = 20/44 (45%) Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLM 148 P+ P I+ + + S I R F+ + +G D++ ++ Sbjct: 82 PYXPCIQEGDILFIEDSSKDAATIERSFSFLKINGVFDKVSGII 125 >3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633} (A:) Length = 129 Score = 26.5 bits (58), Expect = 3.0 Identities = 9/60 (15%), Positives = 20/60 (33%) Query: 50 LKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPL 109 + YG + L + + ++ P R A + ++ +E P I + Sbjct: 16 SRYYGLANSPEALVNGLPLSDGKLTPFLLPRAAERAGLVAKENRAELEKISSLILPAILV 75 >1zl0_A Hypothetical protein PA5198; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} (A:119-311) Length = 193 Score = 26.4 bits (58), Expect = 3.4 Identities = 9/44 (20%), Positives = 18/44 (40%) Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLM 148 A I++L + R+ R Q+LES ++ ++ Sbjct: 87 LGGLHAPAGSILVLEDVGEPYYRLERSLWQLLESIDARQLGAIC 130 >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} (A:1-44,A:96-165,A:229-328) Length = 214 Score = 25.8 bits (56), Expect = 4.2 Identities = 6/31 (19%), Positives = 12/31 (38%) Query: 117 ILPERSALKERIRRRFTQMLESGAIDEIRSL 147 PE +++ I + + E+ I L Sbjct: 15 FYPEDXDVEKFIFKTAEEAAEAFGFRRIDFL 45 >2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, 3D-structure, hydrogen peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida LFI1238} PDB: 1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A* 1h6n_A* 3hb6_A* (A:50-483) Length = 434 Score = 25.9 bits (56), Expect = 4.6 Identities = 4/19 (21%), Positives = 9/19 (47%) Query: 71 RQIHPSDGQRIARALEIKL 89 + P+ G+ I + L + Sbjct: 411 YKADPAYGEGIGKLLGFDI 429 >2k5q_A Hypothetical membrane associated protein BCR97A; NESG, Q812L6 protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} (A:) Length = 105 Score = 25.5 bits (56), Expect = 5.5 Identities = 7/20 (35%), Positives = 13/20 (65%) Query: 37 EIPTAIREKIREKLKQYGSH 56 E+P ++EK+ KL+ + H Sbjct: 85 ELPAKVKEKLGVKLEHHHHH 104 >2iuf_A Catalase; compound I, hydrogen peroxide, oxidoreductase; HET: NAG HDD; 1.71A {Penicillium janthinellum} (A:60-511) Length = 452 Score = 25.6 bits (55), Expect = 5.5 Identities = 4/19 (21%), Positives = 10/19 (52%) Query: 71 RQIHPSDGQRIARALEIKL 89 +I + R+A A+ ++ Sbjct: 424 NRISDNLATRVASAIGVEA 442 >2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A {Exiguobacterium oxidotolerans} (A:53-491) Length = 439 Score = 25.5 bits (55), Expect = 5.6 Identities = 4/19 (21%), Positives = 11/19 (57%) Query: 71 RQIHPSDGQRIARALEIKL 89 + S G++++ AL + + Sbjct: 412 YRADASLGEKLSEALNVDI 430 >2a8e_A Hypothetical protein YKTB; X-RAY, NESG, Q45498, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus subtilis} (A:) Length = 220 Score = 25.5 bits (56), Expect = 5.6 Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%) Query: 40 TAIREKIREKLKQYGSHILHDELSSL 65 ++E +R KL G H LS+L Sbjct: 24 EVLKETVRPKLTALGEHFA-PTLSAL 48 >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} (A:) Length = 286 Score = 25.6 bits (56), Expect = 5.7 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 18/102 (17%) Query: 34 IMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIAR---ALEIKLV 90 I + IRE + L +G+ + DE + + + + A E+K+ Sbjct: 189 IDFQRLAEIREVVDVPLVLHGASDVPDE----------FVRRTIELGVTKVNVATELKIA 238 Query: 91 SGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRF 132 ++ ++ + P P + A+KE +R + Sbjct: 239 FAGAVKAWFAENPQGNDPRY-----YMRVGMDAMKEVVRNKI 275 >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A (A:358-657) Length = 300 Score = 25.2 bits (55), Expect = 6.4 Identities = 5/32 (15%), Positives = 12/32 (37%) Query: 42 IREKIREKLKQYGSHILHDELSSLDSIVARQI 73 RE L++ + D+ ++ + I Sbjct: 79 KREAFNAALQKAFEQYITDKSAAWTLTAEKDI 110 >1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} (A:) Length = 102 Score = 25.5 bits (56), Expect = 6.4 Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 2/38 (5%) Query: 37 EIPTAIREKIREKLKQYGSHI--LHDELSSLDSIVARQ 72 EIP R +++ Y + L + Sbjct: 63 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIASGPS 100 >1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping region, C-terminal helical region, tetramer, heme group; HET: HEM; 2.30A {Enterococcus faecalis V583} (A:51-484) Length = 434 Score = 25.2 bits (54), Expect = 6.4 Identities = 5/19 (26%), Positives = 13/19 (68%) Query: 71 RQIHPSDGQRIARALEIKL 89 +++P G R+A+A++ + Sbjct: 410 TRVNPEYGARVAQAIKQQA 428 >2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} (A:) Length = 139 Score = 24.7 bits (54), Expect = 9.5 Identities = 5/29 (17%), Positives = 14/29 (48%) Query: 157 PIMKAIGVRDIIALLKGEINYDETLQRGI 185 P++ + V +I + GE + ++ + Sbjct: 3 PVLAGLSVEEIREAVSGEYLIEPREEKXV 31 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.139 0.399 Gapped Lambda K H 0.267 0.0462 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,718,182 Number of extensions: 78852 Number of successful extensions: 323 Number of sequences better than 10.0: 1 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 44 Length of query: 217 Length of database: 4,956,049 Length adjustment: 85 Effective length of query: 132 Effective length of database: 2,082,624 Effective search space: 274906368 Effective search space used: 274906368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (24.9 bits)