RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 537021.9.peg.888_1
(217 letters)
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core
{Synechocystis sp., GluR0 [TaxId: 1143]}
Length = 226
Score = 27.8 bits (60), Expect = 0.74
Identities = 10/46 (21%), Positives = 15/46 (32%)
Query: 99 WKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144
I + +L E S L++ I +L S I E
Sbjct: 175 NLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEF 220
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 163
Score = 27.7 bits (60), Expect = 0.75
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 38 IPTAIREKIREKLKQYGSH 56
+P + +++K +Q GSH
Sbjct: 145 VPPEVELALQQKFRQGGSH 163
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 156
Score = 27.6 bits (60), Expect = 0.86
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 2 LSKKLQRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILH 59
L+++L+ +L +G A G L++M P E++R L Y ++H
Sbjct: 99 LAERLREKGVTYLD--APVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YAKKVVH 153
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 27.5 bits (60), Expect = 1.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 27 ALTGQLSIMPEIPTAIREKIREKLKQYGSHILH 59
A+ G LS+M AI +K + +K ++H
Sbjct: 127 AIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVH 159
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 27.1 bits (59), Expect = 1.2
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 1 MLSKKLQRYKKRFL--PIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHIL 58
+ + L P+ G G A G L+ M EK R + G +I
Sbjct: 104 KIHAAARERGLAMLDAPVSGGTAG----AAAGTLTFMVGGDAEALEKARPLFEAMGRNIF 159
Query: 59 H 59
H
Sbjct: 160 H 160
>d1zl0a1 c.8.10.1 (A:170-307) LD-carboxypeptidase A, C-terminal
domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 138
Score = 26.8 bits (59), Expect = 1.4
Identities = 12/74 (16%), Positives = 24/74 (32%)
Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGV 164
A I++L + R+ R Q+LES ++ ++ + + A +
Sbjct: 34 LGGLHAPAGSILVLEDVGEPYYRLERSLWQLLESIDARQLGAICLGSFTDCPRKEVAHSL 93
Query: 165 RDIIALLKGEINYD 178
I I
Sbjct: 94 ERIFGEYAAAIEVP 107
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 26.4 bits (56), Expect = 2.1
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 64 SLDSIVARQIHPSDGQRIA 82
S+ S A P DG IA
Sbjct: 1 SIPSKFAEDFSPLDGDLIA 19
>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
Length = 484
Score = 26.0 bits (57), Expect = 2.6
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 71 RQIHPSDGQRIARALEIKL 89
+ P+ G R+A + L
Sbjct: 454 YKEDPNYGTRVAEVAKGDL 472
>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
1351]}
Length = 474
Score = 25.2 bits (55), Expect = 3.9
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 71 RQIHPSDGQRIARALEIK 88
+++P G R+A+A++ +
Sbjct: 457 TRVNPEYGARVAQAIKQQ 474
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 25.4 bits (56), Expect = 4.4
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 22 GLYFRALTGQLSIMPEIPTAIREKIREKLKQYG 54
FR Q I+ +P + + KI + K+ G
Sbjct: 42 KGDFRITANQNLIIAGVPESEKAKIEKIAKESG 74
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX,
catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 255
Score = 25.3 bits (55), Expect = 4.5
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 41 AIREKIREKLKQYGSHILHDELSSL 65
IR+ + E++K Y + D+L ++
Sbjct: 211 GIRDVVIEEIKDYVDEVKVDKLGNV 235
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 289
Score = 25.0 bits (53), Expect = 4.9
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 99 WKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144
F I + + S K+ + + E+G ++++
Sbjct: 235 LVTTGELFFRSGFG---IGMRKDSPWKQNVSLSILKSHENGFMEDL 277
>d1e85a_ a.24.3.2 (A:) Cytochrome c' {Alcaligenes sp. [TaxId: 512]}
Length = 125
Score = 24.9 bits (54), Expect = 5.1
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 9/40 (22%)
Query: 140 AIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDE 179
A+ +S + + S + ++KG+ YD
Sbjct: 8 AVKYRQSALTLMASH----FGRMT-----PVVKGQAPYDA 38
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand
binding core {Rat (Rattus norvegicus), GluR5 [TaxId:
10116]}
Length = 246
Score = 24.8 bits (52), Expect = 5.5
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 116 IILPERSALKERIRRRFTQMLESGAIDEI 144
+ P S +++I Q+ E G + +
Sbjct: 212 VGTPIGSPYRDKITIAILQLQEEGKLHMM 240
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 24.9 bits (54), Expect = 5.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 71 RQIHPSDGQRIARALEIKL 89
I + Q +A+ L I+L
Sbjct: 522 AHIDLTLAQAVAKNLGIEL 540
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
10116]}
Length = 277
Score = 24.6 bits (52), Expect = 6.0
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 116 IILPERSALKERIRRRFTQMLESGAIDEI 144
I L + S K +I Q + G ++E+
Sbjct: 239 IALQKGSPWKRQIDLALLQFVGDGEMEEL 267
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 59
Score = 24.5 bits (54), Expect = 7.6
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 36 PEIPTAIREKIREKLK 51
PE+ IR+++ ++
Sbjct: 44 PEMEQEIRDRVMAAIR 59
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
(Rattus norvegicus), GluR2 [TaxId: 10116]}
Length = 260
Score = 24.2 bits (51), Expect = 8.0
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 108 PLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144
L+S I P+ S+L + ++ E G +D++
Sbjct: 212 NLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKL 248
>d2a8ea1 d.296.1.1 (A:2-211) Hypothetical protein YktB {Bacillus
subtilis [TaxId: 1423]}
Length = 210
Score = 24.4 bits (53), Expect = 8.8
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 41 AIREKIREKLKQYGSHILHDELSSL 65
++E +R KL G H LS+L
Sbjct: 24 VLKETVRPKLTALGEHFA-PTLSAL 47
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
Length = 491
Score = 24.1 bits (52), Expect = 9.1
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 71 RQIHPSDGQRIARALE 86
++ P + + +ALE
Sbjct: 469 KKADPKYAEGVKKALE 484
>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania
mexicana [TaxId: 5665]}
Length = 561
Score = 24.1 bits (51), Expect = 9.8
Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 3/95 (3%)
Query: 113 HKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLK 172
H + + ++E D + + ++ L +M +IG + + L
Sbjct: 251 HFVALSTNTEKVREFGIDTVNMF---AFWDWVGGRYSVWSAIGLSVMLSIGYDNFVEFLT 307
Query: 173 GEINYDETLQRGIIATNKYAKRQKTWLCHQFQADW 207
G D N + +
Sbjct: 308 GAHVMDNHFASTPTEQNLPMMLALVGIWYNNFFGS 342
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.399
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 858,395
Number of extensions: 41427
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 34
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.1 bits)