Query 537021.9.peg.889_1
Match_columns 42
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 01:45:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_889.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uj2_A Uridine-cytidine kinase 4.8 1.3E+02 0.0054 13.1 0.0 16 19-34 236-251 (252)
2 3cjl_A Domain of unknown funct 4.6 1.8E+02 0.0074 12.5 0.6 13 13-25 60-72 (88)
3 2k21_A Potassium voltage-gated 3.7 2.3E+02 0.0096 11.9 0.6 16 16-31 98-113 (138)
4 2i6h_A AGR_C_189P, hypothetica 3.4 2E+02 0.0084 12.2 0.1 16 20-35 126-141 (207)
5 2fot_C Alpha-II spectrin spect 2.8 3.2E+02 0.014 11.2 1.6 15 5-19 28-42 (42)
6 1wi9_A Protein C20ORF116 homol 2.7 3.3E+02 0.014 11.1 0.6 11 12-22 12-22 (72)
7 2v1y_A Phosphatidylinositol-4, 2.7 65 0.0027 14.6 -3.1 12 18-29 53-64 (108)
8 3e20_C Eukaryotic peptide chai 2.6 3E+02 0.012 11.4 0.2 21 8-28 7-27 (441)
9 2wuj_A Septum site-determining 2.4 90 0.0038 13.9 -2.7 24 9-34 1-24 (57)
10 2izv_A Suppressor of cytokine 2.4 3.7E+02 0.015 10.9 0.8 6 32-37 138-143 (187)
No 1
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=4.82 E-value=1.3e+02 Score=13.15 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHCCHH
Q ss_conf 4143999984330089
Q 537021.9.peg.8 19 RKYPLKRLLEGYMPLQ 34 (42)
Q Consensus 19 rkyplkrllegymplq 34 (42)
-+.+..+.+.||||-.
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (252)
T 1uj2_A 236 SKRQTNGCLNGYTPSR 251 (252)
T ss_dssp ----------------
T ss_pred CCCHHCCCCCCCCCCC
T ss_conf 4001010112458788
No 2
>3cjl_A Domain of unknown function; YP_050007.1, structural genomics, joint center for structural genomics, JCSG; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=4.64 E-value=1.8e+02 Score=12.47 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=8.9
Q ss_pred HHHHHCCCCHHHH
Q ss_conf 9864224143999
Q 537021.9.peg.8 13 VNHIKNRKYPLKR 25 (42)
Q Consensus 13 vnhiknrkyplkr 25 (42)
---++|||.||=.
T Consensus 60 evMl~~R~~PLF~ 72 (88)
T 3cjl_A 60 EVMMQQRKHPLFK 72 (88)
T ss_dssp HHHHHTTTSHHHH
T ss_pred HHHHHCCCCCCHH
T ss_conf 9998657884078
No 3
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=3.74 E-value=2.3e+02 Score=11.91 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=11.5
Q ss_pred HHCCCCHHHHHHHHHC
Q ss_conf 4224143999984330
Q 537021.9.peg.8 16 IKNRKYPLKRLLEGYM 31 (42)
Q Consensus 16 iknrkyplkrllegym 31 (42)
-|+|.|-..|+||.|-
T Consensus 98 ~K~k~~~q~r~le~~k 113 (138)
T 2k21_A 98 EKDKAYVQARVLESYK 113 (138)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 8779999998752566
No 4
>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics, APC5905, PSI-2, protein structure initiative; 1.75A {Agrobacterium tumefaciens str} SCOP: a.118.8.5
Probab=3.42 E-value=2e+02 Score=12.19 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHCCHHH
Q ss_conf 1439999843300898
Q 537021.9.peg.8 20 KYPLKRLLEGYMPLQH 35 (42)
Q Consensus 20 kyplkrllegymplqh 35 (42)
+++.-.-.=-||||.|
T Consensus 126 ~l~~~~r~F~ymPlmH 141 (207)
T 2i6h_A 126 AVSEDLRVFFYLPFSH 141 (207)
T ss_dssp HSCHHHHGGGTHHHHT
T ss_pred CCCHHHHHHHCCCHHH
T ss_conf 2479999986672210
No 5
>2fot_C Alpha-II spectrin spectrin; calmodulin, calmodulin binding domain, metal binding, structural protein; 2.45A {Homo sapiens}
Probab=2.81 E-value=3.2e+02 Score=11.17 Aligned_cols=15 Identities=47% Similarity=0.689 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999864224
Q 537021.9.peg.8 5 YLVHMMLTVNHIKNR 19 (42)
Q Consensus 5 ylvhmmltvnhiknr 19 (42)
..|+-.-+.|.||.|
T Consensus 28 lav~t~a~fnsik~r 42 (42)
T 2fot_C 28 LMVHTVATFNSIKER 42 (42)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 999987402301149
No 6
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=2.73 E-value=3.3e+02 Score=11.13 Aligned_cols=11 Identities=36% Similarity=0.322 Sum_probs=8.0
Q ss_pred HHHHHHCCCCH
Q ss_conf 99864224143
Q 537021.9.peg.8 12 TVNHIKNRKYP 22 (42)
Q Consensus 12 tvnhiknrkyp 22 (42)
-+|+||.+|.-
T Consensus 12 FI~~Ik~~Kvv 22 (72)
T 1wi9_A 12 FINYIKKSKVV 22 (72)
T ss_dssp HHHHHHHCSEE
T ss_pred HHHHHHHCCEE
T ss_conf 99999987876
No 7
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogenic mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=2.67 E-value=65 Score=14.58 Aligned_cols=12 Identities=58% Similarity=1.079 Sum_probs=7.5
Q ss_pred CCCCHHHHHHHH
Q ss_conf 241439999843
Q 537021.9.peg.8 18 NRKYPLKRLLEG 29 (42)
Q Consensus 18 nrkyplkrlleg 29 (42)
.++|||..+|..
T Consensus 53 A~~~PL~~~L~d 64 (108)
T 2v1y_A 53 ARKYPLHQLLQD 64 (108)
T ss_dssp GGGSTTGGGCCC
T ss_pred HHHCCHHHHHCC
T ss_conf 986977887579
No 8
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, cytoplasm, GTP-binding; 3.50A {Schizosaccharomyces pombe}
Probab=2.57 E-value=3e+02 Score=11.35 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHH
Q ss_conf 999999864224143999984
Q 537021.9.peg.8 8 HMMLTVNHIKNRKYPLKRLLE 28 (42)
Q Consensus 8 hmmltvnhiknrkyplkrlle 28 (42)
|||-....-.-.+|-+|++++
T Consensus 7 ~~m~~~~~~~~~~~~~k~~l~ 27 (441)
T 3e20_C 7 HMMSETAEKAIEIWKIRRLVK 27 (441)
T ss_dssp -----CHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHH
T ss_conf 440312788999999999999
No 9
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=2.42 E-value=90 Score=13.90 Aligned_cols=24 Identities=33% Similarity=0.539 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHCCHH
Q ss_conf 99999864224143999984330089
Q 537021.9.peg.8 9 MMLTVNHIKNRKYPLKRLLEGYMPLQ 34 (42)
Q Consensus 9 mmltvnhiknrkyplkrllegymplq 34 (42)
|-||..-|.|..+ ++-+.||-|-+
T Consensus 1 M~lTp~dI~~k~F--~~~~rGY~~~E 24 (57)
T 2wuj_A 1 MPLTPNDIHNKTF--TKSFRGYDEDE 24 (57)
T ss_dssp --CCHHHHTTCCC--CEETTEEEHHH
T ss_pred CCCCHHHHHHCCC--CCCCCCCCHHH
T ss_conf 9999999965737--78779989999
No 10
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Probab=2.40 E-value=3.7e+02 Score=10.90 Aligned_cols=6 Identities=67% Similarity=1.503 Sum_probs=0.0
Q ss_pred CHHHHH
Q ss_conf 089885
Q 537021.9.peg.8 32 PLQHMC 37 (42)
Q Consensus 32 plqhmc 37 (42)
.|||+|
T Consensus 138 sLqhLc 143 (187)
T 2izv_A 138 SLQHIC 143 (187)
T ss_dssp CHHHHH
T ss_pred CHHHHH
T ss_conf 477773
Done!