RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.889_1
         (42 letters)



>gnl|CDD|36217 KOG0999, KOG0999, KOG0999, Microtubule-associated protein
           Bicaudal-D [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 772

 Score = 24.3 bits (52), Expect = 7.7
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 10  MLTVNHIKNRKYPLKRLLEGYMPLQHM 36
           + T+   + +K  LK+ L  Y   + +
Sbjct: 235 LETLQQEREQKNALKKELSQYRNAEDI 261


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.333    0.144    0.459 

Gapped
Lambda     K      H
   0.267   0.0775    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 532,084
Number of extensions: 15745
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 42
Length of database: 6,263,737
Length adjustment: 16
Effective length of query: 26
Effective length of database: 5,917,993
Effective search space: 153867818
Effective search space used: 153867818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.3 bits)