RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.905_1
         (56 letters)



>gnl|CDD|114878 pfam06185, YecM, YecM protein.  This family consists of several
           bacterial YecM proteins of unknown function.
          Length = 186

 Score = 24.3 bits (53), Expect = 6.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 19  HIESIMASLRKEEYEKMKEVRKSYNSFLKHKASLGIKV 56
           HIE ++ SL +    ++K +    N      + LGIKV
Sbjct: 109 HIEIVLPSLPQTLNAELKALYPRLNPSFLGLSLLGIKV 146


>gnl|CDD|152489 pfam12054, DUF3535, Domain of unknown function (DUF3535).  This
           presumed domain is functionally uncharacterized. This
           domain is found in eukaryotes. This domain is typically
           between 439 to 459 amino acids in length. This domain is
           found associated with pfam00271, pfam02985, pfam00176.
           This domain has two completely conserved residues (P and
           K) that may be functionally important.
          Length = 442

 Score = 23.8 bits (52), Expect = 9.8
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query: 20  IESIMASLRKEEYEKM 35
           I+ +M S+++EE E++
Sbjct: 314 IKPLMDSIKREENEEL 329


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.136    0.365 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 884,417
Number of extensions: 39382
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 20
Length of query: 56
Length of database: 5,994,473
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,389,449
Effective search space: 150904572
Effective search space used: 150904572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)