RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.905_1
         (56 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 30.9 bits (69), Expect = 0.064
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 14  VEYVKHIESIMASLRKEEYEKMKEVRK--SYNSFLKHKASLG 53
           +++V  ++   A LRKE  E   EVRK  S  + L+HK   G
Sbjct: 731 LQFVPELKEFTAKLRKELVE-TSEVRKAVSIETALEHKVVNG 771


>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo
           sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
          Length = 188

 Score = 28.6 bits (63), Expect = 0.33
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 2   IIIDGLGVHGVDVEYVKHIESIMASLRKEEY 32
           II  G   +G+ +EY + +++I  +    + 
Sbjct: 142 IICMGAKENGLPLEYQEKLKAIEPNDYTGKV 172


>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
           HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
           c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
           1mx9_A* 2hrq_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
           1k4y_A*
          Length = 542

 Score = 26.2 bits (56), Expect = 1.7
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 8   GVHGVDVEYVKHIESIMASLRKEEYEKMKEVRKSYNSFLKH 48
           G HG ++  V     +     +EE    K V K + +F ++
Sbjct: 447 GDHGDELFSVFGAPFLKEGASEEEIRLSKMVMKFWANFARN 487


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.136    0.365 

Gapped
Lambda     K      H
   0.267   0.0471    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 479,857
Number of extensions: 15938
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 11
Length of query: 56
Length of database: 5,693,230
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,014,398
Effective search space: 140403144
Effective search space used: 140403144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.7 bits)