RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.91_1
         (46 letters)



>gnl|CDD|171118 PRK11449, PRK11449, putative deoxyribonuclease YjjV; Provisional.
          Length = 258

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 2  LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIA 37
           I+THCHF  P F  D    + RA QA V K+I  A
Sbjct: 5  FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPA 40


>gnl|CDD|161662 TIGR00010, TIGR00010, hydrolase, TatD family.  Several genomes
          have multiple paralogs related to this family. However,
          a set of 17 proteins can be found, one each from 17 of
          the first 20 genomes, such that each member forms a
          bidirectional best hit across genomes with all other
          members of the set. This core set (and one other
          near-perfect member), but not the other paralogs, form
          the seed for this model. Additionally, members of the
          seed alignment and all trusted hits, but not all
          paralogs, have a conserved motif DxHxH near the amino
          end. The member from E. coli was recently shown to have
          DNase activity.
          Length = 252

 Score = 34.5 bits (80), Expect = 0.006
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 2  LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIA 37
          LI+ HCH    DF+ED   VI RA  A V  ++A+ 
Sbjct: 1  LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVG 36


>gnl|CDD|182449 PRK10425, PRK10425, DNase TatD; Provisional.
          Length = 258

 Score = 27.3 bits (61), Expect = 0.97
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 12 PDFDEDRHNVIMRAHQANVLKMI 34
            F +DR +V+ RA  A V  M+
Sbjct: 11 SQFAKDRDDVVARAFAAGVNGML 33


>gnl|CDD|178630 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing
           protein; Provisional.
          Length = 697

 Score = 25.6 bits (56), Expect = 3.3
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 9   FLLPDFDEDRHNVIMRAHQANVLKMIAIAIKVIRT 43
            LLPD DED   V  R H     + +AIA  +I T
Sbjct: 612 ELLPDVDEDEEKVSGRYHS----EKLAIAFGLINT 642


>gnl|CDD|177890 PLN02248, PLN02248, cellulose synthase-like protein.
          Length = 1135

 Score = 24.6 bits (54), Expect = 6.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 30   VLKMIAIAIKVIRTLF 45
            ++ +IAIA+ V RT++
Sbjct: 1045 MVNLIAIAVGVSRTIY 1060


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.338    0.145    0.442 

Gapped
Lambda     K      H
   0.267   0.0756    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 733,106
Number of extensions: 27739
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 9
Length of query: 46
Length of database: 5,994,473
Length adjustment: 19
Effective length of query: 27
Effective length of database: 5,583,921
Effective search space: 150765867
Effective search space used: 150765867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.0 bits)