RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= 537021.9.peg.91_1
(46 letters)
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} (A:)
Length = 264
Score = 38.1 bits (87), Expect = 4e-04
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
+ + + F +DR +V+ A A V ++
Sbjct: 4 RMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGT 41
>1j6o_A TATD-related deoxyribonuclease; structural genomics,
TM0667, JCSG, PSI, protein structure initiative, joint
center for structural genomics; 1.80A {Thermotoga
maritima} (A:)
Length = 268
Score = 37.3 bits (85), Expect = 7e-04
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
++TH H FD+DR+ VI + N+ ++ + +
Sbjct: 12 HXVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGV 49
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole
complex, amido hydrolase, structural genomics, PSI-2;
HET: KCX; 2.62A {Agrobacterium tumefaciens str}
(A:73-340)
Length = 268
Score = 36.9 bits (84), Expect = 0.001
Identities = 3/37 (8%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
++ H H + + + V ++
Sbjct: 1 WVDLHVH-IWHGGTDISIRPSECGAERGVTTLVDAGS 36
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG,
ZR237, structural genomics, PSI, protein structure
initiative; 2.20A {Staphylococcus aureus subsp} (A:)
Length = 265
Score = 35.8 bits (81), Expect = 0.002
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
LI+TH H +D+D VI RA +A V + +
Sbjct: 2 LIDTHVHLNDEQYDDDLSEVITRAREAGVDRXFVVGF 38
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG,
structural genomics, PSI; HET: P33; 1.80A {Escherichia
coli} (A:)
Length = 259
Score = 34.3 bits (77), Expect = 0.006
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
I+THCHF P F D + RA QA V K+I A
Sbjct: 5 FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPAT 41
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle
structural genomics center for infectious disease,
dysentery, liver abcess; 1.95A {Entamoeba histolytica
hm-1} (A:)
Length = 325
Score = 33.8 bits (76), Expect = 0.009
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 10/48 (20%)
Query: 1 MLINTHCHFLLPDF----------DEDRHNVIMRAHQANVLKMIAIAI 38
I+ + ++ +ED V+ RA + + +I +
Sbjct: 27 QFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSG 74
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2,
protein structure initiative; 1.50A {Saccharomyces
cerevisiae YJM789} (A:)
Length = 401
Score = 33.0 bits (74), Expect = 0.015
Identities = 1/37 (2%), Positives = 3/37 (8%)
Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIA 37
+ L +
Sbjct: 68 AIELVSSVKDLSPLKLYHTIGVHPCCVNEFADASQGD 104
Score = 29.9 bits (66), Expect = 0.11
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 10/47 (21%)
Query: 2 LINTHCHFLLPDF----------DEDRHNVIMRAHQANVLKMIAIAI 38
+ + P F D ++ RA Q +V +
Sbjct: 14 YYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGS 60
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX
research center for structural genomics, NYSGXRC,
structural genomics, PSI; 1.90A {Escherichia coli K12}
(A:)
Length = 265
Score = 32.3 bits (72), Expect = 0.023
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 1 MLINTHCHFLLPDFD---EDRHNVIMRAHQANVLKMIAIAIKV 40
L+++HCH D++ +D +V+ +A +V +A+A +
Sbjct: 2 FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTL 44
>3gg7_A Uncharacterized metalloprotein; structural genomics,
unknown function, plasmid, PSI-2, protein structure
initiative; 1.50A {Deinococcus radiodurans} (A:)
Length = 254
Score = 31.4 bits (70), Expect = 0.041
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
LI+ H H L + RA + L ++++
Sbjct: 2 SLIDFHVHLDLYPDPV----AVARACEERQLTVLSVTT 35
>2qpx_A Predicted metal-dependent hydrolase of the TIM- barrel fold;
YP_805737.1, putative metal-dependent hydrolase,
structural genomics; HET: KCX MSE; 1.40A {Lactobacillus
casei atcc 334} (A:)
Length = 376
Score = 29.2 bits (64), Expect = 0.18
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIA 37
+LI+T P D D+ ++ + ++ A
Sbjct: 98 LLIDTGFVPDDPILDLDQTAELVGIPVKAIYRLETHA 134
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri} (A:63-324)
Length = 262
Score = 28.8 bits (63), Expect = 0.28
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 2 LINTHCHFLLPDFDEDR--HNVIMRAHQANVLKMIAIAI 38
L++TH H D+ + + I A V MI+
Sbjct: 1 LLDTHVHVSGGDYAPRQKTMDFISSALHGGVTTMISAGS 39
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related
protein; TIM barrel, binuclear zinc, protein structure
initiative II (PSI II); 1.80A {Rhodobacter sphaeroides
2} (A:)
Length = 364
Score = 27.7 bits (60), Expect = 0.60
Identities = 1/40 (2%), Positives = 9/40 (22%), Gaps = 2/40 (5%)
Query: 1 MLINTHCHFLLPDFDEDR--HNVIMRAHQANVLKMIAIAI 38
+ + + D+ + + ++
Sbjct: 69 LRQDPFVNKHNIALDDLDLAIAEVKQFAAVGGRSIVDPTC 108
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase,
alpha-beta barrel; HET: KCX; 1.62A {Deinococcus
radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A*
3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* (A:)
Length = 339
Score = 26.2 bits (56), Expect = 1.4
Identities = 2/38 (5%), Positives = 5/38 (13%)
Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
T F + ++
Sbjct: 48 AGDVTLGPFDHAAALASCTETARALLARGIQTVVDATP 85
>3f4c_A Organophosphorus hydrolase; alpha-beta barrel,
amidohydrolase, binuclear metal enzyme, glycerol-bound;
HET: KCX; 2.07A {Geobacillus stearothermophilus 10}
PDB: 3f4d_A* (A:)
Length = 332
Score = 25.9 bits (55), Expect = 2.0
Identities = 4/53 (7%), Positives = 10/53 (18%), Gaps = 16/53 (30%)
Query: 2 LINTHCHFLL----------------PDFDEDRHNVIMRAHQANVLKMIAIAI 38
H HFL + + + + ++
Sbjct: 19 KTLIHEHFLFGYPGFQGDVTRGTFREDEALRVAVEAAEKMKRHGIQTVVDPTP 71
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; 3.20A {Archaeoglobus fulgidus dsm 4304}
(A:)
Length = 261
Score = 25.7 bits (55), Expect = 2.4
Identities = 4/36 (11%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
++H H F +++ + + ++ ++A
Sbjct: 3 FDSHLHSEGLGFS-----ELVKLKENGIKEVCSLAF 33
>2qah_A 2-pyrone-4,6-dicarboxylic acid hydrolase; structural
genomics, PSI-2, protein structure initiative; 2.00A
{Sphingomonas paucimobilis} (A:)
Length = 303
Score = 25.0 bits (53), Expect = 3.5
Identities = 6/50 (12%), Positives = 11/50 (22%), Gaps = 13/50 (26%)
Query: 2 LINTHCHFLLPDF-------------DEDRHNVIMRAHQANVLKMIAIAI 38
I+ HCH P D + + + +
Sbjct: 27 AIDAHCHVFGPMAQFPFSPKAKYLPRDAGPDMLFALRDHLGFARNVIVQA 76
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putative;
TIM-barrel protein., structural genomics, PSI, protein
structure initiative; 2.61A {Pseudomonas putida KT2440}
(A:)
Length = 288
Score = 25.1 bits (53), Expect = 3.6
Identities = 4/48 (8%), Positives = 11/48 (22%), Gaps = 12/48 (25%)
Query: 2 LINTHCHFLLPDF------------DEDRHNVIMRAHQANVLKMIAIA 37
I++H H D + + + + +
Sbjct: 14 AIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQ 61
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.338 0.145 0.442
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 353,668
Number of extensions: 9224
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 26
Length of query: 46
Length of database: 4,956,049
Length adjustment: 18
Effective length of query: 28
Effective length of database: 4,347,559
Effective search space: 121731652
Effective search space used: 121731652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.9 bits)