Query 537021.9.peg.911_1
Match_columns 47
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 04:06:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_911.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2kix_A BM2 protein; channel, 27.1 33 0.00098 16.5 1.7 14 23-36 8-21 (33)
2 >3enb_A PRE-mRNA-processing-sp 18.5 60 0.0018 15.3 1.6 17 22-38 8-24 (66)
3 >3e9o_A PRE-mRNA-splicing fact 13.2 1E+02 0.0029 14.3 1.6 17 22-38 8-24 (91)
4 >3e66_A PRP8; beta-finger, RNA 13.2 1E+02 0.003 14.3 1.6 17 22-38 8-24 (99)
5 >3e9l_A PRE-mRNA-processing-sp 11.7 1.2E+02 0.0036 13.9 1.7 16 22-37 8-23 (92)
6 >1kd8_B GABH BLL, GCN4 acid ba 5.4 1.4E+02 0.0043 13.5 -0.2 10 31-40 16-25 (36)
7 >2wa0_A Melanoma-associated an 5.1 2.8E+02 0.0082 12.2 1.8 17 21-37 8-24 (127)
8 >3c8x_A Ephrin type-A receptor 3.3 2.9E+02 0.0085 12.2 -0.0 15 11-25 92-106 (206)
9 >3exn_A Probable acetyltransfe 3.2 4.1E+02 0.012 11.4 2.8 20 2-21 108-127 (160)
10 >3etp_A Ephrin type-B receptor 3.0 3.2E+02 0.0096 11.9 -0.0 16 10-25 67-82 (187)
No 1
>>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus} (A:)
Probab=27.13 E-value=33 Score=16.53 Aligned_cols=14 Identities=57% Similarity=0.615 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 47989999976330
Q 537021.9.peg.9 23 YSILFLILSALHLK 36 (47)
Q Consensus 23 ysilflilsalhlk 36 (47)
.||--.||||||.-
T Consensus 8 lsi~sfilsalhf~ 21 (33)
T 2kix_A 8 LSISSFILSALHFI 21 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 2
>>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, disease mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} (A:157-222)
Probab=18.51 E-value=60 Score=15.31 Aligned_cols=17 Identities=53% Similarity=0.796 Sum_probs=13.7
Q ss_pred EHHHHHHHHHHHHHCCC
Q ss_conf 04798999997633010
Q 537021.9.peg.9 22 KYSILFLILSALHLKNK 38 (47)
Q Consensus 22 kysilflilsalhlknk 38 (47)
-+|-|.|||-|||..+.
T Consensus 8 AFsRLiLiLRalhvn~~ 24 (66)
T 3enb_A 8 AFSRLILILRALHVNND 24 (66)
T ss_dssp HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHCCCHH
T ss_conf 99999999988236867
No 3
>>3e9o_A PRE-mRNA-splicing factor 8; nucleotidyl transfer, mRNA processing, nucleus, phosphoprotein, RNA-binding, spliceosome; HET: MSE; 2.00A {Saccharomyces cerevisiae} (A:168-258)
Probab=13.24 E-value=1e+02 Score=14.30 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=13.4
Q ss_pred EHHHHHHHHHHHHHCCC
Q ss_conf 04798999997633010
Q 537021.9.peg.9 22 KYSILFLILSALHLKNK 38 (47)
Q Consensus 22 kysilflilsalhlknk 38 (47)
.+|-|.|||-|||..+.
T Consensus 8 AFsRLiLiLRalhvn~~ 24 (91)
T 3e9o_A 8 AFSRLTLLLRALKTNEE 24 (91)
T ss_dssp HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHCCCCHH
T ss_conf 99999999974245866
No 4
>>3e66_A PRP8; beta-finger, RNAse H fold, mRNA processing, mRNA splicing, nucleus, RNA-binding protein, spliceosome, spliceosomal protein; 2.05A {Saccharomyces cerevisiae} (A:184-282)
Probab=13.20 E-value=1e+02 Score=14.29 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=13.4
Q ss_pred EHHHHHHHHHHHHHCCC
Q ss_conf 04798999997633010
Q 537021.9.peg.9 22 KYSILFLILSALHLKNK 38 (47)
Q Consensus 22 kysilflilsalhlknk 38 (47)
-+|-|.|||-|||..+.
T Consensus 8 AFsRLiLiLRalhvn~~ 24 (99)
T 3e66_A 8 AFSRLTLLLRALKTNEE 24 (99)
T ss_dssp HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHCCCCHH
T ss_conf 99999999974245867
No 5
>>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, mRNA splicing, nucleus, phosphoprotein, polymorphism; 1.95A {Homo sapiens} (A:166-257)
Probab=11.66 E-value=1.2e+02 Score=13.87 Aligned_cols=16 Identities=56% Similarity=0.835 Sum_probs=13.3
Q ss_pred EHHHHHHHHHHHHHCC
Q ss_conf 0479899999763301
Q 537021.9.peg.9 22 KYSILFLILSALHLKN 37 (47)
Q Consensus 22 kysilflilsalhlkn 37 (47)
-+|-|.|||-|||..+
T Consensus 8 AFsRLiLiLRalhvn~ 23 (92)
T 3e9l_A 8 AFSRLILILRALHVNN 23 (92)
T ss_dssp HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHCCCH
T ss_conf 9999999998851784
No 6
>>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} (B:)
Probab=5.38 E-value=1.4e+02 Score=13.54 Aligned_cols=10 Identities=60% Similarity=0.707 Sum_probs=6.9
Q ss_pred HHHHHCCCCC
Q ss_conf 9763301000
Q 537021.9.peg.9 31 SALHLKNKVR 40 (47)
Q Consensus 31 salhlknkvr 40 (47)
.-.||||||.
T Consensus 16 klwhlknkva 25 (36)
T 1kd8_B 16 KLWHLKNKVA 25 (36)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 7
>>2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous dispersion, cancer/testis antigen 1.4, melanoma antigen family A 4, CT1.4, MAGE-41; 2.30A {Homo sapiens} (A:114-240)
Probab=5.09 E-value=2.8e+02 Score=12.22 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=13.7
Q ss_pred EEHHHHHHHHHHHHHCC
Q ss_conf 50479899999763301
Q 537021.9.peg.9 21 VKYSILFLILSALHLKN 37 (47)
Q Consensus 21 vkysilflilsalhlkn 37 (47)
.|..+|++|||-..+++
T Consensus 8 pk~Gll~~VL~~I~l~g 24 (127)
T 2wa0_A 8 PKTGLLIIVLGTIAMEG 24 (127)
T ss_dssp CCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHCC
T ss_conf 51127999999999659
No 8
>>3c8x_A Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, signal, transferase, phosphorylation, transmembrane, tyrosine- protein kinase; 1.95A {Homo sapiens} PDB: 3czu_A* 3hei_A 3hpn_A (A:)
Probab=3.27 E-value=2.9e+02 Score=12.16 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=9.6
Q ss_pred HCCCCEEEEEEEHHH
Q ss_conf 146645889850479
Q 537021.9.peg.9 11 AKGANRIRLKVKYSI 25 (47)
Q Consensus 11 akganrirlkvkysi 25 (47)
.+||+||-..+++++
T Consensus 92 r~~A~RiyVel~Fti 106 (206)
T 3c8x_A 92 RGEAERIFIELKFTV 106 (206)
T ss_dssp CTTCSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEEE
T ss_conf 688349999999998
No 9
>>3exn_A Probable acetyltransferase; GCN5-related N-acetyltransferase, MCSG, PSI, structural genomics, protein structure initiative; HET: ACO; 1.80A {Thermus thermophilus HB8} (A:)
Probab=3.25 E-value=4.1e+02 Score=11.44 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCEEEEEE
Q ss_conf 07998998514664588985
Q 537021.9.peg.9 2 EIVSQVERYAKGANRIRLKV 21 (47)
Q Consensus 2 eivsqveryakganrirlkv 21 (47)
+++..++.+++|.+++.+.|
T Consensus 108 ~ll~~~~~~~~~~~~i~l~v 127 (160)
T 3exn_A 108 QALERFAAGLDGVRRLYAVV 127 (160)
T ss_dssp HHHHHHHHTCTTCCEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEE
T ss_conf 99999998761898048998
No 10
>>3etp_A Ephrin type-B receptor 2; EPH receptor, tyrosine kinase, alternative splicing, ATP- binding, glycoprotein, kinase, membrane, nucleotide- binding; 2.00A {Mus musculus} PDB: 1nuk_A 1kgy_A 1shw_B* (A:)
Probab=2.96 E-value=3.2e+02 Score=11.90 Aligned_cols=16 Identities=38% Similarity=0.791 Sum_probs=0.0
Q ss_pred HHCCCCEEEEEEEHHH
Q ss_conf 5146645889850479
Q 537021.9.peg.9 10 YAKGANRIRLKVKYSI 25 (47)
Q Consensus 10 yakganrirlkvkysi 25 (47)
+.+||+||-..+++++
T Consensus 67 ~r~~A~RiyVEl~Ftv 82 (187)
T 3etp_A 67 RRRGAHRIHVEMKFSV 82 (187)
T ss_dssp ECTTCSSEEEEEEEEE
T ss_pred ECCCCEEEEEEEEEEE
T ss_conf 1688349999999998
Done!