Query 537021.9.peg.911_1 Match_columns 47 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed May 25 02:45:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_911.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2dgxa1 d.58.7.1 (A:563-635) L 4.7 1.2E+02 0.0084 12.2 0.9 17 3-19 51-67 (73) 2 d1shwb_ b.18.1.4 (B:) Ligand-b 2.6 1.6E+02 0.012 11.5 -0.0 15 11-25 62-76 (181) 3 d2bbaa1 b.18.1.4 (A:17-196) Ep 2.4 1.7E+02 0.013 11.4 -0.0 15 11-25 64-78 (180) 4 d1zeta1 d.240.1.1 (A:300-414) 1.9 2.3E+02 0.017 10.7 0.0 16 9-24 35-50 (115) 5 d3enba1 c.55.3.14 (A:1771-1989 1.7 2.8E+02 0.02 10.4 1.7 16 22-37 162-177 (219) 6 d1fs1a1 a.158.1.1 (A:109-149) 1.7 2.6E+02 0.019 10.5 -0.0 23 23-45 6-28 (41) 7 d1j3ea_ d.228.1.1 (A:) Replica 1.4 3.3E+02 0.024 10.0 0.7 17 26-42 25-41 (115) 8 d1gyva_ b.1.10.2 (A:) Gamma1-a 1.3 3.5E+02 0.026 9.9 -0.1 11 14-24 89-99 (120) 9 d1s29a_ a.4.5.46 (A:) Lupus La 1.1 4.2E+02 0.031 9.5 0.6 14 2-15 13-26 (92) 10 d1ii2a1 c.91.1.1 (A:201-523) P 1.1 2.8E+02 0.02 10.4 -0.9 22 10-31 222-243 (323) No 1 >d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]} Probab=4.71 E-value=1.2e+02 Score=12.17 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=12.2 Q ss_pred HHHHHHHHHCCCCEEEE Q ss_conf 79989985146645889 Q 537021.9.peg.9 3 IVSQVERYAKGANRIRL 19 (47) Q Consensus 3 ivsqveryakganrirl 19 (47) ++||..|+--|..||.. T Consensus 51 ~v~~LhR~KiG~KRI~V 67 (73) T d2dgxa1 51 AVNSLHRYKIGSKKILV 67 (73) T ss_dssp HHHHHTTEEETTEEEEE T ss_pred HHHHHHHHHCCCEEEEE T ss_conf 99998787428707999 No 2 >d1shwb_ b.18.1.4 (B:) Ligand-binding domain of the ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Probab=2.56 E-value=1.6e+02 Score=11.53 Aligned_cols=15 Identities=40% Similarity=0.884 Sum_probs=11.3 Q ss_pred HCCCCEEEEEEEHHH Q ss_conf 146645889850479 Q 537021.9.peg.9 11 AKGANRIRLKVKYSI 25 (47) Q Consensus 11 akganrirlkvkysi 25 (47) ..||+||-..+++++ T Consensus 62 r~~A~RvyVEl~Ftv 76 (181) T d1shwb_ 62 RRGAHRIHVEMKFSV 76 (181) T ss_dssp CSSCSSEEEEEEEEE T ss_pred CCCCEEEEEEEEEEE T ss_conf 688449999999998 No 3 >d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo sapiens) [TaxId: 9606]} Probab=2.36 E-value=1.7e+02 Score=11.36 Aligned_cols=15 Identities=13% Similarity=0.518 Sum_probs=11.2 Q ss_pred HCCCCEEEEEEEHHH Q ss_conf 146645889850479 Q 537021.9.peg.9 11 AKGANRIRLKVKYSI 25 (47) Q Consensus 11 akganrirlkvkysi 25 (47) ..||+||-..+++++ T Consensus 64 r~~A~RiyVEl~Ftv 78 (180) T d2bbaa1 64 RRGAVHVYATLRFTM 78 (180) T ss_dssp CTTCSSEEEEEEEEE T ss_pred CCCCEEEEEEEEEEE T ss_conf 688559999999998 No 4 >d1zeta1 d.240.1.1 (A:300-414) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Probab=1.86 E-value=2.3e+02 Score=10.73 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=10.4 Q ss_pred HHHCCCCEEEEEEEHH Q ss_conf 8514664588985047 Q 537021.9.peg.9 9 RYAKGANRIRLKVKYS 24 (47) Q Consensus 9 ryakganrirlkvkys 24 (47) +-...+..|.+|+||+ T Consensus 35 ~~~~~~rtv~lkir~~ 50 (115) T d1zeta1 35 QDGRKPHTVRLIIRRY 50 (115) T ss_dssp TTTCCBCEEEECCCCS T ss_pred HCCCCCCEEEEEEECC T ss_conf 7498765799999879 No 5 >d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]} Probab=1.75 E-value=2.8e+02 Score=10.40 Aligned_cols=16 Identities=56% Similarity=0.835 Sum_probs=13.1 Q ss_pred EHHHHHHHHHHHHHCC Q ss_conf 0479899999763301 Q 537021.9.peg.9 22 KYSILFLILSALHLKN 37 (47) Q Consensus 22 kysilflilsalhlkn 37 (47) -+|-|.|||.++|..+ T Consensus 162 aFsRliLiLR~l~vn~ 177 (219) T d3enba1 162 AFSRLILILRALHVNN 177 (219) T ss_dssp HHHHHHHHHHHHHHCH T ss_pred HHHHHHHHHHHHCCCH T ss_conf 9999999998713598 No 6 >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Probab=1.67 E-value=2.6e+02 Score=10.51 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHHHCCCCCCCCEE Q ss_conf 47989999976330100001010 Q 537021.9.peg.9 23 YSILFLILSALHLKNKVRYGAVK 45 (47) Q Consensus 23 ysilflilsalhlknkvrygavk 45 (47) ..|+.-|++-|..+.-.|.+.|- T Consensus 6 ~eil~~If~~L~~~dl~~~~~Vc 28 (41) T d1fs1a1 6 DELLLGIFSCLCLPELLKVSGVC 28 (41) T ss_dssp HHHHHHHHTTSCGGGHHHHHTTC T ss_pred HHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999869999999999999 No 7 >d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=1.40 E-value=3.3e+02 Score=10.04 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=11.9 Q ss_pred HHHHHHHHHHCCCCCCC Q ss_conf 89999976330100001 Q 537021.9.peg.9 26 LFLILSALHLKNKVRYG 42 (47) Q Consensus 26 lflilsalhlknkvryg 42 (47) ..+|||+|+-.|...++ T Consensus 25 Fl~iLs~Ly~~~~~~F~ 41 (115) T d1j3ea_ 25 FMLLLSTLYSLDAQAFA 41 (115) T ss_dssp HHHHHHHHHHHCHHHHH T ss_pred HHHHHHHHHHHCHHHHH T ss_conf 99999999987989899 No 8 >d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Probab=1.28 E-value=3.5e+02 Score=9.90 Aligned_cols=11 Identities=36% Similarity=0.766 Sum_probs=5.6 Q ss_pred CCEEEEEEEHH Q ss_conf 64588985047 Q 537021.9.peg.9 14 ANRIRLKVKYS 24 (47) Q Consensus 14 anrirlkvkys 24 (47) .-|+|+|+.|. T Consensus 89 ~l~lr~klsY~ 99 (120) T d1gyva_ 89 QLRMRIKLTYN 99 (120) T ss_dssp CCCEEEEEEEE T ss_pred CEEEEEEEEEE T ss_conf 78999999999 No 9 >d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Probab=1.13 E-value=4.2e+02 Score=9.54 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=0.0 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 07998998514664 Q 537021.9.peg.9 2 EIVSQVERYAKGAN 15 (47) Q Consensus 2 eivsqveryakgan 15 (47) .|..|||-|---+| T Consensus 13 ~I~~QvEfYFSd~N 26 (92) T d1s29a_ 13 KLQKQVEFYFSDVN 26 (92) T ss_dssp HHHHHHHHHTSHHH T ss_pred HHHHHHHHHCCHHH T ss_conf 99999998726744 No 10 >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} Probab=1.12 E-value=2.8e+02 Score=10.36 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=0.0 Q ss_pred HHCCCCEEEEEEEHHHHHHHHH Q ss_conf 5146645889850479899999 Q 537021.9.peg.9 10 YAKGANRIRLKVKYSILFLILS 31 (47) Q Consensus 10 yakganrirlkvkysilflils 31 (47) |..|..||.|++.-.|+--|++ T Consensus 222 yg~g~~Ri~l~~TR~iI~ail~ 243 (323) T d1ii2a1 222 ADRGAKRMPLRVTRAIIDAIHD 243 (323) T ss_dssp GGGTCEECCHHHHHHHHHHHHS T ss_pred CCCCCCCCCHHHHHHHHHHHHH T ss_conf 6778750683888999999983 Done!