BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.911_1
         (47 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.911_1 
          Length = 47

 Score = 90.9 bits (224), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%)

Query: 1  LEIVSQVERYAKGANRIRLKVKYSILFLILSALHLKNKVRYGAVKKY 47
          LEIVSQVERYAKGANRIRLKVKYSILFLILSALHLKNKVRYGAVKKY
Sbjct: 1  LEIVSQVERYAKGANRIRLKVKYSILFLILSALHLKNKVRYGAVKKY 47


>gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 348

 Score = 29.3 bits (64), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 2   EIVSQVERYAKGANRIRLKVKYS 24
           + V Q E Y KGA+RIRL +K S
Sbjct: 314 KTVDQAETYTKGADRIRLGIKNS 336


>gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 144

 Score = 21.6 bits (44), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 6  QVERYAKGANRI 17
          QV++Y KG NR+
Sbjct: 43 QVQKYEKGVNRV 54


>gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
          Length = 160

 Score = 20.4 bits (41), Expect = 5.9,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 13/15 (86%)

Query: 21 VKYSILFLILSALHL 35
          ++YS +F+ILSA+ +
Sbjct: 1  MQYSTIFIILSAITM 15


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.140    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,033
Number of Sequences: 1233
Number of extensions: 634
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 47
length of database: 328,796
effective HSP length: 20
effective length of query: 27
effective length of database: 304,136
effective search space:  8211672
effective search space used:  8211672
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 31 (16.5 bits)