Query 537021.9.peg.912_1
Match_columns 47
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 03:19:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_912.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2zjr_Z 50S ribosomal protein 10.3 1E+02 0.0031 14.7 1.0 18 8-25 39-56 (60)
2 >1a6b_B Momulv, zinc finger pr 10.0 1.1E+02 0.0033 14.6 1.0 23 7-30 3-25 (40)
3 >1k3r_A Conserved protein MT00 7.6 1.8E+02 0.0053 13.5 1.3 16 9-24 7-24 (76)
4 >1u6p_A GAG polyprotein; MLV, 7.2 1.2E+02 0.0035 14.4 0.2 21 9-30 18-38 (56)
5 >2j01_5 50S ribosomal protein 7.1 1.7E+02 0.005 13.7 0.9 18 8-25 39-56 (60)
6 >1ik9_A DNA repair protein XRC 5.9 1.2E+02 0.0037 14.3 -0.3 14 19-32 35-48 (49)
7 >1ikp_A Exotoxin A; transferas 4.1 3.6E+02 0.011 12.1 1.3 26 22-47 183-211 (241)
8 >2gj6_D A6-TCR; X-RAY crystall 3.5 4E+02 0.012 11.8 1.0 13 14-26 1-13 (88)
9 >1oga_D T-cell receptor alpha 3.4 4.2E+02 0.012 11.8 1.1 13 14-26 1-13 (103)
10 >2ak4_D SB27 T cell receptor a 3.4 4.2E+02 0.012 11.7 1.1 13 14-26 1-13 (92)
No 1
>>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (Z:)
Probab=10.31 E-value=1e+02 Score=14.70 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=14.9
Q ss_pred HHCCCCCCCCCCEEECCC
Q ss_conf 407776777611001122
Q 537021.9.peg.9 8 TRLPHHKDPNTALYREKS 25 (47)
Q Consensus 8 trlphhkdpntalyreks 25 (47)
.++||+-.|+...|+.+.
T Consensus 39 ~~~pH~vC~~CG~Ykgr~ 56 (60)
T 2zjr_Z 39 KKLSHHICPNCGYYDGRQ 56 (60)
T ss_dssp EECTTBCCTTTCBSSSBC
T ss_pred CCCCEEECCCCCCCCCEE
T ss_conf 746606769888199998
No 2
>>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus; HET: DNA; NMR {Synthetic} (B:)
Probab=10.02 E-value=1.1e+02 Score=14.58 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=15.4
Q ss_pred HHHCCCCCCCCCCEEECCCCHHHH
Q ss_conf 540777677761100112200111
Q 537021.9.peg.9 7 RTRLPHHKDPNTALYREKSHWTGL 30 (47)
Q Consensus 7 rtrlphhkdpntalyrekshwtgl 30 (47)
|-|-|-.|| .-|..+|+.||.--
T Consensus 3 r~~p~L~kD-QCAyCke~GHW~~d 25 (40)
T 1a6b_B 3 RRRSQLDRD-QCAYCKEKGHWAKD 25 (40)
T ss_dssp TTCCSCCSS-SCSSSCCTTCCTTS
T ss_pred CCCCCCCCH-HHHHHHHCCCHHHH
T ss_conf 656766601-63777534705430
No 3
>>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} (A:85-160)
Probab=7.56 E-value=1.8e+02 Score=13.55 Aligned_cols=16 Identities=50% Similarity=0.866 Sum_probs=11.7
Q ss_pred HCCCCC--CCCCCEEECC
Q ss_conf 077767--7761100112
Q 537021.9.peg.9 9 RLPHHK--DPNTALYREK 24 (47)
Q Consensus 9 rlphhk--dpntalyrek 24 (47)
+.|||. .+...-|||-
T Consensus 7 d~PHH~~r~~e~~~yREG 24 (76)
T 1k3r_A 7 RTPHHPTGKPVTGEYRQG 24 (76)
T ss_dssp CCTTSCCSSCCTTCEEEE
T ss_pred CCCCCCCCCCCCCCCCCE
T ss_conf 888655677674464235
No 4
>>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A mismatch, U-U mismatch, A-C mismatch, zinc finger, NC; HET: AP7; NMR {Moloney murine leukemia virus} (A:)
Probab=7.22 E-value=1.2e+02 Score=14.42 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=14.2
Q ss_pred HCCCCCCCCCCEEECCCCHHHH
Q ss_conf 0777677761100112200111
Q 537021.9.peg.9 9 RLPHHKDPNTALYREKSHWTGL 30 (47)
Q Consensus 9 rlphhkdpntalyrekshwtgl 30 (47)
|-|-.|| .-|..+|+.||.--
T Consensus 18 rppL~KD-QCAyCKe~GHW~~d 38 (56)
T 1u6p_A 18 RSQLDRD-QCAYCKEKGHWAKD 38 (56)
T ss_dssp STTCCTT-BCSSSCCBSSCGGG
T ss_pred CCCCCCC-HHHHHHHCCCHHHH
T ss_conf 8965511-60555114730200
No 5
>>2j01_5 50S ribosomal protein L32; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (5:)
Probab=7.12 E-value=1.7e+02 Score=13.69 Aligned_cols=18 Identities=22% Similarity=0.480 Sum_probs=14.0
Q ss_pred HHCCCCCCCCCCEEECCC
Q ss_conf 407776777611001122
Q 537021.9.peg.9 8 TRLPHHKDPNTALYREKS 25 (47)
Q Consensus 8 trlphhkdpntalyreks 25 (47)
.++||+-.|+...|+.+.
T Consensus 39 ~~~pH~vC~~CG~Ykgr~ 56 (60)
T 2j01_5 39 MKPPHTVCPECGYYAGRK 56 (60)
T ss_dssp CBCTTCBCTTTCCSSSCC
T ss_pred CCCCEEECCCCCCCCCEE
T ss_conf 206606879898199998
No 6
>>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} (A:1-49)
Probab=5.88 E-value=1.2e+02 Score=14.34 Aligned_cols=14 Identities=50% Similarity=0.743 Sum_probs=9.5
Q ss_pred CEEECCCCHHHHHH
Q ss_conf 10011220011122
Q 537021.9.peg.9 19 ALYREKSHWTGLVS 32 (47)
Q Consensus 19 alyrekshwtglvs 32 (47)
.|-.-.|-|||-||
T Consensus 35 ~LtDG~saWtG~VS 48 (49)
T 1ik9_A 35 TLTDGHSAWTGTVS 48 (49)
T ss_dssp EEECSSCEEEEEEE
T ss_pred EECCCCCCCCCCCC
T ss_conf 96068642200025
No 7
>>1ikp_A Exotoxin A; transferase; 1.45A {Pseudomonas aeruginosa} (A:1-241)
Probab=4.08 E-value=3.6e+02 Score=12.09 Aligned_cols=26 Identities=42% Similarity=0.612 Sum_probs=17.9
Q ss_pred ECC--CCH-HHHHHHHHCCCHHHHHHHCC
Q ss_conf 112--200-11122311130100576239
Q 537021.9.peg.9 22 REK--SHW-TGLVSATRRNLDLHFNKIVQ 47 (47)
Q Consensus 22 rek--shw-tglvsatrrnldlhfnkivq 47 (47)
||| ||| +|++-.---.+|--+|-|.|
T Consensus 183 R~KRWs~W~sG~~LC~L~~lD~vYNYl~Q 211 (241)
T 1ikp_A 183 REKRWSEWASGKVLCLLDQLDGVYNYLAQ 211 (241)
T ss_dssp --CCCHHHHSGGGGGGCGGGTTHHHHHHS
T ss_pred HHHHHHHHHCCCEEEEEHHHHHHHHHHHH
T ss_conf 34455664057468860434449999888
No 8
>>2gj6_D A6-TCR; X-RAY crystallography, HTLV-1 TAX peptide, haptenated peptide, lysine-4-(3-indolyl)-butyric acid, MHC class I,HLA A2, T-cell receptor A6; HET: 3IB; 2.56A {Homo sapiens} (D:113-200)
Probab=3.53 E-value=4e+02 Score=11.84 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=8.8
Q ss_pred CCCCCCEEECCCC
Q ss_conf 7776110011220
Q 537021.9.peg.9 14 KDPNTALYREKSH 26 (47)
Q Consensus 14 kdpntalyreksh 26 (47)
+||+.|+|.-++-
T Consensus 1 q~p~p~vyqlr~~ 13 (88)
T 2gj6_D 1 QNPDPAVYQLRDS 13 (88)
T ss_dssp SSCCCEEEEEEES
T ss_pred CCCCCCEEECCCC
T ss_conf 5578716866676
No 9
>>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} (D:113-215)
Probab=3.38 E-value=4.2e+02 Score=11.76 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=8.9
Q ss_pred CCCCCCEEECCCC
Q ss_conf 7776110011220
Q 537021.9.peg.9 14 KDPNTALYREKSH 26 (47)
Q Consensus 14 kdpntalyreksh 26 (47)
+||+.|+|.-++-
T Consensus 1 ~~p~p~vyqlr~~ 13 (103)
T 1oga_D 1 QNPDPAVYQLRDS 13 (103)
T ss_dssp SSCCCEEEEEEBS
T ss_pred CCCCCCEEECCCC
T ss_conf 6789836847887
No 10
>>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} (D:120-211)
Probab=3.36 E-value=4.2e+02 Score=11.75 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=8.9
Q ss_pred CCCCCCEEECCCC
Q ss_conf 7776110011220
Q 537021.9.peg.9 14 KDPNTALYREKSH 26 (47)
Q Consensus 14 kdpntalyreksh 26 (47)
+||+.|+|.-++-
T Consensus 1 ~~p~p~vyqlr~~ 13 (92)
T 2ak4_D 1 QNPDPAVYQLRDS 13 (92)
T ss_dssp SSCCCEEEEEBCC
T ss_pred CCCCCCEEECCCC
T ss_conf 5578714714588
Done!