BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.912_1
         (47 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.912_1 
          Length = 47

 Score =  100 bits (248), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%)

Query: 1  MNRESFRTRLPHHKDPNTALYREKSHWTGLVSATRRNLDLHFNKIVQ 47
          MNRESFRTRLPHHKDPNTALYREKSHWTGLVSATRRNLDLHFNKIVQ
Sbjct: 1  MNRESFRTRLPHHKDPNTALYREKSHWTGLVSATRRNLDLHFNKIVQ 47


>gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 348

 Score = 25.4 bits (54), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 21  YREKSHWTGLVSATRRNLDLHFNKIVQ 47
           YR+ +HW  L   +R + + +F++I++
Sbjct: 78  YRKSAHWGSLAVNSRISFESYFDQIIR 104


>gi|254780361|ref|YP_003064774.1| ribosomal protein L32 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 61

 Score = 23.5 bits (49), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 2  NRESFRTRLPHHKDPNTALYR 22
          +++S   R PHH D  T LYR
Sbjct: 30 DKKSGELRRPHHVDMKTGLYR 50


>gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 463

 Score = 21.2 bits (43), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 12  HHKDPNTALYREKSHWTGLVSATRRNLDLHFNKIV 46
           HH   N+   +E++  +GL+SAT  +L +   K++
Sbjct: 429 HH---NSTTLKEEAIASGLISATEYDLIVKPEKMI 460


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.132    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,716
Number of Sequences: 1233
Number of extensions: 710
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 47
length of database: 328,796
effective HSP length: 20
effective length of query: 27
effective length of database: 304,136
effective search space:  8211672
effective search space used:  8211672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 31 (16.5 bits)