Query         537021.9.peg.913_1
Match_columns 102
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 03:20:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_913.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3cji_C Polyprotein; virus caps  17.3     7.5 0.00031   18.6  -2.5   20   77-96    200-219 (284)
  2 1tme_2 Theiler'S murine enceph  12.5      11 0.00048   17.6  -2.6   18   78-95    188-205 (267)
  3 1m56_D Cytochrome C oxidase; m  12.2      76  0.0032   13.1   1.6   18    7-24     34-51  (51)
  4 1hxs_2 Genome polyprotein, coa  11.8      13 0.00055   17.3  -2.5   20   77-96    191-210 (272)
  5 1d4m_2 Protein (coxsackievirus  10.6      15 0.00064   16.9  -2.5   19   77-95    183-201 (261)
  6 1pov_0 Poliovirus native empty  10.5      15 0.00065   16.9  -2.5   20   77-96    259-278 (340)
  7 1ncq_B Coat protein VP2; HRV,   10.4      15 0.00065   16.9  -2.5   19   78-96    183-201 (262)
  8 1bds_A BDS-I; anti-hypertensiv   9.9      87  0.0037   12.8   1.2   18   67-84     10-27  (43)
  9 1aym_2 HRV16, human rhinovirus   9.4      17 0.00071   16.7  -2.6   17   79-95    185-201 (261)
 10 1qle_D Cytochrome AA3, ccytoch   9.2      97  0.0041   12.5   1.5   18    7-24     26-43  (43)

No 1  
>3cji_C Polyprotein; virus capsid protein structure, ATP-binding, cytoplasm, cytoplasmic vesicle, helicase, hydrolase, membrane, nucleotide-binding; 2.30A {Seneca valley virus}
Probab=17.32  E-value=7.5  Score=18.62  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=16.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q ss_conf             35860214356542887764
Q 537021.9.peg.9   77 SSMPHGFIALLTNNIVKIVK   96 (102)
Q Consensus        77 ssmphgfialltnnivkivk   96 (102)
                      .-+||.+|-|-|||.+.|+-
T Consensus       200 tifPHQ~INlRTNNsAtivv  219 (284)
T 3cji_C          200 TVFPHQILNARTSTSVDINV  219 (284)
T ss_dssp             GGSSEEEEETTTCSEEEEEE
T ss_pred             EECCHHHCCCCCCCEEEEEE
T ss_conf             53675116777787478993


No 2  
>1tme_2 Theiler'S murine encephalomyelitis virus (subunit VP2); icosahedral virus; 2.80A {Theiler} PDB: 1tmf_2 2mev_2 1mec_2
Probab=12.45  E-value=11  Score=17.62  Aligned_cols=18  Identities=33%  Similarity=0.514  Sum_probs=15.5

Q ss_pred             CCCHHHHHHHHHHHHHHH
Q ss_conf             586021435654288776
Q 537021.9.peg.9   78 SMPHGFIALLTNNIVKIV   95 (102)
Q Consensus        78 smphgfialltnnivkiv   95 (102)
                      -.||.+|-|-|||.+.|+
T Consensus       188 ifPHQ~INlRTNNsAti~  205 (267)
T 1tme_2          188 VYPHQILNLRTNTTVDLE  205 (267)
T ss_dssp             GSSEEEEETTTCSEEEEE
T ss_pred             ECCHHEEECCCCCEEEEE
T ss_conf             057315427878868899


No 3  
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=12.15  E-value=76  Score=13.12  Aligned_cols=18  Identities=33%  Similarity=0.706  Sum_probs=11.8

Q ss_pred             ECCCHHHHHHHHHHHHCC
Q ss_conf             500099999999998538
Q 537021.9.peg.9    7 WENVFFITIFSFLALFGS   24 (102)
Q Consensus         7 wenvffitifsflalfgs   24 (102)
                      |--+.-|.+.-|||+|++
T Consensus        34 ~~~i~ii~iLiFlAi~n~   51 (51)
T 1m56_D           34 WAAVVIVAALIFLALANA   51 (51)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             999999999999999629


No 4  
>1hxs_2 Genome polyprotein, coat protein VP2; picornavirus, AB initio phase determinaion, icosahedral virus; HET: MYR PLM; 2.20A {Human poliovirus 1 mahoney} PDB: 1ar6_2* 1ar8_2* 1asj_2* 1al2_2* 1nn8_2 1po1_2* 1po2_2* 1vbd_2* 2plv_2* 1ar7_2* 1ar9_2* 3epc_2* 1dgi_2* 3iyb_4 3iyc_4 1eah_2* 1xyr_2 3epf_2* 1pvc_2* 1piv_2* ...
Probab=11.76  E-value=13  Score=17.28  Aligned_cols=20  Identities=40%  Similarity=0.504  Sum_probs=16.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q ss_conf             35860214356542887764
Q 537021.9.peg.9   77 SSMPHGFIALLTNNIVKIVK   96 (102)
Q Consensus        77 ssmphgfialltnnivkivk   96 (102)
                      --.||.+|-|-|||.+.|+-
T Consensus       191 tifPHQ~INlRTNnsAti~v  210 (272)
T 1hxs_2          191 FVFPHQIINLRTNNCATLVL  210 (272)
T ss_dssp             GGSSEEEEETTTCSEEEEEE
T ss_pred             HHCCHHEECCCCCCEEEEEE
T ss_conf             64836002368787467995


No 5  
>1d4m_2 Protein (coxsackievirus A9); picornavirus structure, RGD, uncoating, virus-receptor interaction, WIN compound, virus/viral protein; HET: MYR W71; 2.90A {Human coxsackievirus A9} PDB: 1mqt_B* 1oop_B* 1h8t_B* 1upn_B 1m11_2 1cov_2* 1jew_2 1ev1_2* 2c8i_B
Probab=10.59  E-value=15  Score=16.94  Aligned_cols=19  Identities=47%  Similarity=0.651  Sum_probs=15.9

Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q ss_conf             3586021435654288776
Q 537021.9.peg.9   77 SSMPHGFIALLTNNIVKIV   95 (102)
Q Consensus        77 ssmphgfialltnnivkiv   95 (102)
                      .-.||.+|-|-|||...|+
T Consensus       183 tifPHQ~INlRTNnsATi~  201 (261)
T 1d4m_2          183 TIYPHQWINLRTNNSATIV  201 (261)
T ss_dssp             GGSSEEEEETTTCSEEEEE
T ss_pred             CCCCCCEEECCCCCEEEEE
T ss_conf             0377315307768858899


No 6  
>1pov_0 Poliovirus native empty capsid (type 1); picornavirus, icosahedral virus; HET: MYR SPH; 2.80A {Human poliovirus 1 mahoney} SCOP: b.121.4.1
Probab=10.47  E-value=15  Score=16.90  Aligned_cols=20  Identities=40%  Similarity=0.504  Sum_probs=16.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q ss_conf             35860214356542887764
Q 537021.9.peg.9   77 SSMPHGFIALLTNNIVKIVK   96 (102)
Q Consensus        77 ssmphgfialltnnivkivk   96 (102)
                      .-.||.+|-|-|||.+.|+-
T Consensus       259 tifPHQ~INLRTNNsATIvv  278 (340)
T 1pov_0          259 FVFPHQIINLRTNNCATLVL  278 (340)
T ss_dssp             GGSSEEEEETTTCSEEEEEE
T ss_pred             HHCCHHHCCCCCCCEEEEEE
T ss_conf             54735101467787367994


No 7  
>1ncq_B Coat protein VP2; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_2* 1hrv_2* 1na1_B* 1hri_2* 1r08_2* 1r09_2* 1rmu_2 1ruc_2* 1rud_2* 1rue_2* 1ruf_2 1rug_2* 1ruh_2* 1rui_2* 1ruj_2 1rvf_2 1vrh_2* 2r04_2* 2r06_2* 2r07_2* ...
Probab=10.44  E-value=15  Score=16.89  Aligned_cols=19  Identities=53%  Similarity=0.700  Sum_probs=15.8

Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q ss_conf             5860214356542887764
Q 537021.9.peg.9   78 SMPHGFIALLTNNIVKIVK   96 (102)
Q Consensus        78 smphgfialltnnivkivk   96 (102)
                      -.||.+|-|-|||.+.|+-
T Consensus       183 ifPHQ~INlRTNnsAti~v  201 (262)
T 1ncq_B          183 IFPHQFINLRTNNTATIVI  201 (262)
T ss_dssp             GSSEEEEETTTCSEEEEEE
T ss_pred             CCCCEEEECCCCCEEEEEE
T ss_conf             3653064088799899998


No 8  
>1bds_A BDS-I; anti-hypertensive, anti-viral protein; NMR {Anemonia sulcata} SCOP: g.9.1.1 PDB: 2bds_A
Probab=9.92  E-value=87  Score=12.80  Aligned_cols=18  Identities=39%  Similarity=0.728  Sum_probs=15.2

Q ss_pred             ECCCEEEEECCCCCHHHH
Q ss_conf             155314653135860214
Q 537021.9.peg.9   67 WGRGELFKLSSSMPHGFI   84 (102)
Q Consensus        67 wgrgelfklsssmphgfi   84 (102)
                      =|||+|.-|...-|.|+-
T Consensus        10 pgrgdlwilrgtcpggyg   27 (43)
T 1bds_A           10 PGRGDLWILRGTCPGGYG   27 (43)
T ss_dssp             CSCCEEECSCSSCCTTTC
T ss_pred             CCCCCEEEEECCCCCCCC
T ss_conf             887747899532688753


No 9  
>1aym_2 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} PDB: 1ayn_2* 1ncr_B* 1nd2_B* 1nd3_B* 1qju_2* 1qjx_2* 1qjy_2* 1c8m_2* 1d3e_2 1r1a_2* 2hwd_2* 2hwe_2* 2hwf_2* 1fpn_2* 1v9u_2* 3dpr_B*
Probab=9.36  E-value=17  Score=16.69  Aligned_cols=17  Identities=41%  Similarity=0.786  Sum_probs=14.9

Q ss_pred             CCHHHHHHHHHHHHHHH
Q ss_conf             86021435654288776
Q 537021.9.peg.9   79 MPHGFIALLTNNIVKIV   95 (102)
Q Consensus        79 mphgfialltnnivkiv   95 (102)
                      .||.+|-|-|||.+.|+
T Consensus       185 fPHQ~INlRTNnsAti~  201 (261)
T 1aym_2          185 FPHQFINLRSNNSATLI  201 (261)
T ss_dssp             SSEEEEETTTCSEEEEE
T ss_pred             CCHHEEECCCCCEEEEE
T ss_conf             47420027768868899


No 10 
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=9.24  E-value=97  Score=12.53  Aligned_cols=18  Identities=39%  Similarity=0.776  Sum_probs=0.0

Q ss_pred             ECCCHHHHHHHHHHHHCC
Q ss_conf             500099999999998538
Q 537021.9.peg.9    7 WENVFFITIFSFLALFGS   24 (102)
Q Consensus         7 wenvffitifsflalfgs   24 (102)
                      |--+.-|-+.-|||+|.+
T Consensus        26 ~~~i~~i~~liFlAifns   43 (43)
T 1qle_D           26 WVSILSIAVLVFLALANS   43 (43)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             999999999999999639


Done!