Query 537021.9.peg.913_1 Match_columns 102 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 03:20:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_913.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3cji_C Polyprotein; virus caps 17.3 7.5 0.00031 18.6 -2.5 20 77-96 200-219 (284) 2 1tme_2 Theiler'S murine enceph 12.5 11 0.00048 17.6 -2.6 18 78-95 188-205 (267) 3 1m56_D Cytochrome C oxidase; m 12.2 76 0.0032 13.1 1.6 18 7-24 34-51 (51) 4 1hxs_2 Genome polyprotein, coa 11.8 13 0.00055 17.3 -2.5 20 77-96 191-210 (272) 5 1d4m_2 Protein (coxsackievirus 10.6 15 0.00064 16.9 -2.5 19 77-95 183-201 (261) 6 1pov_0 Poliovirus native empty 10.5 15 0.00065 16.9 -2.5 20 77-96 259-278 (340) 7 1ncq_B Coat protein VP2; HRV, 10.4 15 0.00065 16.9 -2.5 19 78-96 183-201 (262) 8 1bds_A BDS-I; anti-hypertensiv 9.9 87 0.0037 12.8 1.2 18 67-84 10-27 (43) 9 1aym_2 HRV16, human rhinovirus 9.4 17 0.00071 16.7 -2.6 17 79-95 185-201 (261) 10 1qle_D Cytochrome AA3, ccytoch 9.2 97 0.0041 12.5 1.5 18 7-24 26-43 (43) No 1 >3cji_C Polyprotein; virus capsid protein structure, ATP-binding, cytoplasm, cytoplasmic vesicle, helicase, hydrolase, membrane, nucleotide-binding; 2.30A {Seneca valley virus} Probab=17.32 E-value=7.5 Score=18.62 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.9 Q ss_pred CCCCHHHHHHHHHHHHHHHH Q ss_conf 35860214356542887764 Q 537021.9.peg.9 77 SSMPHGFIALLTNNIVKIVK 96 (102) Q Consensus 77 ssmphgfialltnnivkivk 96 (102) .-+||.+|-|-|||.+.|+- T Consensus 200 tifPHQ~INlRTNNsAtivv 219 (284) T 3cji_C 200 TVFPHQILNARTSTSVDINV 219 (284) T ss_dssp GGSSEEEEETTTCSEEEEEE T ss_pred EECCHHHCCCCCCCEEEEEE T ss_conf 53675116777787478993 No 2 >1tme_2 Theiler'S murine encephalomyelitis virus (subunit VP2); icosahedral virus; 2.80A {Theiler} PDB: 1tmf_2 2mev_2 1mec_2 Probab=12.45 E-value=11 Score=17.62 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.5 Q ss_pred CCCHHHHHHHHHHHHHHH Q ss_conf 586021435654288776 Q 537021.9.peg.9 78 SMPHGFIALLTNNIVKIV 95 (102) Q Consensus 78 smphgfialltnnivkiv 95 (102) -.||.+|-|-|||.+.|+ T Consensus 188 ifPHQ~INlRTNNsAti~ 205 (267) T 1tme_2 188 VYPHQILNLRTNTTVDLE 205 (267) T ss_dssp GSSEEEEETTTCSEEEEE T ss_pred ECCHHEEECCCCCEEEEE T ss_conf 057315427878868899 No 3 >1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D* Probab=12.15 E-value=76 Score=13.12 Aligned_cols=18 Identities=33% Similarity=0.706 Sum_probs=11.8 Q ss_pred ECCCHHHHHHHHHHHHCC Q ss_conf 500099999999998538 Q 537021.9.peg.9 7 WENVFFITIFSFLALFGS 24 (102) Q Consensus 7 wenvffitifsflalfgs 24 (102) |--+.-|.+.-|||+|++ T Consensus 34 ~~~i~ii~iLiFlAi~n~ 51 (51) T 1m56_D 34 WAAVVIVAALIFLALANA 51 (51) T ss_dssp HHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 999999999999999629 No 4 >1hxs_2 Genome polyprotein, coat protein VP2; picornavirus, AB initio phase determinaion, icosahedral virus; HET: MYR PLM; 2.20A {Human poliovirus 1 mahoney} PDB: 1ar6_2* 1ar8_2* 1asj_2* 1al2_2* 1nn8_2 1po1_2* 1po2_2* 1vbd_2* 2plv_2* 1ar7_2* 1ar9_2* 3epc_2* 1dgi_2* 3iyb_4 3iyc_4 1eah_2* 1xyr_2 3epf_2* 1pvc_2* 1piv_2* ... Probab=11.76 E-value=13 Score=17.28 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=16.7 Q ss_pred CCCCHHHHHHHHHHHHHHHH Q ss_conf 35860214356542887764 Q 537021.9.peg.9 77 SSMPHGFIALLTNNIVKIVK 96 (102) Q Consensus 77 ssmphgfialltnnivkivk 96 (102) --.||.+|-|-|||.+.|+- T Consensus 191 tifPHQ~INlRTNnsAti~v 210 (272) T 1hxs_2 191 FVFPHQIINLRTNNCATLVL 210 (272) T ss_dssp GGSSEEEEETTTCSEEEEEE T ss_pred HHCCHHEECCCCCCEEEEEE T ss_conf 64836002368787467995 No 5 >1d4m_2 Protein (coxsackievirus A9); picornavirus structure, RGD, uncoating, virus-receptor interaction, WIN compound, virus/viral protein; HET: MYR W71; 2.90A {Human coxsackievirus A9} PDB: 1mqt_B* 1oop_B* 1h8t_B* 1upn_B 1m11_2 1cov_2* 1jew_2 1ev1_2* 2c8i_B Probab=10.59 E-value=15 Score=16.94 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=15.9 Q ss_pred CCCCHHHHHHHHHHHHHHH Q ss_conf 3586021435654288776 Q 537021.9.peg.9 77 SSMPHGFIALLTNNIVKIV 95 (102) Q Consensus 77 ssmphgfialltnnivkiv 95 (102) .-.||.+|-|-|||...|+ T Consensus 183 tifPHQ~INlRTNnsATi~ 201 (261) T 1d4m_2 183 TIYPHQWINLRTNNSATIV 201 (261) T ss_dssp GGSSEEEEETTTCSEEEEE T ss_pred CCCCCCEEECCCCCEEEEE T ss_conf 0377315307768858899 No 6 >1pov_0 Poliovirus native empty capsid (type 1); picornavirus, icosahedral virus; HET: MYR SPH; 2.80A {Human poliovirus 1 mahoney} SCOP: b.121.4.1 Probab=10.47 E-value=15 Score=16.90 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=16.8 Q ss_pred CCCCHHHHHHHHHHHHHHHH Q ss_conf 35860214356542887764 Q 537021.9.peg.9 77 SSMPHGFIALLTNNIVKIVK 96 (102) Q Consensus 77 ssmphgfialltnnivkivk 96 (102) .-.||.+|-|-|||.+.|+- T Consensus 259 tifPHQ~INLRTNNsATIvv 278 (340) T 1pov_0 259 FVFPHQIINLRTNNCATLVL 278 (340) T ss_dssp GGSSEEEEETTTCSEEEEEE T ss_pred HHCCHHHCCCCCCCEEEEEE T ss_conf 54735101467787367994 No 7 >1ncq_B Coat protein VP2; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_2* 1hrv_2* 1na1_B* 1hri_2* 1r08_2* 1r09_2* 1rmu_2 1ruc_2* 1rud_2* 1rue_2* 1ruf_2 1rug_2* 1ruh_2* 1rui_2* 1ruj_2 1rvf_2 1vrh_2* 2r04_2* 2r06_2* 2r07_2* ... Probab=10.44 E-value=15 Score=16.89 Aligned_cols=19 Identities=53% Similarity=0.700 Sum_probs=15.8 Q ss_pred CCCHHHHHHHHHHHHHHHH Q ss_conf 5860214356542887764 Q 537021.9.peg.9 78 SMPHGFIALLTNNIVKIVK 96 (102) Q Consensus 78 smphgfialltnnivkivk 96 (102) -.||.+|-|-|||.+.|+- T Consensus 183 ifPHQ~INlRTNnsAti~v 201 (262) T 1ncq_B 183 IFPHQFINLRTNNTATIVI 201 (262) T ss_dssp GSSEEEEETTTCSEEEEEE T ss_pred CCCCEEEECCCCCEEEEEE T ss_conf 3653064088799899998 No 8 >1bds_A BDS-I; anti-hypertensive, anti-viral protein; NMR {Anemonia sulcata} SCOP: g.9.1.1 PDB: 2bds_A Probab=9.92 E-value=87 Score=12.80 Aligned_cols=18 Identities=39% Similarity=0.728 Sum_probs=15.2 Q ss_pred ECCCEEEEECCCCCHHHH Q ss_conf 155314653135860214 Q 537021.9.peg.9 67 WGRGELFKLSSSMPHGFI 84 (102) Q Consensus 67 wgrgelfklsssmphgfi 84 (102) =|||+|.-|...-|.|+- T Consensus 10 pgrgdlwilrgtcpggyg 27 (43) T 1bds_A 10 PGRGDLWILRGTCPGGYG 27 (43) T ss_dssp CSCCEEECSCSSCCTTTC T ss_pred CCCCCEEEEECCCCCCCC T ss_conf 887747899532688753 No 9 >1aym_2 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} PDB: 1ayn_2* 1ncr_B* 1nd2_B* 1nd3_B* 1qju_2* 1qjx_2* 1qjy_2* 1c8m_2* 1d3e_2 1r1a_2* 2hwd_2* 2hwe_2* 2hwf_2* 1fpn_2* 1v9u_2* 3dpr_B* Probab=9.36 E-value=17 Score=16.69 Aligned_cols=17 Identities=41% Similarity=0.786 Sum_probs=14.9 Q ss_pred CCHHHHHHHHHHHHHHH Q ss_conf 86021435654288776 Q 537021.9.peg.9 79 MPHGFIALLTNNIVKIV 95 (102) Q Consensus 79 mphgfialltnnivkiv 95 (102) .||.+|-|-|||.+.|+ T Consensus 185 fPHQ~INlRTNnsAti~ 201 (261) T 1aym_2 185 FPHQFINLRSNNSATLI 201 (261) T ss_dssp SSEEEEETTTCSEEEEE T ss_pred CCHHEEECCCCCEEEEE T ss_conf 47420027768868899 No 10 >1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1 Probab=9.24 E-value=97 Score=12.53 Aligned_cols=18 Identities=39% Similarity=0.776 Sum_probs=0.0 Q ss_pred ECCCHHHHHHHHHHHHCC Q ss_conf 500099999999998538 Q 537021.9.peg.9 7 WENVFFITIFSFLALFGS 24 (102) Q Consensus 7 wenvffitifsflalfgs 24 (102) |--+.-|-+.-|||+|.+ T Consensus 26 ~~~i~~i~~liFlAifns 43 (43) T 1qle_D 26 WVSILSIAVLVFLALANS 43 (43) T ss_dssp HHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 999999999999999639 Done!