Query 537021.9.peg.913_1 Match_columns 102 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed May 25 02:41:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_913.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2qqra2 b.34.9.1 (A:956-1011) 12.8 42 0.003 13.2 3.4 37 44-80 20-56 (56) 2 g1tme.1 b.121.4.1 (4:,2:) Thei 11.3 7.5 0.00055 17.3 -2.6 19 77-95 201-219 (280) 3 g1d4m.1 b.121.4.1 (4:,2:) Huma 10.5 8.3 0.0006 17.1 -2.6 19 77-95 242-260 (320) 4 g1ncq.1 b.121.4.1 (D:,B:) Rhin 10.2 8.6 0.00063 17.0 -2.6 19 78-96 216-234 (295) 5 d1bdsa_ g.9.1.1 (A:) BDs-I def 9.9 50 0.0037 12.8 1.2 18 67-84 10-27 (43) 6 d1qled_ f.23.8.1 (D:) Bacteria 8.5 60 0.0044 12.4 1.5 18 7-24 26-43 (43) 7 g1aym.1 b.121.4.1 (4:,2:) Rhin 7.7 13 0.00092 16.1 -2.6 19 78-96 219-237 (296) 8 d1m56d_ f.23.8.1 (D:) Bacteria 7.4 68 0.005 12.1 1.6 18 7-24 25-42 (42) 9 g1pvc.1 b.121.4.1 (4:,2:) Poli 7.2 14 0.001 15.9 -2.6 19 78-96 254-272 (334) 10 d1foea2 b.55.1.1 (A:1240-1401) 7.1 70 0.0051 12.0 2.9 35 57-96 107-152 (162) No 1 >d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Probab=12.82 E-value=42 Score=13.23 Aligned_cols=37 Identities=14% Similarity=0.395 Sum_probs=31.3 Q ss_pred EEEEEECCCCEEEEECCCCCCEEECCCEEEEECCCCC Q ss_conf 5888725651256413765310115531465313586 Q 537021.9.peg.9 44 ITFFSCSESSFFSFSADSDSKAMWGRGELFKLSSSMP 80 (102) Q Consensus 44 itffscsessffsfsadsdskamwgrgelfklsssmp 80 (102) -.|.++.-+..+.-.-+..|.-|--|.++++|.-.+| T Consensus 20 A~f~~~~~~~~YqVeFEDgSql~vKR~dIytl~EeLP 56 (56) T d2qqra2 20 AKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELP 56 (56) T ss_dssp EEEEEEEEEEEEEEEETTSCEEEECGGGEEETTSCCC T ss_pred EEEEECCEEEEEEEEECCCCEEEEEHHHEECCCCCCC T ss_conf 8997010169999998479688774457021356497 No 2 >g1tme.1 b.121.4.1 (4:,2:) Theilovirus capsid proteins {Theiler's murine encephalomyelitis virus, strain da [TaxId: 12124]} Probab=11.28 E-value=7.5 Score=17.30 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.8 Q ss_pred CCCCHHHHHHHHHHHHHHH Q ss_conf 3586021435654288776 Q 537021.9.peg.9 77 SSMPHGFIALLTNNIVKIV 95 (102) Q Consensus 77 ssmphgfialltnnivkiv 95 (102) .--||.+|-|-|||.+.|+ T Consensus 201 tifPHQ~INlRTNnsAti~ 219 (280) T g1tme.1 201 TVYPHQILNLRTNTTVDLE 219 (280) T ss_dssp GGSSEEEEETTTCSEEEEE T ss_pred EECCCCEECCCCCCEEEEE T ss_conf 2247204117768847899 No 3 >g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human coxsackievirus A9 [TaxId: 12067]} Probab=10.53 E-value=8.3 Score=17.07 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=16.1 Q ss_pred CCCCHHHHHHHHHHHHHHH Q ss_conf 3586021435654288776 Q 537021.9.peg.9 77 SSMPHGFIALLTNNIVKIV 95 (102) Q Consensus 77 ssmphgfialltnnivkiv 95 (102) .-.||.+|-|-|||.+.|+ T Consensus 242 tifPHQ~INlRTNnsAti~ 260 (320) T g1d4m.1 242 TIYPHQWINLRTNNSATIV 260 (320) T ss_dssp GGSSEEEEETTTCSEEEEE T ss_pred HHCCCCCCCCCCCCEEEEE T ss_conf 2121102444668735898 No 4 >g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14) [TaxId: 12131]} Probab=10.25 E-value=8.6 Score=16.98 Aligned_cols=19 Identities=53% Similarity=0.700 Sum_probs=16.0 Q ss_pred CCCHHHHHHHHHHHHHHHH Q ss_conf 5860214356542887764 Q 537021.9.peg.9 78 SMPHGFIALLTNNIVKIVK 96 (102) Q Consensus 78 smphgfialltnnivkivk 96 (102) -.||.+|-|-|||.+.|+- T Consensus 216 ifPHQ~INlRTNnsAti~v 234 (295) T g1ncq.1 216 IFPHQFINLRTNNTATIVI 234 (295) T ss_dssp GSSEEEEETTTCSEEEEEE T ss_pred CCCHHCCCCCCCCEEEEEE T ss_conf 2656400377687578997 No 5 >d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]} Probab=9.92 E-value=50 Score=12.80 Aligned_cols=18 Identities=39% Similarity=0.728 Sum_probs=15.2 Q ss_pred ECCCEEEEECCCCCHHHH Q ss_conf 155314653135860214 Q 537021.9.peg.9 67 WGRGELFKLSSSMPHGFI 84 (102) Q Consensus 67 wgrgelfklsssmphgfi 84 (102) =|||+|.-|...-|.|+- T Consensus 10 pgrgdlwilrgtcpggyg 27 (43) T d1bdsa_ 10 PGRGDLWILRGTCPGGYG 27 (43) T ss_dssp CSCCEEECSCSSCCTTTC T ss_pred CCCCCEEEEECCCCCCCC T ss_conf 887747899532688753 No 6 >d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]} Probab=8.55 E-value=60 Score=12.37 Aligned_cols=18 Identities=39% Similarity=0.776 Sum_probs=10.4 Q ss_pred ECCCHHHHHHHHHHHHCC Q ss_conf 500099999999998538 Q 537021.9.peg.9 7 WENVFFITIFSFLALFGS 24 (102) Q Consensus 7 wenvffitifsflalfgs 24 (102) |-.+.-|.+.-|||+|.+ T Consensus 26 ~~~i~~i~~liflAi~ns 43 (43) T d1qled_ 26 WVSILSIAVLVFLALANS 43 (43) T ss_dssp HHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 999999999999999629 No 7 >g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]} Probab=7.67 E-value=13 Score=16.06 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=15.7 Q ss_pred CCCHHHHHHHHHHHHHHHH Q ss_conf 5860214356542887764 Q 537021.9.peg.9 78 SMPHGFIALLTNNIVKIVK 96 (102) Q Consensus 78 smphgfialltnnivkivk 96 (102) -.||.+|-|-|||.+.|+- T Consensus 219 ifPHQ~INlRTNnsAti~v 237 (296) T g1aym.1 219 IFPHQFINLRSNNSATLIV 237 (296) T ss_dssp GSSEEEEETTTCSEEEEEE T ss_pred ECCHHEECCCCCCEEEEEE T ss_conf 5475410177687478997 No 8 >d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]} Probab=7.40 E-value=68 Score=12.08 Aligned_cols=18 Identities=33% Similarity=0.706 Sum_probs=10.3 Q ss_pred ECCCHHHHHHHHHHHHCC Q ss_conf 500099999999998538 Q 537021.9.peg.9 7 WENVFFITIFSFLALFGS 24 (102) Q Consensus 7 wenvffitifsflalfgs 24 (102) |--+.-|.+.-|||+|.| T Consensus 25 ~~~i~~i~~liflAi~ns 42 (42) T d1m56d_ 25 WAAVVIVAALIFLALANA 42 (42) T ss_dssp HHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 999999999999999639 No 9 >g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type 3, strain Sabin [TaxId: 12086]} Probab=7.23 E-value=14 Score=15.88 Aligned_cols=19 Identities=47% Similarity=0.557 Sum_probs=16.0 Q ss_pred CCCHHHHHHHHHHHHHHHH Q ss_conf 5860214356542887764 Q 537021.9.peg.9 78 SMPHGFIALLTNNIVKIVK 96 (102) Q Consensus 78 smphgfialltnnivkivk 96 (102) -.||-+|-|-|||...|+- T Consensus 254 ifPHQ~INLRTNnsAtI~v 272 (334) T g1pvc.1 254 VYPHQIINLRTNNSATIVL 272 (334) T ss_dssp GSSEEEEETTTCSEEEEEE T ss_pred CCCHHEEECCCCCEEEEEE T ss_conf 0565545367787578997 No 10 >d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=7.11 E-value=70 Score=12.00 Aligned_cols=35 Identities=37% Similarity=0.561 Sum_probs=23.8 Q ss_pred EECCCCCCEEE----------CCCE-EEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 41376531011----------5531-4653135860214356542887764 Q 537021.9.peg.9 57 FSADSDSKAMW----------GRGE-LFKLSSSMPHGFIALLTNNIVKIVK 96 (102) Q Consensus 57 fsadsdskamw----------grge-lfklsssmphgfialltnnivkivk 96 (102) -.+|+++.++| ||-| .|.|.+|-|. ..|+++|.++ T Consensus 107 ~~~~~es~~vwEiiH~kSe~egRpE~vfqlc~St~E-----~K~~flK~Ir 152 (162) T d1foea2 107 PSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPE-----SRKDFLKSVH 152 (162) T ss_dssp CCTTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHH-----HHHHHHHHHH T ss_pred CCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCHH-----HHHHHHHHHH T ss_conf 666787655799996023115886059998629978-----9888999999 Done!