RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.913_1 (102 letters) >1aym_2 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} PDB: 1ayn_2* 1ncr_B* 1nd2_B* 1nd3_B* 1qju_2* 1qjx_2* 1qjy_2* 1c8m_2* 1d3e_2 1r1a_2* 2hwd_2* 2hwe_2* 2hwf_2* 1fpn_2* 1v9u_2* 3dpr_B* (2:) Length = 261 Score = 24.1 bits (52), Expect = 8.0 Identities = 7/17 (41%), Positives = 10/17 (58%) Query: 79 MPHGFIALLTNNIVKIV 95 PH FI L +NN ++ Sbjct: 185 FPHQFINLRSNNSATLI 201 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.333 0.141 0.454 Gapped Lambda K H 0.267 0.0607 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 754,308 Number of extensions: 26900 Number of successful extensions: 103 Number of sequences better than 10.0: 1 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 5 Length of query: 102 Length of database: 4,956,049 Length adjustment: 60 Effective length of query: 42 Effective length of database: 2,927,749 Effective search space: 122965458 Effective search space used: 122965458 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 50 (23.3 bits)