RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.913_1
         (102 letters)



>1aym_2 HRV16, human rhinovirus 16 coat protein; RNA, site-directed
           mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A
           {Human rhinovirus SP} PDB: 1ayn_2* 1ncr_B* 1nd2_B*
           1nd3_B* 1qju_2* 1qjx_2* 1qjy_2* 1c8m_2* 1d3e_2 1r1a_2*
           2hwd_2* 2hwe_2* 2hwf_2* 1fpn_2* 1v9u_2* 3dpr_B* (2:)
          Length = 261

 Score = 24.1 bits (52), Expect = 8.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 79  MPHGFIALLTNNIVKIV 95
            PH FI L +NN   ++
Sbjct: 185 FPHQFINLRSNNSATLI 201


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.333    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 754,308
Number of extensions: 26900
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 5
Length of query: 102
Length of database: 4,956,049
Length adjustment: 60
Effective length of query: 42
Effective length of database: 2,927,749
Effective search space: 122965458
Effective search space used: 122965458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 50 (23.3 bits)