Query 537021.9.peg.930_1 Match_columns 51 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 04:40:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_930.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2au3_A DNA primase; zinc ribb 28.3 27 0.0008 16.9 1.4 34 7-41 11-44 (58) 2 >3fy6_A Integron cassette prot 22.1 44 0.0013 15.8 1.6 11 32-42 78-88 (117) 3 >3l32_A Phosphoprotein; antipa 10.4 93 0.0027 14.1 0.8 37 1-46 1-37 (45) 4 >2nr7_A Secretion activator pr 10.0 1.4E+02 0.0042 13.1 2.8 23 25-47 92-114 (116) 5 >2p3y_A Hypothetical protein V 9.8 1.4E+02 0.0041 13.2 1.4 13 7-19 103-115 (123) 6 >2ikb_A Hypothetical protein N 8.9 1.6E+02 0.0046 12.9 1.4 23 27-49 69-91 (98) 7 >2es4_D Lipase chaperone; prot 8.2 1.3E+02 0.0038 13.3 0.8 11 14-24 86-96 (147) 8 >3e3x_A BIPA; MCSG,PSI2, struc 6.7 51 0.0015 15.5 -1.9 11 8-18 23-33 (71) 9 >2nvp_A Hypothetical protein; 6.1 2E+02 0.0061 12.3 1.0 39 6-48 90-130 (155) 10 >2p0v_A Hypothetical protein B 5.8 2.3E+02 0.0067 12.1 1.5 39 6-48 92-132 (187) No 1 >>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:350-407) Probab=28.26 E-value=27 Score=16.90 Aligned_cols=34 Identities=38% Similarity=0.634 Sum_probs=26.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 66842303399999999999856677999999999 Q 537021.9.peg.9 7 NYNLDERGRFFCYFLSLLIVDTLRSFSLFQHLWLK 41 (51) Q Consensus 7 nynldergrffcyflsllivdtlrsfslfqhlwlk 41 (51) .-||.|..|-|-|+|.. |.|..|.|.|-....-| T Consensus 11 renleektrefryylgf-isdgvrrfalasefhtk 44 (58) T 2au3_A 11 RENLEEKTREFRYYLGF-ISDGVRRFALASEFHTK 44 (58) T ss_dssp GGCHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH T ss_pred HHCCCCCCHHHHHHHHH-CCCHHHHHHHHHHHHHH T ss_conf 73788578999999986-88999999999999999 No 2 >>3fy6_A Integron cassette protein; novel, oyster POND, woodshole,USA, unknown function, structural genomics, PSI-2, protein structure initiative; 2.10A {Vibrio cholerae} (A:1-117) Probab=22.06 E-value=44 Score=15.80 Aligned_cols=11 Identities=55% Similarity=1.048 Sum_probs=8.8 Q ss_pred HHHHHHHHHHH Q ss_conf 79999999999 Q 537021.9.peg.9 32 FSLFQHLWLKR 42 (51) Q Consensus 32 fslfqhlwlkr 42 (51) -.||||.||.- T Consensus 78 qnlfqhawlew 88 (117) T 3fy6_A 78 QNLFQHAWLEW 88 (117) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 3 >>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus} (A:) Probab=10.45 E-value=93 Score=14.09 Aligned_cols=37 Identities=35% Similarity=0.692 Sum_probs=22.9 Q ss_pred CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9212136684230339999999999985667799999999999988 Q 537021.9.peg.9 1 MAFFFNNYNLDERGRFFCYFLSLLIVDTLRSFSLFQHLWLKRLSSI 46 (51) Q Consensus 1 mafffnnynldergrffcyflsllivdtlrsfslfqhlwlkrlssi 46 (51) |+..|.+| ||+-| .-||..+||=.-|-..|-.....| T Consensus 1 ~~llfQsy-Ld~vG--------~qiVr~mksGe~F~KIWS~~veeI 37 (45) T 3l32_A 1 MNLLFQSY-LDNVG--------VQIVRQMRSGERFLKIWSQTVEEI 37 (45) T ss_dssp -CHHHHHH-HHHHH--------HHHHHHHTTTCCHHHHHHHHHHHH T ss_pred CCHHHHHH-HHHHH--------HHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 94279999-99999--------999999863562999999999999 No 4 >>2nr7_A Secretion activator protein, putative; APCC85792, structural genomics, PSI-2, protein structure initiative, MCSG; 1.30A {Porphyromonas gingivalis W83} (A:80-195) Probab=10.01 E-value=1.4e+02 Score=13.12 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99856677999999999999887 Q 537021.9.peg.9 25 IVDTLRSFSLFQHLWLKRLSSIL 47 (51) Q Consensus 25 ivdtlrsfslfqhlwlkrlssil 47 (51) .++.-+|+.-|..=|+.|..+++ T Consensus 92 ~~~~~~s~~~F~~GW~nR~~~~~ 114 (116) T 2nr7_A 92 RELLRHTNKRFLRGWLNRLEDIR 114 (116) T ss_dssp HHHHHHSTHHHHHHHHHHHHHGG T ss_pred HHHCCCCHHHHHHHHHHHHHHHH T ss_conf 54304206478688999999976 No 5 >>2p3y_A Hypothetical protein VPA0735; structural genomics, PSI-2, protein structure initiative; 1.80A {Vibrio parahaemolyticus rimd 2210633} (A:40-65,A:256-352) Probab=9.76 E-value=1.4e+02 Score=13.18 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=9.8 Q ss_pred CCCHHHHHHHHHH Q ss_conf 6684230339999 Q 537021.9.peg.9 7 NYNLDERGRFFCY 19 (51) Q Consensus 7 nynldergrffcy 19 (51) -++||.|..||-+ T Consensus 103 ~~~lDaR~~ffy~ 115 (123) T 2p3y_A 103 YDELDERAAWFYE 115 (123) T ss_dssp SBCHHHHHHHHHH T ss_pred CCHHHHHHHHHHH T ss_conf 4114567899999 No 6 >>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Neisseria meningitidis MC58} (A:70-167) Probab=8.91 E-value=1.6e+02 Score=12.89 Aligned_cols=23 Identities=26% Similarity=0.655 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85667799999999999988740 Q 537021.9.peg.9 27 DTLRSFSLFQHLWLKRLSSILVQ 49 (51) Q Consensus 27 dtlrsfslfqhlwlkrlssilvq 49 (51) ..|.++.-|..=|++|..+++-+ T Consensus 69 ~~l~~~~~F~~GW~~R~~~~~~~ 91 (98) T 2ikb_A 69 TKLGTFTSFGKGWVRRVAQNLIH 91 (98) T ss_dssp HHHCCSSHHHHHHHHHHHHHHHH T ss_pred HHCCCHHHHHHHHHHHHHHHHHH T ss_conf 85674277888899999999986 No 7 >>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} (D:1-147) Probab=8.16 E-value=1.3e+02 Score=13.33 Aligned_cols=11 Identities=36% Similarity=0.627 Sum_probs=8.7 Q ss_pred HHHHHHHHHHH Q ss_conf 33999999999 Q 537021.9.peg.9 14 GRFFCYFLSLL 24 (51) Q Consensus 14 grffcyflsll 24 (51) -.||-||||-+ T Consensus 86 Rd~FDYFLSa~ 96 (147) T 2es4_D 86 REFFDYXLTAQ 96 (147) T ss_dssp HHHHHHHHTTG T ss_pred HHHHHHHHHCC T ss_conf 99999987513 No 8 >>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein structure initiative, midwest center for structural genomics, GTP-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} (A:207-277) Probab=6.73 E-value=51 Score=15.47 Aligned_cols=11 Identities=64% Similarity=1.250 Sum_probs=7.3 Q ss_pred CCHHHHHHHHH Q ss_conf 68423033999 Q 537021.9.peg.9 8 YNLDERGRFFC 18 (51) Q Consensus 8 ynldergrffc 18 (51) .+|.+||+||. T Consensus 23 ~~lq~RG~lFV 33 (71) T 3e3x_A 23 FNLQERGRLFI 33 (71) T ss_dssp HHHTTSEEESC T ss_pred HHHHHHCEEEE T ss_conf 98875311886 No 9 >>2nvp_A Hypothetical protein; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Clostridium perfringens} (A:41-195) Probab=6.15 E-value=2e+02 Score=12.28 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=26.6 Q ss_pred CCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3668423033999999999--998566779999999999998874 Q 537021.9.peg.9 6 NNYNLDERGRFFCYFLSLL--IVDTLRSFSLFQHLWLKRLSSILV 48 (51) Q Consensus 6 nnynldergrffcyflsll--ivdtlrsfslfqhlwlkrlssilv 48 (51) -+|.+|- .|||+.|. .-..-..-+.|..-|++-+..||- T Consensus 90 rKyEiDS----Lcypl~La~~y~~~Tgd~~~f~~~w~~A~~~il~ 130 (155) T 2nvp_A 90 RKYEIDS----LCYPVRLIHKYWKESGDETFFNDDIKKAFNXIID 130 (155) T ss_dssp CCCCHHH----HHHHHHHHHHHHHHHCCCSSCCHHHHHHHHHHHH T ss_pred EEHHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 5236665----5789999999998649846660999999999999 No 10 >>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} (A:84-270) Probab=5.84 E-value=2.3e+02 Score=12.06 Aligned_cols=39 Identities=26% Similarity=0.596 Sum_probs=27.4 Q ss_pred CCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 366842303399999999--9998566779999999999998874 Q 537021.9.peg.9 6 NNYNLDERGRFFCYFLSL--LIVDTLRSFSLFQHLWLKRLSSILV 48 (51) Q Consensus 6 nnynldergrffcyflsl--livdtlrsfslfqhlwlkrlssilv 48 (51) -+|.+|- .|||+.| ..-..-..-+.|..-|++-+..|+- T Consensus 92 rKyEiDS----L~~~l~La~~y~~~Tgd~~~f~~~w~~Av~~il~ 132 (187) T 2p0v_A 92 RKWEIDS----LCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLK 132 (187) T ss_dssp CCCCHHH----HHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHH T ss_pred EHHHHHH----HHHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHH T ss_conf 2247777----6889999999999739846406899999999999 Done!