Query         537021.9.peg.930_1
Match_columns 51
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 04:40:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_930.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2au3_A DNA primase; zinc ribb  28.3      27  0.0008   16.9   1.4   34    7-41     11-44  (58)
  2 >3fy6_A Integron cassette prot  22.1      44  0.0013   15.8   1.6   11   32-42     78-88  (117)
  3 >3l32_A Phosphoprotein; antipa  10.4      93  0.0027   14.1   0.8   37    1-46      1-37  (45)
  4 >2nr7_A Secretion activator pr  10.0 1.4E+02  0.0042   13.1   2.8   23   25-47     92-114 (116)
  5 >2p3y_A Hypothetical protein V   9.8 1.4E+02  0.0041   13.2   1.4   13    7-19    103-115 (123)
  6 >2ikb_A Hypothetical protein N   8.9 1.6E+02  0.0046   12.9   1.4   23   27-49     69-91  (98)
  7 >2es4_D Lipase chaperone; prot   8.2 1.3E+02  0.0038   13.3   0.8   11   14-24     86-96  (147)
  8 >3e3x_A BIPA; MCSG,PSI2, struc   6.7      51  0.0015   15.5  -1.9   11    8-18     23-33  (71)
  9 >2nvp_A Hypothetical protein;    6.1   2E+02  0.0061   12.3   1.0   39    6-48     90-130 (155)
 10 >2p0v_A Hypothetical protein B   5.8 2.3E+02  0.0067   12.1   1.5   39    6-48     92-132 (187)

No 1  
>>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:350-407)
Probab=28.26  E-value=27  Score=16.90  Aligned_cols=34  Identities=38%  Similarity=0.634  Sum_probs=26.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66842303399999999999856677999999999
Q 537021.9.peg.9    7 NYNLDERGRFFCYFLSLLIVDTLRSFSLFQHLWLK   41 (51)
Q Consensus         7 nynldergrffcyflsllivdtlrsfslfqhlwlk   41 (51)
                      .-||.|..|-|-|+|.. |.|..|.|.|-....-|
T Consensus        11 renleektrefryylgf-isdgvrrfalasefhtk   44 (58)
T 2au3_A           11 RENLEEKTREFRYYLGF-ISDGVRRFALASEFHTK   44 (58)
T ss_dssp             GGCHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred             HHCCCCCCHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_conf             73788578999999986-88999999999999999


No 2  
>>3fy6_A Integron cassette protein; novel, oyster POND, woodshole,USA, unknown function, structural genomics, PSI-2, protein structure initiative; 2.10A {Vibrio cholerae} (A:1-117)
Probab=22.06  E-value=44  Score=15.80  Aligned_cols=11  Identities=55%  Similarity=1.048  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHH
Q ss_conf             79999999999
Q 537021.9.peg.9   32 FSLFQHLWLKR   42 (51)
Q Consensus        32 fslfqhlwlkr   42 (51)
                      -.||||.||.-
T Consensus        78 qnlfqhawlew   88 (117)
T 3fy6_A           78 QNLFQHAWLEW   88 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 3  
>>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus} (A:)
Probab=10.45  E-value=93  Score=14.09  Aligned_cols=37  Identities=35%  Similarity=0.692  Sum_probs=22.9

Q ss_pred             CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9212136684230339999999999985667799999999999988
Q 537021.9.peg.9    1 MAFFFNNYNLDERGRFFCYFLSLLIVDTLRSFSLFQHLWLKRLSSI   46 (51)
Q Consensus         1 mafffnnynldergrffcyflsllivdtlrsfslfqhlwlkrlssi   46 (51)
                      |+..|.+| ||+-|        .-||..+||=.-|-..|-.....|
T Consensus         1 ~~llfQsy-Ld~vG--------~qiVr~mksGe~F~KIWS~~veeI   37 (45)
T 3l32_A            1 MNLLFQSY-LDNVG--------VQIVRQMRSGERFLKIWSQTVEEI   37 (45)
T ss_dssp             -CHHHHHH-HHHHH--------HHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHH-HHHHH--------HHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             94279999-99999--------999999863562999999999999


No 4  
>>2nr7_A Secretion activator protein, putative; APCC85792, structural genomics, PSI-2, protein structure initiative, MCSG; 1.30A {Porphyromonas gingivalis W83} (A:80-195)
Probab=10.01  E-value=1.4e+02  Score=13.12  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99856677999999999999887
Q 537021.9.peg.9   25 IVDTLRSFSLFQHLWLKRLSSIL   47 (51)
Q Consensus        25 ivdtlrsfslfqhlwlkrlssil   47 (51)
                      .++.-+|+.-|..=|+.|..+++
T Consensus        92 ~~~~~~s~~~F~~GW~nR~~~~~  114 (116)
T 2nr7_A           92 RELLRHTNKRFLRGWLNRLEDIR  114 (116)
T ss_dssp             HHHHHHSTHHHHHHHHHHHHHGG
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             54304206478688999999976


No 5  
>>2p3y_A Hypothetical protein VPA0735; structural genomics, PSI-2, protein structure initiative; 1.80A {Vibrio parahaemolyticus rimd 2210633} (A:40-65,A:256-352)
Probab=9.76  E-value=1.4e+02  Score=13.18  Aligned_cols=13  Identities=38%  Similarity=0.539  Sum_probs=9.8

Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             6684230339999
Q 537021.9.peg.9    7 NYNLDERGRFFCY   19 (51)
Q Consensus         7 nynldergrffcy   19 (51)
                      -++||.|..||-+
T Consensus       103 ~~~lDaR~~ffy~  115 (123)
T 2p3y_A          103 YDELDERAAWFYE  115 (123)
T ss_dssp             SBCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
T ss_conf             4114567899999


No 6  
>>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Neisseria meningitidis MC58} (A:70-167)
Probab=8.91  E-value=1.6e+02  Score=12.89  Aligned_cols=23  Identities=26%  Similarity=0.655  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85667799999999999988740
Q 537021.9.peg.9   27 DTLRSFSLFQHLWLKRLSSILVQ   49 (51)
Q Consensus        27 dtlrsfslfqhlwlkrlssilvq   49 (51)
                      ..|.++.-|..=|++|..+++-+
T Consensus        69 ~~l~~~~~F~~GW~~R~~~~~~~   91 (98)
T 2ikb_A           69 TKLGTFTSFGKGWVRRVAQNLIH   91 (98)
T ss_dssp             HHHCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             85674277888899999999986


No 7  
>>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} (D:1-147)
Probab=8.16  E-value=1.3e+02  Score=13.33  Aligned_cols=11  Identities=36%  Similarity=0.627  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHH
Q ss_conf             33999999999
Q 537021.9.peg.9   14 GRFFCYFLSLL   24 (51)
Q Consensus        14 grffcyflsll   24 (51)
                      -.||-||||-+
T Consensus        86 Rd~FDYFLSa~   96 (147)
T 2es4_D           86 REFFDYXLTAQ   96 (147)
T ss_dssp             HHHHHHHHTTG
T ss_pred             HHHHHHHHHCC
T ss_conf             99999987513


No 8  
>>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein structure initiative, midwest center for structural genomics, GTP-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} (A:207-277)
Probab=6.73  E-value=51  Score=15.47  Aligned_cols=11  Identities=64%  Similarity=1.250  Sum_probs=7.3

Q ss_pred             CCHHHHHHHHH
Q ss_conf             68423033999
Q 537021.9.peg.9    8 YNLDERGRFFC   18 (51)
Q Consensus         8 ynldergrffc   18 (51)
                      .+|.+||+||.
T Consensus        23 ~~lq~RG~lFV   33 (71)
T 3e3x_A           23 FNLQERGRLFI   33 (71)
T ss_dssp             HHHTTSEEESC
T ss_pred             HHHHHHCEEEE
T ss_conf             98875311886


No 9  
>>2nvp_A Hypothetical protein; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Clostridium perfringens} (A:41-195)
Probab=6.15  E-value=2e+02  Score=12.28  Aligned_cols=39  Identities=21%  Similarity=0.404  Sum_probs=26.6

Q ss_pred             CCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3668423033999999999--998566779999999999998874
Q 537021.9.peg.9    6 NNYNLDERGRFFCYFLSLL--IVDTLRSFSLFQHLWLKRLSSILV   48 (51)
Q Consensus         6 nnynldergrffcyflsll--ivdtlrsfslfqhlwlkrlssilv   48 (51)
                      -+|.+|-    .|||+.|.  .-..-..-+.|..-|++-+..||-
T Consensus        90 rKyEiDS----Lcypl~La~~y~~~Tgd~~~f~~~w~~A~~~il~  130 (155)
T 2nvp_A           90 RKYEIDS----LCYPVRLIHKYWKESGDETFFNDDIKKAFNXIID  130 (155)
T ss_dssp             CCCCHHH----HHHHHHHHHHHHHHHCCCSSCCHHHHHHHHHHHH
T ss_pred             EEHHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             5236665----5789999999998649846660999999999999


No 10 
>>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} (A:84-270)
Probab=5.84  E-value=2.3e+02  Score=12.06  Aligned_cols=39  Identities=26%  Similarity=0.596  Sum_probs=27.4

Q ss_pred             CCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             366842303399999999--9998566779999999999998874
Q 537021.9.peg.9    6 NNYNLDERGRFFCYFLSL--LIVDTLRSFSLFQHLWLKRLSSILV   48 (51)
Q Consensus         6 nnynldergrffcyflsl--livdtlrsfslfqhlwlkrlssilv   48 (51)
                      -+|.+|-    .|||+.|  ..-..-..-+.|..-|++-+..|+-
T Consensus        92 rKyEiDS----L~~~l~La~~y~~~Tgd~~~f~~~w~~Av~~il~  132 (187)
T 2p0v_A           92 RKWEIDS----LCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLK  132 (187)
T ss_dssp             CCCCHHH----HHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHH
T ss_pred             EHHHHHH----HHHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHH
T ss_conf             2247777----6889999999999739846406899999999999


Done!